Multiple sequence alignment - TraesCS5D01G347700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G347700 chr5D 100.000 2399 0 0 1 2399 433108024 433110422 0.000000e+00 4431.0
1 TraesCS5D01G347700 chr5D 93.835 811 38 5 728 1534 433148693 433149495 0.000000e+00 1210.0
2 TraesCS5D01G347700 chr5D 83.966 1160 146 21 686 1818 433057852 433058998 0.000000e+00 1075.0
3 TraesCS5D01G347700 chr5D 93.067 476 31 2 245 720 433143294 433143767 0.000000e+00 695.0
4 TraesCS5D01G347700 chr5D 92.637 421 30 1 1456 1876 433179314 433179733 2.640000e-169 604.0
5 TraesCS5D01G347700 chr5D 96.875 256 7 1 1 255 433162576 433162831 6.130000e-116 427.0
6 TraesCS5D01G347700 chr5D 86.347 271 29 7 245 510 433066777 433067044 3.020000e-74 289.0
7 TraesCS5D01G347700 chr5B 89.872 1254 100 11 645 1891 526654477 526655710 0.000000e+00 1587.0
8 TraesCS5D01G347700 chr5B 82.948 1167 152 23 686 1825 526633570 526634716 0.000000e+00 1009.0
9 TraesCS5D01G347700 chr5B 84.452 939 114 14 913 1827 526597553 526598483 0.000000e+00 896.0
10 TraesCS5D01G347700 chr5B 84.146 328 31 20 2029 2349 526658069 526658382 5.010000e-77 298.0
11 TraesCS5D01G347700 chr5B 86.447 273 30 5 245 510 526653795 526654067 2.330000e-75 292.0
12 TraesCS5D01G347700 chr5B 89.051 137 9 6 2037 2169 526661987 526662121 5.310000e-37 165.0
13 TraesCS5D01G347700 chr5B 95.122 41 2 0 1796 1836 526660042 526660082 5.540000e-07 65.8
14 TraesCS5D01G347700 chr5B 94.444 36 2 0 2364 2399 323741257 323741222 3.330000e-04 56.5
15 TraesCS5D01G347700 chr5A 84.247 1168 140 29 689 1827 547710967 547712119 0.000000e+00 1098.0
16 TraesCS5D01G347700 chr5A 84.124 1159 142 23 688 1818 547658127 547659271 0.000000e+00 1083.0
17 TraesCS5D01G347700 chr5A 86.594 276 27 7 242 510 547726652 547726924 1.800000e-76 296.0
18 TraesCS5D01G347700 chr5A 97.059 34 1 0 2366 2399 358467169 358467136 9.260000e-05 58.4
19 TraesCS5D01G347700 chr6D 98.394 249 3 1 1 248 93797099 93797347 1.020000e-118 436.0
20 TraesCS5D01G347700 chr6D 95.522 268 8 3 1 266 362495401 362495136 2.200000e-115 425.0
21 TraesCS5D01G347700 chr3A 98.776 245 3 0 1 245 275401278 275401034 1.020000e-118 436.0
22 TraesCS5D01G347700 chr3A 98.776 245 3 0 1 245 528581478 528581234 1.020000e-118 436.0
23 TraesCS5D01G347700 chr2D 98.776 245 2 1 1 245 399108484 399108727 3.660000e-118 435.0
24 TraesCS5D01G347700 chr2D 86.364 88 9 3 1954 2039 474833211 474833297 2.540000e-15 93.5
25 TraesCS5D01G347700 chr1D 98.367 245 4 0 1 245 130637694 130637938 4.740000e-117 431.0
26 TraesCS5D01G347700 chr4D 97.600 250 6 0 1 250 450364824 450365073 1.700000e-116 429.0
27 TraesCS5D01G347700 chr4D 97.143 35 1 0 2365 2399 47859311 47859345 2.580000e-05 60.2
28 TraesCS5D01G347700 chr4D 97.143 35 1 0 2365 2399 47879315 47879349 2.580000e-05 60.2
29 TraesCS5D01G347700 chr1A 97.610 251 4 2 1 250 135787395 135787146 1.700000e-116 429.0
30 TraesCS5D01G347700 chr6A 84.211 133 17 4 1912 2043 91303587 91303458 2.500000e-25 126.0
31 TraesCS5D01G347700 chr4B 87.912 91 11 0 1949 2039 496851521 496851611 9.070000e-20 108.0
32 TraesCS5D01G347700 chr7D 88.372 86 7 3 1953 2036 307321660 307321576 1.520000e-17 100.0
33 TraesCS5D01G347700 chr3D 92.424 66 5 0 1973 2038 445317302 445317237 7.060000e-16 95.3
34 TraesCS5D01G347700 chr3D 100.000 31 0 0 2369 2399 349761748 349761718 9.260000e-05 58.4
35 TraesCS5D01G347700 chr2A 89.189 74 6 2 1966 2038 75243987 75244059 9.130000e-15 91.6
36 TraesCS5D01G347700 chr2A 100.000 31 0 0 2369 2399 178159902 178159932 9.260000e-05 58.4
37 TraesCS5D01G347700 chrUn 85.714 70 10 0 1969 2038 68783275 68783206 9.200000e-10 75.0
38 TraesCS5D01G347700 chr2B 100.000 31 0 0 2369 2399 160277327 160277297 9.260000e-05 58.4
39 TraesCS5D01G347700 chr2B 90.698 43 3 1 2357 2399 612197294 612197253 3.330000e-04 56.5
40 TraesCS5D01G347700 chr6B 90.476 42 4 0 2358 2399 486153989 486153948 3.330000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G347700 chr5D 433108024 433110422 2398 False 4431.00 4431 100.0000 1 2399 1 chr5D.!!$F3 2398
1 TraesCS5D01G347700 chr5D 433148693 433149495 802 False 1210.00 1210 93.8350 728 1534 1 chr5D.!!$F5 806
2 TraesCS5D01G347700 chr5D 433057852 433058998 1146 False 1075.00 1075 83.9660 686 1818 1 chr5D.!!$F1 1132
3 TraesCS5D01G347700 chr5B 526633570 526634716 1146 False 1009.00 1009 82.9480 686 1825 1 chr5B.!!$F2 1139
4 TraesCS5D01G347700 chr5B 526597553 526598483 930 False 896.00 896 84.4520 913 1827 1 chr5B.!!$F1 914
5 TraesCS5D01G347700 chr5B 526653795 526662121 8326 False 481.56 1587 88.9276 245 2349 5 chr5B.!!$F3 2104
6 TraesCS5D01G347700 chr5A 547710967 547712119 1152 False 1098.00 1098 84.2470 689 1827 1 chr5A.!!$F2 1138
7 TraesCS5D01G347700 chr5A 547658127 547659271 1144 False 1083.00 1083 84.1240 688 1818 1 chr5A.!!$F1 1130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 543 0.106719 ACCTCTTGTGTTGTGTGGGG 60.107 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 4876 0.76489 TTGGAGTGAGTGGAACCCTG 59.235 55.0 0.0 0.0 37.8 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.520021 TTCTCCTAATGATGTGATCCCATT 57.480 37.500 0.00 0.00 35.09 3.16
24 25 7.631510 TTCTCCTAATGATGTGATCCCATTA 57.368 36.000 0.00 0.00 33.21 1.90
25 26 7.631510 TCTCCTAATGATGTGATCCCATTAA 57.368 36.000 0.00 0.00 33.84 1.40
26 27 8.223378 TCTCCTAATGATGTGATCCCATTAAT 57.777 34.615 0.00 0.00 33.84 1.40
27 28 8.324306 TCTCCTAATGATGTGATCCCATTAATC 58.676 37.037 0.00 0.00 33.84 1.75
28 29 7.987820 TCCTAATGATGTGATCCCATTAATCA 58.012 34.615 0.00 0.00 33.84 2.57
29 30 8.447200 TCCTAATGATGTGATCCCATTAATCAA 58.553 33.333 0.00 0.00 35.04 2.57
30 31 9.081204 CCTAATGATGTGATCCCATTAATCAAA 57.919 33.333 0.00 0.00 35.04 2.69
33 34 8.715190 ATGATGTGATCCCATTAATCAAATGA 57.285 30.769 0.00 0.00 46.81 2.57
34 35 7.944061 TGATGTGATCCCATTAATCAAATGAC 58.056 34.615 0.00 0.00 46.81 3.06
35 36 7.560626 TGATGTGATCCCATTAATCAAATGACA 59.439 33.333 0.00 0.00 46.81 3.58
36 37 7.715266 TGTGATCCCATTAATCAAATGACAA 57.285 32.000 0.00 0.00 46.81 3.18
37 38 7.546358 TGTGATCCCATTAATCAAATGACAAC 58.454 34.615 0.00 0.00 46.81 3.32
38 39 7.396907 TGTGATCCCATTAATCAAATGACAACT 59.603 33.333 0.00 0.00 46.81 3.16
39 40 7.917505 GTGATCCCATTAATCAAATGACAACTC 59.082 37.037 0.00 0.00 46.81 3.01
40 41 7.835682 TGATCCCATTAATCAAATGACAACTCT 59.164 33.333 0.00 0.00 46.81 3.24
41 42 8.599624 ATCCCATTAATCAAATGACAACTCTT 57.400 30.769 0.00 0.00 46.81 2.85
42 43 8.421249 TCCCATTAATCAAATGACAACTCTTT 57.579 30.769 0.00 0.00 46.81 2.52
43 44 8.306038 TCCCATTAATCAAATGACAACTCTTTG 58.694 33.333 0.00 0.00 46.81 2.77
55 56 5.091261 ACAACTCTTTGTCTATGGCTAGG 57.909 43.478 0.00 0.00 42.67 3.02
56 57 4.777896 ACAACTCTTTGTCTATGGCTAGGA 59.222 41.667 0.00 0.00 42.67 2.94
57 58 5.248477 ACAACTCTTTGTCTATGGCTAGGAA 59.752 40.000 0.00 0.00 42.67 3.36
58 59 6.173339 CAACTCTTTGTCTATGGCTAGGAAA 58.827 40.000 0.00 0.00 0.00 3.13
59 60 5.735766 ACTCTTTGTCTATGGCTAGGAAAC 58.264 41.667 0.00 0.00 0.00 2.78
60 61 5.248477 ACTCTTTGTCTATGGCTAGGAAACA 59.752 40.000 0.00 0.00 0.00 2.83
61 62 6.069963 ACTCTTTGTCTATGGCTAGGAAACAT 60.070 38.462 0.00 0.00 0.00 2.71
62 63 7.125811 ACTCTTTGTCTATGGCTAGGAAACATA 59.874 37.037 0.00 0.00 0.00 2.29
