Multiple sequence alignment - TraesCS5D01G349700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G349700 chr5D 100.000 5249 0 0 1 5249 434485313 434480065 0.000000e+00 9694.0
1 TraesCS5D01G349700 chr5D 80.621 676 81 25 4597 5249 434599809 434600457 1.320000e-130 477.0
2 TraesCS5D01G349700 chr5D 79.446 433 71 15 4599 5016 434548253 434548682 1.850000e-74 291.0
3 TraesCS5D01G349700 chr5D 98.214 56 1 0 753 808 34759274 34759329 1.200000e-16 99.0
4 TraesCS5D01G349700 chr5D 100.000 45 0 0 4555 4599 537638804 537638848 3.370000e-12 84.2
5 TraesCS5D01G349700 chr5B 93.965 3612 189 15 966 4553 527259122 527255516 0.000000e+00 5435.0
6 TraesCS5D01G349700 chr5B 89.139 2136 228 4 2088 4221 527488917 527491050 0.000000e+00 2656.0
7 TraesCS5D01G349700 chr5B 87.657 956 85 9 913 1862 527487865 527488793 0.000000e+00 1081.0
8 TraesCS5D01G349700 chr5B 88.872 656 52 12 4599 5249 527255515 527254876 0.000000e+00 787.0
9 TraesCS5D01G349700 chr5B 80.746 670 85 23 4599 5249 527768908 527769552 2.840000e-132 483.0
10 TraesCS5D01G349700 chr5B 84.435 469 51 11 4798 5249 527248405 527247942 4.820000e-120 442.0
11 TraesCS5D01G349700 chr5B 83.969 262 36 3 3964 4222 527764084 527764342 4.060000e-61 246.0
12 TraesCS5D01G349700 chr5B 83.200 250 36 5 3964 4213 527599632 527599875 1.900000e-54 224.0
13 TraesCS5D01G349700 chr5B 94.118 51 3 0 1889 1939 527258098 527258048 1.570000e-10 78.7
14 TraesCS5D01G349700 chr5B 100.000 30 0 0 530 559 366406215 366406186 7.340000e-04 56.5
15 TraesCS5D01G349700 chr5B 100.000 30 0 0 530 559 439223732 439223703 7.340000e-04 56.5
16 TraesCS5D01G349700 chr5A 94.572 3408 167 8 954 4353 548507989 548504592 0.000000e+00 5252.0
17 TraesCS5D01G349700 chr5A 85.736 659 71 11 4599 5249 548504322 548503679 0.000000e+00 675.0
18 TraesCS5D01G349700 chr5A 87.524 529 55 7 2 521 370047093 370046567 7.520000e-168 601.0
19 TraesCS5D01G349700 chr5A 80.689 668 92 23 4599 5249 548657447 548658094 7.900000e-133 484.0
20 TraesCS5D01G349700 chr7D 88.302 530 52 8 1 521 171144886 171144358 1.240000e-175 627.0
21 TraesCS5D01G349700 chr7D 87.833 526 51 9 1 514 603578411 603577887 5.810000e-169 604.0
22 TraesCS5D01G349700 chr7D 96.491 57 2 0 755 811 300888215 300888159 1.560000e-15 95.3
23 TraesCS5D01G349700 chr7D 92.424 66 4 1 742 807 409808289 409808225 5.600000e-15 93.5
24 TraesCS5D01G349700 chr7D 96.970 33 1 0 527 559 134764707 134764739 7.340000e-04 56.5
25 TraesCS5D01G349700 chr7D 100.000 30 0 0 530 559 171134876 171134847 7.340000e-04 56.5
26 TraesCS5D01G349700 chr2B 88.676 521 50 5 1 513 188473352 188472833 1.240000e-175 627.0
27 TraesCS5D01G349700 chr2B 100.000 49 0 0 4551 4599 32162673 32162721 2.010000e-14 91.6
28 TraesCS5D01G349700 chr3D 87.382 531 54 9 1 521 381045374 381045901 9.730000e-167 597.0
29 TraesCS5D01G349700 chr3D 100.000 46 0 0 4554 4599 40168732 40168687 9.370000e-13 86.1
30 TraesCS5D01G349700 chr7A 87.194 531 56 8 1 521 136185117 136184589 1.260000e-165 593.0
31 TraesCS5D01G349700 chr4B 87.170 530 57 9 1 521 591360772 591360245 4.530000e-165 592.0
32 TraesCS5D01G349700 chr4B 100.000 46 0 0 4554 4599 41838809 41838854 9.370000e-13 86.1
33 TraesCS5D01G349700 chr4B 100.000 30 0 0 530 559 591320550 591320521 7.340000e-04 56.5
34 TraesCS5D01G349700 chr1B 87.645 518 53 6 6 513 542179357 542179873 4.530000e-165 592.0
35 TraesCS5D01G349700 chr1B 100.000 46 0 0 4554 4599 592303323 592303368 9.370000e-13 86.1
36 TraesCS5D01G349700 chr1B 94.444 54 1 2 4547 4599 231662032 231662084 1.210000e-11 82.4
37 TraesCS5D01G349700 chr1D 87.006 531 57 8 1 521 494404828 494404300 5.860000e-164 588.0
38 TraesCS5D01G349700 chr1D 96.429 56 2 0 753 808 23321214 23321269 5.600000e-15 93.5
39 TraesCS5D01G349700 chr1D 94.915 59 3 0 753 811 90754301 90754243 5.600000e-15 93.5
40 TraesCS5D01G349700 chr1D 96.429 56 2 0 753 808 263322497 263322552 5.600000e-15 93.5
41 TraesCS5D01G349700 chr1D 100.000 46 0 0 4554 4599 470718326 470718371 9.370000e-13 86.1
42 TraesCS5D01G349700 chr1D 94.545 55 0 3 4547 4599 376611507 376611560 1.210000e-11 82.4
43 TraesCS5D01G349700 chr1D 97.826 46 1 0 4554 4599 17211523 17211568 4.360000e-11 80.5
44 TraesCS5D01G349700 chr1D 97.872 47 0 1 4554 4599 193989721 193989767 4.360000e-11 80.5
45 TraesCS5D01G349700 chr1D 97.872 47 0 1 4554 4599 401213350 401213396 4.360000e-11 80.5
46 TraesCS5D01G349700 chr1D 97.872 47 0 1 4553 4599 462964293 462964248 4.360000e-11 80.5
47 TraesCS5D01G349700 chr1D 92.727 55 2 2 4540 4594 110006949 110006897 1.570000e-10 78.7
48 TraesCS5D01G349700 chr2A 96.552 58 1 1 750 807 111412084 111412140 1.560000e-15 95.3
49 TraesCS5D01G349700 chr4D 92.424 66 4 1 756 820 486931324 486931259 5.600000e-15 93.5
50 TraesCS5D01G349700 chr4D 96.970 33 1 0 527 559 131194896 131194928 7.340000e-04 56.5
51 TraesCS5D01G349700 chr4D 96.970 33 1 0 527 559 466805549 466805581 7.340000e-04 56.5
52 TraesCS5D01G349700 chr3B 98.000 50 1 0 4550 4599 36410281 36410330 2.600000e-13 87.9
53 TraesCS5D01G349700 chr3B 100.000 47 0 0 4553 4599 558087701 558087655 2.600000e-13 87.9
54 TraesCS5D01G349700 chr3B 88.732 71 7 1 742 811 719920467 719920537 9.370000e-13 86.1
55 TraesCS5D01G349700 chr3A 98.039 51 0 1 4550 4599 13955030 13955080 2.600000e-13 87.9
56 TraesCS5D01G349700 chr6A 100.000 46 0 0 4554 4599 604619256 604619211 9.370000e-13 86.1
57 TraesCS5D01G349700 chr2D 100.000 46 0 0 4554 4599 181351380 181351425 9.370000e-13 86.1
58 TraesCS5D01G349700 chr1A 100.000 46 0 0 4554 4599 19702015 19702060 9.370000e-13 86.1
59 TraesCS5D01G349700 chr1A 100.000 46 0 0 4554 4599 24352011 24351966 9.370000e-13 86.1
60 TraesCS5D01G349700 chr1A 100.000 45 0 0 4555 4599 59116859 59116815 3.370000e-12 84.2
61 TraesCS5D01G349700 chrUn 97.917 48 0 1 4553 4599 459025105 459025058 1.210000e-11 82.4
62 TraesCS5D01G349700 chrUn 97.872 47 0 1 4554 4599 326168684 326168638 4.360000e-11 80.5
63 TraesCS5D01G349700 chrUn 97.826 46 0 1 4554 4599 88622686 88622730 1.570000e-10 78.7
64 TraesCS5D01G349700 chrUn 95.745 47 1 1 4554 4599 241066139 241066185 2.030000e-09 75.0
65 TraesCS5D01G349700 chrUn 95.745 47 1 1 4554 4599 245288828 245288874 2.030000e-09 75.0
66 TraesCS5D01G349700 chrUn 100.000 40 0 0 4555 4594 271416069 271416030 2.030000e-09 75.0
67 TraesCS5D01G349700 chrUn 95.745 47 1 1 4554 4599 315139578 315139532 2.030000e-09 75.0
68 TraesCS5D01G349700 chrUn 95.745 47 1 1 4554 4599 326167631 326167585 2.030000e-09 75.0
69 TraesCS5D01G349700 chrUn 95.745 47 1 1 4554 4599 349207286 349207240 2.030000e-09 75.0
70 TraesCS5D01G349700 chrUn 95.652 46 1 1 4555 4599 84225165 84225120 7.290000e-09 73.1
71 TraesCS5D01G349700 chrUn 92.157 51 2 2 4550 4599 372566745 372566794 2.620000e-08 71.3
72 TraesCS5D01G349700 chr6D 96.970 33 1 0 527 559 9218453 9218485 7.340000e-04 56.5
73 TraesCS5D01G349700 chr6D 100.000 30 0 0 530 559 270108785 270108756 7.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G349700 chr5D 434480065 434485313 5248 True 9694.000000 9694 100.000000 1 5249 1 chr5D.!!$R1 5248
1 TraesCS5D01G349700 chr5D 434599809 434600457 648 False 477.000000 477 80.621000 4597 5249 1 chr5D.!!$F3 652
2 TraesCS5D01G349700 chr5B 527254876 527259122 4246 True 2100.233333 5435 92.318333 966 5249 3 chr5B.!!$R4 4283
3 TraesCS5D01G349700 chr5B 527487865 527491050 3185 False 1868.500000 2656 88.398000 913 4221 2 chr5B.!!$F4 3308
4 TraesCS5D01G349700 chr5B 527768908 527769552 644 False 483.000000 483 80.746000 4599 5249 1 chr5B.!!$F3 650
5 TraesCS5D01G349700 chr5A 548503679 548507989 4310 True 2963.500000 5252 90.154000 954 5249 2 chr5A.!!$R2 4295
6 TraesCS5D01G349700 chr5A 370046567 370047093 526 True 601.000000 601 87.524000 2 521 1 chr5A.!!$R1 519
7 TraesCS5D01G349700 chr5A 548657447 548658094 647 False 484.000000 484 80.689000 4599 5249 1 chr5A.!!$F1 650
8 TraesCS5D01G349700 chr7D 171144358 171144886 528 True 627.000000 627 88.302000 1 521 1 chr7D.!!$R2 520
9 TraesCS5D01G349700 chr7D 603577887 603578411 524 True 604.000000 604 87.833000 1 514 1 chr7D.!!$R5 513
10 TraesCS5D01G349700 chr2B 188472833 188473352 519 True 627.000000 627 88.676000 1 513 1 chr2B.!!$R1 512
11 TraesCS5D01G349700 chr3D 381045374 381045901 527 False 597.000000 597 87.382000 1 521 1 chr3D.!!$F1 520
12 TraesCS5D01G349700 chr7A 136184589 136185117 528 True 593.000000 593 87.194000 1 521 1 chr7A.!!$R1 520
13 TraesCS5D01G349700 chr4B 591360245 591360772 527 True 592.000000 592 87.170000 1 521 1 chr4B.!!$R2 520
14 TraesCS5D01G349700 chr1B 542179357 542179873 516 False 592.000000 592 87.645000 6 513 1 chr1B.!!$F2 507
15 TraesCS5D01G349700 chr1D 494404300 494404828 528 True 588.000000 588 87.006000 1 521 1 chr1D.!!$R4 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 950 0.031716 CCATCACTCTCTCCCCTCCA 60.032 60.0 0.00 0.00 0.00 3.86 F
950 966 0.531974 TCCACAAAGCCGTCAGTCAC 60.532 55.0 0.00 0.00 0.00 3.67 F
