Multiple sequence alignment - TraesCS5D01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G348000 chr5D 100.000 2878 0 0 1 2878 433195978 433198855 0.000000e+00 5315.0
1 TraesCS5D01G348000 chr5D 94.545 880 44 3 1 878 522357714 522358591 0.000000e+00 1356.0
2 TraesCS5D01G348000 chr5D 94.213 864 46 4 26 886 356832218 356833080 0.000000e+00 1315.0
3 TraesCS5D01G348000 chr5D 84.131 731 93 17 878 1601 433331914 433332628 0.000000e+00 686.0
4 TraesCS5D01G348000 chr5D 76.033 242 50 6 1040 1274 435258820 435259060 5.040000e-23 119.0
5 TraesCS5D01G348000 chr5D 80.000 125 25 0 1150 1274 435255676 435255800 3.050000e-15 93.5
6 TraesCS5D01G348000 chr5D 91.667 48 3 1 1607 1653 433218862 433218909 6.660000e-07 65.8
7 TraesCS5D01G348000 chr5B 96.313 1519 47 5 878 2389 526668043 526669559 0.000000e+00 2486.0
8 TraesCS5D01G348000 chr5B 88.129 278 17 4 2400 2677 526670676 526670937 1.660000e-82 316.0
9 TraesCS5D01G348000 chr5B 87.665 227 18 3 1688 1914 526674912 526675128 3.680000e-64 255.0
10 TraesCS5D01G348000 chr5B 75.410 244 48 10 1040 1274 528570100 528570340 1.090000e-19 108.0
11 TraesCS5D01G348000 chr7D 97.045 880 24 2 1 878 104667611 104668490 0.000000e+00 1480.0
12 TraesCS5D01G348000 chr7D 96.098 205 6 2 2676 2878 20410043 20410247 1.650000e-87 333.0
13 TraesCS5D01G348000 chr7D 96.098 205 6 2 2676 2878 477113841 477113637 1.650000e-87 333.0
14 TraesCS5D01G348000 chr3A 95.398 891 37 4 1 887 696473475 696474365 0.000000e+00 1415.0
15 TraesCS5D01G348000 chr3A 95.573 881 34 4 1 877 51573946 51573067 0.000000e+00 1406.0
16 TraesCS5D01G348000 chr3A 94.200 862 46 4 20 878 169082485 169083345 0.000000e+00 1312.0
17 TraesCS5D01G348000 chr6D 94.875 878 42 3 1 876 207063923 207063047 0.000000e+00 1369.0
18 TraesCS5D01G348000 chr6D 95.652 207 7 2 2674 2878 100352535 100352741 5.940000e-87 331.0
19 TraesCS5D01G348000 chr7A 94.381 872 45 3 9 877 672525406 672526276 0.000000e+00 1336.0
20 TraesCS5D01G348000 chr1D 93.878 882 50 3 1 878 102827989 102828870 0.000000e+00 1327.0
21 TraesCS5D01G348000 chr1D 96.098 205 6 2 2676 2878 402344074 402343870 1.650000e-87 333.0
22 TraesCS5D01G348000 chr3D 96.585 205 5 2 2676 2878 123306319 123306115 3.550000e-89 339.0
23 TraesCS5D01G348000 chr3D 96.098 205 6 2 2676 2878 278444204 278444000 1.650000e-87 333.0
24 TraesCS5D01G348000 chr3D 96.098 205 6 2 2676 2878 278445631 278445427 1.650000e-87 333.0
25 TraesCS5D01G348000 chr4A 96.098 205 6 2 2676 2878 604810526 604810730 1.650000e-87 333.0