63 64 7.857456 TCTTTGTCTATGGCTAGGAAACATAA 58.143 34.615 0.00 0.00 0.00 1.90
64 65 7.769044 TCTTTGTCTATGGCTAGGAAACATAAC 59.231 37.037 0.00 0.00 0.00 1.89
65 66 5.925509 TGTCTATGGCTAGGAAACATAACC 58.074 41.667 0.00 0.00 0.00 2.85
66 67 5.427157 TGTCTATGGCTAGGAAACATAACCA 59.573 40.000 0.00 0.00 0.00 3.67
67 68 6.101150 TGTCTATGGCTAGGAAACATAACCAT 59.899 38.462 0.00 0.00 39.62 3.55
68 69 6.651225 GTCTATGGCTAGGAAACATAACCATC 59.349 42.308 0.00 0.00 37.58 3.51
69 70 5.653255 ATGGCTAGGAAACATAACCATCT 57.347 39.130 0.00 0.00 30.76 2.90
70 71 5.450818 TGGCTAGGAAACATAACCATCTT 57.549 39.130 0.00 0.00 0.00 2.40
71 72 5.826643 TGGCTAGGAAACATAACCATCTTT 58.173 37.500 0.00 0.00 0.00 2.52
72 73 5.652014 TGGCTAGGAAACATAACCATCTTTG 59.348 40.000 0.00 0.00 0.00 2.77
73 74 5.885912 GGCTAGGAAACATAACCATCTTTGA 59.114 40.000 0.00 0.00 0.00 2.69
74 75 6.547510 GGCTAGGAAACATAACCATCTTTGAT 59.452 38.462 0.00 0.00 0.00 2.57
75 76 7.255277 GGCTAGGAAACATAACCATCTTTGATC 60.255 40.741 0.00 0.00 0.00 2.92
76 77 7.283127 GCTAGGAAACATAACCATCTTTGATCA 59.717 37.037 0.00 0.00 0.00 2.92
77 78 9.177608 CTAGGAAACATAACCATCTTTGATCAA 57.822 33.333 3.38 3.38 0.00 2.57
78 79 8.599624 AGGAAACATAACCATCTTTGATCAAT 57.400 30.769 9.40 0.00 0.00 2.57
79 80 8.472413 AGGAAACATAACCATCTTTGATCAATG 58.528 33.333 9.40 11.92 0.00 2.82
80 81 8.469200 GGAAACATAACCATCTTTGATCAATGA 58.531 33.333 22.11 22.11 0.00 2.57
81 82 9.512435 GAAACATAACCATCTTTGATCAATGAG 57.488 33.333 23.52 13.75 0.00 2.90
82 83 7.035840 ACATAACCATCTTTGATCAATGAGC 57.964 36.000 23.52 0.00 0.00 4.26
83 84 6.832384 ACATAACCATCTTTGATCAATGAGCT 59.168 34.615 23.52 9.94 0.00 4.09
84 85 7.994911 ACATAACCATCTTTGATCAATGAGCTA 59.005 33.333 23.52 14.34 0.00 3.32
85 86 6.690194 AACCATCTTTGATCAATGAGCTAC 57.310 37.500 23.52 0.00 0.00 3.58
86 87 5.999044 ACCATCTTTGATCAATGAGCTACT 58.001 37.500 23.52 8.74 0.00 2.57
87 88 6.054295 ACCATCTTTGATCAATGAGCTACTC 58.946 40.000 23.52 0.00 0.00 2.59
88 89 6.053650 CCATCTTTGATCAATGAGCTACTCA 58.946 40.000 23.52 0.00 44.99 3.41
89 90 6.541278 CCATCTTTGATCAATGAGCTACTCAA 59.459 38.462 23.52 0.00 44.04 3.02
90 91 7.254829 CCATCTTTGATCAATGAGCTACTCAAG 60.255 40.741 23.52 8.97 44.04 3.02
91 92 6.705302 TCTTTGATCAATGAGCTACTCAAGT 58.295 36.000 17.55 0.00 44.04 3.16
92 93 7.840931 TCTTTGATCAATGAGCTACTCAAGTA 58.159 34.615 17.55 0.00 44.04 2.24
93 94 7.978414 TCTTTGATCAATGAGCTACTCAAGTAG 59.022 37.037 17.55 11.99 44.04 2.57
108 109 6.067263 CTCAAGTAGAGGCATACTAGTGAC 57.933 45.833 5.39 0.00 40.84 3.67
109 110 5.506708 TCAAGTAGAGGCATACTAGTGACA 58.493 41.667 5.39 0.00 34.90 3.58
110 111 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
111 112 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
112 113 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
113 114 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
114 115 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
115 116 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
116 117 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
117 118 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
118 119 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
119 120 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
120 121 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
121 122 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
122 123 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
123 124 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
124 125 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
125 126 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
126 127 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
127 128 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
128 129 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
129 130 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
130 131 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
131 132 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
132 133 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
133 134 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
134 135 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
135 136 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
136 137 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
137 138 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
138 139 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
139 140 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
141 142 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
143 144 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
144 145 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
148 149 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
149 150 7.609532 TGTATTCACACATGTATCATGTTTCCA 59.390 33.333 11.89 0.00 0.00 3.53
150 151 6.499234 TTCACACATGTATCATGTTTCCAG 57.501 37.500 11.89 4.63 0.00 3.86
151 152 5.559770 TCACACATGTATCATGTTTCCAGT 58.440 37.500 11.89 5.17 0.00 4.00
152 153 6.003326 TCACACATGTATCATGTTTCCAGTT 58.997 36.000 11.89 0.00 0.00 3.16
153 154 7.164803 TCACACATGTATCATGTTTCCAGTTA 58.835 34.615 11.89 0.00 0.00 2.24
154 155 7.663493 TCACACATGTATCATGTTTCCAGTTAA 59.337 33.333 11.89 0.00 0.00 2.01
155 156 8.461222 CACACATGTATCATGTTTCCAGTTAAT 58.539 33.333 11.89 0.00 0.00 1.40
156 157 9.679661 ACACATGTATCATGTTTCCAGTTAATA 57.320 29.630 11.89 0.00 0.00 0.98
157 158 9.935682 CACATGTATCATGTTTCCAGTTAATAC 57.064 33.333 11.89 0.00 0.00 1.89
158 159 9.679661 ACATGTATCATGTTTCCAGTTAATACA 57.320 29.630 9.21 0.00 0.00 2.29
166 167 9.722056 CATGTTTCCAGTTAATACAATTCTAGC 57.278 33.333 0.00 0.00 0.00 3.42
167 168 8.856153 TGTTTCCAGTTAATACAATTCTAGCA 57.144 30.769 0.00 0.00 0.00 3.49
168 169 9.461312 TGTTTCCAGTTAATACAATTCTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
169 170 9.722056 GTTTCCAGTTAATACAATTCTAGCATG 57.278 33.333 0.00 0.00 0.00 4.06
170 171 9.679661 TTTCCAGTTAATACAATTCTAGCATGA 57.320 29.630 0.00 0.00 0.00 3.07
171 172 9.679661 TTCCAGTTAATACAATTCTAGCATGAA 57.320 29.630 0.00 0.00 0.00 2.57
172 173 9.851686 TCCAGTTAATACAATTCTAGCATGAAT 57.148 29.630 0.00 0.00 38.19 2.57
231 232 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
243 244 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
254 255 5.627735 GCATATTTCCTTCAGAGTGGACTCA 60.628 44.000 9.43 0.00 45.21 3.41
256 257 2.685106 TCCTTCAGAGTGGACTCAGT 57.315 50.000 9.43 0.00 45.21 3.41
257 258 2.242926 TCCTTCAGAGTGGACTCAGTG 58.757 52.381 9.43 0.24 45.21 3.66
260 261 0.823769 TCAGAGTGGACTCAGTGCGT 60.824 55.000 9.43 0.00 45.21 5.24
261 262 0.881796 CAGAGTGGACTCAGTGCGTA 59.118 55.000 9.43 0.00 45.21 4.42
263 264 2.683362 CAGAGTGGACTCAGTGCGTATA 59.317 50.000 9.43 0.00 45.21 1.47
266 267 4.402793 AGAGTGGACTCAGTGCGTATATTT 59.597 41.667 9.43 0.00 45.21 1.40
271 272 6.311935 GTGGACTCAGTGCGTATATTTTGTTA 59.688 38.462 0.00 0.00 0.00 2.41
281 282 6.651643 TGCGTATATTTTGTTAGGTGTGAGTT 59.348 34.615 0.00 0.00 0.00 3.01
282 283 7.148540 TGCGTATATTTTGTTAGGTGTGAGTTC 60.149 37.037 0.00 0.00 0.00 3.01
288 289 4.271696 TGTTAGGTGTGAGTTCTGATGG 57.728 45.455 0.00 0.00 0.00 3.51