1093 1109 0.538057 CAACAAGCAGAAGGGCCTCA 60.538 55.0 6.46 0.00 0.00 3.86 F
2250 2287 1.325355 ATATCTGCAGCCATGGCAAC 58.675 50.0 37.18 27.64 44.88 4.17 F
2700 2737 0.319555 CGGACGAGACTTTCAAGGCA 60.320 55.0 0.00 0.00 36.14 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2338 0.251653 ACCGTACCTCCTGAAGAGCA 60.252 55.000 0.00 0.0 41.74 4.26 R
2673 2710 0.732880 AAGTCTCGTCCGCAATGTCG 60.733 55.000 0.00 0.0 0.00 4.35 R
2685 2722 2.213499 ACAAGTGCCTTGAAAGTCTCG 58.787 47.619 18.22 0.0 43.42 4.04 R
4080 4117 0.034089 AAGCTTCTTCATTCCCCGGG 60.034 55.000 15.80 15.8 0.00 5.73 R
4674 4773 0.251634 TGCCGCTGTCATGGAATACA 59.748 50.000 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 134 3.876309 AGTGTGGAAAAGTGGTGGTAT 57.124 42.857 0.00 0.00 0.00 2.73
166 171 6.311735 TGTCCCTAAGAAATTGGCTAAGTTT 58.688 36.000 0.00 0.00 0.00 2.66
176 181 4.460948 TTGGCTAAGTTTACTAGACCGG 57.539 45.455 0.00 0.00 0.00 5.28
184 190 4.338879 AGTTTACTAGACCGGTAGCAAGA 58.661 43.478 7.34 0.00 0.00 3.02
229 237 1.565759 AGCATGCCATCCCTTACTTGA 59.434 47.619 15.66 0.00 0.00 3.02
238 246 7.125391 TGCCATCCCTTACTTGAAATTCTATT 58.875 34.615 0.00 0.00 0.00 1.73
384 393 7.309770 AGGAAGAAACTTCTATCACTCTTGT 57.690 36.000 10.58 0.00 36.28 3.16
449 465 0.660300 CACGCGCGCTCATAGATGTA 60.660 55.000 32.58 0.00 0.00 2.29
458 474 4.682787 CGCTCATAGATGTACACCAAAGA 58.317 43.478 0.00 0.00 0.00 2.52
460 476 5.755375 CGCTCATAGATGTACACCAAAGAAT 59.245 40.000 0.00 0.00 0.00 2.40
476 492 8.087750 CACCAAAGAATAACAACATAACCACAT 58.912 33.333 0.00 0.00 0.00 3.21
493 509 4.928615 ACCACATGCAATTTAAACCAATCG 59.071 37.500 0.00 0.00 0.00 3.34
497 513 6.806249 CACATGCAATTTAAACCAATCGTAGT 59.194 34.615 0.00 0.00 0.00 2.73
521 537 8.691661 GTAATTCACCAATTACCATAGGACAT 57.308 34.615 6.40 0.00 44.74 3.06
522 538 9.131791 GTAATTCACCAATTACCATAGGACATT 57.868 33.333 6.40 0.00 44.74 2.71
523 539 7.587037 ATTCACCAATTACCATAGGACATTG 57.413 36.000 0.00 0.00 0.00 2.82
524 540 4.887071 TCACCAATTACCATAGGACATTGC 59.113 41.667 0.00 0.00 30.20 3.56
525 541 4.037923 CACCAATTACCATAGGACATTGCC 59.962 45.833 0.00 0.00 30.20 4.52
526 542 4.079212 ACCAATTACCATAGGACATTGCCT 60.079 41.667 5.23 5.23 42.15 4.75
527 543 4.279169 CCAATTACCATAGGACATTGCCTG 59.721 45.833 9.16 0.00 39.08 4.85
528 544 2.638480 TACCATAGGACATTGCCTGC 57.362 50.000 9.16 0.00 39.08 4.85
529 545 0.625316 ACCATAGGACATTGCCTGCA 59.375 50.000 9.16 0.00 39.08 4.41
530 546 1.315690 CCATAGGACATTGCCTGCAG 58.684 55.000 6.78 6.78 39.08 4.41
531 547 1.315690 CATAGGACATTGCCTGCAGG 58.684 55.000 29.34 29.34 39.08 4.85
532 548 0.921896 ATAGGACATTGCCTGCAGGT 59.078 50.000 32.81 13.93 39.08 4.00
533 549 0.035152 TAGGACATTGCCTGCAGGTG 60.035 55.000 32.81 24.87 39.08 4.00
534 550 1.604593 GGACATTGCCTGCAGGTGT 60.605 57.895 32.81 27.84 37.57 4.16
535 551 1.181098 GGACATTGCCTGCAGGTGTT 61.181 55.000 32.81 15.39 37.57 3.32
536 552 0.038892 GACATTGCCTGCAGGTGTTG 60.039 55.000 32.81 26.39 37.57 3.33
537 553 0.467844 ACATTGCCTGCAGGTGTTGA 60.468 50.000 32.81 15.13 37.57 3.18
538 554 0.892755 CATTGCCTGCAGGTGTTGAT 59.107 50.000 32.81 16.61 37.57 2.57
539 555 0.892755 ATTGCCTGCAGGTGTTGATG 59.107 50.000 32.81 6.29 37.57 3.07
540 556 0.178995 TTGCCTGCAGGTGTTGATGA 60.179 50.000 32.81 8.30 37.57 2.92
541 557 0.178995 TGCCTGCAGGTGTTGATGAA 60.179 50.000 32.81 5.96 37.57 2.57
542 558 0.524862 GCCTGCAGGTGTTGATGAAG 59.475 55.000 32.81 4.20 37.57 3.02
543 559 1.883638 GCCTGCAGGTGTTGATGAAGA 60.884 52.381 32.81 0.00 37.57 2.87
544 560 2.719739 CCTGCAGGTGTTGATGAAGAT 58.280 47.619 25.53 0.00 0.00 2.40
545 561 2.422479 CCTGCAGGTGTTGATGAAGATG 59.578 50.000 25.53 0.00 0.00 2.90
546 562 3.340928 CTGCAGGTGTTGATGAAGATGA 58.659 45.455 5.57 0.00 0.00 2.92
547 563 3.076621 TGCAGGTGTTGATGAAGATGAC 58.923 45.455 0.00 0.00 0.00 3.06
548 564 3.076621 GCAGGTGTTGATGAAGATGACA 58.923 45.455 0.00 0.00 0.00 3.58
549 565 3.126514 GCAGGTGTTGATGAAGATGACAG 59.873 47.826 0.00 0.00 0.00 3.51
550 566 4.572909 CAGGTGTTGATGAAGATGACAGA 58.427 43.478 0.00 0.00 0.00 3.41
551 567 4.630505 CAGGTGTTGATGAAGATGACAGAG 59.369 45.833 0.00 0.00 0.00 3.35
552 568 4.285517 AGGTGTTGATGAAGATGACAGAGT 59.714 41.667 0.00 0.00 0.00 3.24
553 569 4.999950 GGTGTTGATGAAGATGACAGAGTT 59.000 41.667 0.00 0.00 0.00 3.01
554 570 5.106791 GGTGTTGATGAAGATGACAGAGTTG 60.107 44.000 0.00 0.00 0.00 3.16
555 571 5.468072 GTGTTGATGAAGATGACAGAGTTGT 59.532 40.000 0.00 0.00 41.18 3.32
556 572 6.017605 GTGTTGATGAAGATGACAGAGTTGTT 60.018 38.462 0.00 0.00 37.76 2.83
557 573 6.017687 TGTTGATGAAGATGACAGAGTTGTTG 60.018 38.462 0.00 0.00 37.76 3.33
558 574 4.999311 TGATGAAGATGACAGAGTTGTTGG 59.001 41.667 0.00 0.00 37.76 3.77
559 575 3.141398 TGAAGATGACAGAGTTGTTGGC 58.859 45.455 0.00 0.00 37.76 4.52
560 576 1.800805 AGATGACAGAGTTGTTGGCG 58.199 50.000 0.00 0.00 37.76 5.69
561 577 0.798776 GATGACAGAGTTGTTGGCGG 59.201 55.000 0.00 0.00 37.76 6.13
562 578 0.606401 ATGACAGAGTTGTTGGCGGG 60.606 55.000 0.00 0.00 37.76 6.13
563 579 1.966451 GACAGAGTTGTTGGCGGGG 60.966 63.158 0.00 0.00 37.76 5.73
564 580 2.113139 CAGAGTTGTTGGCGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
565 581 2.113139 AGAGTTGTTGGCGGGGTG 59.887 61.111 0.00 0.00 0.00 4.61
566 582 2.203294 GAGTTGTTGGCGGGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
567 583 2.203294 AGTTGTTGGCGGGGTGTC 60.203 61.111 0.00 0.00 0.00 3.67
568 584 3.656045 GTTGTTGGCGGGGTGTCG 61.656 66.667 0.00 0.00 0.00 4.35
569 585 4.939368 TTGTTGGCGGGGTGTCGG 62.939 66.667 0.00 0.00 0.00 4.79
571 587 4.629523 GTTGGCGGGGTGTCGGAA 62.630 66.667 0.00 0.00 0.00 4.30
572 588 4.323477 TTGGCGGGGTGTCGGAAG 62.323 66.667 0.00 0.00 0.00 3.46
576 592 4.078516 CGGGGTGTCGGAAGGGTC 62.079 72.222 0.00 0.00 0.00 4.46
577 593 2.606826 GGGGTGTCGGAAGGGTCT 60.607 66.667 0.00 0.00 0.00 3.85
578 594 2.222013 GGGGTGTCGGAAGGGTCTT 61.222 63.158 0.00 0.00 0.00 3.01
579 595 1.003718 GGGTGTCGGAAGGGTCTTG 60.004 63.158 0.00 0.00 0.00 3.02
580 596 1.752833 GGTGTCGGAAGGGTCTTGT 59.247 57.895 0.00 0.00 0.00 3.16
581 597 0.320508 GGTGTCGGAAGGGTCTTGTC 60.321 60.000 0.00 0.00 0.00 3.18
582 598 0.680061 GTGTCGGAAGGGTCTTGTCT 59.320 55.000 0.00 0.00 0.00 3.41
583 599 1.891150 GTGTCGGAAGGGTCTTGTCTA 59.109 52.381 0.00 0.00 0.00 2.59
584 600 1.891150 TGTCGGAAGGGTCTTGTCTAC 59.109 52.381 0.00 0.00 0.00 2.59
585 601 1.891150 GTCGGAAGGGTCTTGTCTACA 59.109 52.381 0.00 0.00 0.00 2.74
586 602 1.891150 TCGGAAGGGTCTTGTCTACAC 59.109 52.381 0.00 0.00 0.00 2.90
587 603 1.616865 CGGAAGGGTCTTGTCTACACA 59.383 52.381 0.00 0.00 0.00 3.72
588 604 2.233922 CGGAAGGGTCTTGTCTACACAT 59.766 50.000 0.00 0.00 30.55 3.21
589 605 3.306780 CGGAAGGGTCTTGTCTACACATT 60.307 47.826 0.00 0.00 30.55 2.71
590 606 4.003648 GGAAGGGTCTTGTCTACACATTG 58.996 47.826 0.00 0.00 30.55 2.82
591 607 3.059352 AGGGTCTTGTCTACACATTGC 57.941 47.619 0.00 0.00 30.55 3.56
592 608 1.732259 GGGTCTTGTCTACACATTGCG 59.268 52.381 0.00 0.00 30.55 4.85
593 609 1.732259 GGTCTTGTCTACACATTGCGG 59.268 52.381 0.00 0.00 30.55 5.69
594 610 2.413837 GTCTTGTCTACACATTGCGGT 58.586 47.619 0.00 0.00 30.55 5.68
595 611 2.157668 GTCTTGTCTACACATTGCGGTG 59.842 50.000 1.90 1.90 44.35 4.94
596 612 2.036604 TCTTGTCTACACATTGCGGTGA 59.963 45.455 9.58 0.00 41.32 4.02
597 613 1.790755 TGTCTACACATTGCGGTGAC 58.209 50.000 9.58 0.00 41.32 3.67
598 614 1.076332 GTCTACACATTGCGGTGACC 58.924 55.000 9.58 0.00 41.32 4.02
608 624 2.660206 CGGTGACCGGGAATGTCA 59.340 61.111 17.80 0.00 44.15 3.58
609 625 1.220749 CGGTGACCGGGAATGTCAT 59.779 57.895 17.80 0.00 43.98 3.06
610 626 0.810031 CGGTGACCGGGAATGTCATC 60.810 60.000 17.80 0.00 43.98 2.92
611 627 0.810031 GGTGACCGGGAATGTCATCG 60.810 60.000 6.32 0.00 43.98 3.84
612 628 0.810031 GTGACCGGGAATGTCATCGG 60.810 60.000 6.32 9.31 43.98 4.18
614 630 4.124910 CCGGGAATGTCATCGGTG 57.875 61.111 0.00 0.00 37.92 4.94
615 631 1.523711 CCGGGAATGTCATCGGTGG 60.524 63.158 0.00 0.00 37.92 4.61
616 632 2.180204 CGGGAATGTCATCGGTGGC 61.180 63.158 0.00 0.00 0.00 5.01
617 633 2.180204 GGGAATGTCATCGGTGGCG 61.180 63.158 0.00 0.00 30.74 5.69
618 634 1.153449 GGAATGTCATCGGTGGCGA 60.153 57.895 0.00 0.00 30.74 5.54
619 635 1.429148 GGAATGTCATCGGTGGCGAC 61.429 60.000 0.00 0.00 30.74 5.19
620 636 1.752501 GAATGTCATCGGTGGCGACG 61.753 60.000 0.00 0.00 30.74 5.12
621 637 3.716539 ATGTCATCGGTGGCGACGG 62.717 63.158 0.00 0.00 30.74 4.79
634 650 4.388499 GACGGCGACACATGGGGT 62.388 66.667 16.62 0.00 0.00 4.95
644 660 1.078214 ACATGGGGTGACATCAGCG 60.078 57.895 5.07 0.00 44.67 5.18
645 661 1.820906 CATGGGGTGACATCAGCGG 60.821 63.158 5.07 0.00 44.67 5.52
646 662 3.047807 ATGGGGTGACATCAGCGGG 62.048 63.158 5.07 0.00 44.67 6.13
647 663 3.399181 GGGGTGACATCAGCGGGA 61.399 66.667 5.07 0.00 44.67 5.14
648 664 2.668632 GGGTGACATCAGCGGGAA 59.331 61.111 5.07 0.00 44.67 3.97
649 665 1.450312 GGGTGACATCAGCGGGAAG 60.450 63.158 5.07 0.00 44.67 3.46
650 666 1.450312 GGTGACATCAGCGGGAAGG 60.450 63.158 0.00 0.00 34.50 3.46
651 667 1.596934 GTGACATCAGCGGGAAGGA 59.403 57.895 0.00 0.00 0.00 3.36
