Multiple sequence alignment - TraesCS5D01G349600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G349600 chr5D 100.000 4979 0 0 1 4979 434472616 434477594 0.000000e+00 9195.0
1 TraesCS5D01G349600 chr5D 78.288 479 79 16 4461 4920 353078016 353078488 8.160000e-73 285.0
2 TraesCS5D01G349600 chr5B 94.784 3911 126 16 527 4423 527248397 527252243 0.000000e+00 6021.0
3 TraesCS5D01G349600 chr1D 75.316 2929 625 77 1105 3987 491640240 491637364 0.000000e+00 1314.0
4 TraesCS5D01G349600 chr1D 75.851 1822 388 40 2171 3969 491665688 491663896 0.000000e+00 880.0
5 TraesCS5D01G349600 chr1D 80.175 686 133 3 3303 3987 491687044 491686361 1.240000e-140 510.0
6 TraesCS5D01G349600 chr1D 73.514 1144 258 34 1104 2217 491697411 491696283 4.670000e-105 392.0
7 TraesCS5D01G349600 chr1D 72.198 1151 265 42 1103 2217 491689389 491688258 8.100000e-78 302.0
8 TraesCS5D01G349600 chr1D 75.135 555 112 18 1429 1970 491666454 491665913 2.320000e-58 237.0
9 TraesCS5D01G349600 chr1D 80.000 180 30 4 1104 1277 491667031 491666852 1.450000e-25 128.0
10 TraesCS5D01G349600 chr1B 75.138 2900 644 62 1105 3961 683584383 683581518 0.000000e+00 1290.0
11 TraesCS5D01G349600 chr1B 75.279 2690 579 64 1337 3987 683580347 683577705 0.000000e+00 1205.0
12 TraesCS5D01G349600 chr1B 74.255 2921 644 78 1115 3981 1829324 1826458 0.000000e+00 1129.0
13 TraesCS5D01G349600 chr1A 75.000 2824 609 71 1105 3868 589501596 589498810 0.000000e+00 1214.0
14 TraesCS5D01G349600 chr1A 76.714 1838 378 39 2170 3987 589638352 589636545 0.000000e+00 977.0
15 TraesCS5D01G349600 chr1A 75.543 1840 400 41 2165 3987 589447069 589445263 0.000000e+00 859.0
16 TraesCS5D01G349600 chr1A 80.929 624 114 5 3350 3971 589477569 589476949 5.790000e-134 488.0
17 TraesCS5D01G349600 chr1A 74.534 1072 237 29 2165 3221 589478736 589477686 7.650000e-118 435.0
18 TraesCS5D01G349600 chr1A 86.198 384 47 5 4325 4704 136898796 136898415 1.290000e-110 411.0
19 TraesCS5D01G349600 chr1A 73.501 1151 250 40 1104 2217 589639509 589638377 7.820000e-103 385.0
20 TraesCS5D01G349600 chr1A 74.758 931 187 34 1104 2013 589479863 589478960 1.690000e-99 374.0
21 TraesCS5D01G349600 chr1A 74.120 966 203 31 1092 2026 589510617 589509668 6.130000e-94 355.0
22 TraesCS5D01G349600 chr1A 73.138 1128 242 49 1106 2198 589448209 589447108 1.030000e-91 348.0
23 TraesCS5D01G349600 chr1A 81.667 420 74 3 3569 3987 589452502 589452085 3.690000e-91 346.0
24 TraesCS5D01G349600 chr1A 74.752 404 94 7 2165 2564 589517010 589516611 1.840000e-39 174.0
25 TraesCS5D01G349600 chr3B 94.634 410 20 2 1 408 827104092 827104501 7.030000e-178 634.0
26 TraesCS5D01G349600 chr3B 94.634 410 20 2 1 408 827649340 827649749 7.030000e-178 634.0
27 TraesCS5D01G349600 chr3B 94.568 405 20 2 1 403 215114370 215114774 4.230000e-175 625.0
28 TraesCS5D01G349600 chr3B 86.498 237 25 5 4608 4838 404824934 404824699 2.300000e-63 254.0
29 TraesCS5D01G349600 chr7D 94.132 409 23 1 1 408 616450662 616451070 5.470000e-174 621.0
30 TraesCS5D01G349600 chr7D 78.671 572 100 19 4319 4874 210381174 210381739 1.320000e-95 361.0
31 TraesCS5D01G349600 chr5A 93.947 413 22 3 1 412 705898126 705897716 5.470000e-174 621.0
32 TraesCS5D01G349600 chr5A 93.285 417 25 3 1 415 708851932 708851517 3.290000e-171 612.0
33 TraesCS5D01G349600 chr5A 85.530 387 52 3 4319 4701 524258621 524259007 7.760000e-108 401.0
34 TraesCS5D01G349600 chr5A 79.696 527 99 8 4335 4856 456631984 456632507 1.690000e-99 374.0
35 TraesCS5D01G349600 chr7A 93.902 410 23 2 1 408 494281919 494282328 7.080000e-173 617.0
36 TraesCS5D01G349600 chr7A 93.902 410 23 2 1 408 511544666 511545075 7.080000e-173 617.0
37 TraesCS5D01G349600 chr3A 93.902 410 23 2 1 408 534371391 534370982 7.080000e-173 617.0
38 TraesCS5D01G349600 chr3A 84.975 406 56 5 4319 4720 336815788 336816192 1.670000e-109 407.0
39 TraesCS5D01G349600 chr6B 84.132 605 84 9 4362 4958 638441186 638440586 4.320000e-160 575.0
40 TraesCS5D01G349600 chr4D 82.419 620 101 6 4364 4979 66551429 66550814 7.340000e-148 534.0
41 TraesCS5D01G349600 chr6D 79.140 628 105 12 4325 4932 456945887 456945266 1.290000e-110 411.0
42 TraesCS5D01G349600 chr6D 77.187 583 104 22 4319 4878 290329753 290330329 3.740000e-81 313.0
43 TraesCS5D01G349600 chr7B 77.513 587 111 19 4319 4889 704108675 704108094 2.870000e-87 333.0
44 TraesCS5D01G349600 chr2B 82.653 98 17 0 4817 4914 576098295 576098392 2.470000e-13 87.9
45 TraesCS5D01G349600 chr2B 86.842 76 10 0 4817 4892 588464493 588464418 8.880000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G349600 chr5D 434472616 434477594 4978 False 9195.000000 9195 100.000000 1 4979 1 chr5D.!!$F2 4978
1 TraesCS5D01G349600 chr5B 527248397 527252243 3846 False 6021.000000 6021 94.784000 527 4423 1 chr5B.!!$F1 3896
2 TraesCS5D01G349600 chr1D 491637364 491640240 2876 True 1314.000000 1314 75.316000 1105 3987 1 chr1D.!!$R1 2882
3 TraesCS5D01G349600 chr1D 491663896 491667031 3135 True 415.000000 880 76.995333 1104 3969 3 chr1D.!!$R3 2865
4 TraesCS5D01G349600 chr1D 491686361 491689389 3028 True 406.000000 510 76.186500 1103 3987 2 chr1D.!!$R4 2884
5 TraesCS5D01G349600 chr1D 491696283 491697411 1128 True 392.000000 392 73.514000 1104 2217 1 chr1D.!!$R2 1113
6 TraesCS5D01G349600 chr1B 683577705 683584383 6678 True 1247.500000 1290 75.208500 1105 3987 2 chr1B.!!$R2 2882
7 TraesCS5D01G349600 chr1B 1826458 1829324 2866 True 1129.000000 1129 74.255000 1115 3981 1 chr1B.!!$R1 2866
8 TraesCS5D01G349600 chr1A 589498810 589501596 2786 True 1214.000000 1214 75.000000 1105 3868 1 chr1A.!!$R2 2763
9 TraesCS5D01G349600 chr1A 589636545 589639509 2964 True 681.000000 977 75.107500 1104 3987 2 chr1A.!!$R7 2883
10 TraesCS5D01G349600 chr1A 589445263 589452502 7239 True 517.666667 859 76.782667 1106 3987 3 chr1A.!!$R5 2881
11 TraesCS5D01G349600 chr1A 589476949 589479863 2914 True 432.333333 488 76.740333 1104 3971 3 chr1A.!!$R6 2867
12 TraesCS5D01G349600 chr1A 589509668 589510617 949 True 355.000000 355 74.120000 1092 2026 1 chr1A.!!$R3 934
13 TraesCS5D01G349600 chr7D 210381174 210381739 565 False 361.000000 361 78.671000 4319 4874 1 chr7D.!!$F1 555
14 TraesCS5D01G349600 chr5A 456631984 456632507 523 False 374.000000 374 79.696000 4335 4856 1 chr5A.!!$F1 521
15 TraesCS5D01G349600 chr6B 638440586 638441186 600 True 575.000000 575 84.132000 4362 4958 1 chr6B.!!$R1 596
16 TraesCS5D01G349600 chr4D 66550814 66551429 615 True 534.000000 534 82.419000 4364 4979 1 chr4D.!!$R1 615
17 TraesCS5D01G349600 chr6D 456945266 456945887 621 True 411.000000 411 79.140000 4325 4932 1 chr6D.!!$R1 607
18 TraesCS5D01G349600 chr6D 290329753 290330329 576 False 313.000000 313 77.187000 4319 4878 1 chr6D.!!$F1 559
19 TraesCS5D01G349600 chr7B 704108094 704108675 581 True 333.000000 333 77.513000 4319 4889 1 chr7B.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.033228 CACCCTCGAGCATGATCCTC 59.967 60.0 6.99 0.0 0.00 3.71 F
214 215 0.035820 TCCCCAAGATACCGCAACAC 60.036 55.0 0.00 0.0 0.00 3.32 F
303 304 0.037590 TACAACATGTGGTGCCCCTC 59.962 55.0 16.53 0.0 35.82 4.30 F
312 313 0.104882 TGGTGCCCCTCCGGATATAA 60.105 55.0 3.57 0.0 0.00 0.98 F
350 351 0.108756 GCCCGACTCCTACACAACTC 60.109 60.0 0.00 0.0 0.00 3.01 F
351 352 0.170561 CCCGACTCCTACACAACTCG 59.829 60.0 0.00 0.0 0.00 4.18 F
452 453 0.179070 GTCTGGGCCGGAAGAGATTC 60.179 60.0 18.63 0.0 0.00 2.52 F
2379 9953 0.249120 TGGATACTGCACAGTTCGGG 59.751 55.0 8.86 0.0 42.54 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1085 1100 0.530744 GGGTATATCGCTCGCATGGA 59.469 55.000 0.00 0.0 0.00 3.41 R
2035 9315 1.207329 ACAATTCGGTAGCCTCTCCAC 59.793 52.381 0.00 0.0 0.00 4.02 R
2044 9324 8.905702 CAAAATCTTCAAAGAACAATTCGGTAG 58.094 33.333 0.00 0.0 38.77 3.18 R
2371 9945 1.867233 CAACTGACAAGACCCGAACTG 59.133 52.381 0.00 0.0 0.00 3.16 R
2376 9950 0.602905 GACCCAACTGACAAGACCCG 60.603 60.000 0.00 0.0 0.00 5.28 R
3285 10859 2.796557 TCATCGGACTGTCTCTCAAGT 58.203 47.619 7.85 0.0 0.00 3.16 R
3405 10982 4.649218 AGAGAGCTTAGTTCCTCTGGAATC 59.351 45.833 2.17 0.0 44.04 2.52 R