293 294 2.163010 GGTGTGAGTTCTGATGGCAATG 59.837 50.000 0.00 0.00 0.00 2.82
294 295 2.816087 GTGTGAGTTCTGATGGCAATGT 59.184 45.455 0.00 0.00 0.00 2.71
309 310 3.578688 GCAATGTCCTAACAGCAAAAGG 58.421 45.455 0.00 0.00 39.20 3.11
318 319 4.580580 CCTAACAGCAAAAGGAGAACTTGT 59.419 41.667 0.00 0.00 39.96 3.16
320 321 4.639135 ACAGCAAAAGGAGAACTTGTTC 57.361 40.909 5.44 5.44 39.96 3.18
322 323 4.706962 ACAGCAAAAGGAGAACTTGTTCTT 59.293 37.500 15.94 0.34 39.96 2.52
326 327 6.153510 AGCAAAAGGAGAACTTGTTCTTTTCT 59.846 34.615 15.94 11.45 39.96 2.52
327 328 6.254373 GCAAAAGGAGAACTTGTTCTTTTCTG 59.746 38.462 15.94 11.81 39.96 3.02
331 332 4.819088 GGAGAACTTGTTCTTTTCTGCTCT 59.181 41.667 15.94 0.00 35.47 4.09
352 353 6.662865 TCTCACTTTCTCTCTCTTGTGAAT 57.337 37.500 0.00 0.00 34.64 2.57
365 366 5.528690 TCTCTTGTGAATCAACCTTCTTGTG 59.471 40.000 0.00 0.00 32.18 3.33
433 435 8.870160 TTGTTTCTTCATTGTTGGAGTATTTG 57.130 30.769 0.00 0.00 29.70 2.32
435 437 8.859090 TGTTTCTTCATTGTTGGAGTATTTGAT 58.141 29.630 0.00 0.00 29.70 2.57
510 518 3.560068 CACTGGAACACTGTTCAGGTAAC 59.440 47.826 20.94 5.66 38.67 2.50
511 519 3.199071 ACTGGAACACTGTTCAGGTAACA 59.801 43.478 20.94 9.38 45.90 2.41
517 525 3.717842 TGTTCAGGTAACAGGCCAC 57.282 52.632 5.01 0.00 43.22 5.01
518 526 0.109723 TGTTCAGGTAACAGGCCACC 59.890 55.000 5.01 3.03 43.22 4.61
520 528 0.690762 TTCAGGTAACAGGCCACCTC 59.309 55.000 9.53 0.00 43.45 3.85
523 531 0.693049 AGGTAACAGGCCACCTCTTG 59.307 55.000 5.01 0.00 41.44 3.02
524 532 0.400594 GGTAACAGGCCACCTCTTGT 59.599 55.000 5.01 0.00 0.00 3.16
525 533 1.523758 GTAACAGGCCACCTCTTGTG 58.476 55.000 5.01 0.00 45.01 3.33
526 534 1.136828 TAACAGGCCACCTCTTGTGT 58.863 50.000 5.01 0.00 43.85 3.72
527 535 0.258774 AACAGGCCACCTCTTGTGTT 59.741 50.000 5.01 0.35 43.85 3.32
528 536 0.466189 ACAGGCCACCTCTTGTGTTG 60.466 55.000 5.01 0.00 43.85 3.33
529 537 0.466189 CAGGCCACCTCTTGTGTTGT 60.466 55.000 5.01 0.00 43.85 3.32
530 538 0.466189 AGGCCACCTCTTGTGTTGTG 60.466 55.000 5.01 0.00 43.85 3.33
531 539 0.751643 GGCCACCTCTTGTGTTGTGT 60.752 55.000 0.00 0.00 43.85 3.72
532 540 0.381801 GCCACCTCTTGTGTTGTGTG 59.618 55.000 0.00 0.00 43.85 3.82
533 541 1.024271 CCACCTCTTGTGTTGTGTGG 58.976 55.000 0.00 0.00 43.85 4.17
534 542 1.024271 CACCTCTTGTGTTGTGTGGG 58.976 55.000 0.00 0.00 40.26 4.61
535 543 0.106719 ACCTCTTGTGTTGTGTGGGG 60.107 55.000 0.00 0.00 0.00 4.96
536 544 1.455383 CCTCTTGTGTTGTGTGGGGC 61.455 60.000 0.00 0.00 0.00 5.80
537 545 1.785041 CTCTTGTGTTGTGTGGGGCG 61.785 60.000 0.00 0.00 0.00 6.13
538 546 2.830827 TTGTGTTGTGTGGGGCGG 60.831 61.111 0.00 0.00 0.00 6.13
539 547 3.345607 TTGTGTTGTGTGGGGCGGA 62.346 57.895 0.00 0.00 0.00 5.54
540 548 2.978010 GTGTTGTGTGGGGCGGAG 60.978 66.667 0.00 0.00 0.00 4.63
541 549 3.484806 TGTTGTGTGGGGCGGAGT 61.485 61.111 0.00 0.00 0.00 3.85
542 550 2.203294 GTTGTGTGGGGCGGAGTT 60.203 61.111 0.00 0.00 0.00 3.01
545 553 0.535553 TTGTGTGGGGCGGAGTTTAC 60.536 55.000 0.00 0.00 0.00 2.01
546 554 1.673337 GTGTGGGGCGGAGTTTACC 60.673 63.158 0.00 0.00 0.00 2.85
547 555 2.148052 TGTGGGGCGGAGTTTACCA 61.148 57.895 0.00 0.00 0.00 3.25
549 557 1.029947 GTGGGGCGGAGTTTACCATG 61.030 60.000 0.00 0.00 33.19 3.66
550 558 1.453197 GGGGCGGAGTTTACCATGG 60.453 63.158 11.19 11.19 0.00 3.66
551 559 2.119029 GGGCGGAGTTTACCATGGC 61.119 63.158 13.04 0.00 0.00 4.40
554 562 0.663153 GCGGAGTTTACCATGGCATC 59.337 55.000 13.04 2.63 0.00 3.91
555 563 1.308998 CGGAGTTTACCATGGCATCC 58.691 55.000 13.04 11.08 0.00 3.51
556 564 1.134098 CGGAGTTTACCATGGCATCCT 60.134 52.381 13.04 2.63 0.00 3.24
558 566 3.477530 GGAGTTTACCATGGCATCCTAC 58.522 50.000 13.04 0.00 0.00 3.18
560 568 4.347000 GGAGTTTACCATGGCATCCTACTA 59.653 45.833 13.04 0.00 0.00 1.82
562 570 6.321821 AGTTTACCATGGCATCCTACTAAA 57.678 37.500 13.04 3.73 0.00 1.85
563 571 6.911308 AGTTTACCATGGCATCCTACTAAAT 58.089 36.000 13.04 0.00 0.00 1.40
564 572 8.041143 AGTTTACCATGGCATCCTACTAAATA 57.959 34.615 13.04 0.00 0.00 1.40
565 573 8.669571 AGTTTACCATGGCATCCTACTAAATAT 58.330 33.333 13.04 0.00 0.00 1.28
566 574 8.947115 GTTTACCATGGCATCCTACTAAATATC 58.053 37.037 13.04 0.00 0.00 1.63
567 575 6.702449 ACCATGGCATCCTACTAAATATCA 57.298 37.500 13.04 0.00 0.00 2.15
569 577 7.702785 ACCATGGCATCCTACTAAATATCAAT 58.297 34.615 13.04 0.00 0.00 2.57
570 578 7.613022 ACCATGGCATCCTACTAAATATCAATG 59.387 37.037 13.04 0.00 0.00 2.82
571 579 7.830697 CCATGGCATCCTACTAAATATCAATGA 59.169 37.037 0.00 0.00 0.00 2.57
572 580 8.890718 CATGGCATCCTACTAAATATCAATGAG 58.109 37.037 0.00 0.00 0.00 2.90
573 581 7.977818 TGGCATCCTACTAAATATCAATGAGT 58.022 34.615 0.00 0.00 0.00 3.41
575 583 8.940952 GGCATCCTACTAAATATCAATGAGTTC 58.059 37.037 0.00 0.00 0.00 3.01
577 585 9.442047 CATCCTACTAAATATCAATGAGTTCCC 57.558 37.037 0.00 0.00 0.00 3.97
578 586 7.667557 TCCTACTAAATATCAATGAGTTCCCG 58.332 38.462 0.00 0.00 0.00 5.14
579 587 7.507956 TCCTACTAAATATCAATGAGTTCCCGA 59.492 37.037 0.00 0.00 0.00 5.14
582 590 8.801882 ACTAAATATCAATGAGTTCCCGAAAA 57.198 30.769 0.00 0.00 0.00 2.29
583 591 9.238368 ACTAAATATCAATGAGTTCCCGAAAAA 57.762 29.630 0.00 0.00 0.00 1.94
584 592 9.503427 CTAAATATCAATGAGTTCCCGAAAAAC 57.497 33.333 0.00 0.00 0.00 2.43
587 595 8.801882 ATATCAATGAGTTCCCGAAAAACTAA 57.198 30.769 0.00 0.00 37.10 2.24
588 596 7.703058 ATCAATGAGTTCCCGAAAAACTAAT 57.297 32.000 0.00 0.00 37.10 1.73
589 597 7.141100 TCAATGAGTTCCCGAAAAACTAATC 57.859 36.000 0.00 0.00 37.10 1.75
590 598 6.940298 TCAATGAGTTCCCGAAAAACTAATCT 59.060 34.615 0.00 0.00 37.10 2.40
593 601 6.292923 TGAGTTCCCGAAAAACTAATCTCAA 58.707 36.000 0.00 0.00 37.10 3.02
594 602 6.426937 TGAGTTCCCGAAAAACTAATCTCAAG 59.573 38.462 0.00 0.00 37.10 3.02
595 603 5.181433 AGTTCCCGAAAAACTAATCTCAAGC 59.819 40.000 0.00 0.00 35.25 4.01
597 605 5.253330 TCCCGAAAAACTAATCTCAAGCAT 58.747 37.500 0.00 0.00 0.00 3.79
598 606 5.123820 TCCCGAAAAACTAATCTCAAGCATG 59.876 40.000 0.00 0.00 0.00 4.06
609 617 2.357075 CTCAAGCATGAGCATGTGAGT 58.643 47.619 16.74 0.00 46.11 3.41
611 619 2.486592 TCAAGCATGAGCATGTGAGTTG 59.513 45.455 11.68 10.09 45.49 3.16
612 620 1.460504 AGCATGAGCATGTGAGTTGG 58.539 50.000 11.68 0.00 45.49 3.77
613 621 1.003928 AGCATGAGCATGTGAGTTGGA 59.996 47.619 11.68 0.00 45.49 3.53
614 622 1.131883 GCATGAGCATGTGAGTTGGAC 59.868 52.381 11.68 0.00 40.80 4.02
616 624 3.865446 CATGAGCATGTGAGTTGGACTA 58.135 45.455 2.34 0.00 34.23 2.59
617 625 3.319137 TGAGCATGTGAGTTGGACTAC 57.681 47.619 0.00 0.00 0.00 2.73
619 627 1.279271 AGCATGTGAGTTGGACTACCC 59.721 52.381 0.00 0.00 34.81 3.69
620 628 2.007049 GCATGTGAGTTGGACTACCCG 61.007 57.143 0.00 0.00 37.93 5.28
622 630 2.291209 TGTGAGTTGGACTACCCGTA 57.709 50.000 0.00 0.00 37.93 4.02
623 631 1.888512 TGTGAGTTGGACTACCCGTAC 59.111 52.381 0.00 0.00 37.93 3.67
625 633 2.494870 GTGAGTTGGACTACCCGTACAT 59.505 50.000 0.00 0.00 36.05 2.29
627 635 4.158394 GTGAGTTGGACTACCCGTACATAA 59.842 45.833 0.00 0.00 36.05 1.90
628 636 4.957954 TGAGTTGGACTACCCGTACATAAT 59.042 41.667 0.00 0.00 36.05 1.28
632 640 5.437289 TGGACTACCCGTACATAATTACG 57.563 43.478 0.00 0.00 43.68 3.18
634 642 5.769662 TGGACTACCCGTACATAATTACGAT 59.230 40.000 4.30 0.00 46.37 3.73
