Multiple sequence alignment - TraesCS5D01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G346800 chr5D 100.000 4009 0 0 1 4009 432869967 432873975 0.000000e+00 7404.0
1 TraesCS5D01G346800 chr5B 94.372 2452 77 20 807 3204 525809817 525812261 0.000000e+00 3707.0
2 TraesCS5D01G346800 chr5B 83.426 718 54 33 1 677 525809055 525809748 1.230000e-169 606.0
3 TraesCS5D01G346800 chr5B 86.228 334 36 8 3282 3612 525812291 525812617 1.770000e-93 353.0
4 TraesCS5D01G346800 chr5B 95.200 125 4 2 1377 1500 339629904 339629781 3.160000e-46 196.0
5 TraesCS5D01G346800 chr5A 88.084 2249 153 72 1488 3686 547410702 547412885 0.000000e+00 2562.0
6 TraesCS5D01G346800 chr5A 90.429 1400 79 22 3 1377 547409347 547410716 0.000000e+00 1792.0
7 TraesCS5D01G346800 chr7D 88.048 1414 95 23 1643 3018 566026735 566028112 0.000000e+00 1607.0
8 TraesCS5D01G346800 chr7D 87.564 780 61 13 629 1375 566025203 566025979 0.000000e+00 870.0
9 TraesCS5D01G346800 chr7D 86.928 153 18 2 1488 1638 566025967 566026119 1.920000e-38 171.0
10 TraesCS5D01G346800 chr7A 85.755 1418 119 32 1643 3018 652302330 652303706 0.000000e+00 1423.0
11 TraesCS5D01G346800 chr7A 86.923 780 66 16 629 1375 652301128 652301904 0.000000e+00 843.0
12 TraesCS5D01G346800 chr7A 89.189 148 14 2 1488 1633 652301892 652302039 2.460000e-42 183.0
13 TraesCS5D01G346800 chr7B 83.818 1582 131 51 1757 3272 617566913 617568435 0.000000e+00 1387.0
14 TraesCS5D01G346800 chr7B 86.428 781 68 15 629 1375 617566094 617566870 0.000000e+00 821.0
15 TraesCS5D01G346800 chr7B 82.673 681 50 19 9 677 493210820 493211444 3.520000e-150 542.0
16 TraesCS5D01G346800 chr7B 89.286 56 5 1 1488 1542 617566858 617566913 7.190000e-08 69.4
17 TraesCS5D01G346800 chrUn 97.414 116 3 0 1376 1491 279937607 279937722 8.790000e-47 198.0
18 TraesCS5D01G346800 chrUn 97.414 116 3 0 1376 1491 292395556 292395671 8.790000e-47 198.0
19 TraesCS5D01G346800 chr3B 97.414 116 3 0 1377 1492 689002748 689002863 8.790000e-47 198.0
20 TraesCS5D01G346800 chr2B 96.667 120 3 1 1377 1496 244915658 244915776 8.790000e-47 198.0
21 TraesCS5D01G346800 chr6B 95.200 125 3 3 1377 1499 602841045 602840922 1.140000e-45 195.0
22 TraesCS5D01G346800 chr1A 95.122 123 5 1 1377 1499 137410016 137409895 4.090000e-45 193.0
23 TraesCS5D01G346800 chr1D 93.750 128 5 3 1381 1508 190787057 190786933 5.290000e-44 189.0
24 TraesCS5D01G346800 chr3D 91.667 72 6 0 2149 2220 133228560 133228631 2.550000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G346800 chr5D 432869967 432873975 4008 False 7404.000000 7404 100.000000 1 4009 1 chr5D.!!$F1 4008
1 TraesCS5D01G346800 chr5B 525809055 525812617 3562 False 1555.333333 3707 88.008667 1 3612 3 chr5B.!!$F1 3611
2 TraesCS5D01G346800 chr5A 547409347 547412885 3538 False 2177.000000 2562 89.256500 3 3686 2 chr5A.!!$F1 3683
3 TraesCS5D01G346800 chr7D 566025203 566028112 2909 False 882.666667 1607 87.513333 629 3018 3 chr7D.!!$F1 2389
4 TraesCS5D01G346800 chr7A 652301128 652303706 2578 False 816.333333 1423 87.289000 629 3018 3 chr7A.!!$F1 2389
5 TraesCS5D01G346800 chr7B 617566094 617568435 2341 False 759.133333 1387 86.510667 629 3272 3 chr7B.!!$F2 2643
6 TraesCS5D01G346800 chr7B 493210820 493211444 624 False 542.000000 542 82.673000 9 677 1 chr7B.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 890 0.445436 GCCATCAGTCTGTTCTTGCG 59.555 55.0 0.0 0.0 0.0 4.85 F
1396 1510 0.473755 TTTGAACCAGCCTCTCTGCA 59.526 50.0 0.0 0.0 41.5 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 3557 0.471617 CCTCCCTCCGCAGATTGAAT 59.528 55.0 0.0 0.00 0.00 2.57 R
3019 3808 0.606604 TCCAGGAACGGCAGTAGTTC 59.393 55.0 0.0 0.89 45.16 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.762247 CCGGCCCGTCGTCCTTTA 61.762 66.667 0.85 0.00 0.00 1.85
214 249 4.704057 GGATCCATTCAGCCTGATTTATCC 59.296 45.833 6.95 3.95 0.00 2.59
277 312 2.328099 CCGAGTTGCTTCAGGCCAC 61.328 63.158 5.01 0.00 40.92 5.01
325 360 4.285020 TGACCTGACTGCTCTGATAGAAT 58.715 43.478 0.00 0.00 0.00 2.40
340 379 8.864069 TCTGATAGAATCTCGTTTTCTGAATC 57.136 34.615 0.00 4.93 35.19 2.52
462 501 3.645212 TGATGCCTCTCCTCTCTAATTGG 59.355 47.826 0.00 0.00 0.00 3.16
464 503 2.023015 TGCCTCTCCTCTCTAATTGGGA 60.023 50.000 0.00 0.00 0.00 4.37
540 597 3.548770 TCCTGAATCTCATTGCCACATC 58.451 45.455 0.00 0.00 0.00 3.06
559 616 6.351881 CCACATCTAGTTTACTTCTAGCCCAA 60.352 42.308 0.00 0.00 36.00 4.12
590 647 4.307259 AGGCTTTGGGGACAGATAGATAA 58.693 43.478 0.00 0.00 44.54 1.75
644 701 3.640967 GAGAGGGTATCTGCTTCATCTGT 59.359 47.826 0.00 0.00 38.84 3.41
649 706 4.256920 GGTATCTGCTTCATCTGTGTTGT 58.743 43.478 0.00 0.00 0.00 3.32
656 713 4.002982 GCTTCATCTGTGTTGTACATGGA 58.997 43.478 0.00 0.00 38.92 3.41
661 718 4.365514 TCTGTGTTGTACATGGACCATT 57.634 40.909 3.52 0.00 38.92 3.16
685 742 5.123820 TGTCTTAATGTGTATTTGCTGGCTC 59.876 40.000 0.00 0.00 0.00 4.70
687 744 5.355071 TCTTAATGTGTATTTGCTGGCTCTG 59.645 40.000 0.00 0.00 0.00 3.35
757 825 9.132521 ACGTATTAGTTGTTACTGTACATTCAC 57.867 33.333 0.00 0.00 35.78 3.18
793 862 5.957842 TTTGTCATGTTCAGTACATTCCC 57.042 39.130 0.00 0.00 45.19 3.97
813 882 1.525923 CCTCCCAGCCATCAGTCTG 59.474 63.158 0.00 0.00 0.00 3.51
821 890 0.445436 GCCATCAGTCTGTTCTTGCG 59.555 55.000 0.00 0.00 0.00 4.85
969 1075 6.403878 TGCTTTAACCCTCTGTTCTATGTAC 58.596 40.000 0.00 0.00 38.42 2.90
1016 1122 4.832248 TCAACAATGTCAGATCCTGGTAC 58.168 43.478 0.00 0.00 31.51 3.34
1340 1452 8.565896 AATTCAGCTAAAATGTGTGTCAGATA 57.434 30.769 0.00 0.00 0.00 1.98
1379 1493 7.963532 TCTTCTCCTTATTATGCGGATAGTTT 58.036 34.615 0.00 0.00 0.00 2.66
1396 1510 0.473755 TTTGAACCAGCCTCTCTGCA 59.526 50.000 0.00 0.00 41.50 4.41