4333 11920 0.179145 GTCGAGGGTACACATGACGG 60.179 60.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.668632 GTTCCATGGCACCCTCGA 59.331 61.111 6.96 0.00 0.00 4.04
18 19 1.450312 GTTCCATGGCACCCTCGAG 60.450 63.158 6.96 5.13 0.00 4.04
19 20 3.329542 TTCCATGGCACCCTCGAGC 62.330 63.158 6.96 0.00 0.00 5.03
20 21 4.100084 CCATGGCACCCTCGAGCA 62.100 66.667 6.99 0.00 0.00 4.26
21 22 2.191375 CATGGCACCCTCGAGCAT 59.809 61.111 6.99 1.44 0.00 3.79
22 23 2.184830 CATGGCACCCTCGAGCATG 61.185 63.158 6.99 10.98 0.00 4.06
24 25 1.703014 ATGGCACCCTCGAGCATGAT 61.703 55.000 16.00 0.00 0.00 2.45
25 26 1.596477 GGCACCCTCGAGCATGATC 60.596 63.158 16.00 0.00 0.00 2.92
28 29 0.033228 CACCCTCGAGCATGATCCTC 59.967 60.000 6.99 0.00 0.00 3.71
33 34 3.481009 CGAGCATGATCCTCGTACC 57.519 57.895 5.18 0.00 45.17 3.34
34 35 0.955178 CGAGCATGATCCTCGTACCT 59.045 55.000 5.18 0.00 45.17 3.08
35 36 1.068885 CGAGCATGATCCTCGTACCTC 60.069 57.143 5.18 0.00 45.17 3.85
36 37 1.271102 GAGCATGATCCTCGTACCTCC 59.729 57.143 0.00 0.00 0.00 4.30
37 38 0.039074 GCATGATCCTCGTACCTCCG 60.039 60.000 0.00 0.00 0.00 4.63
38 39 0.598562 CATGATCCTCGTACCTCCGG 59.401 60.000 0.00 0.00 0.00 5.14
39 40 0.477204 ATGATCCTCGTACCTCCGGA 59.523 55.000 2.93 2.93 0.00 5.14
40 41 0.477204 TGATCCTCGTACCTCCGGAT 59.523 55.000 3.57 0.00 38.90 4.18
41 42 0.882474 GATCCTCGTACCTCCGGATG 59.118 60.000 3.57 4.42 36.44 3.51
42 43 0.477204 ATCCTCGTACCTCCGGATGA 59.523 55.000 14.21 0.00 35.07 2.92
44 45 0.882474 CCTCGTACCTCCGGATGATC 59.118 60.000 14.21 5.01 0.00 2.92
46 47 2.231529 CTCGTACCTCCGGATGATCTT 58.768 52.381 14.21 0.00 0.00 2.40
47 48 2.226912 CTCGTACCTCCGGATGATCTTC 59.773 54.545 14.21 0.00 0.00 2.87
48 49 1.269998 CGTACCTCCGGATGATCTTCC 59.730 57.143 14.21 16.06 0.00 3.46
56 57 1.731720 GGATGATCTTCCGCATAGCC 58.268 55.000 11.59 0.00 0.00 3.93
57 58 1.277557 GGATGATCTTCCGCATAGCCT 59.722 52.381 11.59 0.00 0.00 4.58
58 59 2.289945 GGATGATCTTCCGCATAGCCTT 60.290 50.000 11.59 0.00 0.00 4.35
59 60 2.533266 TGATCTTCCGCATAGCCTTC 57.467 50.000 0.00 0.00 0.00 3.46
63 64 1.218230 CTTCCGCATAGCCTTCTCGC 61.218 60.000 0.00 0.00 0.00 5.03
64 65 1.955495 TTCCGCATAGCCTTCTCGCA 61.955 55.000 0.00 0.00 0.00 5.10
65 66 1.521457 CCGCATAGCCTTCTCGCAA 60.521 57.895 0.00 0.00 0.00 4.85
67 68 1.766143 CGCATAGCCTTCTCGCAACC 61.766 60.000 0.00 0.00 0.00 3.77
69 70 2.014068 GCATAGCCTTCTCGCAACCTT 61.014 52.381 0.00 0.00 0.00 3.50
70 71 1.667724 CATAGCCTTCTCGCAACCTTG 59.332 52.381 0.00 0.00 0.00 3.61
85 86 4.990257 CAACCTTGCTCTGATACCATTTG 58.010 43.478 0.00 0.00 0.00 2.32
86 87 4.307032 ACCTTGCTCTGATACCATTTGT 57.693 40.909 0.00 0.00 0.00 2.83
87 88 4.666512 ACCTTGCTCTGATACCATTTGTT 58.333 39.130 0.00 0.00 0.00 2.83
88 89 5.815581 ACCTTGCTCTGATACCATTTGTTA 58.184 37.500 0.00 0.00 0.00 2.41
89 90 5.882557 ACCTTGCTCTGATACCATTTGTTAG 59.117 40.000 0.00 0.00 0.00 2.34
90 91 6.115446 CCTTGCTCTGATACCATTTGTTAGA 58.885 40.000 0.00 0.00 0.00 2.10
93 94 9.330063 CTTGCTCTGATACCATTTGTTAGAATA 57.670 33.333 0.00 0.00 0.00 1.75
95 96 9.679661 TGCTCTGATACCATTTGTTAGAATAAA 57.320 29.630 0.00 0.00 0.00 1.40
99 100 9.221775 CTGATACCATTTGTTAGAATAAAACGC 57.778 33.333 0.00 0.00 0.00 4.84
100 101 8.952278 TGATACCATTTGTTAGAATAAAACGCT 58.048 29.630 0.00 0.00 0.00 5.07
104 105 9.567848 ACCATTTGTTAGAATAAAACGCTAATG 57.432 29.630 0.00 0.00 0.00 1.90
105 106 8.531530 CCATTTGTTAGAATAAAACGCTAATGC 58.468 33.333 0.00 0.00 30.09 3.56
106 107 9.071221 CATTTGTTAGAATAAAACGCTAATGCA 57.929 29.630 0.00 0.00 39.64 3.96
107 108 9.632807 ATTTGTTAGAATAAAACGCTAATGCAA 57.367 25.926 0.00 0.00 39.64 4.08
108 109 8.667987 TTGTTAGAATAAAACGCTAATGCAAG 57.332 30.769 0.00 0.00 39.64 4.01
110 111 8.673711 TGTTAGAATAAAACGCTAATGCAAGAT 58.326 29.630 0.00 0.00 39.64 2.40
111 112 9.159470 GTTAGAATAAAACGCTAATGCAAGATC 57.841 33.333 0.00 0.00 39.64 2.75
112 113 7.320443 AGAATAAAACGCTAATGCAAGATCA 57.680 32.000 0.00 0.00 39.64 2.92
114 115 9.056005 AGAATAAAACGCTAATGCAAGATCATA 57.944 29.630 0.00 0.00 39.64 2.15
116 117 6.925610 AAAACGCTAATGCAAGATCATAGA 57.074 33.333 0.00 0.00 39.64 1.98
117 118 5.914085 AACGCTAATGCAAGATCATAGAC 57.086 39.130 0.00 0.00 39.64 2.59
118 119 3.983988 ACGCTAATGCAAGATCATAGACG 59.016 43.478 0.00 0.00 39.64 4.18
119 120 4.229876 CGCTAATGCAAGATCATAGACGA 58.770 43.478 0.00 0.00 39.64 4.20
121 122 4.984785 GCTAATGCAAGATCATAGACGACA 59.015 41.667 0.00 0.00 39.41 4.35
122 123 5.107683 GCTAATGCAAGATCATAGACGACAC 60.108 44.000 0.00 0.00 39.41 3.67
123 124 3.866883 TGCAAGATCATAGACGACACA 57.133 42.857 0.00 0.00 0.00 3.72
124 125 4.391405 TGCAAGATCATAGACGACACAT 57.609 40.909 0.00 0.00 0.00 3.21
148 149 4.317139 CGAGGCACGATATTTGTTAACGAG 60.317 45.833 0.00 0.00 45.77 4.18
150 151 3.619929 GGCACGATATTTGTTAACGAGGT 59.380 43.478 0.26 0.00 31.22 3.85
151 152 4.093850 GGCACGATATTTGTTAACGAGGTT 59.906 41.667 0.26 0.00 31.22 3.50
152 153 5.253335 GCACGATATTTGTTAACGAGGTTC 58.747 41.667 0.26 0.00 31.22 3.62
153 154 5.163933 GCACGATATTTGTTAACGAGGTTCA 60.164 40.000 0.26 0.00 31.22 3.18
154 155 6.456449 GCACGATATTTGTTAACGAGGTTCAT 60.456 38.462 0.26 0.00 31.22 2.57
157 158 6.197655 CGATATTTGTTAACGAGGTTCATCGA 59.802 38.462 13.45 0.00 45.56 3.59
159 160 9.188588 GATATTTGTTAACGAGGTTCATCGATA 57.811 33.333 13.45 3.54 45.56 2.92
160 161 9.706691 ATATTTGTTAACGAGGTTCATCGATAT 57.293 29.630 13.45 2.50 45.56 1.63
161 162 6.822073 TTGTTAACGAGGTTCATCGATATG 57.178 37.500 13.45 0.00 45.56 1.78
162 163 5.286438 TGTTAACGAGGTTCATCGATATGG 58.714 41.667 13.45 0.00 45.56 2.74
165 166 3.154710 ACGAGGTTCATCGATATGGCTA 58.845 45.455 13.45 0.00 45.56 3.93
166 167 3.057456 ACGAGGTTCATCGATATGGCTAC 60.057 47.826 13.45 0.00 45.56 3.58
167 168 3.057526 CGAGGTTCATCGATATGGCTACA 60.058 47.826 0.00 0.00 45.56 2.74
168 169 4.380973 CGAGGTTCATCGATATGGCTACAT 60.381 45.833 0.00 0.00 45.56 2.29
169 170 5.078411 AGGTTCATCGATATGGCTACATC 57.922 43.478 0.00 0.00 38.53 3.06
170 171 4.081420 AGGTTCATCGATATGGCTACATCC 60.081 45.833 0.00 0.00 38.53 3.51
171 172 4.184629 GTTCATCGATATGGCTACATCCC 58.815 47.826 0.00 0.00 38.53 3.85
172 173 2.766263 TCATCGATATGGCTACATCCCC 59.234 50.000 0.00 0.00 38.53 4.81
173 174 1.182667 TCGATATGGCTACATCCCCG 58.817 55.000 0.00 0.00 38.53 5.73
174 175 0.175760 CGATATGGCTACATCCCCGG 59.824 60.000 0.00 0.00 38.53 5.73
175 176 1.568504 GATATGGCTACATCCCCGGA 58.431 55.000 0.73 0.00 38.53 5.14
176 177 1.482593 GATATGGCTACATCCCCGGAG 59.517 57.143 0.73 0.00 38.53 4.63
177 178 1.192146 TATGGCTACATCCCCGGAGC 61.192 60.000 0.73 1.53 38.53 4.70
178 179 3.161450 GGCTACATCCCCGGAGCA 61.161 66.667 0.73 0.00 36.63 4.26
179 180 2.520536 GGCTACATCCCCGGAGCAT 61.521 63.158 0.73 0.00 36.63 3.79
180 181 1.302033 GCTACATCCCCGGAGCATG 60.302 63.158 0.73 4.18 34.96 4.06
181 182 1.758440 GCTACATCCCCGGAGCATGA 61.758 60.000 0.73 0.00 34.96 3.07
183 184 0.398522 TACATCCCCGGAGCATGACT 60.399 55.000 0.73 0.00 0.00 3.41
184 185 0.398522 ACATCCCCGGAGCATGACTA 60.399 55.000 0.73 0.00 0.00 2.59
190 191 4.835927 GGAGCATGACTACGGGTG 57.164 61.111 0.00 0.00 0.00 4.61
191 192 1.521681 GGAGCATGACTACGGGTGC 60.522 63.158 0.00 0.00 37.84 5.01
194 195 1.521681 GCATGACTACGGGTGCTCC 60.522 63.158 0.00 0.00 34.85 4.70
195 196 1.961180 GCATGACTACGGGTGCTCCT 61.961 60.000 4.53 0.00 34.85 3.69
197 198 1.043673 ATGACTACGGGTGCTCCTCC 61.044 60.000 4.53 0.00 0.00 4.30
198 199 2.363925 ACTACGGGTGCTCCTCCC 60.364 66.667 4.53 1.00 41.41 4.30
199 200 3.155167 CTACGGGTGCTCCTCCCC 61.155 72.222 4.53 0.00 41.78 4.81
201 202 3.549433 TACGGGTGCTCCTCCCCAA 62.549 63.158 4.53 0.00 41.30 4.12
203 204 2.610859 GGGTGCTCCTCCCCAAGA 60.611 66.667 4.53 0.00 40.88 3.02
205 206 0.694444 GGGTGCTCCTCCCCAAGATA 60.694 60.000 4.53 0.00 40.88 1.98
206 207 0.470341 GGTGCTCCTCCCCAAGATAC 59.530 60.000 0.00 0.00 0.00 2.24
207 208 0.470341 GTGCTCCTCCCCAAGATACC 59.530 60.000 0.00 0.00 0.00 2.73
208 209 1.048724 TGCTCCTCCCCAAGATACCG 61.049 60.000 0.00 0.00 0.00 4.02
209 210 1.749033 CTCCTCCCCAAGATACCGC 59.251 63.158 0.00 0.00 0.00 5.68
210 211 1.002403 TCCTCCCCAAGATACCGCA 59.998 57.895 0.00 0.00 0.00 5.69
212 213 0.463833 CCTCCCCAAGATACCGCAAC 60.464 60.000 0.00 0.00 0.00 4.17