652 668 0.036388 GTGACATCAGCGGGAAGGAA 60.036 55.000 0.00 0.00 0.00 3.36
653 669 0.250234 TGACATCAGCGGGAAGGAAG 59.750 55.000 0.00 0.00 0.00 3.46
654 670 0.250513 GACATCAGCGGGAAGGAAGT 59.749 55.000 0.00 0.00 0.00 3.01
655 671 1.480954 GACATCAGCGGGAAGGAAGTA 59.519 52.381 0.00 0.00 0.00 2.24
656 672 1.482593 ACATCAGCGGGAAGGAAGTAG 59.517 52.381 0.00 0.00 0.00 2.57
657 673 0.466124 ATCAGCGGGAAGGAAGTAGC 59.534 55.000 0.00 0.00 0.00 3.58
658 674 1.153349 CAGCGGGAAGGAAGTAGCC 60.153 63.158 0.00 0.00 0.00 3.93
659 675 2.202892 GCGGGAAGGAAGTAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
660 676 2.202892 CGGGAAGGAAGTAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
661 677 2.202892 GGGAAGGAAGTAGCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
662 678 2.890961 GGAAGGAAGTAGCCGCGC 60.891 66.667 0.00 0.00 0.00 6.86
663 679 3.255379 GAAGGAAGTAGCCGCGCG 61.255 66.667 25.67 25.67 0.00 6.86
664 680 3.984200 GAAGGAAGTAGCCGCGCGT 62.984 63.158 29.95 14.20 0.00 6.01
665 681 4.796231 AGGAAGTAGCCGCGCGTG 62.796 66.667 29.95 20.72 0.00 5.34
676 692 4.973360 GCGCGTGCGGCAAAAAGA 62.973 61.111 16.70 0.00 43.84 2.52
677 693 2.796617 CGCGTGCGGCAAAAAGAG 60.797 61.111 3.23 0.00 43.84 2.85
678 694 2.331451 GCGTGCGGCAAAAAGAGT 59.669 55.556 3.23 0.00 42.87 3.24
679 695 1.725973 GCGTGCGGCAAAAAGAGTC 60.726 57.895 3.23 0.00 42.87 3.36
680 696 1.082104 CGTGCGGCAAAAAGAGTCC 60.082 57.895 3.23 0.00 0.00 3.85
681 697 1.082104 GTGCGGCAAAAAGAGTCCG 60.082 57.895 3.23 0.00 44.29 4.79
682 698 2.258013 TGCGGCAAAAAGAGTCCGG 61.258 57.895 0.00 0.00 41.96 5.14
683 699 1.964373 GCGGCAAAAAGAGTCCGGA 60.964 57.895 0.00 0.00 41.96 5.14
684 700 1.866925 CGGCAAAAAGAGTCCGGAC 59.133 57.895 27.67 27.67 38.35 4.79
685 701 1.866925 GGCAAAAAGAGTCCGGACG 59.133 57.895 28.26 13.59 36.20 4.79
686 702 0.601841 GGCAAAAAGAGTCCGGACGA 60.602 55.000 28.26 0.00 36.20 4.20
687 703 0.790814 GCAAAAAGAGTCCGGACGAG 59.209 55.000 28.26 14.61 36.20 4.18
688 704 1.872653 GCAAAAAGAGTCCGGACGAGT 60.873 52.381 28.26 12.08 36.20 4.18
689 705 2.480845 CAAAAAGAGTCCGGACGAGTT 58.519 47.619 28.26 19.24 36.20 3.01
690 706 2.870411 CAAAAAGAGTCCGGACGAGTTT 59.130 45.455 28.26 23.37 36.20 2.66
691 707 2.904697 AAAGAGTCCGGACGAGTTTT 57.095 45.000 28.26 21.63 36.20 2.43
692 708 2.435533 AAGAGTCCGGACGAGTTTTC 57.564 50.000 28.26 18.77 36.20 2.29
701 717 4.424430 CGAGTTTTCGGCCGTGCG 62.424 66.667 27.15 16.07 43.05 5.34
702 718 3.343421 GAGTTTTCGGCCGTGCGT 61.343 61.111 27.15 7.30 0.00 5.24
703 719 3.573489 GAGTTTTCGGCCGTGCGTG 62.573 63.158 27.15 0.00 0.00 5.34
704 720 4.676586 GTTTTCGGCCGTGCGTGG 62.677 66.667 27.15 0.00 0.00 4.94
705 721 4.912485 TTTTCGGCCGTGCGTGGA 62.912 61.111 27.15 0.00 0.00 4.02
711 727 4.760047 GCCGTGCGTGGAGGTGAT 62.760 66.667 0.00 0.00 0.00 3.06
712 728 2.815211 CCGTGCGTGGAGGTGATG 60.815 66.667 0.00 0.00 0.00 3.07
713 729 2.048222 CGTGCGTGGAGGTGATGT 60.048 61.111 0.00 0.00 0.00 3.06
714 730 2.382746 CGTGCGTGGAGGTGATGTG 61.383 63.158 0.00 0.00 0.00 3.21
715 731 1.005037 GTGCGTGGAGGTGATGTGA 60.005 57.895 0.00 0.00 0.00 3.58
716 732 0.391661 GTGCGTGGAGGTGATGTGAT 60.392 55.000 0.00 0.00 0.00 3.06
717 733 0.391528 TGCGTGGAGGTGATGTGATG 60.392 55.000 0.00 0.00 0.00 3.07
718 734 1.091771 GCGTGGAGGTGATGTGATGG 61.092 60.000 0.00 0.00 0.00 3.51
719 735 0.462581 CGTGGAGGTGATGTGATGGG 60.463 60.000 0.00 0.00 0.00 4.00
720 736 0.107017 GTGGAGGTGATGTGATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
721 737 1.281199 TGGAGGTGATGTGATGGGGG 61.281 60.000 0.00 0.00 0.00 5.40
722 738 0.988145 GGAGGTGATGTGATGGGGGA 60.988 60.000 0.00 0.00 0.00 4.81
723 739 1.143813 GAGGTGATGTGATGGGGGAT 58.856 55.000 0.00 0.00 0.00 3.85
724 740 1.496429 GAGGTGATGTGATGGGGGATT 59.504 52.381 0.00 0.00 0.00 3.01
725 741 1.216175 AGGTGATGTGATGGGGGATTG 59.784 52.381 0.00 0.00 0.00 2.67
726 742 1.035139 GTGATGTGATGGGGGATTGC 58.965 55.000 0.00 0.00 0.00 3.56
727 743 0.466007 TGATGTGATGGGGGATTGCG 60.466 55.000 0.00 0.00 0.00 4.85
728 744 1.152694 ATGTGATGGGGGATTGCGG 60.153 57.895 0.00 0.00 0.00 5.69
729 745 1.936767 ATGTGATGGGGGATTGCGGT 61.937 55.000 0.00 0.00 0.00 5.68
730 746 1.275421 TGTGATGGGGGATTGCGGTA 61.275 55.000 0.00 0.00 0.00 4.02
731 747 0.535102 GTGATGGGGGATTGCGGTAG 60.535 60.000 0.00 0.00 0.00 3.18
732 748 0.692756 TGATGGGGGATTGCGGTAGA 60.693 55.000 0.00 0.00 0.00 2.59
733 749 0.035458 GATGGGGGATTGCGGTAGAG 59.965 60.000 0.00 0.00 0.00 2.43
734 750 1.418908 ATGGGGGATTGCGGTAGAGG 61.419 60.000 0.00 0.00 0.00 3.69
735 751 1.764854 GGGGGATTGCGGTAGAGGA 60.765 63.158 0.00 0.00 0.00 3.71
736 752 1.749033 GGGGATTGCGGTAGAGGAG 59.251 63.158 0.00 0.00 0.00 3.69
737 753 1.049289 GGGGATTGCGGTAGAGGAGT 61.049 60.000 0.00 0.00 0.00 3.85
738 754 1.700955 GGGATTGCGGTAGAGGAGTA 58.299 55.000 0.00 0.00 0.00 2.59
739 755 2.037144 GGGATTGCGGTAGAGGAGTAA 58.963 52.381 0.00 0.00 0.00 2.24
740 756 2.433239 GGGATTGCGGTAGAGGAGTAAA 59.567 50.000 0.00 0.00 0.00 2.01
741 757 3.118519 GGGATTGCGGTAGAGGAGTAAAA 60.119 47.826 0.00 0.00 0.00 1.52
742 758 4.444449 GGGATTGCGGTAGAGGAGTAAAAT 60.444 45.833 0.00 0.00 0.00 1.82
743 759 5.123936 GGATTGCGGTAGAGGAGTAAAATT 58.876 41.667 0.00 0.00 0.00 1.82
744 760 5.589050 GGATTGCGGTAGAGGAGTAAAATTT 59.411 40.000 0.00 0.00 0.00 1.82
745 761 6.095021 GGATTGCGGTAGAGGAGTAAAATTTT 59.905 38.462 8.75 8.75 0.00 1.82
746 762 5.873179 TGCGGTAGAGGAGTAAAATTTTG 57.127 39.130 13.76 0.00 0.00 2.44
747 763 4.155280 TGCGGTAGAGGAGTAAAATTTTGC 59.845 41.667 13.76 12.17 0.00 3.68
748 764 4.395231 GCGGTAGAGGAGTAAAATTTTGCT 59.605 41.667 19.77 19.77 35.78 3.91
749 765 5.447413 GCGGTAGAGGAGTAAAATTTTGCTC 60.447 44.000 30.10 30.10 45.44 4.26
762 778 9.989869 GTAAAATTTTGCTCACTTATCTACTCC 57.010 33.333 13.76 0.00 0.00 3.85
763 779 7.631717 AAATTTTGCTCACTTATCTACTCCC 57.368 36.000 0.00 0.00 0.00 4.30
764 780 6.567602 ATTTTGCTCACTTATCTACTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
765 781 5.599999 TTTGCTCACTTATCTACTCCCTC 57.400 43.478 0.00 0.00 0.00 4.30
766 782 3.567397 TGCTCACTTATCTACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
767 783 2.554893 GCTCACTTATCTACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
768 784 3.822940 CTCACTTATCTACTCCCTCCGT 58.177 50.000 0.00 0.00 0.00 4.69
769 785 3.816523 CTCACTTATCTACTCCCTCCGTC 59.183 52.174 0.00 0.00 0.00 4.79
770 786 2.885894 CACTTATCTACTCCCTCCGTCC 59.114 54.545 0.00 0.00 0.00 4.79
771 787 2.158490 ACTTATCTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
772 788 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
773 789 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
774 790 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
775 791 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
776 792 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
777 793 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
778 794 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
779 795 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
780 796 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
781 797 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
782 798 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
783 799 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
784 800 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
785 801 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
786 802 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
787 803 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
788 804 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
789 805 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
790 806 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
818 834 8.483758 ACATTAGTGTAGTGTAGAATTTAGGGG 58.516 37.037 0.00 0.00 36.63 4.79
819 835 8.701895 CATTAGTGTAGTGTAGAATTTAGGGGA 58.298 37.037 0.00 0.00 0.00 4.81
820 836 8.849543 TTAGTGTAGTGTAGAATTTAGGGGAT 57.150 34.615 0.00 0.00 0.00 3.85
821 837 7.362802 AGTGTAGTGTAGAATTTAGGGGATC 57.637 40.000 0.00 0.00 0.00 3.36
822 838 6.040616 AGTGTAGTGTAGAATTTAGGGGATCG 59.959 42.308 0.00 0.00 0.00 3.69
823 839 6.040166 GTGTAGTGTAGAATTTAGGGGATCGA 59.960 42.308 0.00 0.00 0.00 3.59
824 840 6.781014 TGTAGTGTAGAATTTAGGGGATCGAT 59.219 38.462 0.00 0.00 0.00 3.59
825 841 6.749036 AGTGTAGAATTTAGGGGATCGATT 57.251 37.500 0.00 0.00 0.00 3.34
826 842 7.850935 AGTGTAGAATTTAGGGGATCGATTA 57.149 36.000 0.00 0.00 0.00 1.75
827 843 7.897864 AGTGTAGAATTTAGGGGATCGATTAG 58.102 38.462 0.00 0.00 0.00 1.73
828 844 7.728981 AGTGTAGAATTTAGGGGATCGATTAGA 59.271 37.037 0.00 0.00 0.00 2.10
829 845 8.532819 GTGTAGAATTTAGGGGATCGATTAGAT 58.467 37.037 0.00 0.00 43.51 1.98
830 846 8.531982 TGTAGAATTTAGGGGATCGATTAGATG 58.468 37.037 0.00 0.00 40.26 2.90
831 847 6.410540 AGAATTTAGGGGATCGATTAGATGC 58.589 40.000 0.00 0.00 45.62 3.91
837 853 3.026630 GGATCGATTAGATGCGGTTCA 57.973 47.619 0.00 0.00 40.26 3.18
838 854 2.731976 GGATCGATTAGATGCGGTTCAC 59.268 50.000 0.00 0.00 40.26 3.18