26 TraesCS5D01G348000 chr2A 96.098 205 6 2 2676 2878 526341627 526341831 1.650000e-87 333.0
27 TraesCS5D01G348000 chr4B 78.529 340 65 7 1732 2065 623726246 623725909 1.740000e-52 217.0
28 TraesCS5D01G348000 chr5A 77.016 248 44 11 1040 1277 549196084 549196328 2.330000e-26 130.0
29 TraesCS5D01G348000 chr5A 84.211 76 9 3 2140 2214 547621362 547621435 1.430000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G348000 chr5D 433195978 433198855 2877 False 5315 5315 100.000000 1 2878 1 chr5D.!!$F2 2877
1 TraesCS5D01G348000 chr5D 522357714 522358591 877 False 1356 1356 94.545000 1 878 1 chr5D.!!$F5 877
2 TraesCS5D01G348000 chr5D 356832218 356833080 862 False 1315 1315 94.213000 26 886 1 chr5D.!!$F1 860
3 TraesCS5D01G348000 chr5D 433331914 433332628 714 False 686 686 84.131000 878 1601 1 chr5D.!!$F4 723
4 TraesCS5D01G348000 chr5B 526668043 526675128 7085 False 1019 2486 90.702333 878 2677 3 chr5B.!!$F2 1799
5 TraesCS5D01G348000 chr7D 104667611 104668490 879 False 1480 1480 97.045000 1 878 1 chr7D.!!$F2 877
6 TraesCS5D01G348000 chr3A 696473475 696474365 890 False 1415 1415 95.398000 1 887 1 chr3A.!!$F2 886
7 TraesCS5D01G348000 chr3A 51573067 51573946 879 True 1406 1406 95.573000 1 877 1 chr3A.!!$R1 876
8 TraesCS5D01G348000 chr3A 169082485 169083345 860 False 1312 1312 94.200000 20 878 1 chr3A.!!$F1 858
9 TraesCS5D01G348000 chr6D 207063047 207063923 876 True 1369 1369 94.875000 1 876 1 chr6D.!!$R1 875
10 TraesCS5D01G348000 chr7A 672525406 672526276 870 False 1336 1336 94.381000 9 877 1 chr7A.!!$F1 868
11 TraesCS5D01G348000 chr1D 102827989 102828870 881 False 1327 1327 93.878000 1 878 1 chr1D.!!$F1 877
12 TraesCS5D01G348000 chr3D 278444000 278445631 1631 True 333 333 96.098000 2676 2878 2 chr3D.!!$R2 202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.818040 AAACCTGACACAAGGACGGC 60.818 55.000 0.0 0.0 40.02 5.68 F
814 823 1.194781 ACAGAGACCGGGTGATGCTT 61.195 55.000 3.3 0.0 0.00 3.91 F
1679 1693 1.528586 CTGCACTTTTCGTCCACTCTG 59.471 52.381 0.0 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1358 0.039708 GCAAAGAAGTGGCAGCAGAC 60.040 55.0 0.0 0.0 0.00 3.51 R
1736 1750 0.319405 AAAACCAAGCAGCATGAGGC 59.681 50.0 0.0 0.0 39.69 4.70 R
2772 9172 0.904865 TCTCTCCACCACGCAAGGAT 60.905 55.0 0.0 0.0 46.39 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.818040 AAACCTGACACAAGGACGGC 60.818 55.000 0.00 0.00 40.02 5.68
222 223 1.892209 AAAGGGAGTTGTGCTAACCG 58.108 50.000 1.57 0.00 31.70 4.44
236 239 2.735762 GCTAACCGAAGACAATCTCGCT 60.736 50.000 0.00 0.00 0.00 4.93