213 214 0.251916 CTCCCCAAGATACCGCAACA 59.748 55.000 0.00 0.00 0.00 3.33
214 215 0.035820 TCCCCAAGATACCGCAACAC 60.036 55.000 0.00 0.00 0.00 3.32
216 217 1.366111 CCCAAGATACCGCAACACCG 61.366 60.000 0.00 0.00 0.00 4.94
258 259 4.509737 GTCGGCTCCCCTGCGTAC 62.510 72.222 0.00 0.00 0.00 3.67
262 263 3.391382 GCTCCCCTGCGTACCTGT 61.391 66.667 0.00 0.00 0.00 4.00
263 264 2.955881 GCTCCCCTGCGTACCTGTT 61.956 63.158 0.00 0.00 0.00 3.16
265 266 2.746277 CCCCTGCGTACCTGTTGC 60.746 66.667 0.00 0.00 0.00 4.17
266 267 2.347490 CCCTGCGTACCTGTTGCT 59.653 61.111 0.00 0.00 0.00 3.91
267 268 1.594833 CCCTGCGTACCTGTTGCTA 59.405 57.895 0.00 0.00 0.00 3.49
268 269 0.178068 CCCTGCGTACCTGTTGCTAT 59.822 55.000 0.00 0.00 0.00 2.97
269 270 1.571919 CCTGCGTACCTGTTGCTATC 58.428 55.000 0.00 0.00 0.00 2.08
270 271 1.134818 CCTGCGTACCTGTTGCTATCA 60.135 52.381 0.00 0.00 0.00 2.15
271 272 2.616960 CTGCGTACCTGTTGCTATCAA 58.383 47.619 0.00 0.00 0.00 2.57
273 274 2.028476 TGCGTACCTGTTGCTATCAAGT 60.028 45.455 0.00 0.00 31.93 3.16
274 275 2.603560 GCGTACCTGTTGCTATCAAGTC 59.396 50.000 0.00 0.00 31.93 3.01
276 277 3.672511 CGTACCTGTTGCTATCAAGTCGT 60.673 47.826 0.00 0.00 31.93 4.34
277 278 2.960819 ACCTGTTGCTATCAAGTCGTC 58.039 47.619 0.00 0.00 31.93 4.20
278 279 2.299013 ACCTGTTGCTATCAAGTCGTCA 59.701 45.455 0.00 0.00 31.93 4.35
280 281 3.308053 CCTGTTGCTATCAAGTCGTCATG 59.692 47.826 0.00 0.00 31.93 3.07
282 283 3.679502 TGTTGCTATCAAGTCGTCATGTG 59.320 43.478 0.00 0.00 31.93 3.21
283 284 3.592898 TGCTATCAAGTCGTCATGTGT 57.407 42.857 0.00 0.00 0.00 3.72
285 286 5.066968 TGCTATCAAGTCGTCATGTGTTA 57.933 39.130 0.00 0.00 0.00 2.41
286 287 4.862574 TGCTATCAAGTCGTCATGTGTTAC 59.137 41.667 0.00 0.00 0.00 2.50
288 289 5.347635 GCTATCAAGTCGTCATGTGTTACAA 59.652 40.000 0.00 0.00 0.00 2.41
289 290 5.591643 ATCAAGTCGTCATGTGTTACAAC 57.408 39.130 0.00 0.00 0.00 3.32
290 291 4.434520 TCAAGTCGTCATGTGTTACAACA 58.565 39.130 0.00 0.00 36.38 3.33
291 292 5.053811 TCAAGTCGTCATGTGTTACAACAT 58.946 37.500 0.00 0.00 41.59 2.71
298 299 3.641437 ATGTGTTACAACATGTGGTGC 57.359 42.857 16.53 9.19 41.59 5.01
299 300 1.678627 TGTGTTACAACATGTGGTGCC 59.321 47.619 16.53 6.64 41.59 5.01
300 301 1.000717 GTGTTACAACATGTGGTGCCC 60.001 52.381 16.53 4.18 41.59 5.36
301 302 0.601057 GTTACAACATGTGGTGCCCC 59.399 55.000 16.53 0.00 35.82 5.80
302 303 0.480690 TTACAACATGTGGTGCCCCT 59.519 50.000 16.53 0.00 35.82 4.79
303 304 0.037590 TACAACATGTGGTGCCCCTC 59.962 55.000 16.53 0.00 35.82 4.30
304 305 1.978617 CAACATGTGGTGCCCCTCC 60.979 63.158 0.00 0.00 0.00 4.30
305 306 3.567579 AACATGTGGTGCCCCTCCG 62.568 63.158 0.00 0.00 0.00 4.63
306 307 4.802051 CATGTGGTGCCCCTCCGG 62.802 72.222 0.00 0.00 0.00 5.14
310 311 2.147387 GTGGTGCCCCTCCGGATAT 61.147 63.158 3.57 0.00 0.00 1.63
311 312 0.834687 GTGGTGCCCCTCCGGATATA 60.835 60.000 3.57 0.00 0.00 0.86
312 313 0.104882 TGGTGCCCCTCCGGATATAA 60.105 55.000 3.57 0.00 0.00 0.98
313 314 0.613777 GGTGCCCCTCCGGATATAAG 59.386 60.000 3.57 0.00 0.00 1.73
314 315 1.640917 GTGCCCCTCCGGATATAAGA 58.359 55.000 3.57 0.00 0.00 2.10
316 317 1.196012 GCCCCTCCGGATATAAGAGG 58.804 60.000 3.57 0.00 45.72 3.69
317 318 1.196012 CCCCTCCGGATATAAGAGGC 58.804 60.000 3.57 0.00 44.95 4.70
318 319 1.196012 CCCTCCGGATATAAGAGGCC 58.804 60.000 3.57 0.00 44.95 5.19
319 320 1.273324 CCCTCCGGATATAAGAGGCCT 60.273 57.143 3.86 3.86 44.95 5.19
320 321 2.024273 CCCTCCGGATATAAGAGGCCTA 60.024 54.545 4.42 0.00 44.95 3.93
321 322 3.565890 CCCTCCGGATATAAGAGGCCTAA 60.566 52.174 4.42 0.00 44.95 2.69
322 323 3.702045 CCTCCGGATATAAGAGGCCTAAG 59.298 52.174 4.42 0.00 40.75 2.18
323 324 4.570079 CCTCCGGATATAAGAGGCCTAAGA 60.570 50.000 4.42 0.00 40.75 2.10
324 325 5.205056 CTCCGGATATAAGAGGCCTAAGAT 58.795 45.833 4.42 0.93 0.00 2.40
325 326 6.337185 TCCGGATATAAGAGGCCTAAGATA 57.663 41.667 4.42 3.60 0.00 1.98
326 327 6.923670 TCCGGATATAAGAGGCCTAAGATAT 58.076 40.000 4.42 8.89 0.00 1.63
327 328 8.053776 TCCGGATATAAGAGGCCTAAGATATA 57.946 38.462 4.42 6.99 0.00 0.86
328 329 8.508601 TCCGGATATAAGAGGCCTAAGATATAA 58.491 37.037 4.42 0.00 0.00 0.98
329 330 8.798402 CCGGATATAAGAGGCCTAAGATATAAG 58.202 40.741 4.42 6.40 0.00 1.73
330 331 9.357161 CGGATATAAGAGGCCTAAGATATAAGT 57.643 37.037 4.42 0.00 0.00 2.24
333 334 5.491323 AAGAGGCCTAAGATATAAGTGCC 57.509 43.478 4.42 0.00 37.68 5.01
334 335 3.841255 AGAGGCCTAAGATATAAGTGCCC 59.159 47.826 4.42 0.00 38.15 5.36
335 336 2.567615 AGGCCTAAGATATAAGTGCCCG 59.432 50.000 1.29 0.00 38.15 6.13
337 338 3.586892 GCCTAAGATATAAGTGCCCGAC 58.413 50.000 0.00 0.00 0.00 4.79
338 339 3.258622 GCCTAAGATATAAGTGCCCGACT 59.741 47.826 0.00 0.00 35.94 4.18
340 341 4.082136 CCTAAGATATAAGTGCCCGACTCC 60.082 50.000 0.00 0.00 31.73 3.85
341 342 3.246416 AGATATAAGTGCCCGACTCCT 57.754 47.619 0.00 0.00 31.73 3.69
342 343 4.383931 AGATATAAGTGCCCGACTCCTA 57.616 45.455 0.00 0.00 31.73 2.94
343 344 4.080687 AGATATAAGTGCCCGACTCCTAC 58.919 47.826 0.00 0.00 31.73 3.18
344 345 2.154567 ATAAGTGCCCGACTCCTACA 57.845 50.000 0.00 0.00 31.73 2.74
345 346 1.180029 TAAGTGCCCGACTCCTACAC 58.820 55.000 0.00 0.00 31.73 2.90
347 348 0.830444 AGTGCCCGACTCCTACACAA 60.830 55.000 0.00 0.00 33.69 3.33
348 349 0.669625 GTGCCCGACTCCTACACAAC 60.670 60.000 0.00 0.00 0.00 3.32
349 350 0.830444 TGCCCGACTCCTACACAACT 60.830 55.000 0.00 0.00 0.00 3.16
350 351 0.108756 GCCCGACTCCTACACAACTC 60.109 60.000 0.00 0.00 0.00 3.01
351 352 0.170561 CCCGACTCCTACACAACTCG 59.829 60.000 0.00 0.00 0.00 4.18
353 354 2.079158 CCGACTCCTACACAACTCGTA 58.921 52.381 0.00 0.00 0.00 3.43
354 355 2.159599 CCGACTCCTACACAACTCGTAC 60.160 54.545 0.00 0.00 0.00 3.67
355 356 2.159599 CGACTCCTACACAACTCGTACC 60.160 54.545 0.00 0.00 0.00 3.34
357 358 4.256920 GACTCCTACACAACTCGTACCTA 58.743 47.826 0.00 0.00 0.00 3.08
358 359 4.655963 ACTCCTACACAACTCGTACCTAA 58.344 43.478 0.00 0.00 0.00 2.69
360 361 3.758554 TCCTACACAACTCGTACCTAACC 59.241 47.826 0.00 0.00 0.00 2.85
361 362 3.507233 CCTACACAACTCGTACCTAACCA 59.493 47.826 0.00 0.00 0.00 3.67
362 363 3.375782 ACACAACTCGTACCTAACCAC 57.624 47.619 0.00 0.00 0.00 4.16
363 364 2.694628 ACACAACTCGTACCTAACCACA 59.305 45.455 0.00 0.00 0.00 4.17
365 366 2.036346 ACAACTCGTACCTAACCACACC 59.964 50.000 0.00 0.00 0.00 4.16
366 367 1.999648 ACTCGTACCTAACCACACCA 58.000 50.000 0.00 0.00 0.00 4.17
367 368 2.318908 ACTCGTACCTAACCACACCAA 58.681 47.619 0.00 0.00 0.00 3.67
369 370 3.325716 ACTCGTACCTAACCACACCAATT 59.674 43.478 0.00 0.00 0.00 2.32
370 371 4.527816 ACTCGTACCTAACCACACCAATTA 59.472 41.667 0.00 0.00 0.00 1.40
371 372 4.819769 TCGTACCTAACCACACCAATTAC 58.180 43.478 0.00 0.00 0.00 1.89
373 374 4.628333 CGTACCTAACCACACCAATTACAG 59.372 45.833 0.00 0.00 0.00 2.74
374 375 3.418047 ACCTAACCACACCAATTACAGC 58.582 45.455 0.00 0.00 0.00 4.40
376 377 3.689649 CCTAACCACACCAATTACAGCTC 59.310 47.826 0.00 0.00 0.00 4.09
377 378 2.200373 ACCACACCAATTACAGCTCC 57.800 50.000 0.00 0.00 0.00 4.70
378 379 1.423541 ACCACACCAATTACAGCTCCA 59.576 47.619 0.00 0.00 0.00 3.86
380 381 2.489329 CCACACCAATTACAGCTCCAAG 59.511 50.000 0.00 0.00 0.00 3.61
381 382 3.149196 CACACCAATTACAGCTCCAAGT 58.851 45.455 0.00 0.00 0.00 3.16
382 383 3.189287 CACACCAATTACAGCTCCAAGTC 59.811 47.826 0.00 0.00 0.00 3.01
383 384 2.749621 CACCAATTACAGCTCCAAGTCC 59.250 50.000 0.00 0.00 0.00 3.85
384 385 2.375174 ACCAATTACAGCTCCAAGTCCA 59.625 45.455 0.00 0.00 0.00 4.02
385 386 2.749621 CCAATTACAGCTCCAAGTCCAC 59.250 50.000 0.00 0.00 0.00 4.02
388 389 1.913778 TACAGCTCCAAGTCCACGTA 58.086 50.000 0.00 0.00 0.00 3.57
389 390 1.045407 ACAGCTCCAAGTCCACGTAA 58.955 50.000 0.00 0.00 0.00 3.18
390 391 1.270147 ACAGCTCCAAGTCCACGTAAC 60.270 52.381 0.00 0.00 0.00 2.50
391 392 0.320697 AGCTCCAAGTCCACGTAACC 59.679 55.000 0.00 0.00 0.00 2.85
392 393 0.672711 GCTCCAAGTCCACGTAACCC 60.673 60.000 0.00 0.00 0.00 4.11
394 395 0.472352 TCCAAGTCCACGTAACCCCT 60.472 55.000 0.00 0.00 0.00 4.79
395 396 0.399075 CCAAGTCCACGTAACCCCTT 59.601 55.000 0.00 0.00 0.00 3.95
396 397 1.624813 CCAAGTCCACGTAACCCCTTA 59.375 52.381 0.00 0.00 0.00 2.69
397 398 2.613725 CCAAGTCCACGTAACCCCTTAC 60.614 54.545 0.00 0.00 0.00 2.34