839 855 3.553096 GGATCGATTAGATGCGGTTCACT 60.553 47.826 0.00 0.00 40.26 3.41
840 856 2.809446 TCGATTAGATGCGGTTCACTG 58.191 47.619 0.00 0.00 0.00 3.66
841 857 2.425668 TCGATTAGATGCGGTTCACTGA 59.574 45.455 0.00 0.00 0.00 3.41
842 858 3.119280 TCGATTAGATGCGGTTCACTGAA 60.119 43.478 0.00 0.00 0.00 3.02
843 859 3.243877 CGATTAGATGCGGTTCACTGAAG 59.756 47.826 0.00 0.00 0.00 3.02
844 860 3.678056 TTAGATGCGGTTCACTGAAGT 57.322 42.857 0.00 0.00 0.00 3.01
845 861 4.794278 TTAGATGCGGTTCACTGAAGTA 57.206 40.909 0.00 0.00 0.00 2.24
846 862 3.678056 AGATGCGGTTCACTGAAGTAA 57.322 42.857 0.00 0.00 0.00 2.24
847 863 3.589988 AGATGCGGTTCACTGAAGTAAG 58.410 45.455 0.00 0.00 0.00 2.34
848 864 1.508632 TGCGGTTCACTGAAGTAAGC 58.491 50.000 0.00 0.00 0.00 3.09
849 865 1.070134 TGCGGTTCACTGAAGTAAGCT 59.930 47.619 0.00 0.00 0.00 3.74
850 866 2.143925 GCGGTTCACTGAAGTAAGCTT 58.856 47.619 3.48 3.48 37.71 3.74
851 867 2.096218 GCGGTTCACTGAAGTAAGCTTG 60.096 50.000 9.86 0.00 34.61 4.01
852 868 3.390135 CGGTTCACTGAAGTAAGCTTGA 58.610 45.455 9.86 0.00 34.61 3.02
853 869 3.807622 CGGTTCACTGAAGTAAGCTTGAA 59.192 43.478 9.86 0.00 34.61 2.69
854 870 4.272504 CGGTTCACTGAAGTAAGCTTGAAA 59.727 41.667 9.86 0.00 34.61 2.69
855 871 5.220777 CGGTTCACTGAAGTAAGCTTGAAAA 60.221 40.000 9.86 0.00 34.61 2.29
856 872 6.513393 CGGTTCACTGAAGTAAGCTTGAAAAT 60.513 38.462 9.86 0.00 34.61 1.82
857 873 7.203218 GGTTCACTGAAGTAAGCTTGAAAATT 58.797 34.615 9.86 0.00 34.61 1.82
858 874 7.706607 GGTTCACTGAAGTAAGCTTGAAAATTT 59.293 33.333 9.86 0.00 34.61 1.82
859 875 9.087424 GTTCACTGAAGTAAGCTTGAAAATTTT 57.913 29.630 9.86 2.28 34.61 1.82
861 877 9.730420 TCACTGAAGTAAGCTTGAAAATTTTAC 57.270 29.630 9.86 0.00 34.61 2.01
862 878 9.736023 CACTGAAGTAAGCTTGAAAATTTTACT 57.264 29.630 9.86 0.00 36.82 2.24
863 879 9.952188 ACTGAAGTAAGCTTGAAAATTTTACTC 57.048 29.630 9.86 0.00 35.29 2.59
864 880 9.399403 CTGAAGTAAGCTTGAAAATTTTACTCC 57.601 33.333 9.86 0.00 35.29 3.85
865 881 8.908903 TGAAGTAAGCTTGAAAATTTTACTCCA 58.091 29.630 9.86 0.00 35.29 3.86
866 882 9.181805 GAAGTAAGCTTGAAAATTTTACTCCAC 57.818 33.333 9.86 0.00 35.29 4.02
867 883 8.465273 AGTAAGCTTGAAAATTTTACTCCACT 57.535 30.769 9.86 0.00 32.72 4.00
868 884 9.569122 AGTAAGCTTGAAAATTTTACTCCACTA 57.431 29.630 9.86 0.00 32.72 2.74
893 909 6.927294 AATACTAAAAGAAAGATCGGCTGG 57.073 37.500 0.00 0.00 0.00 4.85
894 910 4.553330 ACTAAAAGAAAGATCGGCTGGA 57.447 40.909 0.00 0.00 0.00 3.86
895 911 4.508662 ACTAAAAGAAAGATCGGCTGGAG 58.491 43.478 0.00 0.00 0.00 3.86
896 912 3.703001 AAAAGAAAGATCGGCTGGAGA 57.297 42.857 0.00 0.00 0.00 3.71
897 913 3.922171 AAAGAAAGATCGGCTGGAGAT 57.078 42.857 0.00 0.00 0.00 2.75
898 914 2.906691 AGAAAGATCGGCTGGAGATG 57.093 50.000 0.00 0.00 0.00 2.90
899 915 1.202627 AGAAAGATCGGCTGGAGATGC 60.203 52.381 0.00 0.00 0.00 3.91
900 916 0.835941 AAAGATCGGCTGGAGATGCT 59.164 50.000 0.00 0.00 0.00 3.79
901 917 0.392336 AAGATCGGCTGGAGATGCTC 59.608 55.000 0.00 0.00 0.00 4.26
902 918 0.469705 AGATCGGCTGGAGATGCTCT 60.470 55.000 0.00 0.00 0.00 4.09
903 919 1.202989 AGATCGGCTGGAGATGCTCTA 60.203 52.381 0.00 0.00 0.00 2.43
904 920 1.615883 GATCGGCTGGAGATGCTCTAA 59.384 52.381 0.00 0.00 0.00 2.10
905 921 1.709578 TCGGCTGGAGATGCTCTAAT 58.290 50.000 0.00 0.00 0.00 1.73
906 922 1.615883 TCGGCTGGAGATGCTCTAATC 59.384 52.381 0.00 0.00 0.00 1.75
907 923 1.617850 CGGCTGGAGATGCTCTAATCT 59.382 52.381 0.00 0.00 39.66 2.40
908 924 2.609984 CGGCTGGAGATGCTCTAATCTG 60.610 54.545 0.00 0.00 37.03 2.90
909 925 2.368221 GGCTGGAGATGCTCTAATCTGT 59.632 50.000 0.00 0.00 37.03 3.41
910 926 3.554752 GGCTGGAGATGCTCTAATCTGTC 60.555 52.174 0.00 0.00 37.03 3.51
911 927 3.554752 GCTGGAGATGCTCTAATCTGTCC 60.555 52.174 0.00 0.00 37.03 4.02
914 930 3.821600 GGAGATGCTCTAATCTGTCCGTA 59.178 47.826 0.00 0.00 37.03 4.02
918 934 3.296854 TGCTCTAATCTGTCCGTACCAT 58.703 45.455 0.00 0.00 0.00 3.55
934 950 0.031716 CCATCACTCTCTCCCCTCCA 60.032 60.000 0.00 0.00 0.00 3.86
936 952 0.712979 ATCACTCTCTCCCCTCCACA 59.287 55.000 0.00 0.00 0.00 4.17
942 958 2.045926 CTCCCCTCCACAAAGCCG 60.046 66.667 0.00 0.00 0.00 5.52
950 966 0.531974 TCCACAAAGCCGTCAGTCAC 60.532 55.000 0.00 0.00 0.00 3.67
968 984 1.046472 ACTGAGTCAACGGTGGTGGA 61.046 55.000 0.00 0.00 0.00 4.02
981 997 2.107953 GTGGAGCAGAGCGGATCC 59.892 66.667 0.00 0.00 43.64 3.36
992 1008 0.678048 AGCGGATCCAGCTTTGGAAC 60.678 55.000 20.77 0.00 43.24 3.62
997 1013 2.555227 GGATCCAGCTTTGGAACCAGAA 60.555 50.000 14.37 0.00 46.50 3.02
1013 1029 1.194781 AGAACCATGGAGTCTGCGGT 61.195 55.000 21.47 0.00 0.00 5.68
1045 1061 1.817099 CTGAAGAGCGTGATGGGGC 60.817 63.158 0.00 0.00 0.00 5.80
1093 1109 0.538057 CAACAAGCAGAAGGGCCTCA 60.538 55.000 6.46 0.00 0.00 3.86
1453 1469 2.762043 TCGTCGGCATCCCCATCA 60.762 61.111 0.00 0.00 0.00 3.07
1477 1499 2.979676 CCAGCTGCTGCCACGAAA 60.980 61.111 23.86 0.00 40.80 3.46
1479 1501 1.582968 CAGCTGCTGCCACGAAATT 59.417 52.632 17.73 0.00 40.80 1.82
1529 1551 2.189257 CAATCCGGTGGGCATCGA 59.811 61.111 0.00 0.00 37.01 3.59
1599 1621 1.606531 GGAGCAGCTGAGGGTGATT 59.393 57.895 20.43 0.00 42.91 2.57
1888 1911 6.071560 TGCATCTTTCCTACTCTTTACTTCGA 60.072 38.462 0.00 0.00 0.00 3.71
2250 2287 1.325355 ATATCTGCAGCCATGGCAAC 58.675 50.000 37.18 27.64 44.88 4.17
2301 2338 5.073428 GGTGAAGAGGACTCCAAGAAAATT 58.927 41.667 0.00 0.00 0.00 1.82
2604 2641 1.394618 CAAACAACCGTCCCCTCAAA 58.605 50.000 0.00 0.00 0.00 2.69
2673 2710 2.355132 TGATTCTCTTCGTAGCGAGGAC 59.645 50.000 0.00 0.00 37.08 3.85
2685 2722 2.158959 CGAGGACGACATTGCGGAC 61.159 63.158 0.00 0.00 42.66 4.79
2700 2737 0.319555 CGGACGAGACTTTCAAGGCA 60.320 55.000 0.00 0.00 36.14 4.75
2922 2959 1.410882 GTGACAGATAGTGAGGCCTCC 59.589 57.143 29.95 20.23 0.00 4.30
3195 3232 5.765510 ACCAAGATAAAGACATTGCCCATA 58.234 37.500 0.00 0.00 0.00 2.74
3255 3292 6.540914 TCGGAAAGTTTACAGTTGACAAAGAT 59.459 34.615 0.00 0.00 0.00 2.40
3324 3361 2.357637 CGGAAACAAGAGCAACCTGAAA 59.642 45.455 0.00 0.00 0.00 2.69
3348 3385 4.037446 ACTTTAGCTGGATTTGTCGCAAAA 59.963 37.500 0.00 0.00 0.00 2.44
3353 3390 3.119708 GCTGGATTTGTCGCAAAAGAGAT 60.120 43.478 8.65 0.00 0.00 2.75
3361 3398 1.431036 GCAAAAGAGATGCGAGGGC 59.569 57.895 0.00 0.00 40.52 5.19
3372 3409 0.603707 TGCGAGGGCTTCTTCAACTG 60.604 55.000 0.00 0.00 40.82 3.16
3396 3433 4.582869 TGGTTCACATGAGAAATCTGAGG 58.417 43.478 7.17 0.00 0.00 3.86
3442 3479 5.382303 CAGTTGCAAATGGAAGTAACTACG 58.618 41.667 18.84 0.00 38.37 3.51
3446 3483 3.181510 GCAAATGGAAGTAACTACGCCAG 60.182 47.826 9.38 0.00 38.34 4.85
3537 3574 9.381033 CTATCACTTGATTCAGAAGAATGTTCT 57.619 33.333 0.00 0.00 44.30 3.01
3538 3575 7.664082 TCACTTGATTCAGAAGAATGTTCTC 57.336 36.000 0.00 0.00 44.30 2.87
3646 3683 3.658705 ACTCCAGTTACCCCCATTTGTTA 59.341 43.478 0.00 0.00 0.00 2.41
3700 3737 3.644861 TCAGCTACTCTGACACGGA 57.355 52.632 0.00 0.00 46.34 4.69
3741 3778 9.635520 CTGATCAATTTGAGAAACTTGCTTTAT 57.364 29.630 5.21 0.00 0.00 1.40
3756 3793 4.252878 TGCTTTATCTCAAGTTGATCGCA 58.747 39.130 5.91 6.43 0.00 5.10
3758 3795 5.163824 TGCTTTATCTCAAGTTGATCGCAAG 60.164 40.000 5.91 8.06 34.01 4.01
3841 3878 2.859806 GCAGTGCAAAGTTTCGCTTCAT 60.860 45.455 11.09 0.00 36.17 2.57
3891 3928 1.276421 CCGAACCTTGTCTCACTCCAT 59.724 52.381 0.00 0.00 0.00 3.41
3984 4021 1.277557 GTTGACTCTGGAGTGCCTGAT 59.722 52.381 8.06 0.00 42.66 2.90
4026 4063 1.480137 CAAGCAACAAAGAACCACCCA 59.520 47.619 0.00 0.00 0.00 4.51
4073 4110 1.949465 AGTGGTGTTCGAGTGGAAAC 58.051 50.000 0.00 0.00 36.14 2.78
4077 4114 1.574134 GTGTTCGAGTGGAAACCGAA 58.426 50.000 0.00 0.00 39.58 4.30
4101 4138 1.009829 CGGGGAATGAAGAAGCTTCG 58.990 55.000 20.43 1.61 0.00 3.79
4145 4182 7.448748 AAATATGTGTAGTCCAACCAAGTTC 57.551 36.000 0.00 0.00 0.00 3.01
4152 4189 2.076863 GTCCAACCAAGTTCGGATGAG 58.923 52.381 4.07 0.00 30.62 2.90
4164 4201 0.394565 CGGATGAGGGACTGGATTCC 59.605 60.000 0.00 0.00 41.55 3.01
4221 4258 0.238289 CGCGGCTTCAAGTGATTGTT 59.762 50.000 0.00 0.00 0.00 2.83
4224 4261 2.666619 GCGGCTTCAAGTGATTGTTCAG 60.667 50.000 0.00 0.00 30.85 3.02
4301 4338 4.815533 ACTGCTACAGTGATGATTCAGT 57.184 40.909 0.00 0.00 43.63 3.41
4302 4339 4.753233 ACTGCTACAGTGATGATTCAGTC 58.247 43.478 0.00 0.00 43.63 3.51
4320 4357 4.129380 CAGTCTGGACACACAAATCAGAA 58.871 43.478 3.51 0.00 36.42 3.02
4342 4379 4.005487 ACAGAATAGATGATGAGCTGCC 57.995 45.455 0.00 0.00 0.00 4.85
4344 4381 2.028294 AGAATAGATGATGAGCTGCCGG 60.028 50.000 0.00 0.00 0.00 6.13
4397 4496 3.911868 TCACCATGCTGCAAATTGTAAC 58.088 40.909 6.36 0.00 0.00 2.50
4418 4517 9.295825 TGTAACATAATCTTTGTTTCCATGTCT 57.704 29.630 0.00 0.00 38.26 3.41
4443 4542 4.513442 TCCACCACTTGCAACTGTATATC 58.487 43.478 0.00 0.00 0.00 1.63
4448 4547 4.699735 CCACTTGCAACTGTATATCCACAA 59.300 41.667 0.00 0.00 0.00 3.33
4450 4549 5.412594 CACTTGCAACTGTATATCCACAACT 59.587 40.000 0.00 0.00 0.00 3.16
4464 4563 3.761218 TCCACAACTTGCAAGAAACAGAA 59.239 39.130 32.50 9.38 0.00 3.02
4471 4570 1.032014 GCAAGAAACAGAACAGGGCA 58.968 50.000 0.00 0.00 0.00 5.36