335 340 2.749865 TTTGCGCGCTCTACATGGC 61.750 57.895 33.29 0.00 0.00 4.40
573 579 1.741706 ACGTGATCTACACTACACCGG 59.258 52.381 0.00 0.00 46.24 5.28
801 810 8.300286 GCTATGTGCATCTTAGTTATACAGAGA 58.700 37.037 0.00 0.00 42.31 3.10
814 823 1.194781 ACAGAGACCGGGTGATGCTT 61.195 55.000 3.30 0.00 0.00 3.91
908 918 5.647589 ACACATTGCATCACATGAAGATTC 58.352 37.500 0.00 0.00 0.00 2.52
932 942 6.916360 ACCAAAAAGGGGTGCATATATATG 57.084 37.500 17.01 17.01 43.89 1.78
1137 1147 1.855295 TGCAAGGTACCGTGATCCTA 58.145 50.000 29.16 8.23 0.00 2.94
1146 1156 5.068636 GGTACCGTGATCCTATCTTCACTA 58.931 45.833 0.00 0.00 40.05 2.74
1461 1474 5.047188 GTGTTGGTACTTGATGTTTTTGGG 58.953 41.667 0.00 0.00 0.00 4.12
1605 1619 4.104102 ACAAAGTCTTGGTGTTATCCTCCA 59.896 41.667 0.00 0.00 36.82 3.86
1669 1683 6.619801 TTTTCTTCCTAGTCTGCACTTTTC 57.380 37.500 0.00 0.00 33.62 2.29
1679 1693 1.528586 CTGCACTTTTCGTCCACTCTG 59.471 52.381 0.00 0.00 0.00 3.35
1720 1734 7.147811 GGTCCAGTCTATGTCAGTCTTATTCTT 60.148 40.741 0.00 0.00 0.00 2.52
1736 1750 6.994496 TCTTATTCTTCCATTATGGCAGTCTG 59.006 38.462 10.46 0.00 37.47 3.51
1767 1781 5.110940 TGCTTGGTTTTACATTCGTAACC 57.889 39.130 0.00 0.00 37.33 2.85
1905 1919 1.027357 CATGCTAGCACATGGTTCCC 58.973 55.000 22.07 0.00 43.05 3.97
1907 1921 0.403655 TGCTAGCACATGGTTCCCAA 59.596 50.000 14.93 0.00 36.95 4.12
1924 1938 3.763360 TCCCAACCAGTGCATAATTCAAG 59.237 43.478 0.00 0.00 0.00 3.02
1931 1945 5.984926 ACCAGTGCATAATTCAAGTTGTTTG 59.015 36.000 2.11 0.00 38.17 2.93
1975 1989 7.051000 GGTCATTTCTCTAGGCTAATTCAACT 58.949 38.462 0.00 0.00 0.00 3.16
2033 2047 8.840833 AAAAACACTGTTTATTCAACCAACTT 57.159 26.923 7.59 0.00 33.97 2.66
2051 2065 9.623000 AACCAACTTATCTTAGTGTTTTACTGT 57.377 29.630 0.00 0.00 40.65 3.55
2077 2091 4.803329 ATAAATCTGAGGGCTTGTCCAT 57.197 40.909 0.00 0.00 36.21 3.41
2120 2141 4.082136 GGGACACTCTTCTGTAACTAGTGG 60.082 50.000 0.00 0.00 41.43 4.00
2122 2143 5.243283 GGACACTCTTCTGTAACTAGTGGAA 59.757 44.000 0.00 0.00 41.43 3.53
2128 2149 7.016268 ACTCTTCTGTAACTAGTGGAAAATCCA 59.984 37.037 0.00 0.00 45.98 3.41
2155 2176 5.091552 TGTTTCTAGTACCAGATTCCCTGT 58.908 41.667 0.00 0.00 41.33 4.00
2222 2243 2.711547 ACCACTTCCTTACTTTCTGCCT 59.288 45.455 0.00 0.00 0.00 4.75
2228 2249 4.207891 TCCTTACTTTCTGCCTTAGCTG 57.792 45.455 0.00 0.00 40.80 4.24
2264 2285 2.928334 CTTCCTCCAGATTCCATGTGG 58.072 52.381 0.00 0.00 44.60 4.17
2342 2363 9.860898 AGCCATTTATTTAGCTTTCTTTTGTAG 57.139 29.630 0.00 0.00 29.27 2.74