1497 1611 3.380320 GGTCTGCCCTTTTTATTATGCGT 59.620 43.478 0.00 0.00 0.00 5.24
1501 1615 4.865776 TGCCCTTTTTATTATGCGTATGC 58.134 39.130 0.00 0.00 43.20 3.14
1615 1731 9.872757 TGTCATTTTATCGAAGTTTGTCTTAAC 57.127 29.630 0.00 0.00 36.40 2.01
1627 1743 6.869695 AGTTTGTCTTAACGGAAATTTTGGT 58.130 32.000 0.00 0.00 33.26 3.67
1879 2613 5.008811 TGTTGGTGTGGATTTTAAGGTAACG 59.991 40.000 0.00 0.00 46.39 3.18
2054 2791 0.729116 ATTTGTGGCTTCTGCGATCG 59.271 50.000 11.69 11.69 40.82 3.69
2287 3029 4.398988 TGGGTTCAGATTGATGCATACAAC 59.601 41.667 0.00 2.13 0.00 3.32
2306 3048 2.966915 ACCACTGTCAGTAACTGGGTA 58.033 47.619 4.85 0.00 32.49 3.69
2608 3387 7.719193 TCCAGTTTTCTCAAGTTTCATGACATA 59.281 33.333 0.00 0.00 0.00 2.29
2648 3431 1.588674 TGGAAACACGCTGGTAGTTG 58.411 50.000 0.00 0.00 33.40 3.16
2678 3461 6.588756 TCTGATGGTTTAACTAACTGTAAGCG 59.411 38.462 0.00 0.00 37.60 4.68
2774 3557 3.249189 AGGAAGCAGGTGGCCGAA 61.249 61.111 0.00 0.00 46.50 4.30
2940 3729 0.746204 GCCTAAGCAGGTTGAGGAGC 60.746 60.000 10.40 0.00 44.68 4.70
2993 3782 2.087009 CGAGGGCGACGACAAGTTC 61.087 63.158 1.63 0.00 40.82 3.01
3030 3823 1.069906 GTTGCTGTTGAACTACTGCCG 60.070 52.381 13.03 0.00 40.86 5.69
3072 3918 6.430864 TCATCACTAGAGATGAGGAAGACTT 58.569 40.000 23.86 0.00 46.92 3.01
3149 3998 0.630673 TGCTAGATTGGGGGCATTGT 59.369 50.000 0.00 0.00 0.00 2.71
3243 4104 1.400530 CCTGGACGGTAGATGGGGAC 61.401 65.000 0.00 0.00 0.00 4.46
3271 4132 6.197096 CGCATTGGCTTCTTGTTATGAAATAC 59.803 38.462 0.00 0.00 38.10 1.89
3272 4133 6.197096 GCATTGGCTTCTTGTTATGAAATACG 59.803 38.462 0.00 0.00 36.96 3.06
3273 4134 5.811399 TGGCTTCTTGTTATGAAATACGG 57.189 39.130 0.00 0.00 0.00 4.02
3274 4135 5.492895 TGGCTTCTTGTTATGAAATACGGA 58.507 37.500 0.00 0.00 0.00 4.69
3277 4138 6.456988 GGCTTCTTGTTATGAAATACGGAGTG 60.457 42.308 0.00 0.00 45.73 3.51
3283 4144 7.241663 TGTTATGAAATACGGAGTGTTATGC 57.758 36.000 0.00 0.00 42.14 3.14
3323 4184 2.428171 GGCCATGCATGAAACATAGTGT 59.572 45.455 28.31 0.00 0.00 3.55
3341 4202 7.775561 ACATAGTGTTTGTTTTCTTCCTCTCTT 59.224 33.333 0.00 0.00 0.00 2.85
3345 4206 5.418840 TGTTTGTTTTCTTCCTCTCTTTGCT 59.581 36.000 0.00 0.00 0.00 3.91
3360 4221 1.181098 TTGCTTTGCTTGAGGCTCCC 61.181 55.000 12.86 0.89 42.39 4.30
3366 4227 0.478072 TGCTTGAGGCTCCCTTTTCA 59.522 50.000 12.86 0.00 42.39 2.69
3382 4243 7.235079 TCCCTTTTCACATCACCTAATGTTTA 58.765 34.615 0.00 0.00 37.78 2.01
3416 4277 9.689075 CGTAATTAGTCTGTCAAACATAATGTG 57.311 33.333 0.00 0.00 0.00 3.21
3442 4303 4.113354 ACTCGATCGCCTAATGTTTCTTC 58.887 43.478 11.09 0.00 0.00 2.87
3446 4307 4.806247 CGATCGCCTAATGTTTCTTCTTCT 59.194 41.667 0.26 0.00 0.00 2.85
3447 4308 5.051374 CGATCGCCTAATGTTTCTTCTTCTC 60.051 44.000 0.26 0.00 0.00 2.87
3448 4309 5.147330 TCGCCTAATGTTTCTTCTTCTCA 57.853 39.130 0.00 0.00 0.00 3.27
3478 4339 7.388500 CCTTATGTTTCTTTTTGGATGCACAAT 59.612 33.333 0.00 0.00 0.00 2.71
3480 4341 6.360844 TGTTTCTTTTTGGATGCACAATTG 57.639 33.333 3.24 3.24 0.00 2.32
3482 4343 4.686191 TCTTTTTGGATGCACAATTGGT 57.314 36.364 10.83 0.00 0.00 3.67
3537 4398 2.297880 GGCTTTGGTGGGTTTCGTTTAT 59.702 45.455 0.00 0.00 0.00 1.40
3541 4402 5.050634 GCTTTGGTGGGTTTCGTTTATTTTC 60.051 40.000 0.00 0.00 0.00 2.29
3592 4455 2.299867 AGCATTTCAATCCCGTGCTTTT 59.700 40.909 0.00 0.00 43.03 2.27
3647 4510 3.254903 GTGTTGTAATGGAAACCTCCCAC 59.745 47.826 0.00 0.00 41.64 4.61
3668 4532 6.492087 CCCACCTTGTTATCTTTGAAGGTTAA 59.508 38.462 0.00 0.00 44.75 2.01
3669 4533 7.178451 CCCACCTTGTTATCTTTGAAGGTTAAT 59.822 37.037 0.00 0.00 44.75 1.40
3670 4534 8.585018 CCACCTTGTTATCTTTGAAGGTTAATT 58.415 33.333 0.00 0.00 44.75 1.40
3697 4561 9.746457 ACTAGCATATGAAGAGTATATGTCTCA 57.254 33.333 6.97 3.51 39.54 3.27
3699 4563 8.648698 AGCATATGAAGAGTATATGTCTCAGT 57.351 34.615 6.97 1.24 39.54 3.41
3700 4564 9.087871 AGCATATGAAGAGTATATGTCTCAGTT 57.912 33.333 6.97 0.61 39.54 3.16
3701 4565 9.703892 GCATATGAAGAGTATATGTCTCAGTTT 57.296 33.333 6.97 0.08 39.54 2.66
3709 4573 9.877178 AGAGTATATGTCTCAGTTTTTACTTGG 57.123 33.333 10.77 0.00 34.73 3.61
3710 4574 8.494016 AGTATATGTCTCAGTTTTTACTTGGC 57.506 34.615 0.00 0.00 0.00 4.52
3711 4575 6.759497 ATATGTCTCAGTTTTTACTTGGCC 57.241 37.500 0.00 0.00 0.00 5.36
3712 4576 3.219281 TGTCTCAGTTTTTACTTGGCCC 58.781 45.455 0.00 0.00 0.00 5.80
3713 4577 3.219281 GTCTCAGTTTTTACTTGGCCCA 58.781 45.455 0.00 0.00 0.00 5.36
3714 4578 3.634910 GTCTCAGTTTTTACTTGGCCCAA 59.365 43.478 0.00 0.00 0.00 4.12
3715 4579 4.280929 GTCTCAGTTTTTACTTGGCCCAAT 59.719 41.667 0.00 0.00 0.00 3.16
3716 4580 4.898861 TCTCAGTTTTTACTTGGCCCAATT 59.101 37.500 0.00 0.00 0.00 2.32
3717 4581 6.015772 GTCTCAGTTTTTACTTGGCCCAATTA 60.016 38.462 0.00 0.00 0.00 1.40
3718 4582 6.015772 TCTCAGTTTTTACTTGGCCCAATTAC 60.016 38.462 0.00 0.00 0.00 1.89
3719 4583 5.011227 TCAGTTTTTACTTGGCCCAATTACC 59.989 40.000 0.00 0.00 0.00 2.85
3720 4584 5.011635 CAGTTTTTACTTGGCCCAATTACCT 59.988 40.000 0.00 0.00 0.00 3.08
3721 4585 5.245301 AGTTTTTACTTGGCCCAATTACCTC 59.755 40.000 0.00 0.00 0.00 3.85
3722 4586 4.390129 TTTACTTGGCCCAATTACCTCA 57.610 40.909 0.00 0.00 0.00 3.86
3723 4587 2.990740 ACTTGGCCCAATTACCTCAA 57.009 45.000 0.00 0.00 0.00 3.02
3724 4588 3.252554 ACTTGGCCCAATTACCTCAAA 57.747 42.857 0.00 0.00 0.00 2.69
3725 4589 2.897326 ACTTGGCCCAATTACCTCAAAC 59.103 45.455 0.00 0.00 0.00 2.93
3726 4590 1.540267 TGGCCCAATTACCTCAAACG 58.460 50.000 0.00 0.00 0.00 3.60
3727 4591 1.074084 TGGCCCAATTACCTCAAACGA 59.926 47.619 0.00 0.00 0.00 3.85
3728 4592 1.471287 GGCCCAATTACCTCAAACGAC 59.529 52.381 0.00 0.00 0.00 4.34
3729 4593 2.156098 GCCCAATTACCTCAAACGACA 58.844 47.619 0.00 0.00 0.00 4.35
3730 4594 2.095415 GCCCAATTACCTCAAACGACAC 60.095 50.000 0.00 0.00 0.00 3.67