4482 4581 1.821136 GAACAGGGCAAAAGCTAGCAT 59.179 47.619 18.83 0.65 0.00 3.79
4486 4585 4.792068 ACAGGGCAAAAGCTAGCATTATA 58.208 39.130 18.83 0.00 0.00 0.98
4487 4586 4.823989 ACAGGGCAAAAGCTAGCATTATAG 59.176 41.667 18.83 6.43 0.00 1.31
4544 4643 0.900421 GGTTAAGTCCTACGCCCACT 59.100 55.000 0.00 0.00 0.00 4.00
4555 4654 1.189524 ACGCCCACTACACTGCCTTA 61.190 55.000 0.00 0.00 0.00 2.69
4556 4655 0.739813 CGCCCACTACACTGCCTTAC 60.740 60.000 0.00 0.00 0.00 2.34
4557 4656 0.392595 GCCCACTACACTGCCTTACC 60.393 60.000 0.00 0.00 0.00 2.85
4558 4657 0.108329 CCCACTACACTGCCTTACCG 60.108 60.000 0.00 0.00 0.00 4.02
4559 4658 0.892755 CCACTACACTGCCTTACCGA 59.107 55.000 0.00 0.00 0.00 4.69
4560 4659 1.274167 CCACTACACTGCCTTACCGAA 59.726 52.381 0.00 0.00 0.00 4.30
4561 4660 2.289195 CCACTACACTGCCTTACCGAAA 60.289 50.000 0.00 0.00 0.00 3.46
4562 4661 3.395639 CACTACACTGCCTTACCGAAAA 58.604 45.455 0.00 0.00 0.00 2.29
4563 4662 3.810941 CACTACACTGCCTTACCGAAAAA 59.189 43.478 0.00 0.00 0.00 1.94
4565 4664 2.227194 ACACTGCCTTACCGAAAAAGG 58.773 47.619 6.15 6.15 45.36 3.11
4566 4665 1.539827 CACTGCCTTACCGAAAAAGGG 59.460 52.381 10.98 0.00 43.21 3.95
4567 4666 1.144298 ACTGCCTTACCGAAAAAGGGT 59.856 47.619 10.98 0.00 43.21 4.34
4568 4667 2.235891 CTGCCTTACCGAAAAAGGGTT 58.764 47.619 10.98 0.00 43.21 4.11
4569 4668 2.626266 CTGCCTTACCGAAAAAGGGTTT 59.374 45.455 10.98 0.00 43.21 3.27
4570 4669 2.624364 TGCCTTACCGAAAAAGGGTTTC 59.376 45.455 10.98 0.00 43.21 2.78
4571 4670 2.029649 GCCTTACCGAAAAAGGGTTTCC 60.030 50.000 10.98 0.00 43.21 3.13
4572 4671 2.559668 CCTTACCGAAAAAGGGTTTCCC 59.440 50.000 0.00 0.00 45.90 3.97
4589 4688 3.274601 CCCCCGCTTTGTATTCCAA 57.725 52.632 0.00 0.00 0.00 3.53
4590 4689 1.551452 CCCCCGCTTTGTATTCCAAA 58.449 50.000 0.00 0.00 40.71 3.28
4671 4770 0.319728 TCTCTCTGGAGCAAGCACAC 59.680 55.000 0.00 0.00 39.31 3.82
4674 4773 2.281070 CTGGAGCAAGCACACGGT 60.281 61.111 0.00 0.00 0.00 4.83
4762 4861 1.064946 CTCCTCGGACATCGTCAGC 59.935 63.158 0.00 0.00 40.32 4.26
4770 4869 2.507769 CATCGTCAGCAGCTCGCA 60.508 61.111 10.16 0.00 46.13 5.10
4783 4882 2.284684 CAGCTCGCAGAAGATCAATGTC 59.715 50.000 0.00 0.00 34.09 3.06
4786 4885 1.554617 TCGCAGAAGATCAATGTCCCA 59.445 47.619 0.00 0.00 0.00 4.37
4812 4911 2.992689 TAGCGGCACCTCGAACCA 60.993 61.111 1.45 0.00 0.00 3.67
4972 5071 2.298163 CTGCCACTTCTTTGCCATCTTT 59.702 45.455 0.00 0.00 0.00 2.52
5026 5138 1.834263 GCTCCTCCTTTCTTGGCTAGA 59.166 52.381 0.00 0.00 0.00 2.43
5038 5151 0.830648 TGGCTAGATGTAGTGGTGCC 59.169 55.000 0.00 0.00 39.33 5.01
5076 5192 5.488262 TTCTGGATGAACTGAAGTGATGA 57.512 39.130 0.00 0.00 0.00 2.92
5077 5193 5.488262 TCTGGATGAACTGAAGTGATGAA 57.512 39.130 0.00 0.00 0.00 2.57
5078 5194 5.485620 TCTGGATGAACTGAAGTGATGAAG 58.514 41.667 0.00 0.00 0.00 3.02
5079 5195 5.012458 TCTGGATGAACTGAAGTGATGAAGT 59.988 40.000 0.00 0.00 0.00 3.01
5080 5196 4.999311 TGGATGAACTGAAGTGATGAAGTG 59.001 41.667 0.00 0.00 0.00 3.16
5081 5197 5.221702 TGGATGAACTGAAGTGATGAAGTGA 60.222 40.000 0.00 0.00 0.00 3.41
5082 5198 5.879223 GGATGAACTGAAGTGATGAAGTGAT 59.121 40.000 0.00 0.00 0.00 3.06
5083 5199 6.183360 GGATGAACTGAAGTGATGAAGTGATG 60.183 42.308 0.00 0.00 0.00 3.07
5084 5200 4.999311 TGAACTGAAGTGATGAAGTGATGG 59.001 41.667 0.00 0.00 0.00 3.51
5085 5201 4.630644 ACTGAAGTGATGAAGTGATGGT 57.369 40.909 0.00 0.00 0.00 3.55
5086 5202 4.321718 ACTGAAGTGATGAAGTGATGGTG 58.678 43.478 0.00 0.00 0.00 4.17
5087 5203 3.678289 TGAAGTGATGAAGTGATGGTGG 58.322 45.455 0.00 0.00 0.00 4.61
5088 5204 3.072915 TGAAGTGATGAAGTGATGGTGGT 59.927 43.478 0.00 0.00 0.00 4.16
5089 5205 3.063510 AGTGATGAAGTGATGGTGGTG 57.936 47.619 0.00 0.00 0.00 4.17
5090 5206 1.470098 GTGATGAAGTGATGGTGGTGC 59.530 52.381 0.00 0.00 0.00 5.01
5091 5207 1.098050 GATGAAGTGATGGTGGTGCC 58.902 55.000 0.00 0.00 37.90 5.01
5151 5286 2.762535 TGCAGTTTAGGTCCAGCTAC 57.237 50.000 0.00 0.00 0.00 3.58
5170 5305 1.499007 ACCATGACAAGTTGGGAAGGT 59.501 47.619 7.96 7.11 37.32 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.727394 TGCAAACTTATCCCTTTACACCTAT 58.273 36.000 0.00 0.00 0.00 2.57
93 98 6.710597 TCCACACTTGCTATACTAACCTAG 57.289 41.667 0.00 0.00 0.00 3.02
129 134 5.886609 TCTTAGGGACAATTCCACAAATCA 58.113 37.500 0.00 0.00 44.98 2.57
166 171 5.927281 AAAATCTTGCTACCGGTCTAGTA 57.073 39.130 12.40 0.00 0.00 1.82
176 181 6.372937 GCCTCTCCCATATAAAATCTTGCTAC 59.627 42.308 0.00 0.00 0.00 3.58
184 190 4.751028 GCAGTGGCCTCTCCCATATAAAAT 60.751 45.833 3.81 0.00 37.20 1.82
299 307 8.971073 GGCCAATATATCTTAATGCTATGGTTT 58.029 33.333 0.00 0.00 0.00 3.27
368 377 7.417342 GCATTAGAGGACAAGAGTGATAGAAGT 60.417 40.741 0.00 0.00 0.00 3.01
384 393 7.360113 TGTATGTTGACTATGCATTAGAGGA 57.640 36.000 3.54 0.00 0.00 3.71
449 465 7.068839 TGTGGTTATGTTGTTATTCTTTGGTGT 59.931 33.333 0.00 0.00 0.00 4.16
458 474 8.845413 AAATTGCATGTGGTTATGTTGTTATT 57.155 26.923 0.00 0.00 0.00 1.40
460 476 9.764363 TTTAAATTGCATGTGGTTATGTTGTTA 57.236 25.926 0.00 0.00 0.00 2.41
476 492 9.562583 GAATTACTACGATTGGTTTAAATTGCA 57.437 29.630 0.00 0.00 0.00 4.08
497 513 9.130661 CAATGTCCTATGGTAATTGGTGAATTA 57.869 33.333 0.00 0.00 33.63 1.40
514 530 0.035152 CACCTGCAGGCAATGTCCTA 60.035 55.000 33.06 0.00 39.32 2.94
515 531 1.303888 CACCTGCAGGCAATGTCCT 60.304 57.895 33.06 7.63 39.32 3.85
516 532 1.181098 AACACCTGCAGGCAATGTCC 61.181 55.000 33.06 0.00 39.32 4.02
517 533 0.038892 CAACACCTGCAGGCAATGTC 60.039 55.000 33.06 0.00 39.32 3.06
518 534 0.467844 TCAACACCTGCAGGCAATGT 60.468 50.000 33.06 25.37 39.32 2.71
519 535 0.892755 ATCAACACCTGCAGGCAATG 59.107 50.000 33.06 25.78 39.32 2.82
520 536 0.892755 CATCAACACCTGCAGGCAAT 59.107 50.000 33.06 15.50 39.32 3.56
521 537 0.178995 TCATCAACACCTGCAGGCAA 60.179 50.000 33.06 13.75 39.32 4.52
522 538 0.178995 TTCATCAACACCTGCAGGCA 60.179 50.000 33.06 11.88 39.32 4.75
523 539 0.524862 CTTCATCAACACCTGCAGGC 59.475 55.000 33.06 0.00 39.32 4.85
524 540 2.189594 TCTTCATCAACACCTGCAGG 57.810 50.000 31.60 31.60 42.17 4.85
525 541 3.126514 GTCATCTTCATCAACACCTGCAG 59.873 47.826 6.78 6.78 0.00 4.41
526 542 3.076621 GTCATCTTCATCAACACCTGCA 58.923 45.455 0.00 0.00 0.00 4.41
527 543 3.076621 TGTCATCTTCATCAACACCTGC 58.923 45.455 0.00 0.00 0.00 4.85
528 544 4.572909 TCTGTCATCTTCATCAACACCTG 58.427 43.478 0.00 0.00 0.00 4.00
529 545 4.285517 ACTCTGTCATCTTCATCAACACCT 59.714 41.667 0.00 0.00 0.00 4.00
530 546 4.573900 ACTCTGTCATCTTCATCAACACC 58.426 43.478 0.00 0.00 0.00 4.16
531 547 5.468072 ACAACTCTGTCATCTTCATCAACAC 59.532 40.000 0.00 0.00 0.00 3.32
532 548 5.614308 ACAACTCTGTCATCTTCATCAACA 58.386 37.500 0.00 0.00 0.00 3.33
533 549 6.369005 CAACAACTCTGTCATCTTCATCAAC 58.631 40.000 0.00 0.00 33.45 3.18
534 550 5.471116 CCAACAACTCTGTCATCTTCATCAA 59.529 40.000 0.00 0.00 33.45 2.57
535 551 4.999311 CCAACAACTCTGTCATCTTCATCA 59.001 41.667 0.00 0.00 33.45 3.07
536 552 4.142730 GCCAACAACTCTGTCATCTTCATC 60.143 45.833 0.00 0.00 33.45 2.92
537 553 3.755378 GCCAACAACTCTGTCATCTTCAT 59.245 43.478 0.00 0.00 33.45 2.57
538 554 3.141398 GCCAACAACTCTGTCATCTTCA 58.859 45.455 0.00 0.00 33.45 3.02
539 555 2.158449 CGCCAACAACTCTGTCATCTTC 59.842 50.000 0.00 0.00 33.45 2.87
540 556 2.146342 CGCCAACAACTCTGTCATCTT 58.854 47.619 0.00 0.00 33.45 2.40
541 557 1.609061 CCGCCAACAACTCTGTCATCT 60.609 52.381 0.00 0.00 33.45 2.90
542 558 0.798776 CCGCCAACAACTCTGTCATC 59.201 55.000 0.00 0.00 33.45 2.92
543 559 0.606401 CCCGCCAACAACTCTGTCAT 60.606 55.000 0.00 0.00 33.45 3.06
544 560 1.227823 CCCGCCAACAACTCTGTCA 60.228 57.895 0.00 0.00 33.45 3.58
545 561 1.966451 CCCCGCCAACAACTCTGTC 60.966 63.158 0.00 0.00 33.45 3.51
546 562 2.113139 CCCCGCCAACAACTCTGT 59.887 61.111 0.00 0.00 37.39 3.41
547 563 2.113139 ACCCCGCCAACAACTCTG 59.887 61.111 0.00 0.00 0.00 3.35
548 564 2.113139 CACCCCGCCAACAACTCT 59.887 61.111 0.00 0.00 0.00 3.24
549 565 2.203294 ACACCCCGCCAACAACTC 60.203 61.111 0.00 0.00 0.00 3.01
550 566 2.203294 GACACCCCGCCAACAACT 60.203 61.111 0.00 0.00 0.00 3.16
551 567 3.656045 CGACACCCCGCCAACAAC 61.656 66.667 0.00 0.00 0.00 3.32
552 568 4.939368 CCGACACCCCGCCAACAA 62.939 66.667 0.00 0.00 0.00 2.83
554 570 4.629523 TTCCGACACCCCGCCAAC 62.630 66.667 0.00 0.00 0.00 3.77
555 571 4.323477 CTTCCGACACCCCGCCAA 62.323 66.667 0.00 0.00 0.00 4.52
559 575 4.078516 GACCCTTCCGACACCCCG 62.079 72.222 0.00 0.00 0.00 5.73
560 576 2.222013 AAGACCCTTCCGACACCCC 61.222 63.158 0.00 0.00 0.00 4.95
561 577 1.003718 CAAGACCCTTCCGACACCC 60.004 63.158 0.00 0.00 0.00 4.61
562 578 0.320508 GACAAGACCCTTCCGACACC 60.321 60.000 0.00 0.00 0.00 4.16
563 579 0.680061 AGACAAGACCCTTCCGACAC 59.320 55.000 0.00 0.00 0.00 3.67
564 580 1.891150 GTAGACAAGACCCTTCCGACA 59.109 52.381 0.00 0.00 0.00 4.35
565 581 1.891150 TGTAGACAAGACCCTTCCGAC 59.109 52.381 0.00 0.00 0.00 4.79
566 582 1.891150 GTGTAGACAAGACCCTTCCGA 59.109 52.381 0.00 0.00 0.00 4.55
567 583 1.616865 TGTGTAGACAAGACCCTTCCG 59.383 52.381 0.00 0.00 0.00 4.30