2374 2395 8.787852 GTTTTCTAGATTCAGTCAAAATCCAGT 58.212 33.333 0.00 0.00 34.34 4.00
2375 2396 7.912056 TTCTAGATTCAGTCAAAATCCAGTG 57.088 36.000 0.00 0.00 34.34 3.66
2389 2410 2.116238 TCCAGTGGCCATAGTACCTTC 58.884 52.381 9.72 0.00 0.00 3.46
2391 2412 2.103263 CCAGTGGCCATAGTACCTTCTC 59.897 54.545 9.72 0.00 0.00 2.87
2392 2413 3.034635 CAGTGGCCATAGTACCTTCTCT 58.965 50.000 9.72 0.00 0.00 3.10
2394 2415 4.649674 CAGTGGCCATAGTACCTTCTCTAA 59.350 45.833 9.72 0.00 0.00 2.10
2396 2417 4.650131 GTGGCCATAGTACCTTCTCTAACT 59.350 45.833 9.72 0.00 0.00 2.24
2397 2418 4.894114 TGGCCATAGTACCTTCTCTAACTC 59.106 45.833 0.00 0.00 0.00 3.01
2405 2919 6.781943 AGTACCTTCTCTAACTCACTAGTGT 58.218 40.000 21.99 6.25 35.62 3.55
2408 2922 5.477637 ACCTTCTCTAACTCACTAGTGTTCC 59.522 44.000 21.99 0.00 35.62 3.62
2412 2926 2.814280 AACTCACTAGTGTTCCGTGG 57.186 50.000 21.99 7.74 35.62 4.94
2413 2927 1.700955 ACTCACTAGTGTTCCGTGGT 58.299 50.000 21.99 8.28 33.57 4.16
2454 3579 9.429359 CAGAACTCTATGTTTTTGAGTATGAGT 57.571 33.333 0.00 0.00 39.78 3.41
2473 3598 4.759693 TGAGTTTTATTTGTGGTCATCGCT 59.240 37.500 0.00 0.00 0.00 4.93
2488 3613 5.530519 TCATCGCTGACAGTATTTTCAAC 57.469 39.130 3.99 0.00 0.00 3.18
2489 3614 4.994217 TCATCGCTGACAGTATTTTCAACA 59.006 37.500 3.99 0.00 0.00 3.33
2490 3615 5.468409 TCATCGCTGACAGTATTTTCAACAA 59.532 36.000 3.99 0.00 0.00 2.83
2491 3616 5.743026 TCGCTGACAGTATTTTCAACAAA 57.257 34.783 3.99 0.00 0.00 2.83
2492 3617 6.312399 TCGCTGACAGTATTTTCAACAAAT 57.688 33.333 3.99 0.00 0.00 2.32
2493 3618 6.142139 TCGCTGACAGTATTTTCAACAAATG 58.858 36.000 3.99 0.00 0.00 2.32
2494 3619 5.164158 CGCTGACAGTATTTTCAACAAATGC 60.164 40.000 3.99 0.00 0.00 3.56
2535 3660 8.578308 TTTTGAAGAGTCAATTAACATGCTTG 57.422 30.769 0.00 0.00 43.29 4.01
2537 3662 6.902341 TGAAGAGTCAATTAACATGCTTGTC 58.098 36.000 5.61 0.00 34.06 3.18
2554 3679 2.699954 TGTCTTTGCTTAGCTAGTGCC 58.300 47.619 5.60 3.78 40.80 5.01
2556 3681 1.548719 TCTTTGCTTAGCTAGTGCCGA 59.451 47.619 5.60 8.50 40.80 5.54
2558 3683 1.722011 TTGCTTAGCTAGTGCCGAAC 58.278 50.000 5.60 0.00 40.80 3.95
2593 3718 9.793259 AACTTTATGATCTTTCTAACAAGACCA 57.207 29.630 0.00 0.00 35.57 4.02
2594 3719 9.220767 ACTTTATGATCTTTCTAACAAGACCAC 57.779 33.333 0.00 0.00 35.57 4.16
2646 3771 5.884232 TGTACTATGTATGACACGAGAACCT 59.116 40.000 0.00 0.00 0.00 3.50
2701 3826 0.769247 AGTTAGGGTTCTGCCGGTTT 59.231 50.000 1.90 0.00 38.44 3.27
2742 9141 2.534042 AAGATGGAGGAAGACGAGGA 57.466 50.000 0.00 0.00 0.00 3.71