3731 4595 3.142951 CCCAATTACCTCAAACGACACA 58.857 45.455 0.00 0.00 0.00 3.72
3732 4596 3.566322 CCCAATTACCTCAAACGACACAA 59.434 43.478 0.00 0.00 0.00 3.33
3733 4597 4.320202 CCCAATTACCTCAAACGACACAAG 60.320 45.833 0.00 0.00 0.00 3.16
3734 4598 4.274950 CCAATTACCTCAAACGACACAAGT 59.725 41.667 0.00 0.00 0.00 3.16
3735 4599 5.220970 CCAATTACCTCAAACGACACAAGTT 60.221 40.000 0.00 0.00 0.00 2.66
3736 4600 6.262601 CAATTACCTCAAACGACACAAGTTT 58.737 36.000 0.00 0.00 41.90 2.66
3737 4601 5.883503 TTACCTCAAACGACACAAGTTTT 57.116 34.783 0.00 0.00 39.50 2.43
3738 4602 4.776795 ACCTCAAACGACACAAGTTTTT 57.223 36.364 0.00 0.00 39.50 1.94
3772 4636 6.927294 AAGAGATCATTCACCGAATTAACC 57.073 37.500 0.00 0.00 28.87 2.85
3773 4637 6.240549 AGAGATCATTCACCGAATTAACCT 57.759 37.500 0.00 0.00 28.87 3.50
3774 4638 6.284459 AGAGATCATTCACCGAATTAACCTC 58.716 40.000 0.00 0.00 28.87 3.85
3775 4639 5.368989 AGATCATTCACCGAATTAACCTCC 58.631 41.667 0.00 0.00 28.87 4.30
3776 4640 3.881220 TCATTCACCGAATTAACCTCCC 58.119 45.455 0.00 0.00 28.87 4.30
3777 4641 3.521937 TCATTCACCGAATTAACCTCCCT 59.478 43.478 0.00 0.00 28.87 4.20
3778 4642 3.343941 TTCACCGAATTAACCTCCCTG 57.656 47.619 0.00 0.00 0.00 4.45
3779 4643 2.262637 TCACCGAATTAACCTCCCTGT 58.737 47.619 0.00 0.00 0.00 4.00
3780 4644 2.640826 TCACCGAATTAACCTCCCTGTT 59.359 45.455 0.00 0.00 0.00 3.16
3781 4645 3.007635 CACCGAATTAACCTCCCTGTTC 58.992 50.000 0.00 0.00 0.00 3.18
3782 4646 2.026542 ACCGAATTAACCTCCCTGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
3783 4647 2.026636 CCGAATTAACCTCCCTGTTCCA 60.027 50.000 0.00 0.00 0.00 3.53
3784 4648 3.371595 CCGAATTAACCTCCCTGTTCCAT 60.372 47.826 0.00 0.00 0.00 3.41
3785 4649 4.270008 CGAATTAACCTCCCTGTTCCATT 58.730 43.478 0.00 0.00 0.00 3.16
3786 4650 5.433526 CGAATTAACCTCCCTGTTCCATTA 58.566 41.667 0.00 0.00 0.00 1.90
3787 4651 6.062095 CGAATTAACCTCCCTGTTCCATTAT 58.938 40.000 0.00 0.00 0.00 1.28
3788 4652 6.204882 CGAATTAACCTCCCTGTTCCATTATC 59.795 42.308 0.00 0.00 0.00 1.75
3789 4653 6.590656 ATTAACCTCCCTGTTCCATTATCA 57.409 37.500 0.00 0.00 0.00 2.15
3790 4654 6.590656 TTAACCTCCCTGTTCCATTATCAT 57.409 37.500 0.00 0.00 0.00 2.45
3791 4655 5.472301 AACCTCCCTGTTCCATTATCATT 57.528 39.130 0.00 0.00 0.00 2.57
3792 4656 6.590656 AACCTCCCTGTTCCATTATCATTA 57.409 37.500 0.00 0.00 0.00 1.90
3793 4657 6.590656 ACCTCCCTGTTCCATTATCATTAA 57.409 37.500 0.00 0.00 0.00 1.40
3794 4658 7.166758 ACCTCCCTGTTCCATTATCATTAAT 57.833 36.000 0.00 0.00 0.00 1.40
3795 4659 7.595488 ACCTCCCTGTTCCATTATCATTAATT 58.405 34.615 0.00 0.00 0.00 1.40
3796 4660 7.725844 ACCTCCCTGTTCCATTATCATTAATTC 59.274 37.037 0.00 0.00 0.00 2.17
3797 4661 7.946776 CCTCCCTGTTCCATTATCATTAATTCT 59.053 37.037 0.00 0.00 0.00 2.40
3812 4676 9.956720 ATCATTAATTCTAAACATACAGCAAGC 57.043 29.630 0.00 0.00 0.00 4.01
3813 4677 9.177608 TCATTAATTCTAAACATACAGCAAGCT 57.822 29.630 0.00 0.00 0.00 3.74
3814 4678 9.793252 CATTAATTCTAAACATACAGCAAGCTT 57.207 29.630 0.00 0.00 0.00 3.74
3819 4683 7.553881 TCTAAACATACAGCAAGCTTAATCC 57.446 36.000 0.00 0.00 0.00 3.01
3820 4684 7.338710 TCTAAACATACAGCAAGCTTAATCCT 58.661 34.615 0.00 0.00 0.00 3.24
3821 4685 6.840780 AAACATACAGCAAGCTTAATCCTT 57.159 33.333 0.00 0.00 0.00 3.36
3822 4686 7.938140 AAACATACAGCAAGCTTAATCCTTA 57.062 32.000 0.00 0.00 0.00 2.69
3823 4687 8.525290 AAACATACAGCAAGCTTAATCCTTAT 57.475 30.769 0.00 0.00 0.00 1.73
3824 4688 7.736447 ACATACAGCAAGCTTAATCCTTATC 57.264 36.000 0.00 0.00 0.00 1.75
3825 4689 6.425114 ACATACAGCAAGCTTAATCCTTATCG 59.575 38.462 0.00 0.00 0.00 2.92
3826 4690 5.023533 ACAGCAAGCTTAATCCTTATCGA 57.976 39.130 0.00 0.00 0.00 3.59
3827 4691 5.615289 ACAGCAAGCTTAATCCTTATCGAT 58.385 37.500 2.16 2.16 0.00 3.59
3828 4692 5.698545 ACAGCAAGCTTAATCCTTATCGATC 59.301 40.000 0.00 0.00 0.00 3.69
3829 4693 5.931146 CAGCAAGCTTAATCCTTATCGATCT 59.069 40.000 0.00 0.00 0.00 2.75
3830 4694 5.931146 AGCAAGCTTAATCCTTATCGATCTG 59.069 40.000 0.00 0.00 0.00 2.90
3831 4695 5.390356 GCAAGCTTAATCCTTATCGATCTGC 60.390 44.000 0.00 0.00 0.00 4.26
3832 4696 4.826556 AGCTTAATCCTTATCGATCTGCC 58.173 43.478 0.00 0.00 0.00 4.85
3833 4697 4.284490 AGCTTAATCCTTATCGATCTGCCA 59.716 41.667 0.00 0.00 0.00 4.92
3834 4698 5.046014 AGCTTAATCCTTATCGATCTGCCAT 60.046 40.000 0.00 0.00 0.00 4.40
3835 4699 5.064452 GCTTAATCCTTATCGATCTGCCATG 59.936 44.000 0.00 0.00 0.00 3.66
3836 4700 2.462456 TCCTTATCGATCTGCCATGC 57.538 50.000 0.00 0.00 0.00 4.06
3837 4701 1.002430 TCCTTATCGATCTGCCATGCC 59.998 52.381 0.00 0.00 0.00 4.40
3838 4702 1.446907 CTTATCGATCTGCCATGCCC 58.553 55.000 0.00 0.00 0.00 5.36
3839 4703 1.002888 CTTATCGATCTGCCATGCCCT 59.997 52.381 0.00 0.00 0.00 5.19
3840 4704 0.610174 TATCGATCTGCCATGCCCTC 59.390 55.000 0.00 0.00 0.00 4.30
3841 4705 1.126329 ATCGATCTGCCATGCCCTCT 61.126 55.000 0.00 0.00 0.00 3.69
3842 4706 1.301558 CGATCTGCCATGCCCTCTC 60.302 63.158 0.00 0.00 0.00 3.20
3843 4707 1.834996 GATCTGCCATGCCCTCTCA 59.165 57.895 0.00 0.00 0.00 3.27
3844 4708 0.400975 GATCTGCCATGCCCTCTCAT 59.599 55.000 0.00 0.00 0.00 2.90
3845 4709 0.400975 ATCTGCCATGCCCTCTCATC 59.599 55.000 0.00 0.00 0.00 2.92
3846 4710 0.984432 TCTGCCATGCCCTCTCATCA 60.984 55.000 0.00 0.00 0.00 3.07
3847 4711 0.110678 CTGCCATGCCCTCTCATCAT 59.889 55.000 0.00 0.00 0.00 2.45
3848 4712 1.350019 CTGCCATGCCCTCTCATCATA 59.650 52.381 0.00 0.00 0.00 2.15
3849 4713 1.990327 TGCCATGCCCTCTCATCATAT 59.010 47.619 0.00 0.00 0.00 1.78
3850 4714 3.183801 TGCCATGCCCTCTCATCATATA 58.816 45.455 0.00 0.00 0.00 0.86
3851 4715 3.588396 TGCCATGCCCTCTCATCATATAA 59.412 43.478 0.00 0.00 0.00 0.98
3852 4716 3.944015 GCCATGCCCTCTCATCATATAAC 59.056 47.826 0.00 0.00 0.00 1.89