568 584 3.983044 ATGTGTAGACAAGACCCTTCC 57.017 47.619 0.00 0.00 35.11 3.46
569 585 3.437049 GCAATGTGTAGACAAGACCCTTC 59.563 47.826 0.00 0.00 35.11 3.46
570 586 3.412386 GCAATGTGTAGACAAGACCCTT 58.588 45.455 0.00 0.00 35.11 3.95
571 587 2.612972 CGCAATGTGTAGACAAGACCCT 60.613 50.000 0.00 0.00 35.11 4.34
572 588 1.732259 CGCAATGTGTAGACAAGACCC 59.268 52.381 0.00 0.00 35.11 4.46
573 589 1.732259 CCGCAATGTGTAGACAAGACC 59.268 52.381 0.00 0.00 35.11 3.85
574 590 2.157668 CACCGCAATGTGTAGACAAGAC 59.842 50.000 0.00 0.00 35.11 3.01
575 591 2.036604 TCACCGCAATGTGTAGACAAGA 59.963 45.455 0.00 0.00 37.51 3.02
576 592 2.157668 GTCACCGCAATGTGTAGACAAG 59.842 50.000 0.00 0.00 37.51 3.16
577 593 2.139917 GTCACCGCAATGTGTAGACAA 58.860 47.619 0.00 0.00 37.51 3.18
578 594 1.606994 GGTCACCGCAATGTGTAGACA 60.607 52.381 14.57 0.00 37.51 3.41
579 595 1.076332 GGTCACCGCAATGTGTAGAC 58.924 55.000 7.15 7.15 37.51 2.59
580 596 0.389296 CGGTCACCGCAATGTGTAGA 60.389 55.000 1.50 0.00 41.17 2.59
581 597 1.358725 CCGGTCACCGCAATGTGTAG 61.359 60.000 12.05 0.00 46.86 2.74
582 598 1.374885 CCGGTCACCGCAATGTGTA 60.375 57.895 12.05 0.00 46.86 2.90
583 599 2.668212 CCGGTCACCGCAATGTGT 60.668 61.111 12.05 0.00 46.86 3.72
584 600 3.430862 CCCGGTCACCGCAATGTG 61.431 66.667 12.05 0.00 46.86 3.21
585 601 2.478335 ATTCCCGGTCACCGCAATGT 62.478 55.000 12.05 0.00 46.86 2.71
586 602 1.748879 ATTCCCGGTCACCGCAATG 60.749 57.895 12.05 0.00 46.86 2.82
587 603 1.748879 CATTCCCGGTCACCGCAAT 60.749 57.895 12.05 8.34 46.86 3.56
588 604 2.359354 CATTCCCGGTCACCGCAA 60.359 61.111 12.05 5.95 46.86 4.85
589 605 3.599285 GACATTCCCGGTCACCGCA 62.599 63.158 12.05 0.00 46.86 5.69
590 606 2.818274 GACATTCCCGGTCACCGC 60.818 66.667 12.05 0.00 46.86 5.68
591 607 0.810031 GATGACATTCCCGGTCACCG 60.810 60.000 10.12 10.12 46.99 4.94
592 608 0.810031 CGATGACATTCCCGGTCACC 60.810 60.000 0.00 0.00 46.99 4.02
593 609 0.810031 CCGATGACATTCCCGGTCAC 60.810 60.000 0.00 0.00 46.99 3.67
595 611 4.438346 CCGATGACATTCCCGGTC 57.562 61.111 0.00 0.00 37.40 4.79
597 613 1.523711 CCACCGATGACATTCCCGG 60.524 63.158 11.42 11.42 46.65 5.73
598 614 2.180204 GCCACCGATGACATTCCCG 61.180 63.158 0.00 0.00 0.00 5.14
599 615 2.180204 CGCCACCGATGACATTCCC 61.180 63.158 0.00 0.00 36.29 3.97
600 616 1.153449 TCGCCACCGATGACATTCC 60.153 57.895 0.00 0.00 38.82 3.01
601 617 2.006772 GTCGCCACCGATGACATTC 58.993 57.895 0.00 0.00 46.38 2.67
602 618 4.201951 GTCGCCACCGATGACATT 57.798 55.556 0.00 0.00 46.38 2.71
617 633 4.388499 ACCCCATGTGTCGCCGTC 62.388 66.667 0.00 0.00 0.00 4.79
618 634 4.697756 CACCCCATGTGTCGCCGT 62.698 66.667 0.00 0.00 40.26 5.68
619 635 4.386951 TCACCCCATGTGTCGCCG 62.387 66.667 0.00 0.00 45.61 6.46
620 636 2.746277 GTCACCCCATGTGTCGCC 60.746 66.667 0.00 0.00 45.61 5.54
621 637 1.369091 GATGTCACCCCATGTGTCGC 61.369 60.000 0.00 0.00 45.61 5.19
622 638 0.036483 TGATGTCACCCCATGTGTCG 60.036 55.000 0.00 0.00 45.61 4.35
623 639 1.742761 CTGATGTCACCCCATGTGTC 58.257 55.000 0.00 0.00 45.61 3.67
624 640 0.322816 GCTGATGTCACCCCATGTGT 60.323 55.000 0.00 0.00 45.61 3.72
625 641 1.371337 CGCTGATGTCACCCCATGTG 61.371 60.000 0.00 0.00 46.88 3.21
626 642 1.078214 CGCTGATGTCACCCCATGT 60.078 57.895 0.00 0.00 0.00 3.21
627 643 1.820906 CCGCTGATGTCACCCCATG 60.821 63.158 0.00 0.00 0.00 3.66
628 644 2.591753 CCGCTGATGTCACCCCAT 59.408 61.111 0.00 0.00 0.00 4.00
629 645 3.716195 CCCGCTGATGTCACCCCA 61.716 66.667 0.00 0.00 0.00 4.96
630 646 2.876368 CTTCCCGCTGATGTCACCCC 62.876 65.000 0.00 0.00 0.00 4.95
631 647 1.450312 CTTCCCGCTGATGTCACCC 60.450 63.158 0.00 0.00 0.00 4.61
632 648 1.450312 CCTTCCCGCTGATGTCACC 60.450 63.158 0.00 0.00 0.00 4.02
633 649 0.036388 TTCCTTCCCGCTGATGTCAC 60.036 55.000 0.00 0.00 0.00 3.67
634 650 0.250234 CTTCCTTCCCGCTGATGTCA 59.750 55.000 0.00 0.00 0.00 3.58
635 651 0.250513 ACTTCCTTCCCGCTGATGTC 59.749 55.000 0.00 0.00 0.00 3.06
636 652 1.482593 CTACTTCCTTCCCGCTGATGT 59.517 52.381 0.00 0.00 0.00 3.06
637 653 1.808133 GCTACTTCCTTCCCGCTGATG 60.808 57.143 0.00 0.00 0.00 3.07
638 654 0.466124 GCTACTTCCTTCCCGCTGAT 59.534 55.000 0.00 0.00 0.00 2.90
639 655 1.614241 GGCTACTTCCTTCCCGCTGA 61.614 60.000 0.00 0.00 0.00 4.26
640 656 1.153349 GGCTACTTCCTTCCCGCTG 60.153 63.158 0.00 0.00 0.00 5.18
641 657 2.722201 CGGCTACTTCCTTCCCGCT 61.722 63.158 0.00 0.00 31.87 5.52
642 658 2.202892 CGGCTACTTCCTTCCCGC 60.203 66.667 0.00 0.00 31.87 6.13
643 659 2.202892 GCGGCTACTTCCTTCCCG 60.203 66.667 0.00 0.00 41.72 5.14
644 660 2.202892 CGCGGCTACTTCCTTCCC 60.203 66.667 0.00 0.00 0.00 3.97
645 661 2.890961 GCGCGGCTACTTCCTTCC 60.891 66.667 8.83 0.00 0.00 3.46
646 662 3.255379 CGCGCGGCTACTTCCTTC 61.255 66.667 24.84 0.00 0.00 3.46
647 663 4.065281 ACGCGCGGCTACTTCCTT 62.065 61.111 35.22 5.42 0.00 3.36
648 664 4.796231 CACGCGCGGCTACTTCCT 62.796 66.667 35.22 6.31 0.00 3.36
659 675 4.973360 TCTTTTTGCCGCACGCGC 62.973 61.111 5.73 0.00 42.08 6.86
660 676 2.796617 CTCTTTTTGCCGCACGCG 60.797 61.111 3.53 3.53 42.08 6.01
661 677 1.725973 GACTCTTTTTGCCGCACGC 60.726 57.895 0.00 0.00 38.31 5.34
662 678 1.082104 GGACTCTTTTTGCCGCACG 60.082 57.895 0.00 0.00 0.00 5.34
663 679 1.082104 CGGACTCTTTTTGCCGCAC 60.082 57.895 0.00 0.00 37.08 5.34
664 680 2.258013 CCGGACTCTTTTTGCCGCA 61.258 57.895 0.00 0.00 42.29 5.69
665 681 1.964373 TCCGGACTCTTTTTGCCGC 60.964 57.895 0.00 0.00 42.29 6.53
666 682 1.866925 GTCCGGACTCTTTTTGCCG 59.133 57.895 27.64 0.00 43.20 5.69
667 683 0.601841 TCGTCCGGACTCTTTTTGCC 60.602 55.000 30.92 1.97 0.00 4.52
668 684 0.790814 CTCGTCCGGACTCTTTTTGC 59.209 55.000 30.92 2.76 0.00 3.68
669 685 2.150397 ACTCGTCCGGACTCTTTTTG 57.850 50.000 30.92 14.47 0.00 2.44
670 686 2.904697 AACTCGTCCGGACTCTTTTT 57.095 45.000 30.92 14.21 0.00 1.94
671 687 2.904697 AAACTCGTCCGGACTCTTTT 57.095 45.000 30.92 21.84 0.00 2.27
672 688 2.752121 GAAAACTCGTCCGGACTCTTT 58.248 47.619 30.92 22.11 0.00 2.52
673 689 1.335689 CGAAAACTCGTCCGGACTCTT 60.336 52.381 30.92 16.29 0.00 2.85
674 690 0.240411 CGAAAACTCGTCCGGACTCT 59.760 55.000 30.92 11.13 0.00 3.24
675 691 0.731855 CCGAAAACTCGTCCGGACTC 60.732 60.000 30.92 19.32 44.29 3.36
676 692 1.288127 CCGAAAACTCGTCCGGACT 59.712 57.895 30.92 12.42 44.29 3.85
677 693 2.378084 GCCGAAAACTCGTCCGGAC 61.378 63.158 25.28 25.28 44.29 4.79
678 694 2.048877 GCCGAAAACTCGTCCGGA 60.049 61.111 0.00 0.00 44.29 5.14
679 695 3.116531 GGCCGAAAACTCGTCCGG 61.117 66.667 0.00 0.00 44.34 5.14
681 697 2.356673 ACGGCCGAAAACTCGTCC 60.357 61.111 35.90 0.00 0.00 4.79
682 698 2.851104 CACGGCCGAAAACTCGTC 59.149 61.111 35.90 0.00 33.31 4.20
683 699 3.343421 GCACGGCCGAAAACTCGT 61.343 61.111 35.90 2.60 36.19 4.18
684 700 4.424430 CGCACGGCCGAAAACTCG 62.424 66.667 35.90 19.78 0.00 4.18
685 701 3.343421 ACGCACGGCCGAAAACTC 61.343 61.111 35.90 12.17 0.00 3.01
686 702 3.645975 CACGCACGGCCGAAAACT 61.646 61.111 35.90 5.52 0.00 2.66
687 703 4.676586 CCACGCACGGCCGAAAAC 62.677 66.667 35.90 16.48 0.00 2.43
688 704 4.912485 TCCACGCACGGCCGAAAA 62.912 61.111 35.90 6.59 0.00 2.29
694 710 4.760047 ATCACCTCCACGCACGGC 62.760 66.667 0.00 0.00 0.00 5.68
695 711 2.815211 CATCACCTCCACGCACGG 60.815 66.667 0.00 0.00 0.00 4.94
696 712 2.048222 ACATCACCTCCACGCACG 60.048 61.111 0.00 0.00 0.00 5.34
697 713 0.391661 ATCACATCACCTCCACGCAC 60.392 55.000 0.00 0.00 0.00 5.34
698 714 0.391528 CATCACATCACCTCCACGCA 60.392 55.000 0.00 0.00 0.00 5.24
699 715 1.091771 CCATCACATCACCTCCACGC 61.092 60.000 0.00 0.00 0.00 5.34
700 716 0.462581 CCCATCACATCACCTCCACG 60.463 60.000 0.00 0.00 0.00 4.94
701 717 0.107017 CCCCATCACATCACCTCCAC 60.107 60.000 0.00 0.00 0.00 4.02
702 718 1.281199 CCCCCATCACATCACCTCCA 61.281 60.000 0.00 0.00 0.00 3.86
703 719 0.988145 TCCCCCATCACATCACCTCC 60.988 60.000 0.00 0.00 0.00 4.30
704 720 1.143813 ATCCCCCATCACATCACCTC 58.856 55.000 0.00 0.00 0.00 3.85
705 721 1.216175 CAATCCCCCATCACATCACCT 59.784 52.381 0.00 0.00 0.00 4.00
706 722 1.696063 CAATCCCCCATCACATCACC 58.304 55.000 0.00 0.00 0.00 4.02
707 723 1.035139 GCAATCCCCCATCACATCAC 58.965 55.000 0.00 0.00 0.00 3.06
708 724 0.466007 CGCAATCCCCCATCACATCA 60.466 55.000 0.00 0.00 0.00 3.07
709 725 1.174712 CCGCAATCCCCCATCACATC 61.175 60.000 0.00 0.00 0.00 3.06
710 726 1.152694 CCGCAATCCCCCATCACAT 60.153 57.895 0.00 0.00 0.00 3.21
711 727 1.275421 TACCGCAATCCCCCATCACA 61.275 55.000 0.00 0.00 0.00 3.58
712 728 0.535102 CTACCGCAATCCCCCATCAC 60.535 60.000 0.00 0.00 0.00 3.06
713 729 0.692756 TCTACCGCAATCCCCCATCA 60.693 55.000 0.00 0.00 0.00 3.07
714 730 0.035458 CTCTACCGCAATCCCCCATC 59.965 60.000 0.00 0.00 0.00 3.51
715 731 1.418908 CCTCTACCGCAATCCCCCAT 61.419 60.000 0.00 0.00 0.00 4.00
716 732 2.070039 CCTCTACCGCAATCCCCCA 61.070 63.158 0.00 0.00 0.00 4.96
717 733 1.759459 CTCCTCTACCGCAATCCCCC 61.759 65.000 0.00 0.00 0.00 5.40
718 734 1.049289 ACTCCTCTACCGCAATCCCC 61.049 60.000 0.00 0.00 0.00 4.81
719 735 1.700955 TACTCCTCTACCGCAATCCC 58.299 55.000 0.00 0.00 0.00 3.85
720 736 3.814005 TTTACTCCTCTACCGCAATCC 57.186 47.619 0.00 0.00 0.00 3.01