398 399 2.014010 AGTCCACGTAACCCCTTACA 57.986 50.000 0.00 0.00 33.01 2.41
399 400 2.543635 AGTCCACGTAACCCCTTACAT 58.456 47.619 0.00 0.00 33.01 2.29
400 401 3.711863 AGTCCACGTAACCCCTTACATA 58.288 45.455 0.00 0.00 33.01 2.29
401 402 3.448660 AGTCCACGTAACCCCTTACATAC 59.551 47.826 0.00 0.00 33.01 2.39
402 403 3.195396 GTCCACGTAACCCCTTACATACA 59.805 47.826 0.00 0.00 33.01 2.29
407 408 6.183360 CCACGTAACCCCTTACATACAGAATA 60.183 42.308 0.00 0.00 33.01 1.75
409 410 7.929785 CACGTAACCCCTTACATACAGAATAAT 59.070 37.037 0.00 0.00 33.01 1.28
410 411 9.146586 ACGTAACCCCTTACATACAGAATAATA 57.853 33.333 0.00 0.00 33.01 0.98
415 416 9.317827 ACCCCTTACATACAGAATAATATACGT 57.682 33.333 0.00 0.00 0.00 3.57
416 417 9.582431 CCCCTTACATACAGAATAATATACGTG 57.418 37.037 0.00 0.00 0.00 4.49
422 423 8.978539 ACATACAGAATAATATACGTGTTGCTG 58.021 33.333 0.00 0.00 0.00 4.41
423 424 8.978539 CATACAGAATAATATACGTGTTGCTGT 58.021 33.333 0.00 0.00 36.85 4.40
425 426 8.348983 ACAGAATAATATACGTGTTGCTGTAC 57.651 34.615 0.00 0.00 31.81 2.90
426 427 7.166970 ACAGAATAATATACGTGTTGCTGTACG 59.833 37.037 0.00 0.00 45.19 3.67
427 428 7.377662 CAGAATAATATACGTGTTGCTGTACGA 59.622 37.037 12.68 0.07 42.54 3.43
428 429 8.080417 AGAATAATATACGTGTTGCTGTACGAT 58.920 33.333 12.68 6.05 42.54 3.73
429 430 8.583810 AATAATATACGTGTTGCTGTACGATT 57.416 30.769 12.68 6.20 42.54 3.34
430 431 9.681692 AATAATATACGTGTTGCTGTACGATTA 57.318 29.630 12.68 7.73 42.54 1.75
431 432 7.990541 AATATACGTGTTGCTGTACGATTAA 57.009 32.000 12.68 0.00 42.54 1.40
432 433 5.944049 ATACGTGTTGCTGTACGATTAAG 57.056 39.130 12.68 0.00 42.54 1.85
433 434 2.991190 ACGTGTTGCTGTACGATTAAGG 59.009 45.455 12.68 0.00 42.54 2.69
434 435 2.991190 CGTGTTGCTGTACGATTAAGGT 59.009 45.455 0.00 0.00 42.54 3.50
436 437 4.243270 GTGTTGCTGTACGATTAAGGTCT 58.757 43.478 0.00 0.00 0.00 3.85
437 438 4.091509 GTGTTGCTGTACGATTAAGGTCTG 59.908 45.833 0.00 0.00 0.00 3.51
439 440 2.167693 TGCTGTACGATTAAGGTCTGGG 59.832 50.000 0.00 0.00 0.00 4.45
440 441 2.822764 CTGTACGATTAAGGTCTGGGC 58.177 52.381 0.00 0.00 0.00 5.36
441 442 1.483415 TGTACGATTAAGGTCTGGGCC 59.517 52.381 0.00 0.00 0.00 5.80
442 443 0.748450 TACGATTAAGGTCTGGGCCG 59.252 55.000 0.00 0.00 0.00 6.13
443 444 1.227556 CGATTAAGGTCTGGGCCGG 60.228 63.158 5.83 5.83 0.00 6.13
444 445 1.682451 CGATTAAGGTCTGGGCCGGA 61.682 60.000 12.08 12.08 0.00 5.14
445 446 0.544697 GATTAAGGTCTGGGCCGGAA 59.455 55.000 18.63 0.37 0.00 4.30
446 447 0.546598 ATTAAGGTCTGGGCCGGAAG 59.453 55.000 18.63 0.00 0.00 3.46
447 448 0.545787 TTAAGGTCTGGGCCGGAAGA 60.546 55.000 18.63 1.45 0.00 2.87
448 449 0.976073 TAAGGTCTGGGCCGGAAGAG 60.976 60.000 18.63 0.00 0.00 2.85
449 450 2.683933 GGTCTGGGCCGGAAGAGA 60.684 66.667 18.63 0.55 0.00 3.10
451 452 1.627297 GGTCTGGGCCGGAAGAGATT 61.627 60.000 18.63 0.00 0.00 2.40
452 453 0.179070 GTCTGGGCCGGAAGAGATTC 60.179 60.000 18.63 0.00 0.00 2.52
455 456 1.524849 GGGCCGGAAGAGATTCAGC 60.525 63.158 5.05 0.00 0.00 4.26
456 457 1.524482 GGCCGGAAGAGATTCAGCT 59.476 57.895 5.05 0.00 0.00 4.24
457 458 0.531753 GGCCGGAAGAGATTCAGCTC 60.532 60.000 5.05 0.00 35.11 4.09
458 459 0.873743 GCCGGAAGAGATTCAGCTCG 60.874 60.000 5.05 0.00 39.87 5.03
460 461 1.554392 CGGAAGAGATTCAGCTCGTG 58.446 55.000 0.00 0.00 39.87 4.35
461 462 1.135257 CGGAAGAGATTCAGCTCGTGT 60.135 52.381 0.00 0.00 39.87 4.49
462 463 2.097629 CGGAAGAGATTCAGCTCGTGTA 59.902 50.000 0.00 0.00 39.87 2.90
464 465 4.295051 GGAAGAGATTCAGCTCGTGTATC 58.705 47.826 0.00 0.00 39.87 2.24
465 466 4.037446 GGAAGAGATTCAGCTCGTGTATCT 59.963 45.833 0.00 0.00 43.87 1.98
466 467 5.239744 GGAAGAGATTCAGCTCGTGTATCTA 59.760 44.000 0.00 0.00 41.90 1.98
467 468 6.072175 GGAAGAGATTCAGCTCGTGTATCTAT 60.072 42.308 0.00 0.00 41.90 1.98
468 469 6.494893 AGAGATTCAGCTCGTGTATCTATC 57.505 41.667 0.00 0.00 41.90 2.08
471 472 6.619744 AGATTCAGCTCGTGTATCTATCATG 58.380 40.000 0.00 0.00 40.50 3.07
472 473 6.432472 AGATTCAGCTCGTGTATCTATCATGA 59.568 38.462 0.00 0.00 40.50 3.07
474 475 5.947443 TCAGCTCGTGTATCTATCATGATG 58.053 41.667 18.72 8.44 31.69 3.07
475 476 5.707298 TCAGCTCGTGTATCTATCATGATGA 59.293 40.000 18.72 13.30 31.69 2.92
477 478 7.034397 CAGCTCGTGTATCTATCATGATGATT 58.966 38.462 18.72 5.05 38.26 2.57
479 480 8.743714 AGCTCGTGTATCTATCATGATGATTTA 58.256 33.333 18.72 2.66 38.26 1.40
480 481 9.526713 GCTCGTGTATCTATCATGATGATTTAT 57.473 33.333 18.72 9.79 38.26 1.40
482 483 9.305925 TCGTGTATCTATCATGATGATTTATGC 57.694 33.333 18.72 11.00 38.26 3.14
484 485 8.834465 GTGTATCTATCATGATGATTTATGCCC 58.166 37.037 18.72 0.00 38.26 5.36
486 487 6.391479 TCTATCATGATGATTTATGCCCCA 57.609 37.500 18.72 0.00 38.26 4.96
488 489 5.932619 ATCATGATGATTTATGCCCCATG 57.067 39.130 7.59 0.00 32.13 3.66
490 491 5.585894 TCATGATGATTTATGCCCCATGAT 58.414 37.500 0.00 0.00 35.45 2.45
491 492 5.420739 TCATGATGATTTATGCCCCATGATG 59.579 40.000 0.00 0.00 35.45 3.07
493 494 5.395611 TGATGATTTATGCCCCATGATGAA 58.604 37.500 0.00 0.00 0.00 2.57
494 495 5.839606 TGATGATTTATGCCCCATGATGAAA 59.160 36.000 0.00 0.00 0.00 2.69
495 496 6.326843 TGATGATTTATGCCCCATGATGAAAA 59.673 34.615 0.00 0.00 0.00 2.29
496 497 6.750660 TGATTTATGCCCCATGATGAAAAT 57.249 33.333 0.00 0.00 0.00 1.82
497 498 6.761312 TGATTTATGCCCCATGATGAAAATC 58.239 36.000 0.00 3.23 34.33 2.17
498 499 6.555738 TGATTTATGCCCCATGATGAAAATCT 59.444 34.615 0.00 0.00 34.66 2.40
499 500 5.794726 TTATGCCCCATGATGAAAATCTG 57.205 39.130 0.00 0.00 0.00 2.90
500 501 3.104519 TGCCCCATGATGAAAATCTGT 57.895 42.857 0.00 0.00 0.00 3.41
502 503 3.448301 TGCCCCATGATGAAAATCTGTTC 59.552 43.478 0.00 0.00 0.00 3.18
503 504 3.703052 GCCCCATGATGAAAATCTGTTCT 59.297 43.478 0.00 0.00 0.00 3.01
506 507 6.335777 CCCCATGATGAAAATCTGTTCTTTC 58.664 40.000 0.00 0.00 33.10 2.62
507 508 6.032094 CCCATGATGAAAATCTGTTCTTTCG 58.968 40.000 0.00 0.00 34.84 3.46
508 509 5.514204 CCATGATGAAAATCTGTTCTTTCGC 59.486 40.000 0.00 0.00 34.84 4.70
510 511 6.070897 TGATGAAAATCTGTTCTTTCGCAA 57.929 33.333 0.00 0.00 34.84 4.85
512 513 6.977502 TGATGAAAATCTGTTCTTTCGCAAAA 59.022 30.769 0.00 0.00 34.84 2.44
513 514 7.490725 TGATGAAAATCTGTTCTTTCGCAAAAA 59.509 29.630 0.00 0.00 34.84 1.94
515 516 7.032580 TGAAAATCTGTTCTTTCGCAAAAAGA 58.967 30.769 7.08 7.08 34.84 2.52
518 519 6.998258 ATCTGTTCTTTCGCAAAAAGAATG 57.002 33.333 20.64 17.08 44.87 2.67
521 522 4.803088 TGTTCTTTCGCAAAAAGAATGGTG 59.197 37.500 20.64 0.00 44.87 4.17
522 523 3.976169 TCTTTCGCAAAAAGAATGGTGG 58.024 40.909 8.42 0.00 33.72 4.61
524 525 1.035923 TCGCAAAAAGAATGGTGGCA 58.964 45.000 0.00 0.00 0.00 4.92
525 526 1.000385 TCGCAAAAAGAATGGTGGCAG 60.000 47.619 0.00 0.00 0.00 4.85
526 527 1.000385 CGCAAAAAGAATGGTGGCAGA 60.000 47.619 0.00 0.00 0.00 4.26
528 529 2.611224 GCAAAAAGAATGGTGGCAGAGG 60.611 50.000 0.00 0.00 0.00 3.69
529 530 2.629617 CAAAAAGAATGGTGGCAGAGGT 59.370 45.455 0.00 0.00 0.00 3.85
530 531 1.915141 AAAGAATGGTGGCAGAGGTG 58.085 50.000 0.00 0.00 0.00 4.00
540 541 2.662596 CAGAGGTGCCGCTTGGTA 59.337 61.111 0.00 0.00 34.16 3.25
545 546 0.909623 AGGTGCCGCTTGGTAGTATT 59.090 50.000 0.00 0.00 34.16 1.89
762 773 1.232119 GGTAACCGTTGGTCCAACAG 58.768 55.000 29.70 22.82 43.70 3.16
801 812 1.507141 CCGTTCTTCCACACCAGCAC 61.507 60.000 0.00 0.00 0.00 4.40
939 950 0.909610 TCCTCCCCTGCTAGTGTTGG 60.910 60.000 0.00 0.00 0.00 3.77
943 954 2.771943 CTCCCCTGCTAGTGTTGGAATA 59.228 50.000 0.00 0.00 0.00 1.75
944 955 3.392616 CTCCCCTGCTAGTGTTGGAATAT 59.607 47.826 0.00 0.00 0.00 1.28
961 972 3.498774 ATATAGGTTGCCTCAGCTTGG 57.501 47.619 0.00 0.00 40.80 3.61
1017 1032 2.686816 AATGGCCACAACTACGCGC 61.687 57.895 8.16 0.00 0.00 6.86
1069 1084 1.150081 GCTGCAGCCTCCACCATAT 59.850 57.895 28.76 0.00 34.31 1.78
1085 1100 2.159043 CCATATTCACCGTGCTCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
1256 4460 2.357517 CTGGACTGGCCACGTCAC 60.358 66.667 26.39 19.10 43.33 3.67
1279 4483 2.434185 TGGACCTGCGCAACGATC 60.434 61.111 13.05 6.43 0.00 3.69
1285 4489 1.153765 CTGCGCAACGATCTCTCCA 60.154 57.895 13.05 0.00 0.00 3.86
1411 4866 1.223187 GAACTTTCTCGGCGGTGAAA 58.777 50.000 20.82 20.82 35.18 2.69