3853 4717 4.566278 GCCATGCCCTCTCATCATATAACA 60.566 45.833 0.00 0.00 0.00 2.41
3854 4718 5.752650 CCATGCCCTCTCATCATATAACAT 58.247 41.667 0.00 0.00 0.00 2.71
3855 4719 5.821470 CCATGCCCTCTCATCATATAACATC 59.179 44.000 0.00 0.00 0.00 3.06
3856 4720 6.412214 CATGCCCTCTCATCATATAACATCA 58.588 40.000 0.00 0.00 0.00 3.07
3857 4721 6.631763 TGCCCTCTCATCATATAACATCAT 57.368 37.500 0.00 0.00 0.00 2.45
3858 4722 7.738437 TGCCCTCTCATCATATAACATCATA 57.262 36.000 0.00 0.00 0.00 2.15
3859 4723 7.789026 TGCCCTCTCATCATATAACATCATAG 58.211 38.462 0.00 0.00 0.00 2.23
3860 4724 6.705381 GCCCTCTCATCATATAACATCATAGC 59.295 42.308 0.00 0.00 0.00 2.97
3861 4725 7.634429 GCCCTCTCATCATATAACATCATAGCA 60.634 40.741 0.00 0.00 0.00 3.49
3862 4726 8.430431 CCCTCTCATCATATAACATCATAGCAT 58.570 37.037 0.00 0.00 0.00 3.79
3863 4727 9.478768 CCTCTCATCATATAACATCATAGCATC 57.521 37.037 0.00 0.00 0.00 3.91
3864 4728 9.478768 CTCTCATCATATAACATCATAGCATCC 57.521 37.037 0.00 0.00 0.00 3.51
3865 4729 8.984855 TCTCATCATATAACATCATAGCATCCA 58.015 33.333 0.00 0.00 0.00 3.41
3866 4730 9.609346 CTCATCATATAACATCATAGCATCCAA 57.391 33.333 0.00 0.00 0.00 3.53
3867 4731 9.962809 TCATCATATAACATCATAGCATCCAAA 57.037 29.630 0.00 0.00 0.00 3.28
3868 4732 9.999009 CATCATATAACATCATAGCATCCAAAC 57.001 33.333 0.00 0.00 0.00 2.93
3869 4733 9.743581 ATCATATAACATCATAGCATCCAAACA 57.256 29.630 0.00 0.00 0.00 2.83
3870 4734 9.743581 TCATATAACATCATAGCATCCAAACAT 57.256 29.630 0.00 0.00 0.00 2.71
3885 4749 9.248291 GCATCCAAACATAATATTACAAGTTGG 57.752 33.333 7.96 16.10 0.00 3.77
3895 4759 7.582667 AATATTACAAGTTGGTAAGATGGGC 57.417 36.000 7.96 0.00 35.86 5.36
3896 4760 2.969821 ACAAGTTGGTAAGATGGGCA 57.030 45.000 7.96 0.00 0.00 5.36
3897 4761 2.795329 ACAAGTTGGTAAGATGGGCAG 58.205 47.619 7.96 0.00 0.00 4.85
3898 4762 2.094675 CAAGTTGGTAAGATGGGCAGG 58.905 52.381 0.00 0.00 0.00 4.85
3899 4763 1.668826 AGTTGGTAAGATGGGCAGGA 58.331 50.000 0.00 0.00 0.00 3.86
3900 4764 1.561542 AGTTGGTAAGATGGGCAGGAG 59.438 52.381 0.00 0.00 0.00 3.69
3901 4765 1.559682 GTTGGTAAGATGGGCAGGAGA 59.440 52.381 0.00 0.00 0.00 3.71
3902 4766 1.500474 TGGTAAGATGGGCAGGAGAG 58.500 55.000 0.00 0.00 0.00 3.20
3903 4767 0.761802 GGTAAGATGGGCAGGAGAGG 59.238 60.000 0.00 0.00 0.00 3.69
3904 4768 1.692762 GGTAAGATGGGCAGGAGAGGA 60.693 57.143 0.00 0.00 0.00 3.71
3905 4769 1.414550 GTAAGATGGGCAGGAGAGGAC 59.585 57.143 0.00 0.00 0.00 3.85
3906 4770 0.252881 AAGATGGGCAGGAGAGGACA 60.253 55.000 0.00 0.00 0.00 4.02
3907 4771 0.980231 AGATGGGCAGGAGAGGACAC 60.980 60.000 0.00 0.00 0.00 3.67
3908 4772 1.229625 ATGGGCAGGAGAGGACACA 60.230 57.895 0.00 0.00 0.00 3.72
3909 4773 1.270414 ATGGGCAGGAGAGGACACAG 61.270 60.000 0.00 0.00 0.00 3.66
3910 4774 1.610673 GGGCAGGAGAGGACACAGA 60.611 63.158 0.00 0.00 0.00 3.41
3911 4775 1.612395 GGGCAGGAGAGGACACAGAG 61.612 65.000 0.00 0.00 0.00 3.35
3912 4776 1.217779 GCAGGAGAGGACACAGAGC 59.782 63.158 0.00 0.00 0.00 4.09
3913 4777 1.539560 GCAGGAGAGGACACAGAGCA 61.540 60.000 0.00 0.00 0.00 4.26
3914 4778 0.972134 CAGGAGAGGACACAGAGCAA 59.028 55.000 0.00 0.00 0.00 3.91
3915 4779 1.554160 CAGGAGAGGACACAGAGCAAT 59.446 52.381 0.00 0.00 0.00 3.56
3916 4780 2.762887 CAGGAGAGGACACAGAGCAATA 59.237 50.000 0.00 0.00 0.00 1.90
3917 4781 3.030291 AGGAGAGGACACAGAGCAATAG 58.970 50.000 0.00 0.00 0.00 1.73
3918 4782 3.027412 GGAGAGGACACAGAGCAATAGA 58.973 50.000 0.00 0.00 0.00 1.98
3919 4783 3.449018 GGAGAGGACACAGAGCAATAGAA 59.551 47.826 0.00 0.00 0.00 2.10
3920 4784 4.429108 GAGAGGACACAGAGCAATAGAAC 58.571 47.826 0.00 0.00 0.00 3.01
3921 4785 3.834813 AGAGGACACAGAGCAATAGAACA 59.165 43.478 0.00 0.00 0.00 3.18
3922 4786 3.929610 GAGGACACAGAGCAATAGAACAC 59.070 47.826 0.00 0.00 0.00 3.32
3923 4787 3.003480 GGACACAGAGCAATAGAACACC 58.997 50.000 0.00 0.00 0.00 4.16
3924 4788 3.557054 GGACACAGAGCAATAGAACACCA 60.557 47.826 0.00 0.00 0.00 4.17
3925 4789 3.403038 ACACAGAGCAATAGAACACCAC 58.597 45.455 0.00 0.00 0.00 4.16
3926 4790 2.744202 CACAGAGCAATAGAACACCACC 59.256 50.000 0.00 0.00 0.00 4.61
3927 4791 2.290323 ACAGAGCAATAGAACACCACCC 60.290 50.000 0.00 0.00 0.00 4.61
3928 4792 2.026822 CAGAGCAATAGAACACCACCCT 60.027 50.000 0.00 0.00 0.00 4.34
3929 4793 2.237392 AGAGCAATAGAACACCACCCTC 59.763 50.000 0.00 0.00 0.00 4.30
3930 4794 1.985159 AGCAATAGAACACCACCCTCA 59.015 47.619 0.00 0.00 0.00 3.86
3931 4795 2.375174 AGCAATAGAACACCACCCTCAA 59.625 45.455 0.00 0.00 0.00 3.02
3932 4796 3.153919 GCAATAGAACACCACCCTCAAA 58.846 45.455 0.00 0.00 0.00 2.69
3933 4797 3.572255 GCAATAGAACACCACCCTCAAAA 59.428 43.478 0.00 0.00 0.00 2.44
3934 4798 4.558697 GCAATAGAACACCACCCTCAAAAC 60.559 45.833 0.00 0.00 0.00 2.43
3935 4799 4.724279 ATAGAACACCACCCTCAAAACT 57.276 40.909 0.00 0.00 0.00 2.66
3936 4800 2.654863 AGAACACCACCCTCAAAACTG 58.345 47.619 0.00 0.00 0.00 3.16
3937 4801 1.681264 GAACACCACCCTCAAAACTGG 59.319 52.381 0.00 0.00 0.00 4.00
3942 4806 4.617200 CCCTCAAAACTGGGGCAA 57.383 55.556 0.00 0.00 39.76 4.52
3943 4807 2.833244 CCCTCAAAACTGGGGCAAA 58.167 52.632 0.00 0.00 39.76 3.68
3944 4808 0.681175 CCCTCAAAACTGGGGCAAAG 59.319 55.000 0.00 0.00 39.76 2.77
3945 4809 1.703411 CCTCAAAACTGGGGCAAAGA 58.297 50.000 0.00 0.00 0.00 2.52
3946 4810 1.615392 CCTCAAAACTGGGGCAAAGAG 59.385 52.381 0.00 0.00 0.00 2.85
3947 4811 2.586425 CTCAAAACTGGGGCAAAGAGA 58.414 47.619 0.00 0.00 0.00 3.10
3948 4812 2.555757 CTCAAAACTGGGGCAAAGAGAG 59.444 50.000 0.00 0.00 0.00 3.20
3949 4813 2.174639 TCAAAACTGGGGCAAAGAGAGA 59.825 45.455 0.00 0.00 0.00 3.10
3950 4814 2.555757 CAAAACTGGGGCAAAGAGAGAG 59.444 50.000 0.00 0.00 0.00 3.20
3951 4815 0.695347 AACTGGGGCAAAGAGAGAGG 59.305 55.000 0.00 0.00 0.00 3.69