635 643 6.939730 TGGACTACCCGTACATAATTACGATA 59.060 38.462 4.30 0.00 46.37 2.92
636 644 7.119699 TGGACTACCCGTACATAATTACGATAG 59.880 40.741 4.30 7.89 46.37 2.08
637 645 7.383102 ACTACCCGTACATAATTACGATAGG 57.617 40.000 4.30 0.54 46.37 2.57
638 646 5.064441 ACCCGTACATAATTACGATAGGC 57.936 43.478 4.30 0.00 46.37 3.93
639 647 4.082026 ACCCGTACATAATTACGATAGGCC 60.082 45.833 0.00 0.00 46.37 5.19
641 649 5.338365 CCGTACATAATTACGATAGGCCTC 58.662 45.833 9.68 0.00 46.37 4.70
647 930 7.913789 ACATAATTACGATAGGCCTCCATTAA 58.086 34.615 9.68 3.69 43.77 1.40
659 942 4.222810 GGCCTCCATTAATTTTTCACCAGT 59.777 41.667 0.00 0.00 0.00 4.00
660 943 5.279960 GGCCTCCATTAATTTTTCACCAGTT 60.280 40.000 0.00 0.00 0.00 3.16
661 944 6.230472 GCCTCCATTAATTTTTCACCAGTTT 58.770 36.000 0.00 0.00 0.00 2.66
665 948 5.997129 CCATTAATTTTTCACCAGTTTGCCT 59.003 36.000 0.00 0.00 0.00 4.75
904 1193 3.756082 ATTGGGAGAGGCAAATAACCA 57.244 42.857 0.00 0.00 0.00 3.67
960 1251 5.192927 AGAAACATCTCAAACAACACCTCA 58.807 37.500 0.00 0.00 0.00 3.86
1039 1332 2.555448 GCCCTCTTCTTTGCCCTAAACT 60.555 50.000 0.00 0.00 0.00 2.66
1106 1399 2.763902 GCCTTTGGTGCCTACCCT 59.236 61.111 0.00 0.00 46.96 4.34
1118 1411 1.003233 GCCTACCCTAGTTGTTGCACT 59.997 52.381 0.00 0.00 0.00 4.40
1149 1442 1.006813 ATGGTGGTTCCTGCCCAATA 58.993 50.000 0.00 0.00 37.07 1.90
1215 1508 2.264480 CTCCGGATCAACGTGCCA 59.736 61.111 3.57 0.00 0.00 4.92
1276 1569 4.695993 TTGATGCCGCCGTCTGCA 62.696 61.111 0.00 0.00 41.33 4.41
1344 1637 1.252904 TTCCCGTCGACCTTACCCTG 61.253 60.000 10.58 0.00 0.00 4.45
1421 1714 4.587684 AGTTATGACCAACTATACCTCCCG 59.412 45.833 0.00 0.00 36.99 5.14
1435 1728 4.138487 ACCTCCCGAAAACATACTCATC 57.862 45.455 0.00 0.00 0.00 2.92
1438 1731 4.752101 CCTCCCGAAAACATACTCATCATC 59.248 45.833 0.00 0.00 0.00 2.92
1597 1899 7.951591 TGGATCTCGTGTCATTGAAGATATTA 58.048 34.615 0.00 0.00 0.00 0.98
1744 2060 4.610333 TGCTCTTACTAGGAACCATCTGA 58.390 43.478 0.00 0.00 0.00 3.27
1771 2089 7.498900 TGGTAGTCATTCATCATATGGTTCAAC 59.501 37.037 2.13 0.00 0.00 3.18
1778 2096 9.244799 CATTCATCATATGGTTCAACAGATTTG 57.755 33.333 2.13 0.00 0.00 2.32
1779 2097 7.943079 TCATCATATGGTTCAACAGATTTGT 57.057 32.000 2.13 0.00 39.87 2.83
1802 2120 7.693952 TGTTTTGTTCTCAACTAGATGTGTTC 58.306 34.615 0.00 0.00 33.05 3.18
1806 2124 8.450578 TTGTTCTCAACTAGATGTGTTCATTT 57.549 30.769 0.00 0.00 34.06 2.32
1847 2165 3.960755 ACCCTGCCATTAATTTTCCTAGC 59.039 43.478 0.00 0.00 0.00 3.42
1848 2166 3.004734 CCCTGCCATTAATTTTCCTAGCG 59.995 47.826 0.00 0.00 0.00 4.26
1849 2167 3.632145 CCTGCCATTAATTTTCCTAGCGT 59.368 43.478 0.00 0.00 0.00 5.07
1891 2209 5.719173 GCTATTGGCTACTCTTAGGATGAG 58.281 45.833 0.00 0.00 38.06 2.90
1893 2211 5.543507 ATTGGCTACTCTTAGGATGAGTG 57.456 43.478 6.65 0.00 43.66 3.51
1895 2213 3.301274 GGCTACTCTTAGGATGAGTGGT 58.699 50.000 6.65 0.00 43.66 4.16
1896 2214 3.707102 GGCTACTCTTAGGATGAGTGGTT 59.293 47.826 6.65 0.00 43.66 3.67
1897 2215 4.442192 GGCTACTCTTAGGATGAGTGGTTG 60.442 50.000 6.65 0.00 43.66 3.77
1899 2217 4.810191 ACTCTTAGGATGAGTGGTTGTC 57.190 45.455 0.00 0.00 42.46 3.18
1902 2220 3.515502 TCTTAGGATGAGTGGTTGTCCTG 59.484 47.826 3.15 0.00 41.08 3.86
1903 2221 1.734655 AGGATGAGTGGTTGTCCTGT 58.265 50.000 0.00 0.00 39.54 4.00
1904 2222 2.902608 AGGATGAGTGGTTGTCCTGTA 58.097 47.619 0.00 0.00 39.54 2.74
1906 2224 3.261897 AGGATGAGTGGTTGTCCTGTAAG 59.738 47.826 0.00 0.00 39.54 2.34
1908 2226 2.047061 TGAGTGGTTGTCCTGTAAGCT 58.953 47.619 0.00 0.00 34.23 3.74
1909 2227 2.224281 TGAGTGGTTGTCCTGTAAGCTG 60.224 50.000 0.00 0.00 34.23 4.24
1911 2229 2.639839 AGTGGTTGTCCTGTAAGCTGAT 59.360 45.455 0.00 0.00 34.23 2.90
1912 2230 3.003480 GTGGTTGTCCTGTAAGCTGATC 58.997 50.000 0.00 0.00 34.23 2.92
1914 2232 3.072330 TGGTTGTCCTGTAAGCTGATCAA 59.928 43.478 0.00 0.00 34.23 2.57
1915 2233 3.437049 GGTTGTCCTGTAAGCTGATCAAC 59.563 47.826 0.00 0.00 34.95 3.18
1916 2234 3.334583 TGTCCTGTAAGCTGATCAACC 57.665 47.619 0.00 0.00 0.00 3.77
1917 2235 2.906389 TGTCCTGTAAGCTGATCAACCT 59.094 45.455 0.00 0.00 0.00 3.50
1918 2236 3.055819 TGTCCTGTAAGCTGATCAACCTC 60.056 47.826 0.00 0.00 0.00 3.85
1919 2237 3.196685 GTCCTGTAAGCTGATCAACCTCT 59.803 47.826 0.00 0.00 0.00 3.69
1920 2238 3.840666 TCCTGTAAGCTGATCAACCTCTT 59.159 43.478 0.00 1.07 0.00 2.85
1921 2239 3.937706 CCTGTAAGCTGATCAACCTCTTG 59.062 47.826 0.00 0.00 0.00 3.02
1923 2241 4.318332 TGTAAGCTGATCAACCTCTTGTG 58.682 43.478 0.00 0.00 0.00 3.33
1924 2242 3.777106 AAGCTGATCAACCTCTTGTGA 57.223 42.857 0.00 0.00 0.00 3.58
1925 2243 3.331478 AGCTGATCAACCTCTTGTGAG 57.669 47.619 0.00 0.00 39.92 3.51
1926 2244 2.636893 AGCTGATCAACCTCTTGTGAGT 59.363 45.455 0.00 0.00 38.61 3.41
1927 2245 2.999355 GCTGATCAACCTCTTGTGAGTC 59.001 50.000 0.00 0.00 38.61 3.36
1930 2248 1.801242 TCAACCTCTTGTGAGTCCCA 58.199 50.000 0.00 0.00 38.61 4.37
1931 2249 1.416401 TCAACCTCTTGTGAGTCCCAC 59.584 52.381 0.00 0.00 45.88 4.61
1932 2250 1.417890 CAACCTCTTGTGAGTCCCACT 59.582 52.381 0.00 0.00 45.86 4.00
1933 2251 1.807814 ACCTCTTGTGAGTCCCACTT 58.192 50.000 0.00 0.00 45.86 3.16
1934 2252 1.417890 ACCTCTTGTGAGTCCCACTTG 59.582 52.381 0.00 0.00 45.86 3.16
1935 2253 1.417890 CCTCTTGTGAGTCCCACTTGT 59.582 52.381 0.00 0.00 45.86 3.16
1939 2257 3.709653 TCTTGTGAGTCCCACTTGTAAGT 59.290 43.478 0.00 0.00 45.86 2.24
1940 2258 6.250913 CTCTTGTGAGTCCCACTTGTAAGTG 61.251 48.000 15.95 15.95 45.86 3.16
1942 2260 9.569086 CTCTTGTGAGTCCCACTTGTAAGTGAT 62.569 44.444 22.66 8.38 44.99 3.06
1969 4021 3.255725 GAACAATGATGTGGCCATGTTG 58.744 45.455 21.67 17.14 40.46 3.33
1970 4022 1.066716 ACAATGATGTGGCCATGTTGC 60.067 47.619 9.72 0.00 38.69 4.17
1977 4029 3.287445 GGCCATGTTGCCGATGTT 58.713 55.556 0.00 0.00 42.54 2.71
1979 4031 1.594194 GGCCATGTTGCCGATGTTGA 61.594 55.000 0.00 0.00 42.54 3.18
1980 4032 0.457035 GCCATGTTGCCGATGTTGAT 59.543 50.000 0.00 0.00 0.00 2.57
1981 4033 1.675483 GCCATGTTGCCGATGTTGATA 59.325 47.619 0.00 0.00 0.00 2.15
1982 4034 2.294233 GCCATGTTGCCGATGTTGATAT 59.706 45.455 0.00 0.00 0.00 1.63
1983 4035 3.854414 GCCATGTTGCCGATGTTGATATG 60.854 47.826 0.00 0.00 0.00 1.78
1984 4036 3.302555 CATGTTGCCGATGTTGATATGC 58.697 45.455 0.00 0.00 0.00 3.14
1985 4037 2.642427 TGTTGCCGATGTTGATATGCT 58.358 42.857 0.00 0.00 0.00 3.79
1986 4038 2.355444 TGTTGCCGATGTTGATATGCTG 59.645 45.455 0.00 0.00 0.00 4.41
1987 4039 0.946528 TGCCGATGTTGATATGCTGC 59.053 50.000 0.00 0.00 0.00 5.25
1988 4040 0.946528 GCCGATGTTGATATGCTGCA 59.053 50.000 4.13 4.13 0.00 4.41
1990 4042 2.667448 GCCGATGTTGATATGCTGCATG 60.667 50.000 24.59 5.24 0.00 4.06
1991 4043 2.551032 CCGATGTTGATATGCTGCATGT 59.449 45.455 24.59 18.53 0.00 3.21
1992 4044 3.364664 CCGATGTTGATATGCTGCATGTC 60.365 47.826 26.41 26.41 33.56 3.06
2003 4359 7.664318 TGATATGCTGCATGTCAAGAGAAATAT 59.336 33.333 31.31 11.55 38.62 1.28
2004 4360 6.710597 ATGCTGCATGTCAAGAGAAATATT 57.289 33.333 15.44 0.00 0.00 1.28
2011 4367 9.276590 TGCATGTCAAGAGAAATATTATAGTGG 57.723 33.333 0.00 0.00 0.00 4.00
2012 4368 8.725148 GCATGTCAAGAGAAATATTATAGTGGG 58.275 37.037 0.00 0.00 0.00 4.61
2013 4369 9.224267 CATGTCAAGAGAAATATTATAGTGGGG 57.776 37.037 0.00 0.00 0.00 4.96
2015 4371 9.170890 TGTCAAGAGAAATATTATAGTGGGGAT 57.829 33.333 0.00 0.00 0.00 3.85