1413 4868 1.892209 ACTTTCTCGGCGGTGAAAAT 58.108 45.000 21.78 14.17 35.81 1.82
1446 4901 3.503748 CAGGTTTCATGGGTTCTCTTGAC 59.496 47.826 0.00 0.00 0.00 3.18
1522 4981 1.918957 AGCTAGGCAACCTCTCCAAAT 59.081 47.619 0.00 0.00 34.61 2.32
1560 5019 0.606604 GCCCGGGCGATTCTTATCTA 59.393 55.000 33.60 0.00 0.00 1.98
2013 9293 7.561722 TCTCTAGTCCTCAGCTACAATAACATT 59.438 37.037 0.00 0.00 0.00 2.71
2035 9315 3.967326 TGGTGGGGACATATCAGACTTAG 59.033 47.826 0.00 0.00 46.14 2.18
2044 9324 4.586841 ACATATCAGACTTAGTGGAGAGGC 59.413 45.833 0.00 0.00 0.00 4.70
2371 9945 2.684881 CCATTCAGGTTGGATACTGCAC 59.315 50.000 0.00 0.00 36.26 4.57
2372 9946 3.346315 CATTCAGGTTGGATACTGCACA 58.654 45.455 0.00 0.00 34.76 4.57
2376 9950 2.744202 CAGGTTGGATACTGCACAGTTC 59.256 50.000 8.86 6.53 42.54 3.01
2379 9953 0.249120 TGGATACTGCACAGTTCGGG 59.751 55.000 8.86 0.00 42.54 5.14
2508 10082 1.452145 GGACAACCTTTTCTGGCGCA 61.452 55.000 10.83 0.00 0.00 6.09
3285 10859 2.018515 GAAAACGAGGGTGTGTCCAAA 58.981 47.619 0.00 0.00 38.11 3.28
3336 10913 5.007682 TCAGTGGTAATAAAAGGGCAAGTC 58.992 41.667 0.00 0.00 0.00 3.01
3510 11094 4.889832 GATTGGTGATCTTCAATCGCTT 57.110 40.909 18.58 0.84 39.55 4.68
3834 11421 0.187117 TTGTGGGATTTGTGGCAGGA 59.813 50.000 0.00 0.00 0.00 3.86
4047 11634 2.352561 TATGGGGGTGAAGGACTTGA 57.647 50.000 0.00 0.00 0.00 3.02
4057 11644 6.064717 GGGTGAAGGACTTGATGCTATATTT 58.935 40.000 0.00 0.00 0.00 1.40
4058 11645 6.547510 GGGTGAAGGACTTGATGCTATATTTT 59.452 38.462 0.00 0.00 0.00 1.82
4059 11646 7.068716 GGGTGAAGGACTTGATGCTATATTTTT 59.931 37.037 0.00 0.00 0.00 1.94
4082 11669 6.757897 TTTTATCCAGACTTGCACCTTATG 57.242 37.500 0.00 0.00 0.00 1.90
4108 11695 9.400638 GTATGTACTATCTGCTATCACTTTGTC 57.599 37.037 0.00 0.00 0.00 3.18
4158 11745 3.133362 TGTATCTCGTTGTTCCATACCCC 59.867 47.826 0.00 0.00 0.00 4.95
4183 11770 7.229306 CCTAGTGGAATGCTGCTTTTCATATTA 59.771 37.037 11.83 5.71 34.57 0.98
4353 11941 0.524414 CGTCATGTGTACCCTCGACA 59.476 55.000 0.00 0.00 0.00 4.35
4385 11973 0.318699 CACCTCAGCTCACGTCGAAA 60.319 55.000 0.00 0.00 0.00 3.46
4409 11997 0.390492 TCTGACCGGCAGCATGATAG 59.610 55.000 17.80 0.00 44.52 2.08
4501 12091 2.124570 CGGCTATGGGCTGCACTT 60.125 61.111 2.50 0.00 40.72 3.16
4508 12098 2.743928 GGGCTGCACTTGGTCGAG 60.744 66.667 0.50 0.00 0.00 4.04
4538 12128 0.039617 CTAGAGCCTCAGGATTCGCG 60.040 60.000 0.00 0.00 0.00 5.87
4545 12135 1.733402 CTCAGGATTCGCGGCTCTCT 61.733 60.000 6.13 0.51 0.00 3.10
4566 12157 5.607477 TCTAACACAAGGAACAACGAAGAT 58.393 37.500 0.00 0.00 0.00 2.40
4569 12160 2.157668 CACAAGGAACAACGAAGATCGG 59.842 50.000 4.66 0.00 45.59 4.18
4580 12171 4.473477 ACGAAGATCGGGAGAGAAAAAT 57.527 40.909 4.66 0.00 45.59 1.82
4642 12250 6.530887 TGATGTTTCAATTGTGTGTTGTTCAG 59.469 34.615 5.13 0.00 0.00 3.02
4647 12255 4.393371 TCAATTGTGTGTTGTTCAGTCGAA 59.607 37.500 5.13 0.00 0.00 3.71
4679 12290 4.759693 CCAACATATATAAAAGGCGGCTGA 59.240 41.667 14.21 0.76 0.00 4.26
4687 12298 2.069165 AAAGGCGGCTGAACTTCCCT 62.069 55.000 14.21 0.00 0.00 4.20
4805 12419 1.342674 ACAGGCCATACTACCTCGGAA 60.343 52.381 5.01 0.00 32.56 4.30
4880 12511 6.920758 TCCATGTTGAACACTTTTTAATTCGG 59.079 34.615 0.00 0.00 0.00 4.30
4884 12515 3.892588 TGAACACTTTTTAATTCGGGGCT 59.107 39.130 0.00 0.00 0.00 5.19
4929 12560 5.353678 CCATCTTCAACTTCTGGTCAGATTC 59.646 44.000 1.16 0.00 37.29 2.52
4937 12568 1.203287 TCTGGTCAGATTCGCTCACAG 59.797 52.381 0.00 0.00 31.41 3.66
4942 12573 3.377485 GGTCAGATTCGCTCACAGTAGTA 59.623 47.826 0.00 0.00 0.00 1.82
4945 12576 3.628032 CAGATTCGCTCACAGTAGTAGGA 59.372 47.826 0.00 0.00 0.00 2.94
4970 12601 2.308866 AGAATCCCACACCTCGGATTTT 59.691 45.455 3.01 0.00 46.58 1.82
4971 12602 2.128771 ATCCCACACCTCGGATTTTG 57.871 50.000 0.00 0.00 35.21 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.989639 CTCGAGGGTGCCATGGAA 59.010 61.111 18.40 0.00 0.00 3.53
3 4 3.411114 ATGCTCGAGGGTGCCATGG 62.411 63.158 15.58 7.63 31.76 3.66
5 6 1.703014 ATCATGCTCGAGGGTGCCAT 61.703 55.000 15.58 5.60 31.76 4.40
6 7 2.315781 GATCATGCTCGAGGGTGCCA 62.316 60.000 15.58 3.11 31.76 4.92
8 9 1.596477 GGATCATGCTCGAGGGTGC 60.596 63.158 15.58 0.15 0.00 5.01
17 18 1.333177 GGAGGTACGAGGATCATGCT 58.667 55.000 0.00 0.00 33.17 3.79
18 19 0.039074 CGGAGGTACGAGGATCATGC 60.039 60.000 0.00 0.00 35.47 4.06
37 38 1.277557 AGGCTATGCGGAAGATCATCC 59.722 52.381 6.93 6.93 36.05 3.51
38 39 2.758736 AGGCTATGCGGAAGATCATC 57.241 50.000 0.00 0.00 0.00 2.92
39 40 2.636893 AGAAGGCTATGCGGAAGATCAT 59.363 45.455 0.00 0.00 0.00 2.45
40 41 2.036475 GAGAAGGCTATGCGGAAGATCA 59.964 50.000 0.00 0.00 0.00 2.92
41 42 2.682836 GAGAAGGCTATGCGGAAGATC 58.317 52.381 0.00 0.00 0.00 2.75
42 43 1.000283 CGAGAAGGCTATGCGGAAGAT 60.000 52.381 0.00 0.00 0.00 2.40
44 45 1.218230 GCGAGAAGGCTATGCGGAAG 61.218 60.000 0.00 0.00 0.00 3.46
46 47 1.955495 TTGCGAGAAGGCTATGCGGA 61.955 55.000 0.00 0.00 0.00 5.54
47 48 1.521457 TTGCGAGAAGGCTATGCGG 60.521 57.895 0.00 0.00 0.00 5.69
48 49 1.638467 GTTGCGAGAAGGCTATGCG 59.362 57.895 0.00 0.00 0.00 4.73
50 51 1.667724 CAAGGTTGCGAGAAGGCTATG 59.332 52.381 0.00 0.00 0.00 2.23
52 53 0.673644 GCAAGGTTGCGAGAAGGCTA 60.674 55.000 0.00 0.00 45.11 3.93
54 55 2.563427 GCAAGGTTGCGAGAAGGC 59.437 61.111 0.00 0.00 45.11 4.35
63 64 4.460382 ACAAATGGTATCAGAGCAAGGTTG 59.540 41.667 0.00 0.00 39.49 3.77
64 65 4.666512 ACAAATGGTATCAGAGCAAGGTT 58.333 39.130 0.00 0.00 39.49 3.50
65 66 4.307032 ACAAATGGTATCAGAGCAAGGT 57.693 40.909 0.00 0.00 39.49 3.50
67 68 7.615582 TTCTAACAAATGGTATCAGAGCAAG 57.384 36.000 0.00 0.00 39.49 4.01
69 70 9.679661 TTTATTCTAACAAATGGTATCAGAGCA 57.320 29.630 0.00 0.00 40.58 4.26
73 74 9.221775 GCGTTTTATTCTAACAAATGGTATCAG 57.778 33.333 0.00 0.00 0.00 2.90
74 75 8.952278 AGCGTTTTATTCTAACAAATGGTATCA 58.048 29.630 0.00 0.00 0.00 2.15
79 80 8.531530 GCATTAGCGTTTTATTCTAACAAATGG 58.468 33.333 0.00 0.00 0.00 3.16
81 82 9.632807 TTGCATTAGCGTTTTATTCTAACAAAT 57.367 25.926 0.00 0.00 46.23 2.32
83 84 8.508062 TCTTGCATTAGCGTTTTATTCTAACAA 58.492 29.630 0.00 0.00 46.23 2.83
84 85 8.035165 TCTTGCATTAGCGTTTTATTCTAACA 57.965 30.769 0.00 0.00 46.23 2.41
85 86 9.159470 GATCTTGCATTAGCGTTTTATTCTAAC 57.841 33.333 0.00 0.00 46.23 2.34
86 87 8.888716 TGATCTTGCATTAGCGTTTTATTCTAA 58.111 29.630 0.00 0.00 46.23 2.10
87 88 8.432110 TGATCTTGCATTAGCGTTTTATTCTA 57.568 30.769 0.00 0.00 46.23 2.10
88 89 7.320443 TGATCTTGCATTAGCGTTTTATTCT 57.680 32.000 0.00 0.00 46.23 2.40
89 90 9.322776 CTATGATCTTGCATTAGCGTTTTATTC 57.677 33.333 0.00 0.00 46.23 1.75
90 91 9.056005 TCTATGATCTTGCATTAGCGTTTTATT 57.944 29.630 0.00 0.00 46.23 1.40
93 94 6.510157 CGTCTATGATCTTGCATTAGCGTTTT 60.510 38.462 0.00 0.00 46.23 2.43
95 96 4.445718 CGTCTATGATCTTGCATTAGCGTT 59.554 41.667 0.00 0.00 46.23 4.84
96 97 3.983988 CGTCTATGATCTTGCATTAGCGT 59.016 43.478 0.00 0.00 46.23 5.07
98 99 4.984785 TGTCGTCTATGATCTTGCATTAGC 59.015 41.667 0.00 0.00 42.57 3.09
99 100 5.979517 TGTGTCGTCTATGATCTTGCATTAG 59.020 40.000 0.00 0.00 0.00 1.73
100 101 5.901552 TGTGTCGTCTATGATCTTGCATTA 58.098 37.500 0.00 0.00 0.00 1.90
101 102 4.758688 TGTGTCGTCTATGATCTTGCATT 58.241 39.130 0.00 0.00 0.00 3.56
102 103 4.391405 TGTGTCGTCTATGATCTTGCAT 57.609 40.909 0.00 0.00 0.00 3.96
103 104 3.866883 TGTGTCGTCTATGATCTTGCA 57.133 42.857 0.00 0.00 0.00 4.08
104 105 3.423536 CGATGTGTCGTCTATGATCTTGC 59.576 47.826 0.00 0.00 42.78 4.01
126 127 4.025979 CCTCGTTAACAAATATCGTGCCTC 60.026 45.833 6.39 0.00 0.00 4.70
127 128 3.869246 CCTCGTTAACAAATATCGTGCCT 59.131 43.478 6.39 0.00 0.00 4.75
128 129 3.619929 ACCTCGTTAACAAATATCGTGCC 59.380 43.478 6.39 0.00 0.00 5.01
129 130 4.852609 ACCTCGTTAACAAATATCGTGC 57.147 40.909 6.39 0.00 0.00 5.34
130 131 6.397831 TGAACCTCGTTAACAAATATCGTG 57.602 37.500 6.39 0.00 0.00 4.35
131 132 6.020121 CGATGAACCTCGTTAACAAATATCGT 60.020 38.462 6.39 0.00 34.00 3.73
132 133 6.197655 TCGATGAACCTCGTTAACAAATATCG 59.802 38.462 6.39 10.66 39.62 2.92
135 136 8.974408 CATATCGATGAACCTCGTTAACAAATA 58.026 33.333 8.54 0.00 39.62 1.40
138 139 5.751509 CCATATCGATGAACCTCGTTAACAA 59.248 40.000 8.54 0.00 39.62 2.83