3952 4816 1.204113 ACTGGGGCAAAGAGAGAGGG 61.204 60.000 0.00 0.00 0.00 4.30
3953 4817 2.273776 GGGGCAAAGAGAGAGGGC 59.726 66.667 0.00 0.00 0.00 5.19
3954 4818 2.304831 GGGGCAAAGAGAGAGGGCT 61.305 63.158 0.00 0.00 0.00 5.19
3955 4819 1.223211 GGGCAAAGAGAGAGGGCTC 59.777 63.158 0.00 0.00 41.62 4.70
3967 4831 3.111265 AGGGCTCTCCTTTGGATGT 57.889 52.632 0.00 0.00 45.47 3.06
3968 4832 0.622665 AGGGCTCTCCTTTGGATGTG 59.377 55.000 0.00 0.00 45.47 3.21
3969 4833 0.329596 GGGCTCTCCTTTGGATGTGT 59.670 55.000 0.00 0.00 0.00 3.72
3970 4834 1.272147 GGGCTCTCCTTTGGATGTGTT 60.272 52.381 0.00 0.00 0.00 3.32
3971 4835 2.519013 GGCTCTCCTTTGGATGTGTTT 58.481 47.619 0.00 0.00 0.00 2.83
3972 4836 2.229784 GGCTCTCCTTTGGATGTGTTTG 59.770 50.000 0.00 0.00 0.00 2.93
3973 4837 2.229784 GCTCTCCTTTGGATGTGTTTGG 59.770 50.000 0.00 0.00 0.00 3.28
3974 4838 2.229784 CTCTCCTTTGGATGTGTTTGGC 59.770 50.000 0.00 0.00 0.00 4.52
3975 4839 0.958091 TCCTTTGGATGTGTTTGGCG 59.042 50.000 0.00 0.00 0.00 5.69
3976 4840 0.958091 CCTTTGGATGTGTTTGGCGA 59.042 50.000 0.00 0.00 0.00 5.54
3977 4841 1.335872 CCTTTGGATGTGTTTGGCGAC 60.336 52.381 0.00 0.00 0.00 5.19
3978 4842 0.671251 TTTGGATGTGTTTGGCGACC 59.329 50.000 0.00 0.00 0.00 4.79
3979 4843 0.179004 TTGGATGTGTTTGGCGACCT 60.179 50.000 0.00 0.00 0.00 3.85
3980 4844 0.179004 TGGATGTGTTTGGCGACCTT 60.179 50.000 0.00 0.00 0.00 3.50
3981 4845 0.240945 GGATGTGTTTGGCGACCTTG 59.759 55.000 0.00 0.00 0.00 3.61
3982 4846 0.240945 GATGTGTTTGGCGACCTTGG 59.759 55.000 0.00 0.00 0.00 3.61
3983 4847 0.467290 ATGTGTTTGGCGACCTTGGT 60.467 50.000 0.00 0.00 0.00 3.67
3984 4848 1.098712 TGTGTTTGGCGACCTTGGTC 61.099 55.000 9.62 9.62 0.00 4.02
3985 4849 0.818040 GTGTTTGGCGACCTTGGTCT 60.818 55.000 16.60 0.00 0.00 3.85
3986 4850 0.534203 TGTTTGGCGACCTTGGTCTC 60.534 55.000 16.60 9.45 0.00 3.36
3987 4851 1.301401 TTTGGCGACCTTGGTCTCG 60.301 57.895 16.60 7.29 0.00 4.04
3988 4852 2.035237 TTTGGCGACCTTGGTCTCGT 62.035 55.000 16.60 0.00 32.30 4.18
3989 4853 2.035237 TTGGCGACCTTGGTCTCGTT 62.035 55.000 16.60 0.00 32.30 3.85
3990 4854 1.180456 TGGCGACCTTGGTCTCGTTA 61.180 55.000 16.60 0.00 32.30 3.18
3991 4855 0.458025 GGCGACCTTGGTCTCGTTAG 60.458 60.000 16.60 2.63 32.30 2.34
3992 4856 0.458025 GCGACCTTGGTCTCGTTAGG 60.458 60.000 16.60 1.99 32.30 2.69
3993 4857 1.171308 CGACCTTGGTCTCGTTAGGA 58.829 55.000 16.60 0.00 0.00 2.94
3994 4858 1.135460 CGACCTTGGTCTCGTTAGGAC 60.135 57.143 16.60 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 81 2.419739 GGGTCGAGGAGCTCCAGAC 61.420 68.421 34.80 34.80 41.78 3.51
121 153 2.364842 GGAGGAGGAGGCTGCAGA 60.365 66.667 20.43 0.00 0.00 4.26
155 190 4.087892 GCCCAGCCGAGCAGAGAA 62.088 66.667 0.00 0.00 0.00 2.87
214 249 0.458025 GGCTTTCGTACCACCGAGAG 60.458 60.000 0.00 0.00 40.79 3.20
325 360 7.813148 CCTAAACTACTGATTCAGAAAACGAGA 59.187 37.037 20.33 0.00 35.18 4.04
340 379 4.443598 GCCTGAGGGATTCCTAAACTACTG 60.444 50.000 0.00 0.00 45.05 2.74
414 453 7.502561 ACATTAATAAGGCAAGACATCCCTAAC 59.497 37.037 0.00 0.00 0.00 2.34
462 501 2.297033 TCCAGCAAGCACAAGATTTTCC 59.703 45.455 0.00 0.00 0.00 3.13
464 503 3.863400 GCATCCAGCAAGCACAAGATTTT 60.863 43.478 0.00 0.00 44.79 1.82
540 597 6.051179 ACCTTTGGGCTAGAAGTAAACTAG 57.949 41.667 0.00 0.00 39.92 2.57
559 616 1.501604 TCCCCAAAGCCTTGTTACCTT 59.498 47.619 0.00 0.00 0.00 3.50
590 647 5.529289 TCAACCCTATCTAAGATGTGACCT 58.471 41.667 0.00 0.00 0.00 3.85
644 701 4.365514 AGACAATGGTCCATGTACAACA 57.634 40.909 4.74 0.00 45.48 3.33
649 706 6.480763 ACACATTAAGACAATGGTCCATGTA 58.519 36.000 4.74 0.00 45.48 2.29
656 713 7.315142 CAGCAAATACACATTAAGACAATGGT 58.685 34.615 2.38 0.78 32.14 3.55
661 718 5.009631 AGCCAGCAAATACACATTAAGACA 58.990 37.500 0.00 0.00 0.00 3.41
685 742 9.455847 GAATATGTAAAATTTTCTGGCTAGCAG 57.544 33.333 18.24 12.04 0.00 4.24
687 744 9.237846 GTGAATATGTAAAATTTTCTGGCTAGC 57.762 33.333 6.72 6.04 0.00 3.42
700 757 5.878116 CCTCCAACCTCGTGAATATGTAAAA 59.122 40.000 0.00 0.00 0.00 1.52
707 764 2.434336 CCATCCTCCAACCTCGTGAATA 59.566 50.000 0.00 0.00 0.00 1.75
793 862 2.693864 ACTGATGGCTGGGAGGGG 60.694 66.667 0.00 0.00 0.00 4.79
821 890 3.565307 TGCCATAATGGACCTGGAAATC 58.435 45.455 0.00 0.00 40.96 2.17
954 1060 4.541779 GATCTGCGTACATAGAACAGAGG 58.458 47.826 0.00 0.00 40.45 3.69
1016 1122 1.129998 GCTGCTGCATATTGCTATCCG 59.870 52.381 11.11 0.00 45.31 4.18
1038 1144 2.117206 GGTGGTGCCATTGGGACA 59.883 61.111 26.15 11.59 46.07 4.02
1379 1493 0.694771 AATGCAGAGAGGCTGGTTCA 59.305 50.000 0.00 0.00 45.03 3.18
1410 1524 7.076566 AGGGATTATAGGAACCTAGTCTTACCT 59.923 40.741 6.72 6.80 31.45 3.08
1493 1607 2.793278 ATATGTGAGTCGCATACGCA 57.207 45.000 24.89 8.70 39.22 5.24
1497 1611 7.739498 TGTAGAGTTATATGTGAGTCGCATA 57.261 36.000 24.67 24.67 40.40 3.14
1501 1615 9.561270 CCATAATGTAGAGTTATATGTGAGTCG 57.439 37.037 0.00 0.00 0.00 4.18
2026 2761 5.163764 CGCAGAAGCCACAAATACAAAGATA 60.164 40.000 0.00 0.00 37.52 1.98
2201 2943 2.494059 CCCACAAGTCAACACCAGTAG 58.506 52.381 0.00 0.00 0.00 2.57
2207 2949 0.814457 TTGTGCCCACAAGTCAACAC 59.186 50.000 9.61 0.00 45.42 3.32
2287 3029 2.233922 CCTACCCAGTTACTGACAGTGG 59.766 54.545 18.58 12.35 32.44 4.00
2306 3048 5.964477 TCTCCACTATGATAACCTTTGTCCT 59.036 40.000 0.00 0.00 0.00 3.85
2638 3417 5.615289 ACCATCAGATTATCAACTACCAGC 58.385 41.667 0.00 0.00 0.00 4.85
2678 3461 3.424962 GCCGATACTGTCAAAACAAGAGC 60.425 47.826 0.00 0.00 34.24 4.09
2774 3557 0.471617 CCTCCCTCCGCAGATTGAAT 59.528 55.000 0.00 0.00 0.00 2.57
2940 3729 2.479650 GTCGTCGTCGTCTGAGGG 59.520 66.667 1.33 0.00 38.33 4.30
2947 3736 3.771491 CCTCGTCGTCGTCGTCGT 61.771 66.667 18.44 0.00 45.27 4.34