2016 4372 9.442047 GTCAAGAGAAATATTATAGTGGGGATG 57.558 37.037 0.00 0.00 0.00 3.51
2019 4375 8.152023 AGAGAAATATTATAGTGGGGATGGAC 57.848 38.462 0.00 0.00 0.00 4.02
2028 4565 4.022359 AGTGGGGATGGACTATTTAGGT 57.978 45.455 0.00 0.00 0.00 3.08
2031 4568 6.158260 AGTGGGGATGGACTATTTAGGTATT 58.842 40.000 0.00 0.00 0.00 1.89
2032 4569 7.318401 AGTGGGGATGGACTATTTAGGTATTA 58.682 38.462 0.00 0.00 0.00 0.98
2034 4571 9.275572 GTGGGGATGGACTATTTAGGTATTATA 57.724 37.037 0.00 0.00 0.00 0.98
2035 4572 9.502035 TGGGGATGGACTATTTAGGTATTATAG 57.498 37.037 0.00 0.00 0.00 1.31
2315 4858 9.798885 CACATAAAGTACGAGAGAAAAAGAAAG 57.201 33.333 0.00 0.00 0.00 2.62
2316 4859 9.760077 ACATAAAGTACGAGAGAAAAAGAAAGA 57.240 29.630 0.00 0.00 0.00 2.52
2330 4873 9.516314 AGAAAAAGAAAGAAAAATAGTGGTTCG 57.484 29.630 0.00 0.00 0.00 3.95
2333 4876 4.217767 AGAAAGAAAAATAGTGGTTCGGGC 59.782 41.667 0.00 0.00 0.00 6.13
2335 4878 3.081804 AGAAAAATAGTGGTTCGGGCAG 58.918 45.455 0.00 0.00 0.00 4.85
2341 4884 3.961414 TGGTTCGGGCAGGGTTCC 61.961 66.667 0.00 0.00 0.00 3.62
2345 4888 2.890766 TTCGGGCAGGGTTCCACTC 61.891 63.158 0.00 0.00 0.00 3.51
2349 4892 1.003233 GGCAGGGTTCCACTCACTC 60.003 63.158 0.00 0.00 0.00 3.51
2350 4893 1.003233 GCAGGGTTCCACTCACTCC 60.003 63.158 0.00 0.00 0.00 3.85
2351 4894 1.768684 GCAGGGTTCCACTCACTCCA 61.769 60.000 0.00 0.00 0.00 3.86
2352 4895 0.764890 CAGGGTTCCACTCACTCCAA 59.235 55.000 0.00 0.00 0.00 3.53
2353 4896 1.352352 CAGGGTTCCACTCACTCCAAT 59.648 52.381 0.00 0.00 0.00 3.16
2355 4898 2.040412 AGGGTTCCACTCACTCCAATTC 59.960 50.000 0.00 0.00 0.00 2.17
2379 5934 9.496873 TTCATAATATAGGACGTTATTGTTGGG 57.503 33.333 0.00 0.00 0.00 4.12
2380 5935 8.098286 TCATAATATAGGACGTTATTGTTGGGG 58.902 37.037 0.00 0.00 0.00 4.96
2381 5936 6.503560 AATATAGGACGTTATTGTTGGGGA 57.496 37.500 0.00 0.00 0.00 4.81
2382 5937 4.847990 ATAGGACGTTATTGTTGGGGAA 57.152 40.909 0.00 0.00 0.00 3.97
2383 5938 2.786777 AGGACGTTATTGTTGGGGAAC 58.213 47.619 0.00 0.00 0.00 3.62
2388 5943 2.094734 CGTTATTGTTGGGGAACGTAGC 59.905 50.000 0.00 0.00 39.74 3.58
2389 5944 3.075884 GTTATTGTTGGGGAACGTAGCA 58.924 45.455 0.00 0.00 0.00 3.49
2390 5945 2.279935 ATTGTTGGGGAACGTAGCAA 57.720 45.000 0.00 0.00 0.00 3.91
2392 5947 3.420300 TTGTTGGGGAACGTAGCAATA 57.580 42.857 0.00 0.00 0.00 1.90
2393 5948 3.420300 TGTTGGGGAACGTAGCAATAA 57.580 42.857 0.00 0.00 0.00 1.40
2394 5949 3.958018 TGTTGGGGAACGTAGCAATAAT 58.042 40.909 0.00 0.00 0.00 1.28
2395 5950 4.337145 TGTTGGGGAACGTAGCAATAATT 58.663 39.130 0.00 0.00 0.00 1.40
2396 5951 4.396790 TGTTGGGGAACGTAGCAATAATTC 59.603 41.667 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.520021 AATGGGATCACATCATTAGGAGAA 57.480 37.500 11.76 0.00 30.35 2.87
1 2 7.631510 TTAATGGGATCACATCATTAGGAGA 57.368 36.000 11.76 0.00 35.59 3.71
2 3 8.105197 TGATTAATGGGATCACATCATTAGGAG 58.895 37.037 11.76 0.00 35.59 3.69
3 4 7.987820 TGATTAATGGGATCACATCATTAGGA 58.012 34.615 11.76 0.00 35.59 2.94
4 5 8.640063 TTGATTAATGGGATCACATCATTAGG 57.360 34.615 11.76 0.00 35.59 2.69
7 8 9.150028 TCATTTGATTAATGGGATCACATCATT 57.850 29.630 11.76 9.08 43.19 2.57
8 9 8.582437 GTCATTTGATTAATGGGATCACATCAT 58.418 33.333 11.76 6.60 43.19 2.45
9 10 7.560626 TGTCATTTGATTAATGGGATCACATCA 59.439 33.333 11.76 2.49 43.19 3.07
10 11 7.944061 TGTCATTTGATTAATGGGATCACATC 58.056 34.615 11.76 0.00 43.19 3.06
11 12 7.901283 TGTCATTTGATTAATGGGATCACAT 57.099 32.000 4.06 4.06 43.19 3.21
12 13 7.396907 AGTTGTCATTTGATTAATGGGATCACA 59.603 33.333 0.00 0.00 43.19 3.58
13 14 7.775120 AGTTGTCATTTGATTAATGGGATCAC 58.225 34.615 0.00 0.00 43.19 3.06
14 15 7.835682 AGAGTTGTCATTTGATTAATGGGATCA 59.164 33.333 0.00 0.00 43.19 2.92
15 16 8.230472 AGAGTTGTCATTTGATTAATGGGATC 57.770 34.615 0.00 0.00 43.19 3.36
16 17 8.599624 AAGAGTTGTCATTTGATTAATGGGAT 57.400 30.769 0.00 0.00 43.19 3.85
17 18 8.306038 CAAAGAGTTGTCATTTGATTAATGGGA 58.694 33.333 0.00 0.00 43.19 4.37
18 19 8.090214 ACAAAGAGTTGTCATTTGATTAATGGG 58.910 33.333 0.00 0.00 45.00 4.00
34 35 5.344743 TCCTAGCCATAGACAAAGAGTTG 57.655 43.478 0.00 0.00 40.84 3.16
35 36 6.174049 GTTTCCTAGCCATAGACAAAGAGTT 58.826 40.000 0.00 0.00 0.00 3.01
36 37 5.248477 TGTTTCCTAGCCATAGACAAAGAGT 59.752 40.000 0.00 0.00 0.00 3.24
37 38 5.734720 TGTTTCCTAGCCATAGACAAAGAG 58.265 41.667 0.00 0.00 0.00 2.85
38 39 5.755409 TGTTTCCTAGCCATAGACAAAGA 57.245 39.130 0.00 0.00 0.00 2.52
39 40 7.012421 GGTTATGTTTCCTAGCCATAGACAAAG 59.988 40.741 0.00 0.00 0.00 2.77
40 41 6.826741 GGTTATGTTTCCTAGCCATAGACAAA 59.173 38.462 0.00 0.00 0.00 2.83
41 42 6.069905 TGGTTATGTTTCCTAGCCATAGACAA 60.070 38.462 0.00 0.00 0.00 3.18
42 43 5.427157 TGGTTATGTTTCCTAGCCATAGACA 59.573 40.000 0.00 0.00 0.00 3.41
43 44 5.925509 TGGTTATGTTTCCTAGCCATAGAC 58.074 41.667 0.00 0.00 0.00 2.59
44 45 6.558775 AGATGGTTATGTTTCCTAGCCATAGA 59.441 38.462 0.00 0.00 39.44 1.98
45 46 6.773638 AGATGGTTATGTTTCCTAGCCATAG 58.226 40.000 0.00 0.00 39.44 2.23
46 47 6.763715 AGATGGTTATGTTTCCTAGCCATA 57.236 37.500 0.00 0.00 39.44 2.74
47 48 5.653255 AGATGGTTATGTTTCCTAGCCAT 57.347 39.130 0.00 0.00 41.28 4.40
48 49 5.450818 AAGATGGTTATGTTTCCTAGCCA 57.549 39.130 0.00 0.00 34.50 4.75
49 50 5.885912 TCAAAGATGGTTATGTTTCCTAGCC 59.114 40.000 0.00 0.00 28.23 3.93
50 51 7.283127 TGATCAAAGATGGTTATGTTTCCTAGC 59.717 37.037 0.00 0.00 28.23 3.42
51 52 8.737168 TGATCAAAGATGGTTATGTTTCCTAG 57.263 34.615 0.00 0.00 28.23 3.02
52 53 9.699410 ATTGATCAAAGATGGTTATGTTTCCTA 57.301 29.630 13.09 0.00 28.23 2.94
53 54 8.472413 CATTGATCAAAGATGGTTATGTTTCCT 58.528 33.333 13.09 0.00 28.23 3.36
54 55 8.469200 TCATTGATCAAAGATGGTTATGTTTCC 58.531 33.333 13.09 0.00 28.23 3.13
55 56 9.512435 CTCATTGATCAAAGATGGTTATGTTTC 57.488 33.333 13.09 0.00 28.23 2.78
56 57 7.977853 GCTCATTGATCAAAGATGGTTATGTTT 59.022 33.333 13.09 0.00 30.61 2.83
57 58 7.341256 AGCTCATTGATCAAAGATGGTTATGTT 59.659 33.333 13.09 0.00 0.00 2.71
58 59 6.832384 AGCTCATTGATCAAAGATGGTTATGT 59.168 34.615 13.09 0.00 0.00 2.29
59 60 7.273320 AGCTCATTGATCAAAGATGGTTATG 57.727 36.000 13.09 2.91 0.00 1.90
60 61 8.216423 AGTAGCTCATTGATCAAAGATGGTTAT 58.784 33.333 13.09 3.62 0.00 1.89
61 62 7.568349 AGTAGCTCATTGATCAAAGATGGTTA 58.432 34.615 13.09 2.70 0.00 2.85
62 63 6.421485 AGTAGCTCATTGATCAAAGATGGTT 58.579 36.000 13.09 3.64 0.00 3.67
63 64 5.999044 AGTAGCTCATTGATCAAAGATGGT 58.001 37.500 13.09 14.05 0.00 3.55
64 65 6.053650 TGAGTAGCTCATTGATCAAAGATGG 58.946 40.000 13.09 4.01 35.39 3.51
65 66 7.280428 ACTTGAGTAGCTCATTGATCAAAGATG 59.720 37.037 13.09 6.71 40.39 2.90
66 67 7.337167 ACTTGAGTAGCTCATTGATCAAAGAT 58.663 34.615 13.09 7.68 40.39 2.40
67 68 6.705302 ACTTGAGTAGCTCATTGATCAAAGA 58.295 36.000 13.09 12.74 40.39 2.52
68 69 6.981762 ACTTGAGTAGCTCATTGATCAAAG 57.018 37.500 13.09 8.43 40.39 2.77
69 70 7.840931 TCTACTTGAGTAGCTCATTGATCAAA 58.159 34.615 13.09 0.00 45.69 2.69
70 71 7.410120 TCTACTTGAGTAGCTCATTGATCAA 57.590 36.000 11.26 11.26 45.69 2.57
71 72 6.040278 CCTCTACTTGAGTAGCTCATTGATCA 59.960 42.308 12.30 0.00 45.69 2.92
72 73 6.446318 CCTCTACTTGAGTAGCTCATTGATC 58.554 44.000 12.30 0.00 45.69 2.92
73 74 5.221422 GCCTCTACTTGAGTAGCTCATTGAT 60.221 44.000 12.30 0.00 45.69 2.57