140 141 4.150098 GCCATATCGATGAACCTCGTTAAC 59.850 45.833 8.54 0.00 39.62 2.01
141 142 4.038763 AGCCATATCGATGAACCTCGTTAA 59.961 41.667 8.54 0.00 39.62 2.01
143 144 2.365617 AGCCATATCGATGAACCTCGTT 59.634 45.455 8.54 0.00 39.62 3.85
144 145 1.964223 AGCCATATCGATGAACCTCGT 59.036 47.619 8.54 0.00 39.62 4.18
148 149 4.184629 GGATGTAGCCATATCGATGAACC 58.815 47.826 8.54 0.00 34.73 3.62
150 151 3.197766 GGGGATGTAGCCATATCGATGAA 59.802 47.826 8.54 0.00 34.73 2.57
151 152 2.766263 GGGGATGTAGCCATATCGATGA 59.234 50.000 8.54 0.00 34.73 2.92
152 153 2.481969 CGGGGATGTAGCCATATCGATG 60.482 54.545 8.54 0.00 0.00 3.84
153 154 1.757118 CGGGGATGTAGCCATATCGAT 59.243 52.381 2.16 2.16 0.00 3.59
154 155 1.182667 CGGGGATGTAGCCATATCGA 58.817 55.000 0.00 0.00 0.00 3.59
156 157 1.482593 CTCCGGGGATGTAGCCATATC 59.517 57.143 0.00 0.00 0.00 1.63
157 158 1.573108 CTCCGGGGATGTAGCCATAT 58.427 55.000 0.00 0.00 0.00 1.78
159 160 2.520536 GCTCCGGGGATGTAGCCAT 61.521 63.158 4.80 0.00 0.00 4.40
160 161 3.161450 GCTCCGGGGATGTAGCCA 61.161 66.667 4.80 0.00 0.00 4.75
161 162 2.520536 ATGCTCCGGGGATGTAGCC 61.521 63.158 4.80 0.00 33.99 3.93
162 163 1.302033 CATGCTCCGGGGATGTAGC 60.302 63.158 4.80 4.11 38.67 3.58
165 166 0.398522 TAGTCATGCTCCGGGGATGT 60.399 55.000 4.80 0.00 43.07 3.06
166 167 0.034059 GTAGTCATGCTCCGGGGATG 59.966 60.000 4.80 11.97 43.77 3.51
167 168 1.464376 CGTAGTCATGCTCCGGGGAT 61.464 60.000 4.80 0.00 0.00 3.85
168 169 2.125326 CGTAGTCATGCTCCGGGGA 61.125 63.158 4.80 0.00 0.00 4.81
169 170 2.417516 CGTAGTCATGCTCCGGGG 59.582 66.667 0.00 0.00 0.00 5.73
170 171 2.417516 CCGTAGTCATGCTCCGGG 59.582 66.667 0.00 0.00 42.19 5.73
171 172 2.417516 CCCGTAGTCATGCTCCGG 59.582 66.667 12.13 12.13 45.00 5.14
172 173 1.226974 CACCCGTAGTCATGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
173 174 1.521681 GCACCCGTAGTCATGCTCC 60.522 63.158 0.00 0.00 35.16 4.70
174 175 1.517832 AGCACCCGTAGTCATGCTC 59.482 57.895 0.00 0.00 45.11 4.26
175 176 3.713650 AGCACCCGTAGTCATGCT 58.286 55.556 0.00 0.00 43.50 3.79
176 177 1.521681 GGAGCACCCGTAGTCATGC 60.522 63.158 0.00 0.00 38.39 4.06
177 178 0.103208 GAGGAGCACCCGTAGTCATG 59.897 60.000 0.00 0.00 40.87 3.07
178 179 1.043673 GGAGGAGCACCCGTAGTCAT 61.044 60.000 0.00 0.00 40.87 3.06
179 180 1.681327 GGAGGAGCACCCGTAGTCA 60.681 63.158 0.00 0.00 40.87 3.41
180 181 2.424733 GGGAGGAGCACCCGTAGTC 61.425 68.421 0.00 0.00 40.87 2.59
181 182 2.363925 GGGAGGAGCACCCGTAGT 60.364 66.667 0.00 0.00 40.87 2.73
188 189 0.470341 GGTATCTTGGGGAGGAGCAC 59.530 60.000 0.00 0.00 0.00 4.40
189 190 1.048724 CGGTATCTTGGGGAGGAGCA 61.049 60.000 0.00 0.00 0.00 4.26
190 191 1.749033 CGGTATCTTGGGGAGGAGC 59.251 63.158 0.00 0.00 0.00 4.70
191 192 1.048724 TGCGGTATCTTGGGGAGGAG 61.049 60.000 0.00 0.00 0.00 3.69
194 195 0.251916 TGTTGCGGTATCTTGGGGAG 59.748 55.000 0.00 0.00 0.00 4.30
195 196 0.035820 GTGTTGCGGTATCTTGGGGA 60.036 55.000 0.00 0.00 0.00 4.81
197 198 1.366111 CGGTGTTGCGGTATCTTGGG 61.366 60.000 0.00 0.00 0.00 4.12
198 199 1.366111 CCGGTGTTGCGGTATCTTGG 61.366 60.000 0.00 0.00 0.00 3.61
199 200 1.977594 GCCGGTGTTGCGGTATCTTG 61.978 60.000 1.90 0.00 0.00 3.02
201 202 2.125269 GCCGGTGTTGCGGTATCT 60.125 61.111 1.90 0.00 0.00 1.98
244 245 4.162690 CAGGTACGCAGGGGAGCC 62.163 72.222 0.00 0.00 0.00 4.70
245 246 2.955881 AACAGGTACGCAGGGGAGC 61.956 63.158 0.00 0.00 0.00 4.70
246 247 1.079127 CAACAGGTACGCAGGGGAG 60.079 63.158 0.00 0.00 0.00 4.30
248 249 1.895020 TAGCAACAGGTACGCAGGGG 61.895 60.000 0.00 0.00 0.00 4.79
249 250 0.178068 ATAGCAACAGGTACGCAGGG 59.822 55.000 0.00 0.00 0.00 4.45
250 251 1.134818 TGATAGCAACAGGTACGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
251 252 2.293677 TGATAGCAACAGGTACGCAG 57.706 50.000 0.00 0.00 0.00 5.18
252 253 2.028476 ACTTGATAGCAACAGGTACGCA 60.028 45.455 0.00 0.00 0.00 5.24
254 255 2.852413 CGACTTGATAGCAACAGGTACG 59.148 50.000 0.00 0.00 0.00 3.67
255 256 3.846360 ACGACTTGATAGCAACAGGTAC 58.154 45.455 0.00 0.00 0.00 3.34
257 258 2.299013 TGACGACTTGATAGCAACAGGT 59.701 45.455 0.00 0.00 0.00 4.00
258 259 2.959516 TGACGACTTGATAGCAACAGG 58.040 47.619 0.00 0.00 0.00 4.00
259 260 3.928992 ACATGACGACTTGATAGCAACAG 59.071 43.478 0.00 0.00 0.00 3.16
260 261 3.679502 CACATGACGACTTGATAGCAACA 59.320 43.478 0.00 0.00 0.00 3.33
262 263 3.925379 ACACATGACGACTTGATAGCAA 58.075 40.909 0.00 0.00 0.00 3.91
263 264 3.592898 ACACATGACGACTTGATAGCA 57.407 42.857 0.00 0.00 0.00 3.49
265 266 6.364976 TGTTGTAACACATGACGACTTGATAG 59.635 38.462 0.00 0.90 33.17 2.08
266 267 6.217294 TGTTGTAACACATGACGACTTGATA 58.783 36.000 0.00 0.00 33.17 2.15
267 268 5.053811 TGTTGTAACACATGACGACTTGAT 58.946 37.500 0.00 0.00 33.17 2.57
268 269 4.434520 TGTTGTAACACATGACGACTTGA 58.565 39.130 0.00 0.00 33.17 3.02
269 270 4.787381 TGTTGTAACACATGACGACTTG 57.213 40.909 0.00 0.00 33.17 3.16
278 279 2.295909 GGCACCACATGTTGTAACACAT 59.704 45.455 1.68 0.00 42.51 3.21
280 281 2.415697 GGCACCACATGTTGTAACAC 57.584 50.000 1.68 0.00 42.51 3.32
301 302 4.601084 TCTTAGGCCTCTTATATCCGGAG 58.399 47.826 9.68 0.00 0.00 4.63
302 303 4.669866 TCTTAGGCCTCTTATATCCGGA 57.330 45.455 9.68 6.61 0.00 5.14
303 304 8.707796 TTATATCTTAGGCCTCTTATATCCGG 57.292 38.462 9.68 0.00 0.00 5.14
304 305 9.357161 ACTTATATCTTAGGCCTCTTATATCCG 57.643 37.037 9.68 7.99 0.00 4.18
306 307 9.974980 GCACTTATATCTTAGGCCTCTTATATC 57.025 37.037 9.68 0.00 0.00 1.63
307 308 8.929487 GGCACTTATATCTTAGGCCTCTTATAT 58.071 37.037 9.68 13.20 37.00 0.86
308 309 7.344871 GGGCACTTATATCTTAGGCCTCTTATA 59.655 40.741 9.68 5.88 39.79 0.98
310 311 5.484290 GGGCACTTATATCTTAGGCCTCTTA 59.516 44.000 9.68 0.00 39.79 2.10
311 312 4.287326 GGGCACTTATATCTTAGGCCTCTT 59.713 45.833 9.68 0.00 39.79 2.85
312 313 3.841255 GGGCACTTATATCTTAGGCCTCT 59.159 47.826 9.68 0.00 39.79 3.69
313 314 3.368531 CGGGCACTTATATCTTAGGCCTC 60.369 52.174 9.68 0.00 39.79 4.70
314 315 2.567615 CGGGCACTTATATCTTAGGCCT 59.432 50.000 11.78 11.78 39.79 5.19
316 317 3.258622 AGTCGGGCACTTATATCTTAGGC 59.741 47.826 0.00 0.00 26.56 3.93
317 318 4.082136 GGAGTCGGGCACTTATATCTTAGG 60.082 50.000 0.00 0.00 34.41 2.69
318 319 4.767928 AGGAGTCGGGCACTTATATCTTAG 59.232 45.833 0.00 0.00 34.41 2.18
319 320 4.737578 AGGAGTCGGGCACTTATATCTTA 58.262 43.478 0.00 0.00 34.41 2.10
320 321 3.577919 AGGAGTCGGGCACTTATATCTT 58.422 45.455 0.00 0.00 34.41 2.40
321 322 3.246416 AGGAGTCGGGCACTTATATCT 57.754 47.619 0.00 0.00 34.41 1.98
322 323 3.825014 TGTAGGAGTCGGGCACTTATATC 59.175 47.826 0.00 0.00 34.41 1.63
323 324 3.573110 GTGTAGGAGTCGGGCACTTATAT 59.427 47.826 0.00 0.00 34.41 0.86
324 325 2.954318 GTGTAGGAGTCGGGCACTTATA 59.046 50.000 0.00 0.00 34.41 0.98
325 326 1.755380 GTGTAGGAGTCGGGCACTTAT 59.245 52.381 0.00 0.00 34.41 1.73
326 327 1.180029 GTGTAGGAGTCGGGCACTTA 58.820 55.000 0.00 0.00 34.41 2.24
327 328 0.830444 TGTGTAGGAGTCGGGCACTT 60.830 55.000 9.77 0.00 34.41 3.16
328 329 0.830444 TTGTGTAGGAGTCGGGCACT 60.830 55.000 9.77 0.00 38.45 4.40
329 330 0.669625 GTTGTGTAGGAGTCGGGCAC 60.670 60.000 0.00 3.57 0.00 5.01
330 331 0.830444 AGTTGTGTAGGAGTCGGGCA 60.830 55.000 0.00 0.00 0.00 5.36
331 332 0.108756 GAGTTGTGTAGGAGTCGGGC 60.109 60.000 0.00 0.00 0.00 6.13
333 334 0.879765 ACGAGTTGTGTAGGAGTCGG 59.120 55.000 5.70 0.00 41.67 4.79
334 335 2.159599 GGTACGAGTTGTGTAGGAGTCG 60.160 54.545 0.00 0.00 42.71 4.18
335 336 3.080319 AGGTACGAGTTGTGTAGGAGTC 58.920 50.000 0.00 0.00 0.00 3.36
337 338 4.142513 GGTTAGGTACGAGTTGTGTAGGAG 60.143 50.000 0.00 0.00 0.00 3.69
338 339 3.758554 GGTTAGGTACGAGTTGTGTAGGA 59.241 47.826 0.00 0.00 0.00 2.94
340 341 4.022935 TGTGGTTAGGTACGAGTTGTGTAG 60.023 45.833 0.00 0.00 0.00 2.74
341 342 3.888323 TGTGGTTAGGTACGAGTTGTGTA 59.112 43.478 0.00 0.00 0.00 2.90
342 343 2.694628 TGTGGTTAGGTACGAGTTGTGT 59.305 45.455 0.00 0.00 0.00 3.72
343 344 3.054878 GTGTGGTTAGGTACGAGTTGTG 58.945 50.000 0.00 0.00 0.00 3.33
344 345 2.036346 GGTGTGGTTAGGTACGAGTTGT 59.964 50.000 0.00 0.00 0.00 3.32
345 346 2.036217 TGGTGTGGTTAGGTACGAGTTG 59.964 50.000 0.00 0.00 0.00 3.16
347 348 1.999648 TGGTGTGGTTAGGTACGAGT 58.000 50.000 0.00 0.00 0.00 4.18
348 349 3.604875 ATTGGTGTGGTTAGGTACGAG 57.395 47.619 0.00 0.00 0.00 4.18