2948 3737 4.495939 CCCTCGTCGTCGTCGTCG 62.496 72.222 14.18 14.18 46.06 5.12
3019 3808 0.606604 TCCAGGAACGGCAGTAGTTC 59.393 55.000 0.00 0.89 45.16 3.01
3030 3823 8.738645 AGTGATGAAAAGTAATATCCAGGAAC 57.261 34.615 0.00 0.00 0.00 3.62
3072 3918 2.357050 CCTGATGTTAGTTCATGCCCCA 60.357 50.000 0.00 0.00 0.00 4.96
3094 3940 7.744715 CCAAGTCTATTACTACAAAAACAAGCG 59.255 37.037 0.00 0.00 37.50 4.68
3149 3998 1.394618 AAACAAACTAACAGGGCGCA 58.605 45.000 10.83 0.00 0.00 6.09
3222 4071 0.689745 CCCCATCTACCGTCCAGGAA 60.690 60.000 0.00 0.00 45.00 3.36
3243 4104 2.202518 CAAGAAGCCAATGCGCCG 60.203 61.111 4.18 0.00 44.33 6.46
3276 4137 4.458989 GTCATCAGGAAAAGGTGCATAACA 59.541 41.667 0.00 0.00 0.00 2.41
3277 4138 4.458989 TGTCATCAGGAAAAGGTGCATAAC 59.541 41.667 0.00 0.00 0.00 1.89
3283 4144 2.165030 GCCATGTCATCAGGAAAAGGTG 59.835 50.000 0.00 0.00 0.00 4.00
3323 4184 6.530019 AAGCAAAGAGAGGAAGAAAACAAA 57.470 33.333 0.00 0.00 0.00 2.83
3325 4186 5.679638 GCAAAGCAAAGAGAGGAAGAAAACA 60.680 40.000 0.00 0.00 0.00 2.83
3334 4195 2.228343 CCTCAAGCAAAGCAAAGAGAGG 59.772 50.000 0.00 0.00 35.90 3.69
3335 4196 2.351544 GCCTCAAGCAAAGCAAAGAGAG 60.352 50.000 0.00 0.00 42.97 3.20
3366 4227 8.573035 ACGAAACAAATAAACATTAGGTGATGT 58.427 29.630 0.00 0.00 41.83 3.06
3382 4243 9.659830 GTTTGACAGACTAATTACGAAACAAAT 57.340 29.630 0.00 0.00 0.00 2.32
3404 4265 5.953777 CGATCGAGTTCACACATTATGTTTG 59.046 40.000 10.26 5.23 40.64 2.93
3416 4277 2.810650 ACATTAGGCGATCGAGTTCAC 58.189 47.619 21.57 0.00 0.00 3.18
3442 4303 9.403110 CAAAAAGAAACATAAGGTGATGAGAAG 57.597 33.333 0.00 0.00 0.00 2.85
3446 4307 7.831691 TCCAAAAAGAAACATAAGGTGATGA 57.168 32.000 0.00 0.00 0.00 2.92
3447 4308 7.063780 GCATCCAAAAAGAAACATAAGGTGATG 59.936 37.037 0.00 0.00 0.00 3.07
3448 4309 7.099120 GCATCCAAAAAGAAACATAAGGTGAT 58.901 34.615 0.00 0.00 0.00 3.06
3478 4339 1.699083 TCTGATGCTCACAGGAACCAA 59.301 47.619 0.00 0.00 36.22 3.67
3480 4341 2.093288 TCATCTGATGCTCACAGGAACC 60.093 50.000 12.78 0.00 36.22 3.62
3482 4343 3.262660 AGTTCATCTGATGCTCACAGGAA 59.737 43.478 12.78 0.00 36.22 3.36
3517 4378 3.653539 ATAAACGAAACCCACCAAAGC 57.346 42.857 0.00 0.00 0.00 3.51
3561 4422 6.071391 ACGGGATTGAAATGCTATTTCTTGTT 60.071 34.615 16.99 5.32 0.00 2.83
3563 4424 5.745294 CACGGGATTGAAATGCTATTTCTTG 59.255 40.000 16.99 7.68 0.00 3.02
3572 4433 2.368655 AAAGCACGGGATTGAAATGC 57.631 45.000 0.00 0.00 36.52 3.56
3573 4434 3.652274 ACAAAAGCACGGGATTGAAATG 58.348 40.909 0.00 0.00 0.00 2.32
3576 4437 2.302260 TGACAAAAGCACGGGATTGAA 58.698 42.857 0.00 0.00 0.00 2.69
3577 4438 1.974265 TGACAAAAGCACGGGATTGA 58.026 45.000 0.00 0.00 0.00 2.57
3578 4439 2.223688 TGTTGACAAAAGCACGGGATTG 60.224 45.455 0.00 0.00 0.00 2.67
3579 4440 2.028130 TGTTGACAAAAGCACGGGATT 58.972 42.857 0.00 0.00 0.00 3.01
3582 4445 1.066908 ACATGTTGACAAAAGCACGGG 59.933 47.619 0.00 0.00 0.00 5.28
3671 4535 9.746457 TGAGACATATACTCTTCATATGCTAGT 57.254 33.333 0.00 4.00 39.12 2.57
3686 4550 7.201705 GGGCCAAGTAAAAACTGAGACATATAC 60.202 40.741 4.39 0.00 0.00 1.47
3687 4551 6.826741 GGGCCAAGTAAAAACTGAGACATATA 59.173 38.462 4.39 0.00 0.00 0.86
3688 4552 5.652452 GGGCCAAGTAAAAACTGAGACATAT 59.348 40.000 4.39 0.00 0.00 1.78
3689 4553 5.007682 GGGCCAAGTAAAAACTGAGACATA 58.992 41.667 4.39 0.00 0.00 2.29
3690 4554 3.826729 GGGCCAAGTAAAAACTGAGACAT 59.173 43.478 4.39 0.00 0.00 3.06
3691 4555 3.219281 GGGCCAAGTAAAAACTGAGACA 58.781 45.455 4.39 0.00 0.00 3.41
3692 4556 3.219281 TGGGCCAAGTAAAAACTGAGAC 58.781 45.455 2.13 0.00 0.00 3.36
3693 4557 3.586470 TGGGCCAAGTAAAAACTGAGA 57.414 42.857 2.13 0.00 0.00 3.27
3694 4558 4.871933 ATTGGGCCAAGTAAAAACTGAG 57.128 40.909 25.16 0.00 0.00 3.35
3695 4559 5.011227 GGTAATTGGGCCAAGTAAAAACTGA 59.989 40.000 26.25 2.63 0.00 3.41
3696 4560 5.011635 AGGTAATTGGGCCAAGTAAAAACTG 59.988 40.000 26.25 0.00 0.00 3.16
3697 4561 5.152193 AGGTAATTGGGCCAAGTAAAAACT 58.848 37.500 26.25 18.33 0.00 2.66
3698 4562 5.011227 TGAGGTAATTGGGCCAAGTAAAAAC 59.989 40.000 26.25 16.96 0.00 2.43
3699 4563 5.148502 TGAGGTAATTGGGCCAAGTAAAAA 58.851 37.500 26.25 10.98 0.00 1.94
3700 4564 4.742012 TGAGGTAATTGGGCCAAGTAAAA 58.258 39.130 26.25 5.76 0.00 1.52
3701 4565 4.390129 TGAGGTAATTGGGCCAAGTAAA 57.610 40.909 26.25 6.54 0.00 2.01
3702 4566 4.390129 TTGAGGTAATTGGGCCAAGTAA 57.610 40.909 26.25 11.10 0.00 2.24
3703 4567 4.083565 GTTTGAGGTAATTGGGCCAAGTA 58.916 43.478 25.16 23.31 0.00 2.24
3704 4568 2.897326 GTTTGAGGTAATTGGGCCAAGT 59.103 45.455 25.16 24.49 0.00 3.16
3705 4569 2.094752 CGTTTGAGGTAATTGGGCCAAG 60.095 50.000 25.16 2.10 0.00 3.61
3706 4570 1.889829 CGTTTGAGGTAATTGGGCCAA 59.110 47.619 23.33 23.33 0.00 4.52
3707 4571 1.074084 TCGTTTGAGGTAATTGGGCCA 59.926 47.619 0.00 0.00 0.00 5.36
3708 4572 1.471287 GTCGTTTGAGGTAATTGGGCC 59.529 52.381 0.00 0.00 0.00 5.80
3709 4573 2.095415 GTGTCGTTTGAGGTAATTGGGC 60.095 50.000 0.00 0.00 0.00 5.36
3710 4574 3.142951 TGTGTCGTTTGAGGTAATTGGG 58.857 45.455 0.00 0.00 0.00 4.12
3711 4575 4.274950 ACTTGTGTCGTTTGAGGTAATTGG 59.725 41.667 0.00 0.00 0.00 3.16
3712 4576 5.418310 ACTTGTGTCGTTTGAGGTAATTG 57.582 39.130 0.00 0.00 0.00 2.32
3713 4577 6.445357 AAACTTGTGTCGTTTGAGGTAATT 57.555 33.333 0.00 0.00 33.64 1.40
3714 4578 6.445357 AAAACTTGTGTCGTTTGAGGTAAT 57.555 33.333 0.00 0.00 35.00 1.89
3715 4579 5.883503 AAAACTTGTGTCGTTTGAGGTAA 57.116 34.783 0.00 0.00 35.00 2.85
3716 4580 5.883503 AAAAACTTGTGTCGTTTGAGGTA 57.116 34.783 0.00 0.00 35.00 3.08
3717 4581 4.776795 AAAAACTTGTGTCGTTTGAGGT 57.223 36.364 0.00 0.00 35.00 3.85
3746 4610 8.244113 GGTTAATTCGGTGAATGATCTCTTTTT 58.756 33.333 0.00 0.00 32.14 1.94
3747 4611 7.611855 AGGTTAATTCGGTGAATGATCTCTTTT 59.388 33.333 0.00 0.00 32.14 2.27