74 75 4.098654 GCCTCTACTTGAGTAGCTCATTGA 59.901 45.833 12.30 0.00 45.69 2.57
75 76 4.142071 TGCCTCTACTTGAGTAGCTCATTG 60.142 45.833 12.30 0.03 45.69 2.82
76 77 4.026744 TGCCTCTACTTGAGTAGCTCATT 58.973 43.478 12.30 0.00 45.69 2.57
77 78 3.636679 TGCCTCTACTTGAGTAGCTCAT 58.363 45.455 12.30 0.00 45.69 2.90
78 79 3.087370 TGCCTCTACTTGAGTAGCTCA 57.913 47.619 12.30 7.65 45.69 4.26
79 80 4.825085 AGTATGCCTCTACTTGAGTAGCTC 59.175 45.833 12.30 5.61 45.69 4.09
80 81 4.798882 AGTATGCCTCTACTTGAGTAGCT 58.201 43.478 12.30 0.00 45.69 3.32
81 82 5.766174 ACTAGTATGCCTCTACTTGAGTAGC 59.234 44.000 12.30 4.13 45.69 3.58
83 84 6.766944 GTCACTAGTATGCCTCTACTTGAGTA 59.233 42.308 0.00 0.00 41.11 2.59
84 85 5.591067 GTCACTAGTATGCCTCTACTTGAGT 59.409 44.000 0.00 0.00 41.11 3.41
85 86 5.590663 TGTCACTAGTATGCCTCTACTTGAG 59.409 44.000 0.00 0.00 42.30 3.02
86 87 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
87 88 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
88 89 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
89 90 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
90 91 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
91 92 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
92 93 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
93 94 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
94 95 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
95 96 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
96 97 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
97 98 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
98 99 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
99 100 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
100 101 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
101 102 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
102 103 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
103 104 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
104 105 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
105 106 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
106 107 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
107 108 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
108 109 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
109 110 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
110 111 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
111 112 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
112 113 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
113 114 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
115 116 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
117 118 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
118 119 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
122 123 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
123 124 7.609532 TGGAAACATGATACATGTGTGAATACA 59.390 33.333 16.29 0.00 33.40 2.29
124 125 7.984391 TGGAAACATGATACATGTGTGAATAC 58.016 34.615 16.29 1.40 33.40 1.89
125 126 7.828717 ACTGGAAACATGATACATGTGTGAATA 59.171 33.333 16.29 0.00 41.51 1.75
126 127 6.660521 ACTGGAAACATGATACATGTGTGAAT 59.339 34.615 16.29 0.00 41.51 2.57
127 128 6.003326 ACTGGAAACATGATACATGTGTGAA 58.997 36.000 16.29 0.00 41.51 3.18
128 129 5.559770 ACTGGAAACATGATACATGTGTGA 58.440 37.500 16.29 0.00 41.51 3.58
129 130 5.885230 ACTGGAAACATGATACATGTGTG 57.115 39.130 16.29 4.81 41.51 3.82
130 131 7.994425 TTAACTGGAAACATGATACATGTGT 57.006 32.000 16.29 11.88 41.51 3.72
131 132 9.935682 GTATTAACTGGAAACATGATACATGTG 57.064 33.333 16.29 7.59 41.51 3.21
132 133 9.679661 TGTATTAACTGGAAACATGATACATGT 57.320 29.630 10.94 10.94 41.51 3.21
140 141 9.722056 GCTAGAATTGTATTAACTGGAAACATG 57.278 33.333 0.00 0.00 41.51 3.21
141 142 9.461312 TGCTAGAATTGTATTAACTGGAAACAT 57.539 29.630 0.00 0.00 41.51 2.71
142 143 8.856153 TGCTAGAATTGTATTAACTGGAAACA 57.144 30.769 0.00 0.00 39.59 2.83
143 144 9.722056 CATGCTAGAATTGTATTAACTGGAAAC 57.278 33.333 0.00 0.00 0.00 2.78
144 145 9.679661 TCATGCTAGAATTGTATTAACTGGAAA 57.320 29.630 0.00 0.00 0.00 3.13
145 146 9.679661 TTCATGCTAGAATTGTATTAACTGGAA 57.320 29.630 0.00 0.00 0.00 3.53
146 147 9.851686 ATTCATGCTAGAATTGTATTAACTGGA 57.148 29.630 0.00 0.00 34.70 3.86
222 223 4.594920 TCTGAAGGAAATATGCCCTAGAGG 59.405 45.833 0.00 0.00 39.47 3.69
223 224 5.306678 ACTCTGAAGGAAATATGCCCTAGAG 59.693 44.000 15.35 15.35 39.48 2.43
224 225 5.070981 CACTCTGAAGGAAATATGCCCTAGA 59.929 44.000 0.00 0.00 31.36 2.43
225 226 5.303971 CACTCTGAAGGAAATATGCCCTAG 58.696 45.833 0.00 0.00 31.36 3.02
226 227 4.103153 CCACTCTGAAGGAAATATGCCCTA 59.897 45.833 0.00 0.00 31.36 3.53
227 228 3.117738 CCACTCTGAAGGAAATATGCCCT 60.118 47.826 0.00 0.00 0.00 5.19
228 229 3.117888 TCCACTCTGAAGGAAATATGCCC 60.118 47.826 0.00 0.00 0.00 5.36
229 230 3.879892 GTCCACTCTGAAGGAAATATGCC 59.120 47.826 0.57 0.00 35.29 4.40
230 231 4.775236 AGTCCACTCTGAAGGAAATATGC 58.225 43.478 0.57 0.00 35.29 3.14
231 232 5.982356 TGAGTCCACTCTGAAGGAAATATG 58.018 41.667 8.19 0.00 43.25 1.78
232 233 5.723887 ACTGAGTCCACTCTGAAGGAAATAT 59.276 40.000 17.68 0.00 42.37 1.28
233 234 5.047021 CACTGAGTCCACTCTGAAGGAAATA 60.047 44.000 17.68 0.00 42.37 1.40
234 235 3.906846 ACTGAGTCCACTCTGAAGGAAAT 59.093 43.478 17.68 0.00 42.37 2.17
235 236 3.070159 CACTGAGTCCACTCTGAAGGAAA 59.930 47.826 17.68 0.00 42.37 3.13
236 237 2.630098 CACTGAGTCCACTCTGAAGGAA 59.370 50.000 17.68 0.00 42.37 3.36
237 238 2.242926 CACTGAGTCCACTCTGAAGGA 58.757 52.381 17.68 0.00 42.37 3.36
238 239 1.337635 GCACTGAGTCCACTCTGAAGG 60.338 57.143 17.68 9.30 42.37 3.46
239 240 1.668337 CGCACTGAGTCCACTCTGAAG 60.668 57.143 17.68 11.46 42.37 3.02
240 241 0.315251 CGCACTGAGTCCACTCTGAA 59.685 55.000 17.68 0.00 42.37 3.02
241 242 0.823769 ACGCACTGAGTCCACTCTGA 60.824 55.000 17.68 0.00 42.37 3.27
242 243 0.881796 TACGCACTGAGTCCACTCTG 59.118 55.000 11.04 11.04 43.25 3.35
243 244 1.840737 ATACGCACTGAGTCCACTCT 58.159 50.000 8.19 0.00 43.25 3.24
254 255 6.167685 TCACACCTAACAAAATATACGCACT 58.832 36.000 0.00 0.00 0.00 4.40
256 257 6.167685 ACTCACACCTAACAAAATATACGCA 58.832 36.000 0.00 0.00 0.00 5.24
257 258 6.657836 ACTCACACCTAACAAAATATACGC 57.342 37.500 0.00 0.00 0.00 4.42
261 262 8.950210 CATCAGAACTCACACCTAACAAAATAT 58.050 33.333 0.00 0.00 0.00 1.28
263 264 6.207417 CCATCAGAACTCACACCTAACAAAAT 59.793 38.462 0.00 0.00 0.00 1.82
266 267 4.641396 CCATCAGAACTCACACCTAACAA 58.359 43.478 0.00 0.00 0.00 2.83
271 272 1.059098 TGCCATCAGAACTCACACCT 58.941 50.000 0.00 0.00 0.00 4.00
281 282 3.877559 CTGTTAGGACATTGCCATCAGA 58.122 45.455 0.00 0.00 34.72 3.27
282 283 2.357009 GCTGTTAGGACATTGCCATCAG 59.643 50.000 0.00 0.00 34.72 2.90
288 289 3.255642 TCCTTTTGCTGTTAGGACATTGC 59.744 43.478 0.00 0.00 34.72 3.56
293 294 4.390264 AGTTCTCCTTTTGCTGTTAGGAC 58.610 43.478 0.00 0.00 34.47 3.85
294 295 4.706842 AGTTCTCCTTTTGCTGTTAGGA 57.293 40.909 0.00 0.00 36.65 2.94
318 319 5.923204 AGAGAAAGTGAGAGCAGAAAAGAA 58.077 37.500 0.00 0.00 0.00 2.52
320 321 5.540911 AGAGAGAAAGTGAGAGCAGAAAAG 58.459 41.667 0.00 0.00 0.00 2.27
322 323 4.832266 AGAGAGAGAAAGTGAGAGCAGAAA 59.168 41.667 0.00 0.00 0.00 2.52