721 737 6.679327 AAATTTTACTCCTCTACCGCAATC 57.321 37.500 0.00 0.00 0.00 2.67
722 738 6.625081 GCAAAATTTTACTCCTCTACCGCAAT 60.625 38.462 2.44 0.00 0.00 3.56
723 739 5.335348 GCAAAATTTTACTCCTCTACCGCAA 60.335 40.000 2.44 0.00 0.00 4.85
724 740 4.155280 GCAAAATTTTACTCCTCTACCGCA 59.845 41.667 2.44 0.00 0.00 5.69
725 741 4.395231 AGCAAAATTTTACTCCTCTACCGC 59.605 41.667 2.44 0.00 0.00 5.68
726 742 5.642063 TGAGCAAAATTTTACTCCTCTACCG 59.358 40.000 22.68 1.46 31.06 4.02
727 743 6.655425 AGTGAGCAAAATTTTACTCCTCTACC 59.345 38.462 22.68 8.44 31.06 3.18
728 744 7.674471 AGTGAGCAAAATTTTACTCCTCTAC 57.326 36.000 22.68 15.87 31.06 2.59
729 745 9.959721 ATAAGTGAGCAAAATTTTACTCCTCTA 57.040 29.630 22.68 13.68 31.06 2.43
730 746 8.870075 ATAAGTGAGCAAAATTTTACTCCTCT 57.130 30.769 22.68 18.31 31.06 3.69
731 747 8.951243 AGATAAGTGAGCAAAATTTTACTCCTC 58.049 33.333 22.68 16.87 31.06 3.71
732 748 8.870075 AGATAAGTGAGCAAAATTTTACTCCT 57.130 30.769 22.68 17.29 31.06 3.69
733 749 9.989869 GTAGATAAGTGAGCAAAATTTTACTCC 57.010 33.333 22.68 15.80 31.06 3.85
736 752 9.989869 GGAGTAGATAAGTGAGCAAAATTTTAC 57.010 33.333 2.44 0.00 0.00 2.01
737 753 9.174166 GGGAGTAGATAAGTGAGCAAAATTTTA 57.826 33.333 2.44 0.00 0.00 1.52
738 754 7.890655 AGGGAGTAGATAAGTGAGCAAAATTTT 59.109 33.333 0.00 0.00 0.00 1.82
739 755 7.406104 AGGGAGTAGATAAGTGAGCAAAATTT 58.594 34.615 0.00 0.00 0.00 1.82
740 756 6.963322 AGGGAGTAGATAAGTGAGCAAAATT 58.037 36.000 0.00 0.00 0.00 1.82
741 757 6.408662 GGAGGGAGTAGATAAGTGAGCAAAAT 60.409 42.308 0.00 0.00 0.00 1.82
742 758 5.104900 GGAGGGAGTAGATAAGTGAGCAAAA 60.105 44.000 0.00 0.00 0.00 2.44
743 759 4.406003 GGAGGGAGTAGATAAGTGAGCAAA 59.594 45.833 0.00 0.00 0.00 3.68
744 760 3.961408 GGAGGGAGTAGATAAGTGAGCAA 59.039 47.826 0.00 0.00 0.00 3.91
745 761 3.567397 GGAGGGAGTAGATAAGTGAGCA 58.433 50.000 0.00 0.00 0.00 4.26
746 762 2.554893 CGGAGGGAGTAGATAAGTGAGC 59.445 54.545 0.00 0.00 0.00 4.26
747 763 3.816523 GACGGAGGGAGTAGATAAGTGAG 59.183 52.174 0.00 0.00 0.00 3.51
748 764 3.434739 GGACGGAGGGAGTAGATAAGTGA 60.435 52.174 0.00 0.00 0.00 3.41
749 765 2.885894 GGACGGAGGGAGTAGATAAGTG 59.114 54.545 0.00 0.00 0.00 3.16
750 766 2.158490 GGGACGGAGGGAGTAGATAAGT 60.158 54.545 0.00 0.00 0.00 2.24
751 767 2.158505 TGGGACGGAGGGAGTAGATAAG 60.159 54.545 0.00 0.00 0.00 1.73
752 768 1.854939 TGGGACGGAGGGAGTAGATAA 59.145 52.381 0.00 0.00 0.00 1.75
753 769 1.526315 TGGGACGGAGGGAGTAGATA 58.474 55.000 0.00 0.00 0.00 1.98
754 770 0.861155 ATGGGACGGAGGGAGTAGAT 59.139 55.000 0.00 0.00 0.00 1.98
755 771 1.526315 TATGGGACGGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
756 772 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
757 773 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
758 774 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
759 775 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
760 776 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
761 777 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
762 778 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
763 779 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
764 780 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
765 781 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
792 808 8.483758 CCCCTAAATTCTACACTACACTAATGT 58.516 37.037 0.00 0.00 43.30 2.71
793 809 8.701895 TCCCCTAAATTCTACACTACACTAATG 58.298 37.037 0.00 0.00 0.00 1.90
794 810 8.849543 TCCCCTAAATTCTACACTACACTAAT 57.150 34.615 0.00 0.00 0.00 1.73
795 811 8.849543 ATCCCCTAAATTCTACACTACACTAA 57.150 34.615 0.00 0.00 0.00 2.24
796 812 7.230108 CGATCCCCTAAATTCTACACTACACTA 59.770 40.741 0.00 0.00 0.00 2.74
797 813 6.040616 CGATCCCCTAAATTCTACACTACACT 59.959 42.308 0.00 0.00 0.00 3.55
798 814 6.040166 TCGATCCCCTAAATTCTACACTACAC 59.960 42.308 0.00 0.00 0.00 2.90
799 815 6.131264 TCGATCCCCTAAATTCTACACTACA 58.869 40.000 0.00 0.00 0.00 2.74
800 816 6.645790 TCGATCCCCTAAATTCTACACTAC 57.354 41.667 0.00 0.00 0.00 2.73
801 817 7.850935 AATCGATCCCCTAAATTCTACACTA 57.149 36.000 0.00 0.00 0.00 2.74
802 818 6.749036 AATCGATCCCCTAAATTCTACACT 57.251 37.500 0.00 0.00 0.00 3.55
803 819 7.893658 TCTAATCGATCCCCTAAATTCTACAC 58.106 38.462 0.00 0.00 0.00 2.90
804 820 8.531982 CATCTAATCGATCCCCTAAATTCTACA 58.468 37.037 0.00 0.00 0.00 2.74
805 821 7.492994 GCATCTAATCGATCCCCTAAATTCTAC 59.507 40.741 0.00 0.00 0.00 2.59
806 822 7.556844 GCATCTAATCGATCCCCTAAATTCTA 58.443 38.462 0.00 0.00 0.00 2.10
807 823 6.410540 GCATCTAATCGATCCCCTAAATTCT 58.589 40.000 0.00 0.00 0.00 2.40
808 824 5.292101 CGCATCTAATCGATCCCCTAAATTC 59.708 44.000 0.00 0.00 0.00 2.17
809 825 5.178797 CGCATCTAATCGATCCCCTAAATT 58.821 41.667 0.00 0.00 0.00 1.82
810 826 4.383118 CCGCATCTAATCGATCCCCTAAAT 60.383 45.833 0.00 0.00 0.00 1.40
811 827 3.056107 CCGCATCTAATCGATCCCCTAAA 60.056 47.826 0.00 0.00 0.00 1.85
812 828 2.496070 CCGCATCTAATCGATCCCCTAA 59.504 50.000 0.00 0.00 0.00 2.69
813 829 2.100197 CCGCATCTAATCGATCCCCTA 58.900 52.381 0.00 0.00 0.00 3.53
814 830 0.898320 CCGCATCTAATCGATCCCCT 59.102 55.000 0.00 0.00 0.00 4.79
815 831 0.608640 ACCGCATCTAATCGATCCCC 59.391 55.000 0.00 0.00 0.00 4.81
816 832 2.288825 TGAACCGCATCTAATCGATCCC 60.289 50.000 0.00 0.00 0.00 3.85
817 833 2.731976 GTGAACCGCATCTAATCGATCC 59.268 50.000 0.00 0.00 0.00 3.36
818 834 3.426859 CAGTGAACCGCATCTAATCGATC 59.573 47.826 0.00 0.00 0.00 3.69
819 835 3.068165 TCAGTGAACCGCATCTAATCGAT 59.932 43.478 0.00 0.00 0.00 3.59
820 836 2.425668 TCAGTGAACCGCATCTAATCGA 59.574 45.455 0.00 0.00 0.00 3.59
821 837 2.809446 TCAGTGAACCGCATCTAATCG 58.191 47.619 0.00 0.00 0.00 3.34
822 838 4.184629 ACTTCAGTGAACCGCATCTAATC 58.815 43.478 0.08 0.00 0.00 1.75
823 839 4.207891 ACTTCAGTGAACCGCATCTAAT 57.792 40.909 0.08 0.00 0.00 1.73
824 840 3.678056 ACTTCAGTGAACCGCATCTAA 57.322 42.857 0.08 0.00 0.00 2.10
825 841 4.744570 CTTACTTCAGTGAACCGCATCTA 58.255 43.478 0.08 0.00 0.00 1.98
826 842 3.589988 CTTACTTCAGTGAACCGCATCT 58.410 45.455 0.08 0.00 0.00 2.90
827 843 2.094417 GCTTACTTCAGTGAACCGCATC 59.906 50.000 0.08 0.00 0.00 3.91
828 844 2.076863 GCTTACTTCAGTGAACCGCAT 58.923 47.619 0.08 0.00 0.00 4.73
829 845 1.070134 AGCTTACTTCAGTGAACCGCA 59.930 47.619 0.08 0.00 0.00 5.69
830 846 1.797025 AGCTTACTTCAGTGAACCGC 58.203 50.000 0.08 2.49 0.00 5.68
831 847 3.390135 TCAAGCTTACTTCAGTGAACCG 58.610 45.455 0.08 0.00 32.29 4.44
832 848 5.751243 TTTCAAGCTTACTTCAGTGAACC 57.249 39.130 0.08 0.00 32.29 3.62
833 849 8.634475 AAATTTTCAAGCTTACTTCAGTGAAC 57.366 30.769 0.08 0.00 32.29 3.18
835 851 9.730420 GTAAAATTTTCAAGCTTACTTCAGTGA 57.270 29.630 6.72 0.00 32.29 3.41
836 852 9.736023 AGTAAAATTTTCAAGCTTACTTCAGTG 57.264 29.630 6.72 0.00 32.29 3.66
837 853 9.952188 GAGTAAAATTTTCAAGCTTACTTCAGT 57.048 29.630 6.72 0.00 33.94 3.41
838 854 9.399403 GGAGTAAAATTTTCAAGCTTACTTCAG 57.601 33.333 6.72 0.00 33.94 3.02
839 855 8.908903 TGGAGTAAAATTTTCAAGCTTACTTCA 58.091 29.630 6.72 5.73 36.29 3.02
840 856 9.181805 GTGGAGTAAAATTTTCAAGCTTACTTC 57.818 33.333 6.72 3.12 33.94 3.01
841 857 8.914011 AGTGGAGTAAAATTTTCAAGCTTACTT 58.086 29.630 6.72 0.00 33.94 2.24
842 858 8.465273 AGTGGAGTAAAATTTTCAAGCTTACT 57.535 30.769 6.72 3.34 35.93 2.24
867 883 9.706691 CCAGCCGATCTTTCTTTTAGTATTATA 57.293 33.333 0.00 0.00 0.00 0.98
868 884 8.429641 TCCAGCCGATCTTTCTTTTAGTATTAT 58.570 33.333 0.00 0.00 0.00 1.28
869 885 7.788026 TCCAGCCGATCTTTCTTTTAGTATTA 58.212 34.615 0.00 0.00 0.00 0.98
870 886 6.650120 TCCAGCCGATCTTTCTTTTAGTATT 58.350 36.000 0.00 0.00 0.00 1.89
871 887 6.098409 TCTCCAGCCGATCTTTCTTTTAGTAT 59.902 38.462 0.00 0.00 0.00 2.12
872 888 5.421056 TCTCCAGCCGATCTTTCTTTTAGTA 59.579 40.000 0.00 0.00 0.00 1.82
873 889 4.223032 TCTCCAGCCGATCTTTCTTTTAGT 59.777 41.667 0.00 0.00 0.00 2.24
874 890 4.759782 TCTCCAGCCGATCTTTCTTTTAG 58.240 43.478 0.00 0.00 0.00 1.85
875 891 4.819105 TCTCCAGCCGATCTTTCTTTTA 57.181 40.909 0.00 0.00 0.00 1.52
876 892 3.703001 TCTCCAGCCGATCTTTCTTTT 57.297 42.857 0.00 0.00 0.00 2.27
877 893 3.539604 CATCTCCAGCCGATCTTTCTTT 58.460 45.455 0.00 0.00 0.00 2.52
878 894 2.744494 GCATCTCCAGCCGATCTTTCTT 60.744 50.000 0.00 0.00 0.00 2.52
879 895 1.202627 GCATCTCCAGCCGATCTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
880 896 1.202627 AGCATCTCCAGCCGATCTTTC 60.203 52.381 0.00 0.00 0.00 2.62
881 897 0.835941 AGCATCTCCAGCCGATCTTT 59.164 50.000 0.00 0.00 0.00 2.52
882 898 0.392336 GAGCATCTCCAGCCGATCTT 59.608 55.000 0.00 0.00 0.00 2.40
883 899 2.048601 GAGCATCTCCAGCCGATCT 58.951 57.895 0.00 0.00 0.00 2.75
884 900 4.671406 GAGCATCTCCAGCCGATC 57.329 61.111 0.00 0.00 0.00 3.69
895 911 3.318275 TGGTACGGACAGATTAGAGCATC 59.682 47.826 0.00 0.00 0.00 3.91
896 912 3.296854 TGGTACGGACAGATTAGAGCAT 58.703 45.455 0.00 0.00 0.00 3.79
897 913 2.730382 TGGTACGGACAGATTAGAGCA 58.270 47.619 0.00 0.00 0.00 4.26
898 914 3.318275 TGATGGTACGGACAGATTAGAGC 59.682 47.826 0.00 0.00 0.00 4.09
899 915 4.580995 AGTGATGGTACGGACAGATTAGAG 59.419 45.833 0.00 0.00 0.00 2.43