3748 4612 7.112779 AGGTTAATTCGGTGAATGATCTCTTT 58.887 34.615 0.00 0.00 32.14 2.52
3749 4613 6.653989 AGGTTAATTCGGTGAATGATCTCTT 58.346 36.000 0.00 0.00 32.14 2.85
3750 4614 6.240549 AGGTTAATTCGGTGAATGATCTCT 57.759 37.500 0.00 0.00 32.14 3.10
3751 4615 5.467063 GGAGGTTAATTCGGTGAATGATCTC 59.533 44.000 0.00 7.42 32.14 2.75
3752 4616 5.368989 GGAGGTTAATTCGGTGAATGATCT 58.631 41.667 0.00 0.00 32.14 2.75
3753 4617 4.515567 GGGAGGTTAATTCGGTGAATGATC 59.484 45.833 0.00 0.00 32.14 2.92
3754 4618 4.166144 AGGGAGGTTAATTCGGTGAATGAT 59.834 41.667 0.00 0.00 32.14 2.45
3755 4619 3.521937 AGGGAGGTTAATTCGGTGAATGA 59.478 43.478 0.00 0.00 32.14 2.57
3756 4620 3.627577 CAGGGAGGTTAATTCGGTGAATG 59.372 47.826 0.00 0.00 32.14 2.67
3757 4621 3.265995 ACAGGGAGGTTAATTCGGTGAAT 59.734 43.478 0.00 0.00 33.25 2.57
3758 4622 2.640826 ACAGGGAGGTTAATTCGGTGAA 59.359 45.455 0.00 0.00 0.00 3.18
3759 4623 2.262637 ACAGGGAGGTTAATTCGGTGA 58.737 47.619 0.00 0.00 0.00 4.02
3760 4624 2.781681 ACAGGGAGGTTAATTCGGTG 57.218 50.000 0.00 0.00 0.00 4.94
3761 4625 2.026542 GGAACAGGGAGGTTAATTCGGT 60.027 50.000 0.00 0.00 0.00 4.69
3762 4626 2.026636 TGGAACAGGGAGGTTAATTCGG 60.027 50.000 0.00 0.00 0.00 4.30
3763 4627 3.343941 TGGAACAGGGAGGTTAATTCG 57.656 47.619 0.00 0.00 0.00 3.34
3786 4650 9.956720 GCTTGCTGTATGTTTAGAATTAATGAT 57.043 29.630 0.00 0.00 0.00 2.45
3787 4651 9.177608 AGCTTGCTGTATGTTTAGAATTAATGA 57.822 29.630 0.00 0.00 0.00 2.57
3788 4652 9.793252 AAGCTTGCTGTATGTTTAGAATTAATG 57.207 29.630 0.00 0.00 0.00 1.90
3793 4657 8.624776 GGATTAAGCTTGCTGTATGTTTAGAAT 58.375 33.333 9.86 0.00 0.00 2.40
3794 4658 7.829211 AGGATTAAGCTTGCTGTATGTTTAGAA 59.171 33.333 9.86 0.00 0.00 2.10
3795 4659 7.338710 AGGATTAAGCTTGCTGTATGTTTAGA 58.661 34.615 9.86 0.00 0.00 2.10
3796 4660 7.559590 AGGATTAAGCTTGCTGTATGTTTAG 57.440 36.000 9.86 0.00 0.00 1.85
3797 4661 7.938140 AAGGATTAAGCTTGCTGTATGTTTA 57.062 32.000 9.86 0.00 0.00 2.01
3798 4662 6.840780 AAGGATTAAGCTTGCTGTATGTTT 57.159 33.333 9.86 0.00 0.00 2.83
3799 4663 7.041780 CGATAAGGATTAAGCTTGCTGTATGTT 60.042 37.037 9.86 0.00 32.17 2.71
3800 4664 6.425114 CGATAAGGATTAAGCTTGCTGTATGT 59.575 38.462 9.86 0.00 32.17 2.29
3801 4665 6.646653 TCGATAAGGATTAAGCTTGCTGTATG 59.353 38.462 9.86 0.00 32.17 2.39
3802 4666 6.759272 TCGATAAGGATTAAGCTTGCTGTAT 58.241 36.000 9.86 0.00 32.17 2.29
3803 4667 6.156748 TCGATAAGGATTAAGCTTGCTGTA 57.843 37.500 9.86 0.00 32.17 2.74
3804 4668 5.023533 TCGATAAGGATTAAGCTTGCTGT 57.976 39.130 9.86 0.00 32.17 4.40
3805 4669 5.931146 AGATCGATAAGGATTAAGCTTGCTG 59.069 40.000 9.86 0.00 32.17 4.41
3806 4670 5.931146 CAGATCGATAAGGATTAAGCTTGCT 59.069 40.000 9.86 0.00 32.17 3.91
3807 4671 5.390356 GCAGATCGATAAGGATTAAGCTTGC 60.390 44.000 9.86 0.00 32.17 4.01
3808 4672 5.121454 GGCAGATCGATAAGGATTAAGCTTG 59.879 44.000 9.86 0.00 32.17 4.01
3809 4673 5.221722 TGGCAGATCGATAAGGATTAAGCTT 60.222 40.000 3.48 3.48 32.17 3.74
3810 4674 4.284490 TGGCAGATCGATAAGGATTAAGCT 59.716 41.667 0.00 0.00 32.17 3.74
3811 4675 4.569943 TGGCAGATCGATAAGGATTAAGC 58.430 43.478 0.00 0.00 32.17 3.09
3812 4676 5.064452 GCATGGCAGATCGATAAGGATTAAG 59.936 44.000 0.00 0.00 32.17 1.85
3813 4677 4.937620 GCATGGCAGATCGATAAGGATTAA 59.062 41.667 0.00 0.00 32.17 1.40
3814 4678 4.507710 GCATGGCAGATCGATAAGGATTA 58.492 43.478 0.00 0.00 33.48 1.75
3815 4679 3.341823 GCATGGCAGATCGATAAGGATT 58.658 45.455 0.00 0.00 0.00 3.01
3816 4680 2.355513 GGCATGGCAGATCGATAAGGAT 60.356 50.000 15.47 0.00 0.00 3.24
3817 4681 1.002430 GGCATGGCAGATCGATAAGGA 59.998 52.381 15.47 0.00 0.00 3.36
3818 4682 1.446907 GGCATGGCAGATCGATAAGG 58.553 55.000 15.47 0.00 0.00 2.69
3819 4683 1.002888 AGGGCATGGCAGATCGATAAG 59.997 52.381 22.06 0.00 0.00 1.73
3820 4684 1.002430 GAGGGCATGGCAGATCGATAA 59.998 52.381 22.06 0.00 0.00 1.75
3821 4685 0.610174 GAGGGCATGGCAGATCGATA 59.390 55.000 22.06 0.00 0.00 2.92
3822 4686 1.126329 AGAGGGCATGGCAGATCGAT 61.126 55.000 22.06 0.00 0.00 3.59
3823 4687 1.752358 GAGAGGGCATGGCAGATCGA 61.752 60.000 22.06 0.00 0.00 3.59
3824 4688 1.301558 GAGAGGGCATGGCAGATCG 60.302 63.158 22.06 0.00 0.00 3.69
3825 4689 0.400975 ATGAGAGGGCATGGCAGATC 59.599 55.000 22.06 14.94 0.00 2.75
3826 4690 0.400975 GATGAGAGGGCATGGCAGAT 59.599 55.000 22.06 6.07 0.00 2.90
3827 4691 0.984432 TGATGAGAGGGCATGGCAGA 60.984 55.000 22.06 0.00 0.00 4.26
3828 4692 0.110678 ATGATGAGAGGGCATGGCAG 59.889 55.000 22.06 0.00 0.00 4.85
3829 4693 1.437397 TATGATGAGAGGGCATGGCA 58.563 50.000 22.06 0.00 0.00 4.92
3830 4694 2.803030 ATATGATGAGAGGGCATGGC 57.197 50.000 11.56 11.56 0.00 4.40
3831 4695 5.169992 TGTTATATGATGAGAGGGCATGG 57.830 43.478 0.00 0.00 0.00 3.66
3832 4696 6.412214 TGATGTTATATGATGAGAGGGCATG 58.588 40.000 0.00 0.00 0.00 4.06
3833 4697 6.631763 TGATGTTATATGATGAGAGGGCAT 57.368 37.500 0.00 0.00 0.00 4.40
3834 4698 6.631763 ATGATGTTATATGATGAGAGGGCA 57.368 37.500 0.00 0.00 0.00 5.36
3835 4699 6.705381 GCTATGATGTTATATGATGAGAGGGC 59.295 42.308 0.00 0.00 0.00 5.19
3836 4700 7.789026 TGCTATGATGTTATATGATGAGAGGG 58.211 38.462 0.00 0.00 0.00 4.30
3837 4701 9.478768 GATGCTATGATGTTATATGATGAGAGG 57.521 37.037 0.00 0.00 0.00 3.69
3838 4702 9.478768 GGATGCTATGATGTTATATGATGAGAG 57.521 37.037 0.00 0.00 0.00 3.20
3839 4703 8.984855 TGGATGCTATGATGTTATATGATGAGA 58.015 33.333 0.00 0.00 0.00 3.27
3840 4704 9.609346 TTGGATGCTATGATGTTATATGATGAG 57.391 33.333 0.00 0.00 0.00 2.90
3841 4705 9.962809 TTTGGATGCTATGATGTTATATGATGA 57.037 29.630 0.00 0.00 0.00 2.92
3842 4706 9.999009 GTTTGGATGCTATGATGTTATATGATG 57.001 33.333 0.00 0.00 0.00 3.07
3843 4707 9.743581 TGTTTGGATGCTATGATGTTATATGAT 57.256 29.630 0.00 0.00 0.00 2.45