2859 9260 2.507407 AAGGGAAGCCGAGCAAATAA 57.493 45.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.279169 AGTGAGGTTCCAATGAAACACATG 59.721 41.667 0.00 0.00 40.22 3.21
222 223 1.184349 CGACGAGCGAGATTGTCTTC 58.816 55.000 7.09 0.00 44.57 2.87
236 239 3.418913 CCGTGCCAATTGCGACGA 61.419 61.111 22.12 0.00 45.60 4.20
335 340 3.270027 TGGACGCTATTTGAATGACTGG 58.730 45.455 0.00 0.00 0.00 4.00
622 628 1.920325 TGAAGACCTCCCTGGCCAG 60.920 63.158 26.87 26.87 40.22 4.85
683 691 0.248949 GTCCGCCTATGTCGAAGGAC 60.249 60.000 5.80 4.29 43.71 3.85
801 810 3.857157 ACATAATAAGCATCACCCGGT 57.143 42.857 0.00 0.00 0.00 5.28
814 823 7.359595 GCATCAAGCGGATACAAAACATAATA 58.640 34.615 0.00 0.00 33.95 0.98
1137 1147 7.335162 CGAGTTCGGGTTCACTAGTGAAGAT 62.335 48.000 33.36 16.11 41.73 2.40
1146 1156 0.826672 AGGACGAGTTCGGGTTCACT 60.827 55.000 6.48 0.00 44.95 3.41
1250 1260 1.302192 GACAAGGGCCACTGCGTTA 60.302 57.895 6.18 0.00 38.85 3.18
1348 1358 0.039708 GCAAAGAAGTGGCAGCAGAC 60.040 55.000 0.00 0.00 0.00 3.51
1461 1474 0.304705 CACAAGCGTCTTCACACCAC 59.695 55.000 0.00 0.00 0.00 4.16
1669 1683 3.611766 AAAGGATAACCAGAGTGGACG 57.388 47.619 0.00 0.00 40.96 4.79
1679 1693 4.663334 ACTGGACCAAGAAAAGGATAACC 58.337 43.478 0.00 0.00 0.00 2.85
1736 1750 0.319405 AAAACCAAGCAGCATGAGGC 59.681 50.000 0.00 0.00 39.69 4.70
1767 1781 2.489329 AGATTCAGAACCAATGCAACCG 59.511 45.455 0.00 0.00 0.00 4.44
1812 1826 5.144359 CGTATACAAACAAACAAGCTCACC 58.856 41.667 3.32 0.00 0.00 4.02
1905 1919 5.531634 ACAACTTGAATTATGCACTGGTTG 58.468 37.500 9.65 9.65 37.90 3.77
1907 1921 5.789643 AACAACTTGAATTATGCACTGGT 57.210 34.783 0.00 0.00 0.00 4.00
1909 1923 7.467557 AACAAACAACTTGAATTATGCACTG 57.532 32.000 0.00 0.00 38.50 3.66
1910 1924 7.548780 ACAAACAAACAACTTGAATTATGCACT 59.451 29.630 0.00 0.00 38.50 4.40
1924 1938 6.327154 AGGCTTTGTACTACAAACAAACAAC 58.673 36.000 9.86 0.00 42.55 3.32
1931 1945 4.577283 TGACCAAGGCTTTGTACTACAAAC 59.423 41.667 9.86 7.63 42.55 2.93
1952 1966 8.103305 ACAAGTTGAATTAGCCTAGAGAAATGA 58.897 33.333 10.54 0.00 0.00 2.57
1975 1989 8.539544 TCACTTTCCTATATCTCACATCAACAA 58.460 33.333 0.00 0.00 0.00 2.83
2024 2038 9.878599 CAGTAAAACACTAAGATAAGTTGGTTG 57.121 33.333 0.00 0.00 34.98 3.77
2051 2065 7.811282 TGGACAAGCCCTCAGATTTATAAATA 58.189 34.615 10.68 0.00 34.97 1.40
2120 2141 8.161699 TGGTACTAGAAACAAAGTGGATTTTC 57.838 34.615 0.00 0.00 0.00 2.29
2122 2143 7.514721 TCTGGTACTAGAAACAAAGTGGATTT 58.485 34.615 6.45 0.00 0.00 2.17
2128 2149 6.272558 AGGGAATCTGGTACTAGAAACAAAGT 59.727 38.462 13.39 0.00 0.00 2.66