326 327 3.894427 ACAAGAGAGAGAAAGTGAGAGCA 59.106 43.478 0.00 0.00 0.00 4.26
327 328 4.022416 TCACAAGAGAGAGAAAGTGAGAGC 60.022 45.833 0.00 0.00 32.76 4.09
331 332 6.410942 TGATTCACAAGAGAGAGAAAGTGA 57.589 37.500 0.00 0.00 34.54 3.41
352 353 7.575414 TTTTTAGCATACACAAGAAGGTTGA 57.425 32.000 0.00 0.00 0.00 3.18
458 460 9.559732 CAATAAGACCATAGTGGATTGATGTTA 57.440 33.333 2.45 0.00 40.96 2.41
460 462 7.577303 ACAATAAGACCATAGTGGATTGATGT 58.423 34.615 12.39 8.82 40.96 3.06
461 463 9.559732 TTACAATAAGACCATAGTGGATTGATG 57.440 33.333 12.39 8.40 40.96 3.07
473 481 6.430000 GTGTTCCAGTGTTACAATAAGACCAT 59.570 38.462 0.00 0.00 0.00 3.55
517 525 1.455383 GCCCCACACAACACAAGAGG 61.455 60.000 0.00 0.00 0.00 3.69
518 526 1.785041 CGCCCCACACAACACAAGAG 61.785 60.000 0.00 0.00 0.00 2.85
520 528 2.721231 CGCCCCACACAACACAAG 59.279 61.111 0.00 0.00 0.00 3.16
523 531 2.978010 CTCCGCCCCACACAACAC 60.978 66.667 0.00 0.00 0.00 3.32
524 532 2.559922 AAACTCCGCCCCACACAACA 62.560 55.000 0.00 0.00 0.00 3.33
525 533 0.535553 TAAACTCCGCCCCACACAAC 60.536 55.000 0.00 0.00 0.00 3.32
526 534 0.535553 GTAAACTCCGCCCCACACAA 60.536 55.000 0.00 0.00 0.00 3.33
527 535 1.071814 GTAAACTCCGCCCCACACA 59.928 57.895 0.00 0.00 0.00 3.72
528 536 1.673337 GGTAAACTCCGCCCCACAC 60.673 63.158 0.00 0.00 0.00 3.82
529 537 1.493854 ATGGTAAACTCCGCCCCACA 61.494 55.000 0.00 0.00 0.00 4.17
530 538 1.029947 CATGGTAAACTCCGCCCCAC 61.030 60.000 0.00 0.00 0.00 4.61
531 539 1.301623 CATGGTAAACTCCGCCCCA 59.698 57.895 0.00 0.00 0.00 4.96
532 540 1.453197 CCATGGTAAACTCCGCCCC 60.453 63.158 2.57 0.00 0.00 5.80
533 541 2.119029 GCCATGGTAAACTCCGCCC 61.119 63.158 14.67 0.00 0.00 6.13
534 542 0.751643 ATGCCATGGTAAACTCCGCC 60.752 55.000 14.67 0.00 0.00 6.13
535 543 0.663153 GATGCCATGGTAAACTCCGC 59.337 55.000 14.67 0.00 0.00 5.54
536 544 1.134098 AGGATGCCATGGTAAACTCCG 60.134 52.381 14.67 0.00 0.00 4.63
537 545 2.736670 AGGATGCCATGGTAAACTCC 57.263 50.000 14.67 13.04 0.00 3.85
538 546 4.423625 AGTAGGATGCCATGGTAAACTC 57.576 45.455 14.67 3.31 0.00 3.01
539 547 5.968676 TTAGTAGGATGCCATGGTAAACT 57.031 39.130 14.67 13.57 0.00 2.66
540 548 8.863872 ATATTTAGTAGGATGCCATGGTAAAC 57.136 34.615 14.67 6.31 0.00 2.01
541 549 8.664992 TGATATTTAGTAGGATGCCATGGTAAA 58.335 33.333 14.67 7.90 0.00 2.01
542 550 8.213489 TGATATTTAGTAGGATGCCATGGTAA 57.787 34.615 14.67 2.23 0.00 2.85
545 553 7.830697 TCATTGATATTTAGTAGGATGCCATGG 59.169 37.037 7.63 7.63 0.00 3.66
546 554 8.797350 TCATTGATATTTAGTAGGATGCCATG 57.203 34.615 0.00 0.00 0.00 3.66
547 555 8.609483 ACTCATTGATATTTAGTAGGATGCCAT 58.391 33.333 0.00 0.00 0.00 4.40
549 557 8.854614 AACTCATTGATATTTAGTAGGATGCC 57.145 34.615 0.00 0.00 0.00 4.40
550 558 8.940952 GGAACTCATTGATATTTAGTAGGATGC 58.059 37.037 0.00 0.00 0.00 3.91
551 559 9.442047 GGGAACTCATTGATATTTAGTAGGATG 57.558 37.037 0.00 0.00 0.00 3.51
554 562 7.667557 TCGGGAACTCATTGATATTTAGTAGG 58.332 38.462 0.00 0.00 0.00 3.18
555 563 9.542462 TTTCGGGAACTCATTGATATTTAGTAG 57.458 33.333 0.00 0.00 0.00 2.57
556 564 9.893634 TTTTCGGGAACTCATTGATATTTAGTA 57.106 29.630 0.00 0.00 0.00 1.82
558 566 9.503427 GTTTTTCGGGAACTCATTGATATTTAG 57.497 33.333 0.00 0.00 0.00 1.85
560 568 8.122472 AGTTTTTCGGGAACTCATTGATATTT 57.878 30.769 0.00 0.00 32.04 1.40
562 570 8.801882 TTAGTTTTTCGGGAACTCATTGATAT 57.198 30.769 2.96 0.00 38.28 1.63
563 571 8.801882 ATTAGTTTTTCGGGAACTCATTGATA 57.198 30.769 2.96 0.00 38.28 2.15
564 572 7.611855 AGATTAGTTTTTCGGGAACTCATTGAT 59.388 33.333 2.96 0.00 38.28 2.57
565 573 6.940298 AGATTAGTTTTTCGGGAACTCATTGA 59.060 34.615 2.96 0.00 38.28 2.57
566 574 7.094805 TGAGATTAGTTTTTCGGGAACTCATTG 60.095 37.037 0.00 0.00 38.28 2.82
567 575 6.940298 TGAGATTAGTTTTTCGGGAACTCATT 59.060 34.615 0.00 0.00 38.28 2.57
569 577 5.860611 TGAGATTAGTTTTTCGGGAACTCA 58.139 37.500 0.00 0.00 38.28 3.41
570 578 6.620949 GCTTGAGATTAGTTTTTCGGGAACTC 60.621 42.308 2.96 0.00 38.28 3.01
571 579 5.181433 GCTTGAGATTAGTTTTTCGGGAACT 59.819 40.000 4.80 4.80 40.28 3.01
572 580 5.048991 TGCTTGAGATTAGTTTTTCGGGAAC 60.049 40.000 0.00 0.00 0.00 3.62
573 581 5.067273 TGCTTGAGATTAGTTTTTCGGGAA 58.933 37.500 0.00 0.00 0.00 3.97
575 583 5.123820 TCATGCTTGAGATTAGTTTTTCGGG 59.876 40.000 0.00 0.00 0.00 5.14
590 598 2.484742 ACTCACATGCTCATGCTTGA 57.515 45.000 9.58 1.92 44.17 3.02
593 601 1.003928 TCCAACTCACATGCTCATGCT 59.996 47.619 9.58 0.00 42.39 3.79
594 602 1.131883 GTCCAACTCACATGCTCATGC 59.868 52.381 9.58 0.00 42.39 4.06
595 603 2.708051 AGTCCAACTCACATGCTCATG 58.292 47.619 8.21 8.21 44.15 3.07
597 605 2.028112 GGTAGTCCAACTCACATGCTCA 60.028 50.000 0.00 0.00 0.00 4.26
598 606 2.622436 GGTAGTCCAACTCACATGCTC 58.378 52.381 0.00 0.00 0.00 4.26
600 608 1.739067 GGGTAGTCCAACTCACATGC 58.261 55.000 0.00 0.00 35.00 4.06
604 612 1.888512 TGTACGGGTAGTCCAACTCAC 59.111 52.381 0.00 0.00 34.36 3.51
605 613 2.291209 TGTACGGGTAGTCCAACTCA 57.709 50.000 0.00 0.00 34.36 3.41
606 614 4.989279 TTATGTACGGGTAGTCCAACTC 57.011 45.455 0.00 0.00 34.36 3.01
608 616 5.687285 CGTAATTATGTACGGGTAGTCCAAC 59.313 44.000 0.00 0.00 42.47 3.77
609 617 5.592282 TCGTAATTATGTACGGGTAGTCCAA 59.408 40.000 4.63 0.00 45.46 3.53
611 619 5.689383 TCGTAATTATGTACGGGTAGTCC 57.311 43.478 4.63 0.00 45.46 3.85
612 620 7.467623 CCTATCGTAATTATGTACGGGTAGTC 58.532 42.308 4.63 0.00 45.46 2.59
613 621 6.127897 GCCTATCGTAATTATGTACGGGTAGT 60.128 42.308 4.63 0.00 45.46 2.73
614 622 6.261118 GCCTATCGTAATTATGTACGGGTAG 58.739 44.000 4.63 7.62 45.46 3.18
616 624 4.082026 GGCCTATCGTAATTATGTACGGGT 60.082 45.833 0.00 0.00 45.46 5.28
617 625 4.159135 AGGCCTATCGTAATTATGTACGGG 59.841 45.833 1.29 4.98 45.46 5.28
619 627 5.106038 TGGAGGCCTATCGTAATTATGTACG 60.106 44.000 4.42 0.00 46.50 3.67
620 628 6.276832 TGGAGGCCTATCGTAATTATGTAC 57.723 41.667 4.42 0.00 0.00 2.90
622 630 6.374417 AATGGAGGCCTATCGTAATTATGT 57.626 37.500 4.42 0.00 0.00 2.29
623 631 8.964476 ATTAATGGAGGCCTATCGTAATTATG 57.036 34.615 4.42 0.00 0.00 1.90
625 633 9.802039 AAAATTAATGGAGGCCTATCGTAATTA 57.198 29.630 4.42 1.26 0.00 1.40
627 635 8.706322 AAAAATTAATGGAGGCCTATCGTAAT 57.294 30.769 4.42 5.31 0.00 1.89
628 636 7.776030 TGAAAAATTAATGGAGGCCTATCGTAA 59.224 33.333 4.42 2.81 0.00 3.18
632 640 6.323739 TGGTGAAAAATTAATGGAGGCCTATC 59.676 38.462 4.42 0.97 0.00 2.08
634 642 5.584913 TGGTGAAAAATTAATGGAGGCCTA 58.415 37.500 4.42 0.00 0.00 3.93
635 643 4.424842 TGGTGAAAAATTAATGGAGGCCT 58.575 39.130 3.86 3.86 0.00 5.19
636 644 4.222810 ACTGGTGAAAAATTAATGGAGGCC 59.777 41.667 0.00 0.00 0.00 5.19
637 645 5.405935 ACTGGTGAAAAATTAATGGAGGC 57.594 39.130 0.00 0.00 0.00 4.70
638 646 6.147656 GCAAACTGGTGAAAAATTAATGGAGG 59.852 38.462 0.00 0.00 0.00 4.30
639 647 6.147656 GGCAAACTGGTGAAAAATTAATGGAG 59.852 38.462 0.00 0.00 0.00 3.86
641 649 5.997129 AGGCAAACTGGTGAAAAATTAATGG 59.003 36.000 0.00 0.00 0.00 3.16
647 930 6.478512 TTCTTAGGCAAACTGGTGAAAAAT 57.521 33.333 0.00 0.00 0.00 1.82
799 1084 7.381948 GGAAATTTTCATGCATTTTCCAAAACC 59.618 33.333 25.09 9.03 43.05 3.27
857 1146 6.209192 TGTCAAGCAATCATTGGTGACTAATT 59.791 34.615 21.91 0.00 41.89 1.40
860 1149 4.650734 TGTCAAGCAATCATTGGTGACTA 58.349 39.130 21.91 12.44 41.89 2.59