349 350 4.282957 TGTAATTGGTGTGGTTAGGTACGA 59.717 41.667 0.00 0.00 0.00 3.43
350 351 4.567971 TGTAATTGGTGTGGTTAGGTACG 58.432 43.478 0.00 0.00 0.00 3.67
351 352 4.393990 GCTGTAATTGGTGTGGTTAGGTAC 59.606 45.833 0.00 0.00 0.00 3.34
353 354 3.073946 AGCTGTAATTGGTGTGGTTAGGT 59.926 43.478 0.00 0.00 0.00 3.08
354 355 3.686016 AGCTGTAATTGGTGTGGTTAGG 58.314 45.455 0.00 0.00 0.00 2.69
355 356 3.689649 GGAGCTGTAATTGGTGTGGTTAG 59.310 47.826 0.00 0.00 0.00 2.34
357 358 2.158534 TGGAGCTGTAATTGGTGTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
358 359 1.423541 TGGAGCTGTAATTGGTGTGGT 59.576 47.619 0.00 0.00 0.00 4.16
360 361 3.149196 ACTTGGAGCTGTAATTGGTGTG 58.851 45.455 0.00 0.00 0.00 3.82
361 362 3.412386 GACTTGGAGCTGTAATTGGTGT 58.588 45.455 0.00 0.00 0.00 4.16
362 363 2.749621 GGACTTGGAGCTGTAATTGGTG 59.250 50.000 0.00 0.00 0.00 4.17
363 364 2.375174 TGGACTTGGAGCTGTAATTGGT 59.625 45.455 0.00 0.00 0.00 3.67
365 366 2.416547 CGTGGACTTGGAGCTGTAATTG 59.583 50.000 0.00 0.00 0.00 2.32
366 367 2.038557 ACGTGGACTTGGAGCTGTAATT 59.961 45.455 0.00 0.00 0.00 1.40
367 368 1.623811 ACGTGGACTTGGAGCTGTAAT 59.376 47.619 0.00 0.00 0.00 1.89
369 370 1.913778 TACGTGGACTTGGAGCTGTA 58.086 50.000 0.00 0.00 0.00 2.74
370 371 1.045407 TTACGTGGACTTGGAGCTGT 58.955 50.000 0.00 0.00 0.00 4.40
371 372 1.429463 GTTACGTGGACTTGGAGCTG 58.571 55.000 0.00 0.00 0.00 4.24
373 374 0.672711 GGGTTACGTGGACTTGGAGC 60.673 60.000 0.00 0.00 0.00 4.70
374 375 0.036671 GGGGTTACGTGGACTTGGAG 60.037 60.000 0.00 0.00 0.00 3.86
376 377 0.399075 AAGGGGTTACGTGGACTTGG 59.601 55.000 0.00 0.00 0.00 3.61
377 378 2.037511 TGTAAGGGGTTACGTGGACTTG 59.962 50.000 0.00 0.00 0.00 3.16
378 379 2.328319 TGTAAGGGGTTACGTGGACTT 58.672 47.619 0.00 0.00 0.00 3.01
380 381 3.195396 TGTATGTAAGGGGTTACGTGGAC 59.805 47.826 0.00 0.00 0.00 4.02
381 382 3.439154 TGTATGTAAGGGGTTACGTGGA 58.561 45.455 0.00 0.00 0.00 4.02
382 383 3.448301 TCTGTATGTAAGGGGTTACGTGG 59.552 47.826 0.00 0.00 0.00 4.94
383 384 4.724074 TCTGTATGTAAGGGGTTACGTG 57.276 45.455 0.00 0.00 0.00 4.49
384 385 5.945144 ATTCTGTATGTAAGGGGTTACGT 57.055 39.130 0.00 0.00 0.00 3.57
389 390 9.317827 ACGTATATTATTCTGTATGTAAGGGGT 57.682 33.333 0.00 0.00 0.00 4.95
390 391 9.582431 CACGTATATTATTCTGTATGTAAGGGG 57.418 37.037 0.00 0.00 0.00 4.79
396 397 8.978539 CAGCAACACGTATATTATTCTGTATGT 58.021 33.333 0.00 0.00 0.00 2.29
397 398 8.978539 ACAGCAACACGTATATTATTCTGTATG 58.021 33.333 0.00 0.00 30.38 2.39
399 400 9.454585 GTACAGCAACACGTATATTATTCTGTA 57.545 33.333 0.00 0.00 33.71 2.74
400 401 7.166970 CGTACAGCAACACGTATATTATTCTGT 59.833 37.037 0.00 0.00 35.55 3.41
401 402 7.377662 TCGTACAGCAACACGTATATTATTCTG 59.622 37.037 0.00 0.00 39.18 3.02
402 403 7.420002 TCGTACAGCAACACGTATATTATTCT 58.580 34.615 0.00 0.00 39.18 2.40
407 408 7.168637 CCTTAATCGTACAGCAACACGTATATT 59.831 37.037 0.00 1.13 39.18 1.28
409 410 5.972973 CCTTAATCGTACAGCAACACGTATA 59.027 40.000 0.00 0.00 39.18 1.47
410 411 4.802039 CCTTAATCGTACAGCAACACGTAT 59.198 41.667 0.00 0.00 39.18 3.06
411 412 4.168014 CCTTAATCGTACAGCAACACGTA 58.832 43.478 0.00 0.00 39.18 3.57
413 414 2.991190 ACCTTAATCGTACAGCAACACG 59.009 45.455 0.00 0.00 39.48 4.49
415 416 4.242475 CAGACCTTAATCGTACAGCAACA 58.758 43.478 0.00 0.00 0.00 3.33
416 417 3.617263 CCAGACCTTAATCGTACAGCAAC 59.383 47.826 0.00 0.00 0.00 4.17
417 418 3.369052 CCCAGACCTTAATCGTACAGCAA 60.369 47.826 0.00 0.00 0.00 3.91
419 420 2.822764 CCCAGACCTTAATCGTACAGC 58.177 52.381 0.00 0.00 0.00 4.40
421 422 1.483415 GGCCCAGACCTTAATCGTACA 59.517 52.381 0.00 0.00 0.00 2.90
422 423 1.537562 CGGCCCAGACCTTAATCGTAC 60.538 57.143 0.00 0.00 0.00 3.67
423 424 0.748450 CGGCCCAGACCTTAATCGTA 59.252 55.000 0.00 0.00 0.00 3.43
425 426 1.227556 CCGGCCCAGACCTTAATCG 60.228 63.158 0.00 0.00 0.00 3.34
426 427 0.544697 TTCCGGCCCAGACCTTAATC 59.455 55.000 0.00 0.00 0.00 1.75
427 428 0.546598 CTTCCGGCCCAGACCTTAAT 59.453 55.000 0.00 0.00 0.00 1.40
428 429 0.545787 TCTTCCGGCCCAGACCTTAA 60.546 55.000 0.00 0.00 0.00 1.85
429 430 0.976073 CTCTTCCGGCCCAGACCTTA 60.976 60.000 0.00 0.00 0.00 2.69
430 431 2.203938 TCTTCCGGCCCAGACCTT 60.204 61.111 0.00 0.00 0.00 3.50
431 432 2.537714 ATCTCTTCCGGCCCAGACCT 62.538 60.000 0.00 0.00 0.00 3.85
432 433 1.627297 AATCTCTTCCGGCCCAGACC 61.627 60.000 0.00 0.00 0.00 3.85
433 434 0.179070 GAATCTCTTCCGGCCCAGAC 60.179 60.000 0.00 0.00 0.00 3.51
434 435 0.617535 TGAATCTCTTCCGGCCCAGA 60.618 55.000 0.00 0.00 0.00 3.86
436 437 1.907739 CTGAATCTCTTCCGGCCCA 59.092 57.895 0.00 0.00 0.00 5.36
437 438 1.524849 GCTGAATCTCTTCCGGCCC 60.525 63.158 0.00 0.00 0.00 5.80
439 440 0.873743 CGAGCTGAATCTCTTCCGGC 60.874 60.000 0.00 0.00 32.67 6.13
440 441 0.457851 ACGAGCTGAATCTCTTCCGG 59.542 55.000 0.00 0.00 0.00 5.14
441 442 1.135257 ACACGAGCTGAATCTCTTCCG 60.135 52.381 0.00 0.00 0.00 4.30
442 443 2.663826 ACACGAGCTGAATCTCTTCC 57.336 50.000 0.00 0.00 0.00 3.46
443 444 5.181690 AGATACACGAGCTGAATCTCTTC 57.818 43.478 0.00 0.00 0.00 2.87
444 445 6.488344 TGATAGATACACGAGCTGAATCTCTT 59.512 38.462 0.00 0.00 0.00 2.85
445 446 6.000840 TGATAGATACACGAGCTGAATCTCT 58.999 40.000 0.00 0.00 0.00 3.10
446 447 6.247727 TGATAGATACACGAGCTGAATCTC 57.752 41.667 0.00 0.00 0.00 2.75
447 448 6.432472 TCATGATAGATACACGAGCTGAATCT 59.568 38.462 0.00 0.00 0.00 2.40
448 449 6.616017 TCATGATAGATACACGAGCTGAATC 58.384 40.000 0.00 0.00 0.00 2.52
449 450 6.581171 TCATGATAGATACACGAGCTGAAT 57.419 37.500 0.00 0.00 0.00 2.57
451 452 5.707298 TCATCATGATAGATACACGAGCTGA 59.293 40.000 8.15 0.00 0.00 4.26
452 453 5.947443 TCATCATGATAGATACACGAGCTG 58.053 41.667 8.15 0.00 0.00 4.24
456 457 9.305925 GCATAAATCATCATGATAGATACACGA 57.694 33.333 8.15 0.00 35.76 4.35
457 458 8.546244 GGCATAAATCATCATGATAGATACACG 58.454 37.037 8.15 5.81 35.76 4.49
458 459 8.834465 GGGCATAAATCATCATGATAGATACAC 58.166 37.037 8.15 0.00 35.76 2.90
460 461 7.994911 TGGGGCATAAATCATCATGATAGATAC 59.005 37.037 8.15 0.00 35.76 2.24
461 462 8.104838 TGGGGCATAAATCATCATGATAGATA 57.895 34.615 8.15 0.36 35.76 1.98
462 463 6.977104 TGGGGCATAAATCATCATGATAGAT 58.023 36.000 8.15 10.75 35.76 1.98
464 465 6.831868 TCATGGGGCATAAATCATCATGATAG 59.168 38.462 8.15 3.45 35.76 2.08
465 466 6.733509 TCATGGGGCATAAATCATCATGATA 58.266 36.000 8.15 0.00 35.76 2.15
466 467 5.585894 TCATGGGGCATAAATCATCATGAT 58.414 37.500 1.18 1.18 39.09 2.45
467 468 5.000570 TCATGGGGCATAAATCATCATGA 57.999 39.130 0.00 0.00 37.68 3.07
468 469 5.420739 TCATCATGGGGCATAAATCATCATG 59.579 40.000 0.00 0.00 33.83 3.07
471 472 5.988310 TTCATCATGGGGCATAAATCATC 57.012 39.130 0.00 0.00 0.00 2.92
472 473 6.750660 TTTTCATCATGGGGCATAAATCAT 57.249 33.333 0.00 0.00 0.00 2.45
474 475 6.872020 CAGATTTTCATCATGGGGCATAAATC 59.128 38.462 0.00 0.00 30.37 2.17
475 476 6.328148 ACAGATTTTCATCATGGGGCATAAAT 59.672 34.615 0.00 0.00 0.00 1.40
477 478 5.210430 ACAGATTTTCATCATGGGGCATAA 58.790 37.500 0.00 0.00 0.00 1.90
479 480 3.649843 ACAGATTTTCATCATGGGGCAT 58.350 40.909 0.00 0.00 0.00 4.40
480 481 3.104519 ACAGATTTTCATCATGGGGCA 57.895 42.857 0.00 0.00 0.00 5.36
481 482 3.703052 AGAACAGATTTTCATCATGGGGC 59.297 43.478 0.00 0.00 0.00 5.80
482 483 5.927281 AAGAACAGATTTTCATCATGGGG 57.073 39.130 0.00 0.00 0.00 4.96
484 485 5.514204 GCGAAAGAACAGATTTTCATCATGG 59.486 40.000 0.00 0.00 33.89 3.66
486 487 6.258230 TGCGAAAGAACAGATTTTCATCAT 57.742 33.333 0.00 0.00 33.89 2.45
488 489 6.991485 TTTGCGAAAGAACAGATTTTCATC 57.009 33.333 0.00 0.00 33.89 2.92
490 491 7.032580 TCTTTTTGCGAAAGAACAGATTTTCA 58.967 30.769 11.37 0.00 33.72 2.69
491 492 7.449934 TCTTTTTGCGAAAGAACAGATTTTC 57.550 32.000 11.37 0.00 33.72 2.29
493 494 7.042523 CCATTCTTTTTGCGAAAGAACAGATTT 60.043 33.333 22.43 9.22 45.58 2.17
494 495 6.421801 CCATTCTTTTTGCGAAAGAACAGATT 59.578 34.615 22.43 9.75 45.58 2.40
495 496 5.922544 CCATTCTTTTTGCGAAAGAACAGAT 59.077 36.000 22.43 10.02 45.58 2.90
496 497 5.163561 ACCATTCTTTTTGCGAAAGAACAGA 60.164 36.000 22.43 10.93 45.58 3.41
497 498 5.043248 ACCATTCTTTTTGCGAAAGAACAG 58.957 37.500 22.43 19.12 45.58 3.16
498 499 4.803088 CACCATTCTTTTTGCGAAAGAACA 59.197 37.500 22.43 8.77 45.58 3.18