900 916 4.533815 AGTGATGGTACGGACAGATTAGA 58.466 43.478 0.00 0.00 0.00 2.10
901 917 4.580995 AGAGTGATGGTACGGACAGATTAG 59.419 45.833 0.00 0.00 0.00 1.73
902 918 4.533815 AGAGTGATGGTACGGACAGATTA 58.466 43.478 0.00 0.00 0.00 1.75
903 919 3.366396 AGAGTGATGGTACGGACAGATT 58.634 45.455 0.00 0.00 0.00 2.40
904 920 2.952978 GAGAGTGATGGTACGGACAGAT 59.047 50.000 0.00 0.00 0.00 2.90
905 921 2.026169 AGAGAGTGATGGTACGGACAGA 60.026 50.000 0.00 0.00 0.00 3.41
906 922 2.356382 GAGAGAGTGATGGTACGGACAG 59.644 54.545 0.00 0.00 0.00 3.51
907 923 2.366533 GAGAGAGTGATGGTACGGACA 58.633 52.381 0.00 0.00 0.00 4.02
908 924 1.677052 GGAGAGAGTGATGGTACGGAC 59.323 57.143 0.00 0.00 0.00 4.79
909 925 1.409802 GGGAGAGAGTGATGGTACGGA 60.410 57.143 0.00 0.00 0.00 4.69
910 926 1.033574 GGGAGAGAGTGATGGTACGG 58.966 60.000 0.00 0.00 0.00 4.02
911 927 1.033574 GGGGAGAGAGTGATGGTACG 58.966 60.000 0.00 0.00 0.00 3.67
914 930 0.031616 GGAGGGGAGAGAGTGATGGT 60.032 60.000 0.00 0.00 0.00 3.55
918 934 0.487325 TTGTGGAGGGGAGAGAGTGA 59.513 55.000 0.00 0.00 0.00 3.41
934 950 0.464036 TCAGTGACTGACGGCTTTGT 59.536 50.000 11.93 0.00 35.39 2.83
936 952 0.753262 ACTCAGTGACTGACGGCTTT 59.247 50.000 11.93 0.00 35.39 3.51
942 958 1.067212 ACCGTTGACTCAGTGACTGAC 59.933 52.381 11.93 3.61 35.39 3.51
950 966 0.319900 CTCCACCACCGTTGACTCAG 60.320 60.000 0.00 0.00 0.00 3.35
968 984 1.908340 AAAGCTGGATCCGCTCTGCT 61.908 55.000 24.73 17.07 36.56 4.24
981 997 1.691196 TGGTTCTGGTTCCAAAGCTG 58.309 50.000 0.00 0.00 0.00 4.24
992 1008 0.742281 CGCAGACTCCATGGTTCTGG 60.742 60.000 30.78 22.32 37.66 3.86
997 1013 2.665000 CACCGCAGACTCCATGGT 59.335 61.111 12.58 0.00 0.00 3.55
1093 1109 0.042431 ATGGAGAGAGTGTCCTGCCT 59.958 55.000 0.00 0.00 34.86 4.75
1104 1120 1.039785 CGTCCTGCTGGATGGAGAGA 61.040 60.000 21.12 0.00 45.29 3.10
1515 1537 3.147595 CTCTCGATGCCCACCGGA 61.148 66.667 9.46 0.00 0.00 5.14
1599 1621 3.943691 CCGAACCCCACCACGGAA 61.944 66.667 0.00 0.00 46.94 4.30
1742 1764 0.312102 TACATCGCGCAGGATCTCAG 59.688 55.000 8.75 0.00 0.00 3.35
2141 2178 3.492102 TTATAGTGCTCCATTGCTCCC 57.508 47.619 0.00 0.00 0.00 4.30
2182 2219 5.637406 CAGTAGGATTCTGCTGCTTTTGCT 61.637 45.833 6.13 0.00 44.40 3.91
2250 2287 5.049336 TGTGTTCATTTGGTACACATAACCG 60.049 40.000 12.43 0.00 45.06 4.44
2301 2338 0.251653 ACCGTACCTCCTGAAGAGCA 60.252 55.000 0.00 0.00 41.74 4.26
2482 2519 1.333308 CGCGAAATTGTCATGGCCATA 59.667 47.619 20.30 2.40 0.00 2.74
2548 2585 1.676746 AGCAAGCAGGTCATAGCATG 58.323 50.000 0.00 0.00 33.02 4.06
2604 2641 5.316987 CACCTCCTGATAACAACTTTCCTT 58.683 41.667 0.00 0.00 0.00 3.36
2664 2701 1.226575 CGCAATGTCGTCCTCGCTA 60.227 57.895 0.00 0.00 36.96 4.26
2673 2710 0.732880 AAGTCTCGTCCGCAATGTCG 60.733 55.000 0.00 0.00 0.00 4.35
2685 2722 2.213499 ACAAGTGCCTTGAAAGTCTCG 58.787 47.619 18.22 0.00 43.42 4.04
2700 2737 4.340097 TGTATGATATTCCGGTCGACAAGT 59.660 41.667 18.91 1.59 0.00 3.16
3195 3232 4.040755 AGTGGTACAGAATAATGGCCTCT 58.959 43.478 3.32 0.00 41.80 3.69
3207 3244 4.344978 ACAGATGAGCTAAGTGGTACAGA 58.655 43.478 0.00 0.00 41.80 3.41
3255 3292 5.771153 TCTTGTTTGCATTGTTCAGATCA 57.229 34.783 0.00 0.00 0.00 2.92
3324 3361 3.146066 TGCGACAAATCCAGCTAAAGTT 58.854 40.909 0.00 0.00 0.00 2.66
3348 3385 0.463620 GAAGAAGCCCTCGCATCTCT 59.536 55.000 0.00 0.00 42.08 3.10
3353 3390 0.603707 CAGTTGAAGAAGCCCTCGCA 60.604 55.000 0.00 0.00 37.52 5.10
3356 3393 2.290577 ACCATCAGTTGAAGAAGCCCTC 60.291 50.000 0.00 0.00 0.00 4.30
3361 3398 5.471116 TCATGTGAACCATCAGTTGAAGAAG 59.529 40.000 0.00 0.00 39.40 2.85
3372 3409 5.296283 CCTCAGATTTCTCATGTGAACCATC 59.704 44.000 9.65 10.83 0.00 3.51
3396 3433 3.545703 CCCACACCATATCTTGACCTTC 58.454 50.000 0.00 0.00 0.00 3.46
3537 3574 1.069204 AGCGAACTCAGCAAGTCTTGA 59.931 47.619 16.99 0.00 37.17 3.02
3538 3575 1.506493 AGCGAACTCAGCAAGTCTTG 58.494 50.000 8.31 8.31 37.17 3.02
3646 3683 0.394565 GTGAGACCTGACAGCAAGGT 59.605 55.000 0.00 0.00 38.87 3.50
3700 3737 9.258826 CAAATTGATCAGAGACGATAGAAGATT 57.741 33.333 0.00 0.00 41.38 2.40
3741 3778 3.320626 CTCACTTGCGATCAACTTGAGA 58.679 45.455 0.00 0.00 38.41 3.27
3756 3793 7.719483 TCATTTCAAATTTCTCAAGCTCACTT 58.281 30.769 0.00 0.00 36.19 3.16
3758 3795 7.935338 TTCATTTCAAATTTCTCAAGCTCAC 57.065 32.000 0.00 0.00 0.00 3.51
3821 3858 2.473530 TGAAGCGAAACTTTGCACTG 57.526 45.000 4.54 0.00 39.29 3.66
3832 3869 0.742281 GCTGGCAGAGATGAAGCGAA 60.742 55.000 20.86 0.00 0.00 4.70
3835 3872 1.334243 GATTGCTGGCAGAGATGAAGC 59.666 52.381 20.86 0.65 0.00 3.86
3841 3878 0.321346 TGTTCGATTGCTGGCAGAGA 59.679 50.000 20.86 5.61 0.00 3.10
3891 3928 0.685785 CTAGACCTGGGCAGAGCAGA 60.686 60.000 0.47 0.00 0.00 4.26
3984 4021 1.483004 TCCCAGTCTTGTCGTGTTTGA 59.517 47.619 0.00 0.00 0.00 2.69
4026 4063 1.183549 ACACGAGTCTCGGCCTATTT 58.816 50.000 25.25 0.20 45.59 1.40
4077 4114 1.926426 CTTCTTCATTCCCCGGGCCT 61.926 60.000 17.73 0.00 0.00 5.19
4080 4117 0.034089 AAGCTTCTTCATTCCCCGGG 60.034 55.000 15.80 15.80 0.00 5.73
4101 4138 2.125350 CGCTTCTCCCTCACAGCC 60.125 66.667 0.00 0.00 0.00 4.85
4145 4182 0.394565 GGAATCCAGTCCCTCATCCG 59.605 60.000 0.00 0.00 0.00 4.18
4194 4231 1.148310 CTTGAAGCCGCGAAGAAGAA 58.852 50.000 8.23 0.00 0.00 2.52
4221 4258 2.182827 CCAGATGAGGAAGTGGACTGA 58.817 52.381 0.00 0.00 31.04 3.41
4224 4261 1.902508 TGACCAGATGAGGAAGTGGAC 59.097 52.381 0.00 0.00 33.95 4.02
4288 4325 3.580022 TGTGTCCAGACTGAATCATCACT 59.420 43.478 3.32 0.00 0.00 3.41
4301 4338 4.522114 TGTTTCTGATTTGTGTGTCCAGA 58.478 39.130 0.00 0.00 32.67 3.86
4302 4339 4.576053 TCTGTTTCTGATTTGTGTGTCCAG 59.424 41.667 0.00 0.00 0.00 3.86
4320 4357 4.387598 GGCAGCTCATCATCTATTCTGTT 58.612 43.478 0.00 0.00 0.00 3.16
4342 4379 5.873179 ATAGAAAACCACACAATACACCG 57.127 39.130 0.00 0.00 0.00 4.94
4344 4381 9.389570 GTAACAATAGAAAACCACACAATACAC 57.610 33.333 0.00 0.00 0.00 2.90
4418 4517 1.133823 ACAGTTGCAAGTGGTGGATCA 60.134 47.619 32.09 0.00 33.62 2.92
4443 4542 3.781079 TCTGTTTCTTGCAAGTTGTGG 57.219 42.857 25.19 13.95 0.00 4.17
4448 4547 2.689983 CCCTGTTCTGTTTCTTGCAAGT 59.310 45.455 25.19 0.00 0.00 3.16
4450 4549 1.408702 GCCCTGTTCTGTTTCTTGCAA 59.591 47.619 0.00 0.00 0.00 4.08
4471 4570 5.360591 ACAGACGCTATAATGCTAGCTTTT 58.639 37.500 19.68 13.60 41.61 2.27
4532 4631 1.601419 GCAGTGTAGTGGGCGTAGGA 61.601 60.000 0.00 0.00 0.00 2.94
4544 4643 3.404899 CCTTTTTCGGTAAGGCAGTGTA 58.595 45.455 0.00 0.00 36.08 2.90
4571 4670 1.551452 TTTGGAATACAAAGCGGGGG 58.449 50.000 0.00 0.00 43.81 5.40
4578 4677 4.942852 CAGTTGGTGCTTTGGAATACAAA 58.057 39.130 0.00 0.00 46.34 2.83
4579 4678 4.582701 CAGTTGGTGCTTTGGAATACAA 57.417 40.909 0.00 0.00 37.28 2.41
4592 4691 1.299316 CAAAGCCGTGCAGTTGGTG 60.299 57.895 0.00 0.00 0.00 4.17
4593 4692 3.119193 CAAAGCCGTGCAGTTGGT 58.881 55.556 0.00 0.00 0.00 3.67
4594 4693 2.355009 GCAAAGCCGTGCAGTTGG 60.355 61.111 4.40 0.00 44.29 3.77
4595 4694 2.726912 CGCAAAGCCGTGCAGTTG 60.727 61.111 9.64 3.14 45.19 3.16
4607 4706 2.168326 TTCATGAGCTCTGTCGCAAA 57.832 45.000 16.19 0.00 0.00 3.68
4671 4770 0.930310 CGCTGTCATGGAATACACCG 59.070 55.000 0.00 0.00 0.00 4.94
4674 4773 0.251634 TGCCGCTGTCATGGAATACA 59.748 50.000 0.00 0.00 0.00 2.29
4762 4861 2.277969 ACATTGATCTTCTGCGAGCTG 58.722 47.619 0.00 0.00 0.00 4.24
4770 4869 5.688807 CATACCTTGGGACATTGATCTTCT 58.311 41.667 0.00 0.00 39.30 2.85
4783 4882 1.598130 GCCGCTAGCATACCTTGGG 60.598 63.158 16.45 6.09 42.97 4.12
4844 4943 2.133281 CCATCAGTGGCAATGAAGGA 57.867 50.000 29.23 4.92 37.67 3.36
4877 4976 0.175760 GGAGCAGCCAATGACGAGTA 59.824 55.000 0.00 0.00 36.34 2.59
4972 5071 3.135712 TGGTTAGTGCCAAGAGACTTTCA 59.864 43.478 0.00 0.00 35.25 2.69
5026 5138 2.012051 GCTAAAGCGGCACCACTACAT 61.012 52.381 1.45 0.00 0.00 2.29
5076 5192 1.600636 CACGGCACCACCATCACTT 60.601 57.895 0.00 0.00 39.03 3.16
5077 5193 2.032528 CACGGCACCACCATCACT 59.967 61.111 0.00 0.00 39.03 3.41
5078 5194 3.055719 CCACGGCACCACCATCAC 61.056 66.667 0.00 0.00 39.03 3.06
5079 5195 3.565214 ACCACGGCACCACCATCA 61.565 61.111 0.00 0.00 39.03 3.07
5080 5196 3.055719 CACCACGGCACCACCATC 61.056 66.667 0.00 0.00 39.03 3.51
5083 5199 3.835790 TTAGCACCACGGCACCACC 62.836 63.158 0.00 0.00 35.83 4.61
5084 5200 2.281208 TTAGCACCACGGCACCAC 60.281 61.111 0.00 0.00 35.83 4.16
5085 5201 2.031919 CTTAGCACCACGGCACCA 59.968 61.111 0.00 0.00 35.83 4.17
5086 5202 3.431725 GCTTAGCACCACGGCACC 61.432 66.667 0.00 0.00 35.83 5.01
5087 5203 2.358737 AGCTTAGCACCACGGCAC 60.359 61.111 7.07 0.00 35.83 5.01
5088 5204 2.184020 ATCAGCTTAGCACCACGGCA 62.184 55.000 7.07 0.00 35.83 5.69
5089 5205 1.450312 ATCAGCTTAGCACCACGGC 60.450 57.895 7.07 0.00 0.00 5.68
5090 5206 0.108186 TCATCAGCTTAGCACCACGG 60.108 55.000 7.07 0.00 0.00 4.94
5091 5207 1.725641 TTCATCAGCTTAGCACCACG 58.274 50.000 7.07 0.00 0.00 4.94
5151 5286 2.292828 ACCTTCCCAACTTGTCATGG 57.707 50.000 0.00 0.00 36.42 3.66
5191 5326 3.581755 CTTGCACTTACAGCATTGCATT 58.418 40.909 11.91 0.00 44.16 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.