866 1155 5.069383 TCCCAATATGTCAAGCAATCATTGG 59.931 40.000 0.00 0.00 40.68 3.16
904 1193 8.594550 TGGTTCTTATAGCTAGAAAGTTGAGTT 58.405 33.333 14.89 0.00 33.71 3.01
960 1251 4.072839 GCTAGCTAGTGGTTTCTTTGGTT 58.927 43.478 21.62 0.00 0.00 3.67
1039 1332 3.181468 TGCACAATGGCAATGAGAACAAA 60.181 39.130 10.01 0.00 41.65 2.83
1106 1399 3.738830 ACGGAGTTAGTGCAACAACTA 57.261 42.857 12.78 0.00 37.78 2.24
1118 1411 5.479893 GGAACCACCATTCGACGGAGTTA 62.480 52.174 7.06 0.00 39.11 2.24
1149 1442 4.821805 CACACAGTTATCTTCAGTGGGTTT 59.178 41.667 0.00 0.00 27.98 3.27
1191 1484 1.424493 CGTTGATCCGGAGCTTGAGC 61.424 60.000 22.18 1.46 42.49 4.26
1276 1569 3.186345 CCTTGATGGCAGTGCAGAT 57.814 52.632 18.61 8.07 0.00 2.90
1344 1637 7.429636 TGTCTTGTTACAATGGTTTAGTAGC 57.570 36.000 0.00 0.00 0.00 3.58
1400 1693 4.806892 TCGGGAGGTATAGTTGGTCATAA 58.193 43.478 0.00 0.00 0.00 1.90
1579 1881 7.207383 TGTAGGGTAATATCTTCAATGACACG 58.793 38.462 0.00 0.00 0.00 4.49
1715 2031 8.958060 ATGGTTCCTAGTAAGAGCAAGATATA 57.042 34.615 0.00 0.00 0.00 0.86
1744 2060 7.748677 TGAACCATATGATGAATGACTACCAT 58.251 34.615 3.65 0.00 36.99 3.55
1748 2064 8.485392 TCTGTTGAACCATATGATGAATGACTA 58.515 33.333 3.65 0.00 0.00 2.59
1756 2072 8.991243 AAACAAATCTGTTGAACCATATGATG 57.009 30.769 3.65 0.00 45.25 3.07
1771 2089 9.390795 CATCTAGTTGAGAACAAAACAAATCTG 57.609 33.333 0.00 0.00 37.85 2.90
1778 2096 7.693952 TGAACACATCTAGTTGAGAACAAAAC 58.306 34.615 7.81 0.00 37.85 2.43
1779 2097 7.857734 TGAACACATCTAGTTGAGAACAAAA 57.142 32.000 7.81 0.00 37.85 2.44
1802 2120 2.299582 TGGAGGCCACATGAACAAAATG 59.700 45.455 5.01 0.00 0.00 2.32
1806 2124 1.686052 GTTTGGAGGCCACATGAACAA 59.314 47.619 5.01 0.00 30.78 2.83
1882 2200 3.248024 ACAGGACAACCACTCATCCTAA 58.752 45.455 0.00 0.00 39.66 2.69
1891 2209 2.543777 TCAGCTTACAGGACAACCAC 57.456 50.000 0.00 0.00 38.94 4.16
1893 2211 3.334583 TGATCAGCTTACAGGACAACC 57.665 47.619 0.00 0.00 0.00 3.77
1895 2213 3.327757 AGGTTGATCAGCTTACAGGACAA 59.672 43.478 9.57 0.00 0.00 3.18
1896 2214 2.906389 AGGTTGATCAGCTTACAGGACA 59.094 45.455 9.57 0.00 0.00 4.02
1897 2215 3.196685 AGAGGTTGATCAGCTTACAGGAC 59.803 47.826 9.57 0.00 31.44 3.85
1899 2217 3.902881 AGAGGTTGATCAGCTTACAGG 57.097 47.619 9.57 0.00 31.44 4.00
1902 2220 4.569943 TCACAAGAGGTTGATCAGCTTAC 58.430 43.478 9.57 0.00 37.10 2.34
1903 2221 4.284490 ACTCACAAGAGGTTGATCAGCTTA 59.716 41.667 9.57 0.00 46.44 3.09
1904 2222 3.072184 ACTCACAAGAGGTTGATCAGCTT 59.928 43.478 9.57 1.04 46.44 3.74
1906 2224 2.999355 GACTCACAAGAGGTTGATCAGC 59.001 50.000 0.04 0.04 46.44 4.26
1908 2226 2.303022 GGGACTCACAAGAGGTTGATCA 59.697 50.000 0.00 0.00 46.44 2.92
1909 2227 2.303022 TGGGACTCACAAGAGGTTGATC 59.697 50.000 0.00 0.00 46.44 2.92
1911 2229 1.416401 GTGGGACTCACAAGAGGTTGA 59.584 52.381 0.00 0.00 46.44 3.18
1912 2230 1.884235 GTGGGACTCACAAGAGGTTG 58.116 55.000 0.00 0.00 46.44 3.77
1939 2257 6.070938 TGGCCACATCATTGTTCAATTAATCA 60.071 34.615 0.00 0.00 32.34 2.57
1940 2258 6.339730 TGGCCACATCATTGTTCAATTAATC 58.660 36.000 0.00 0.00 32.34 1.75
1942 2260 5.735285 TGGCCACATCATTGTTCAATTAA 57.265 34.783 0.00 0.00 32.34 1.40
1944 2262 4.020039 ACATGGCCACATCATTGTTCAATT 60.020 37.500 8.16 0.00 34.35 2.32
1945 2263 3.516300 ACATGGCCACATCATTGTTCAAT 59.484 39.130 8.16 0.00 34.35 2.57
1946 2264 2.898612 ACATGGCCACATCATTGTTCAA 59.101 40.909 8.16 0.00 34.35 2.69
1947 2265 2.527497 ACATGGCCACATCATTGTTCA 58.473 42.857 8.16 0.00 34.35 3.18
1949 2267 2.613474 GCAACATGGCCACATCATTGTT 60.613 45.455 8.16 11.44 34.73 2.83
1950 2268 1.066716 GCAACATGGCCACATCATTGT 60.067 47.619 8.16 4.09 34.73 2.71
1951 2269 1.647346 GCAACATGGCCACATCATTG 58.353 50.000 8.16 9.72 34.35 2.82
1969 4021 0.946528 TGCAGCATATCAACATCGGC 59.053 50.000 0.00 0.00 0.00 5.54
1970 4022 2.551032 ACATGCAGCATATCAACATCGG 59.449 45.455 7.82 0.00 0.00 4.18
1971 4023 3.249080 TGACATGCAGCATATCAACATCG 59.751 43.478 14.18 0.00 23.31 3.84
1972 4024 4.823790 TGACATGCAGCATATCAACATC 57.176 40.909 14.18 1.85 23.31 3.06
1973 4025 4.885325 TCTTGACATGCAGCATATCAACAT 59.115 37.500 22.66 0.00 33.18 2.71
1974 4026 4.263435 TCTTGACATGCAGCATATCAACA 58.737 39.130 22.66 12.09 33.18 3.33
1975 4027 4.573607 TCTCTTGACATGCAGCATATCAAC 59.426 41.667 22.66 7.13 33.18 3.18
1977 4029 4.411256 TCTCTTGACATGCAGCATATCA 57.589 40.909 12.54 12.54 0.00 2.15
1979 4031 7.997773 ATATTTCTCTTGACATGCAGCATAT 57.002 32.000 7.82 0.00 0.00 1.78
1980 4032 7.812690 AATATTTCTCTTGACATGCAGCATA 57.187 32.000 7.82 0.00 0.00 3.14
1981 4033 6.710597 AATATTTCTCTTGACATGCAGCAT 57.289 33.333 0.52 0.52 0.00 3.79
1982 4034 7.812690 ATAATATTTCTCTTGACATGCAGCA 57.187 32.000 0.00 0.00 0.00 4.41
1983 4035 8.997323 ACTATAATATTTCTCTTGACATGCAGC 58.003 33.333 0.00 0.00 0.00 5.25
1985 4037 9.276590 CCACTATAATATTTCTCTTGACATGCA 57.723 33.333 0.00 0.00 0.00 3.96
1986 4038 8.725148 CCCACTATAATATTTCTCTTGACATGC 58.275 37.037 0.00 0.00 0.00 4.06
1987 4039 9.224267 CCCCACTATAATATTTCTCTTGACATG 57.776 37.037 0.00 0.00 0.00 3.21
1988 4040 9.170890 TCCCCACTATAATATTTCTCTTGACAT 57.829 33.333 0.00 0.00 0.00 3.06
1990 4042 9.442047 CATCCCCACTATAATATTTCTCTTGAC 57.558 37.037 0.00 0.00 0.00 3.18
1991 4043 8.605947 CCATCCCCACTATAATATTTCTCTTGA 58.394 37.037 0.00 0.00 0.00 3.02
1992 4044 8.605947 TCCATCCCCACTATAATATTTCTCTTG 58.394 37.037 0.00 0.00 0.00 3.02
2003 4359 7.318401 ACCTAAATAGTCCATCCCCACTATAA 58.682 38.462 0.00 0.00 35.21 0.98
2004 4360 6.882155 ACCTAAATAGTCCATCCCCACTATA 58.118 40.000 0.00 0.00 35.21 1.31
2287 4830 9.970395 TTCTTTTTCTCTCGTACTTTATGTGTA 57.030 29.630 0.00 0.00 0.00 2.90
2289 4832 9.798885 CTTTCTTTTTCTCTCGTACTTTATGTG 57.201 33.333 0.00 0.00 0.00 3.21
2299 4842 9.937175 CACTATTTTTCTTTCTTTTTCTCTCGT 57.063 29.630 0.00 0.00 0.00 4.18
2300 4843 9.387123 CCACTATTTTTCTTTCTTTTTCTCTCG 57.613 33.333 0.00 0.00 0.00 4.04
2304 4847 9.516314 CGAACCACTATTTTTCTTTCTTTTTCT 57.484 29.630 0.00 0.00 0.00 2.52
2305 4848 8.752254 CCGAACCACTATTTTTCTTTCTTTTTC 58.248 33.333 0.00 0.00 0.00 2.29
2311 4854 4.022676 TGCCCGAACCACTATTTTTCTTTC 60.023 41.667 0.00 0.00 0.00 2.62
2315 4858 2.163613 CCTGCCCGAACCACTATTTTTC 59.836 50.000 0.00 0.00 0.00 2.29
2316 4859 2.167662 CCTGCCCGAACCACTATTTTT 58.832 47.619 0.00 0.00 0.00 1.94
2324 4867 3.961414 GGAACCCTGCCCGAACCA 61.961 66.667 0.00 0.00 0.00 3.67
2330 4873 2.034221 GTGAGTGGAACCCTGCCC 59.966 66.667 0.00 0.00 37.80 5.36
2333 4876 0.764890 TTGGAGTGAGTGGAACCCTG 59.235 55.000 0.00 0.00 37.80 4.45
2335 4878 2.224769 TGAATTGGAGTGAGTGGAACCC 60.225 50.000 0.00 0.00 37.80 4.11
2341 4884 9.429359 GTCCTATATTATGAATTGGAGTGAGTG 57.571 37.037 0.00 0.00 0.00 3.51
2345 4888 8.833231 AACGTCCTATATTATGAATTGGAGTG 57.167 34.615 0.00 0.00 0.00 3.51
2353 4896 9.496873 CCCAACAATAACGTCCTATATTATGAA 57.503 33.333 0.00 0.00 0.00 2.57
2355 4898 8.098286 TCCCCAACAATAACGTCCTATATTATG 58.902 37.037 0.00 0.00 0.00 1.90
2364 5919 1.465777 CGTTCCCCAACAATAACGTCC 59.534 52.381 0.00 0.00 39.73 4.79
2374 5929 4.396790 TGAATTATTGCTACGTTCCCCAAC 59.603 41.667 0.00 0.00 0.00 3.77
2375 5930 4.590918 TGAATTATTGCTACGTTCCCCAA 58.409 39.130 0.00 0.00 0.00 4.12
2376 5931 4.223556 TGAATTATTGCTACGTTCCCCA 57.776 40.909 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.