499 500 4.209080 CCACCATTCTTTTTGCGAAAGAAC 59.791 41.667 22.43 0.00 45.58 3.01
500 501 4.367450 CCACCATTCTTTTTGCGAAAGAA 58.633 39.130 22.30 22.30 46.44 2.52
502 503 2.476241 GCCACCATTCTTTTTGCGAAAG 59.524 45.455 0.00 2.79 0.00 2.62
503 504 2.159043 TGCCACCATTCTTTTTGCGAAA 60.159 40.909 0.00 0.00 0.00 3.46
506 507 1.000385 TCTGCCACCATTCTTTTTGCG 60.000 47.619 0.00 0.00 0.00 4.85
507 508 2.611224 CCTCTGCCACCATTCTTTTTGC 60.611 50.000 0.00 0.00 0.00 3.68
508 509 2.629617 ACCTCTGCCACCATTCTTTTTG 59.370 45.455 0.00 0.00 0.00 2.44
510 511 2.242043 CACCTCTGCCACCATTCTTTT 58.758 47.619 0.00 0.00 0.00 2.27
512 513 0.610232 GCACCTCTGCCACCATTCTT 60.610 55.000 0.00 0.00 37.45 2.52
513 514 1.001641 GCACCTCTGCCACCATTCT 60.002 57.895 0.00 0.00 37.45 2.40
524 525 0.613853 TACTACCAAGCGGCACCTCT 60.614 55.000 1.45 0.00 34.57 3.69
525 526 0.464452 ATACTACCAAGCGGCACCTC 59.536 55.000 1.45 0.00 34.57 3.85
526 527 0.909623 AATACTACCAAGCGGCACCT 59.090 50.000 1.45 0.00 34.57 4.00
528 529 5.178809 CCTATAAAATACTACCAAGCGGCAC 59.821 44.000 1.45 0.00 34.57 5.01
529 530 5.070714 TCCTATAAAATACTACCAAGCGGCA 59.929 40.000 1.45 0.00 34.57 5.69
530 531 5.544650 TCCTATAAAATACTACCAAGCGGC 58.455 41.667 0.00 0.00 34.57 6.53
532 533 8.015658 GCAATTCCTATAAAATACTACCAAGCG 58.984 37.037 0.00 0.00 0.00 4.68
533 534 8.846211 TGCAATTCCTATAAAATACTACCAAGC 58.154 33.333 0.00 0.00 0.00 4.01
535 536 9.349713 CCTGCAATTCCTATAAAATACTACCAA 57.650 33.333 0.00 0.00 0.00 3.67
536 537 7.447238 GCCTGCAATTCCTATAAAATACTACCA 59.553 37.037 0.00 0.00 0.00 3.25
537 538 7.360946 CGCCTGCAATTCCTATAAAATACTACC 60.361 40.741 0.00 0.00 0.00 3.18
539 540 7.172532 CACGCCTGCAATTCCTATAAAATACTA 59.827 37.037 0.00 0.00 0.00 1.82
540 541 6.017109 CACGCCTGCAATTCCTATAAAATACT 60.017 38.462 0.00 0.00 0.00 2.12
545 546 2.948979 CCACGCCTGCAATTCCTATAAA 59.051 45.455 0.00 0.00 0.00 1.40
705 711 3.947910 AATTGGGCTTTGATGTGACTG 57.052 42.857 0.00 0.00 0.00 3.51
762 773 0.889306 AGGAAGGTACGCAGTGTCTC 59.111 55.000 0.00 0.00 45.73 3.36
801 812 5.471456 ACTGTTTGAAAGATTAGTCTGCTGG 59.529 40.000 0.00 0.00 34.13 4.85
932 943 4.227300 TGAGGCAACCTATATTCCAACACT 59.773 41.667 0.00 0.00 31.76 3.55
939 950 3.817647 CCAAGCTGAGGCAACCTATATTC 59.182 47.826 0.00 0.00 41.70 1.75
943 954 3.890527 CCAAGCTGAGGCAACCTAT 57.109 52.632 0.00 0.00 41.70 2.57
961 972 4.250431 GTGTGTGTGTGTGGGCGC 62.250 66.667 0.00 0.00 0.00 6.53
1017 1032 4.463879 CAGCTGTGCGAGGAGGGG 62.464 72.222 5.25 0.00 0.00 4.79
1069 1084 1.112916 TGGACAGAGAGCACGGTGAA 61.113 55.000 13.29 0.00 0.00 3.18
1085 1100 0.530744 GGGTATATCGCTCGCATGGA 59.469 55.000 0.00 0.00 0.00 3.41
1285 4489 6.022315 TGGGAAAACCATACAAATCCTTCAT 58.978 36.000 0.00 0.00 46.80 2.57
1316 4644 3.181967 CCCGCAGCGAACGAGAAG 61.182 66.667 18.75 0.00 0.00 2.85
1411 4866 4.534647 TGAAACCTGGTATGGGCATATT 57.465 40.909 0.00 0.00 0.00 1.28
1413 4868 3.436325 CCATGAAACCTGGTATGGGCATA 60.436 47.826 16.28 0.00 37.11 3.14
1446 4901 4.970711 AGAGGTTGAGATATGCCAATCTG 58.029 43.478 2.82 0.00 36.33 2.90
1522 4981 3.560453 GGGCTTATGTCAAGGTGTACCAA 60.560 47.826 3.56 0.00 38.89 3.67
1549 5008 7.363443 GGAGTGGAGGCTGTATAGATAAGAATC 60.363 44.444 0.00 0.00 0.00 2.52
1994 9274 5.185454 CACCAATGTTATTGTAGCTGAGGA 58.815 41.667 0.00 0.00 0.00 3.71
2013 9293 2.568546 AGTCTGATATGTCCCCACCA 57.431 50.000 0.00 0.00 0.00 4.17
2035 9315 1.207329 ACAATTCGGTAGCCTCTCCAC 59.793 52.381 0.00 0.00 0.00 4.02
2044 9324 8.905702 CAAAATCTTCAAAGAACAATTCGGTAG 58.094 33.333 0.00 0.00 38.77 3.18
2371 9945 1.867233 CAACTGACAAGACCCGAACTG 59.133 52.381 0.00 0.00 0.00 3.16
2372 9946 1.202651 CCAACTGACAAGACCCGAACT 60.203 52.381 0.00 0.00 0.00 3.01
2376 9950 0.602905 GACCCAACTGACAAGACCCG 60.603 60.000 0.00 0.00 0.00 5.28
2379 9953 0.602905 CGGGACCCAACTGACAAGAC 60.603 60.000 12.15 0.00 0.00 3.01
3285 10859 2.796557 TCATCGGACTGTCTCTCAAGT 58.203 47.619 7.85 0.00 0.00 3.16
3405 10982 4.649218 AGAGAGCTTAGTTCCTCTGGAATC 59.351 45.833 2.17 0.00 44.04 2.52
3510 11094 3.889538 TCTTCGAAAGGTCAAGAGACTCA 59.110 43.478 5.02 0.00 44.36 3.41
3834 11421 5.393866 AGTCCACAAAATACCATCCAAACT 58.606 37.500 0.00 0.00 0.00 2.66
4016 11603 0.690762 CCCCCATATCCGGGTAACAG 59.309 60.000 0.00 0.00 45.80 3.16
4058 11645 6.719370 ACATAAGGTGCAAGTCTGGATAAAAA 59.281 34.615 0.00 0.00 0.00 1.94
4059 11646 6.245408 ACATAAGGTGCAAGTCTGGATAAAA 58.755 36.000 0.00 0.00 0.00 1.52
4060 11647 5.815581 ACATAAGGTGCAAGTCTGGATAAA 58.184 37.500 0.00 0.00 0.00 1.40
4061 11648 5.435686 ACATAAGGTGCAAGTCTGGATAA 57.564 39.130 0.00 0.00 0.00 1.75
4062 11649 6.099701 ACATACATAAGGTGCAAGTCTGGATA 59.900 38.462 0.00 0.00 0.00 2.59
4063 11650 5.104360 ACATACATAAGGTGCAAGTCTGGAT 60.104 40.000 0.00 0.00 0.00 3.41
4064 11651 4.225042 ACATACATAAGGTGCAAGTCTGGA 59.775 41.667 0.00 0.00 0.00 3.86
4065 11652 4.517285 ACATACATAAGGTGCAAGTCTGG 58.483 43.478 0.00 0.00 0.00 3.86
4066 11653 6.341316 AGTACATACATAAGGTGCAAGTCTG 58.659 40.000 0.00 0.00 0.00 3.51
4067 11654 6.546428 AGTACATACATAAGGTGCAAGTCT 57.454 37.500 0.00 0.00 0.00 3.24
4068 11655 8.361139 AGATAGTACATACATAAGGTGCAAGTC 58.639 37.037 0.00 0.00 0.00 3.01
4069 11656 8.144478 CAGATAGTACATACATAAGGTGCAAGT 58.856 37.037 0.00 0.00 0.00 3.16
4070 11657 7.116948 GCAGATAGTACATACATAAGGTGCAAG 59.883 40.741 0.00 0.00 0.00 4.01
4071 11658 6.929049 GCAGATAGTACATACATAAGGTGCAA 59.071 38.462 0.00 0.00 0.00 4.08
4072 11659 6.267699 AGCAGATAGTACATACATAAGGTGCA 59.732 38.462 0.00 0.00 0.00 4.57
4073 11660 6.692486 AGCAGATAGTACATACATAAGGTGC 58.308 40.000 0.00 0.00 0.00 5.01
4075 11662 9.755122 TGATAGCAGATAGTACATACATAAGGT 57.245 33.333 0.00 0.00 0.00 3.50
4080 11667 9.920133 CAAAGTGATAGCAGATAGTACATACAT 57.080 33.333 0.00 0.00 0.00 2.29
4081 11668 8.914011 ACAAAGTGATAGCAGATAGTACATACA 58.086 33.333 0.00 0.00 0.00 2.29
4082 11669 9.400638 GACAAAGTGATAGCAGATAGTACATAC 57.599 37.037 0.00 0.00 0.00 2.39
4126 11713 8.928733 TGGAACAACGAGATACATTAACTTTAC 58.071 33.333 0.00 0.00 31.92 2.01
4158 11745 4.978083 ATGAAAAGCAGCATTCCACTAG 57.022 40.909 8.11 0.00 0.00 2.57
4203 11790 9.979578 TGCATTTACTGTTTCACATAAGAAATT 57.020 25.926 0.00 0.00 39.46 1.82
4310 11897 1.996898 TCGCGTGCGAACAAAATCTAT 59.003 42.857 15.36 0.00 46.01 1.98
4333 11920 0.179145 GTCGAGGGTACACATGACGG 60.179 60.000 0.00 0.00 0.00 4.79
4353 11941 2.692368 AGGTGCATCATCCCCGGT 60.692 61.111 0.00 0.00 0.00 5.28
4360 11948 0.461516 CGTGAGCTGAGGTGCATCAT 60.462 55.000 0.00 0.00 34.99 2.45
4385 11973 1.047596 ATGCTGCCGGTCAGATCTCT 61.048 55.000 24.32 5.56 45.72 3.10
4440 12030 2.265182 CGGGTGTGCGGGTTTTCAT 61.265 57.895 0.00 0.00 0.00 2.57
4441 12031 2.902846 CGGGTGTGCGGGTTTTCA 60.903 61.111 0.00 0.00 0.00 2.69
4508 12098 4.273257 GCTCTAGGGGCGAGCGAC 62.273 72.222 0.00 0.00 43.69 5.19
4538 12128 3.402628 TGTTCCTTGTGTTAGAGAGCC 57.597 47.619 0.00 0.00 0.00 4.70
4545 12135 4.446385 CGATCTTCGTTGTTCCTTGTGTTA 59.554 41.667 0.00 0.00 34.72 2.41
4566 12157 3.774766 TCTCCATCATTTTTCTCTCCCGA 59.225 43.478 0.00 0.00 0.00 5.14
4569 12160 8.970859 TTTATCTCTCCATCATTTTTCTCTCC 57.029 34.615 0.00 0.00 0.00 3.71
4580 12171 7.582667 TCGTCTATGTTTTATCTCTCCATCA 57.417 36.000 0.00 0.00 0.00 3.07
4642 12250 2.163818 TGTTGGAGGTGATGTTCGAC 57.836 50.000 0.00 0.00 0.00 4.20
4647 12255 7.448469 GCCTTTTATATATGTTGGAGGTGATGT 59.552 37.037 0.00 0.00 0.00 3.06
4679 12290 6.014771 AGTCCTTTTCTTGTAAGGGAAGTT 57.985 37.500 0.00 0.00 42.02 2.66
4687 12298 7.287061 TGAGATTTGGAGTCCTTTTCTTGTAA 58.713 34.615 11.33 0.00 0.00 2.41
4808 12422 2.477845 ATTTGCTTTTGGGCATGTCC 57.522 45.000 10.20 10.20 42.09 4.02
4880 12511 3.555168 CCGTAAAGTCATCCAGATAGCCC 60.555 52.174 0.00 0.00 0.00 5.19
4884 12515 3.640029 GGACCCGTAAAGTCATCCAGATA 59.360 47.826 0.00 0.00 35.89 1.98
4929 12560 5.752892 TCTAAATCCTACTACTGTGAGCG 57.247 43.478 0.00 0.00 0.00 5.03
4937 12568 6.326843 AGGTGTGGGATTCTAAATCCTACTAC 59.673 42.308 25.85 21.76 46.12 2.73
4942 12573 3.134804 CGAGGTGTGGGATTCTAAATCCT 59.865 47.826 16.19 0.00 38.26 3.24
4945 12576 3.112263 TCCGAGGTGTGGGATTCTAAAT 58.888 45.455 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.