2132 2153 5.677319 CAGGGAATCTGGTACTAGAAACA 57.323 43.478 13.39 0.00 39.76 2.83
2172 2193 9.678260 AGAAAGCAAGATAAACACAGATAGAAT 57.322 29.630 0.00 0.00 0.00 2.40
2191 2212 5.937111 AGTAAGGAAGTGGTTAAGAAAGCA 58.063 37.500 0.00 0.00 40.68 3.91
2202 2223 3.425162 AGGCAGAAAGTAAGGAAGTGG 57.575 47.619 0.00 0.00 0.00 4.00
2264 2285 5.586643 GGAGGAAGAAACCATTGATGTAGAC 59.413 44.000 0.00 0.00 0.00 2.59
2346 2367 8.786898 TGGATTTTGACTGAATCTAGAAAACAG 58.213 33.333 16.93 16.93 34.65 3.16
2356 2377 3.119352 GGCCACTGGATTTTGACTGAATC 60.119 47.826 0.00 0.00 33.71 2.52
2374 2395 4.880164 AGTTAGAGAAGGTACTATGGCCA 58.120 43.478 8.56 8.56 38.49 5.36
2375 2396 4.894114 TGAGTTAGAGAAGGTACTATGGCC 59.106 45.833 0.00 0.00 38.49 5.36
2389 2410 4.379603 CCACGGAACACTAGTGAGTTAGAG 60.380 50.000 29.30 14.40 38.06 2.43
2391 2412 3.255149 ACCACGGAACACTAGTGAGTTAG 59.745 47.826 29.30 16.75 38.06 2.34
2392 2413 3.225104 ACCACGGAACACTAGTGAGTTA 58.775 45.455 29.30 0.00 38.06 2.24
2394 2415 1.700955 ACCACGGAACACTAGTGAGT 58.299 50.000 29.30 18.30 38.06 3.41
2396 2417 3.547054 AAAACCACGGAACACTAGTGA 57.453 42.857 29.30 0.00 38.06 3.41
2442 3567 9.126151 TGACCACAAATAAAACTCATACTCAAA 57.874 29.630 0.00 0.00 0.00 2.69
2443 3568 8.684386 TGACCACAAATAAAACTCATACTCAA 57.316 30.769 0.00 0.00 0.00 3.02
2444 3569 8.862325 ATGACCACAAATAAAACTCATACTCA 57.138 30.769 0.00 0.00 0.00 3.41
2445 3570 8.116753 CGATGACCACAAATAAAACTCATACTC 58.883 37.037 0.00 0.00 0.00 2.59
2446 3571 7.414098 GCGATGACCACAAATAAAACTCATACT 60.414 37.037 0.00 0.00 0.00 2.12
2447 3572 6.687105 GCGATGACCACAAATAAAACTCATAC 59.313 38.462 0.00 0.00 0.00 2.39
2454 3579 4.517075 TGTCAGCGATGACCACAAATAAAA 59.483 37.500 29.19 5.21 37.99 1.52
2473 3598 9.979578 ATAAAGCATTTGTTGAAAATACTGTCA 57.020 25.926 0.00 0.00 39.63 3.58
2511 3636 7.715657 ACAAGCATGTTAATTGACTCTTCAAA 58.284 30.769 1.75 0.00 40.08 2.69
2535 3660 1.661112 CGGCACTAGCTAAGCAAAGAC 59.339 52.381 16.86 1.98 41.70 3.01
2537 3662 2.010145 TCGGCACTAGCTAAGCAAAG 57.990 50.000 16.86 9.36 41.70 2.77
2593 3718 3.686726 GCTTGCAGCTACACTTATGAAGT 59.313 43.478 0.00 0.00 39.39 3.01
2594 3719 4.270178 GCTTGCAGCTACACTTATGAAG 57.730 45.455 0.00 0.00 38.45 3.02
2627 3752 5.221244 CCATGAGGTTCTCGTGTCATACATA 60.221 44.000 13.89 0.00 43.64 2.29
2646 3771 9.886132 CATAGTTTCATGATCTATCATCCATGA 57.114 33.333 14.21 0.00 45.23 3.07
2701 3826 1.420430 CCCTACAATCTCCGCCCTAA 58.580 55.000 0.00 0.00 0.00 2.69
2772 9172 0.904865 TCTCTCCACCACGCAAGGAT 60.905 55.000 0.00 0.00 46.39 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.