3844 4708 9.743581 ATGTTTGGATGCTATGATGTTATATGA 57.256 29.630 0.00 0.00 0.00 2.15
3859 4723 9.248291 CCAACTTGTAATATTATGTTTGGATGC 57.752 33.333 16.03 0.00 0.00 3.91
3869 4733 9.297037 GCCCATCTTACCAACTTGTAATATTAT 57.703 33.333 0.00 0.00 30.75 1.28
3870 4734 8.275758 TGCCCATCTTACCAACTTGTAATATTA 58.724 33.333 0.00 0.00 30.75 0.98
3871 4735 7.122715 TGCCCATCTTACCAACTTGTAATATT 58.877 34.615 0.00 0.00 30.75 1.28
3872 4736 6.668645 TGCCCATCTTACCAACTTGTAATAT 58.331 36.000 0.00 0.00 30.75 1.28
3873 4737 6.068461 TGCCCATCTTACCAACTTGTAATA 57.932 37.500 0.00 0.00 30.75 0.98
3874 4738 4.929479 TGCCCATCTTACCAACTTGTAAT 58.071 39.130 0.00 0.00 30.75 1.89
3875 4739 4.331968 CTGCCCATCTTACCAACTTGTAA 58.668 43.478 0.00 0.00 0.00 2.41
3876 4740 3.308117 CCTGCCCATCTTACCAACTTGTA 60.308 47.826 0.00 0.00 0.00 2.41
3877 4741 2.555227 CCTGCCCATCTTACCAACTTGT 60.555 50.000 0.00 0.00 0.00 3.16
3878 4742 2.094675 CCTGCCCATCTTACCAACTTG 58.905 52.381 0.00 0.00 0.00 3.16
3879 4743 1.992557 TCCTGCCCATCTTACCAACTT 59.007 47.619 0.00 0.00 0.00 2.66
3880 4744 1.561542 CTCCTGCCCATCTTACCAACT 59.438 52.381 0.00 0.00 0.00 3.16
3881 4745 1.559682 TCTCCTGCCCATCTTACCAAC 59.440 52.381 0.00 0.00 0.00 3.77
3882 4746 1.839994 CTCTCCTGCCCATCTTACCAA 59.160 52.381 0.00 0.00 0.00 3.67
3883 4747 1.500474 CTCTCCTGCCCATCTTACCA 58.500 55.000 0.00 0.00 0.00 3.25
3884 4748 0.761802 CCTCTCCTGCCCATCTTACC 59.238 60.000 0.00 0.00 0.00 2.85
3885 4749 1.414550 GTCCTCTCCTGCCCATCTTAC 59.585 57.143 0.00 0.00 0.00 2.34
3886 4750 1.008327 TGTCCTCTCCTGCCCATCTTA 59.992 52.381 0.00 0.00 0.00 2.10
3887 4751 0.252881 TGTCCTCTCCTGCCCATCTT 60.253 55.000 0.00 0.00 0.00 2.40
3888 4752 0.980231 GTGTCCTCTCCTGCCCATCT 60.980 60.000 0.00 0.00 0.00 2.90
3889 4753 1.267574 TGTGTCCTCTCCTGCCCATC 61.268 60.000 0.00 0.00 0.00 3.51
3890 4754 1.229625 TGTGTCCTCTCCTGCCCAT 60.230 57.895 0.00 0.00 0.00 4.00
3891 4755 1.915266 CTGTGTCCTCTCCTGCCCA 60.915 63.158 0.00 0.00 0.00 5.36
3892 4756 1.610673 TCTGTGTCCTCTCCTGCCC 60.611 63.158 0.00 0.00 0.00 5.36
3893 4757 1.896694 CTCTGTGTCCTCTCCTGCC 59.103 63.158 0.00 0.00 0.00 4.85
3894 4758 1.217779 GCTCTGTGTCCTCTCCTGC 59.782 63.158 0.00 0.00 0.00 4.85
3895 4759 0.972134 TTGCTCTGTGTCCTCTCCTG 59.028 55.000 0.00 0.00 0.00 3.86
3896 4760 1.949799 ATTGCTCTGTGTCCTCTCCT 58.050 50.000 0.00 0.00 0.00 3.69
3897 4761 3.027412 TCTATTGCTCTGTGTCCTCTCC 58.973 50.000 0.00 0.00 0.00 3.71
3898 4762 4.081972 TGTTCTATTGCTCTGTGTCCTCTC 60.082 45.833 0.00 0.00 0.00 3.20
3899 4763 3.834813 TGTTCTATTGCTCTGTGTCCTCT 59.165 43.478 0.00 0.00 0.00 3.69
3900 4764 3.929610 GTGTTCTATTGCTCTGTGTCCTC 59.070 47.826 0.00 0.00 0.00 3.71
3901 4765 3.307059 GGTGTTCTATTGCTCTGTGTCCT 60.307 47.826 0.00 0.00 0.00 3.85
3902 4766 3.003480 GGTGTTCTATTGCTCTGTGTCC 58.997 50.000 0.00 0.00 0.00 4.02
3903 4767 3.433615 GTGGTGTTCTATTGCTCTGTGTC 59.566 47.826 0.00 0.00 0.00 3.67
3904 4768 3.403038 GTGGTGTTCTATTGCTCTGTGT 58.597 45.455 0.00 0.00 0.00 3.72
3905 4769 2.744202 GGTGGTGTTCTATTGCTCTGTG 59.256 50.000 0.00 0.00 0.00 3.66
3906 4770 2.290323 GGGTGGTGTTCTATTGCTCTGT 60.290 50.000 0.00 0.00 0.00 3.41
3907 4771 2.026822 AGGGTGGTGTTCTATTGCTCTG 60.027 50.000 0.00 0.00 0.00 3.35
3908 4772 2.237392 GAGGGTGGTGTTCTATTGCTCT 59.763 50.000 0.00 0.00 0.00 4.09
3909 4773 2.027192 TGAGGGTGGTGTTCTATTGCTC 60.027 50.000 0.00 0.00 0.00 4.26
3910 4774 1.985159 TGAGGGTGGTGTTCTATTGCT 59.015 47.619 0.00 0.00 0.00 3.91
3911 4775 2.489938 TGAGGGTGGTGTTCTATTGC 57.510 50.000 0.00 0.00 0.00 3.56
3912 4776 4.827284 AGTTTTGAGGGTGGTGTTCTATTG 59.173 41.667 0.00 0.00 0.00 1.90
3913 4777 4.827284 CAGTTTTGAGGGTGGTGTTCTATT 59.173 41.667 0.00 0.00 0.00 1.73
3914 4778 4.398319 CAGTTTTGAGGGTGGTGTTCTAT 58.602 43.478 0.00 0.00 0.00 1.98
3915 4779 3.434453 CCAGTTTTGAGGGTGGTGTTCTA 60.434 47.826 0.00 0.00 0.00 2.10
3916 4780 2.654863 CAGTTTTGAGGGTGGTGTTCT 58.345 47.619 0.00 0.00 0.00 3.01
3917 4781 1.681264 CCAGTTTTGAGGGTGGTGTTC 59.319 52.381 0.00 0.00 0.00 3.18
3918 4782 1.687996 CCCAGTTTTGAGGGTGGTGTT 60.688 52.381 0.00 0.00 40.34 3.32
3919 4783 0.106217 CCCAGTTTTGAGGGTGGTGT 60.106 55.000 0.00 0.00 40.34 4.16
3920 4784 0.827507 CCCCAGTTTTGAGGGTGGTG 60.828 60.000 0.00 0.00 43.89 4.17
3921 4785 1.541672 CCCCAGTTTTGAGGGTGGT 59.458 57.895 0.00 0.00 43.89 4.16
3922 4786 1.908299 GCCCCAGTTTTGAGGGTGG 60.908 63.158 0.00 0.00 43.89 4.61
3923 4787 0.758685 TTGCCCCAGTTTTGAGGGTG 60.759 55.000 0.00 0.00 43.89 4.61
3924 4788 0.031616 TTTGCCCCAGTTTTGAGGGT 60.032 50.000 0.00 0.00 43.89 4.34
3925 4789 0.681175 CTTTGCCCCAGTTTTGAGGG 59.319 55.000 0.00 0.00 45.04 4.30
3926 4790 1.615392 CTCTTTGCCCCAGTTTTGAGG 59.385 52.381 0.00 0.00 0.00 3.86
3927 4791 2.555757 CTCTCTTTGCCCCAGTTTTGAG 59.444 50.000 0.00 0.00 0.00 3.02
3928 4792 2.174639 TCTCTCTTTGCCCCAGTTTTGA 59.825 45.455 0.00 0.00 0.00 2.69
3929 4793 2.555757 CTCTCTCTTTGCCCCAGTTTTG 59.444 50.000 0.00 0.00 0.00 2.44
3930 4794 2.489802 CCTCTCTCTTTGCCCCAGTTTT 60.490 50.000 0.00 0.00 0.00 2.43
3931 4795 1.074566 CCTCTCTCTTTGCCCCAGTTT 59.925 52.381 0.00 0.00 0.00 2.66
3932 4796 0.695347 CCTCTCTCTTTGCCCCAGTT 59.305 55.000 0.00 0.00 0.00 3.16
3933 4797 1.204113 CCCTCTCTCTTTGCCCCAGT 61.204 60.000 0.00 0.00 0.00 4.00
3934 4798 1.606531 CCCTCTCTCTTTGCCCCAG 59.393 63.158 0.00 0.00 0.00 4.45
3935 4799 2.606587 GCCCTCTCTCTTTGCCCCA 61.607 63.158 0.00 0.00 0.00 4.96
3936 4800 2.264120 GAGCCCTCTCTCTTTGCCCC 62.264 65.000 0.00 0.00 36.42 5.80
3937 4801 1.223211 GAGCCCTCTCTCTTTGCCC 59.777 63.158 0.00 0.00 36.42 5.36
3938 4802 2.295904 AGAGCCCTCTCTCTTTGCC 58.704 57.895 0.00 0.00 46.32 4.52
3950 4814 0.329596 ACACATCCAAAGGAGAGCCC 59.670 55.000 0.00 0.00 34.05 5.19
3951 4815 2.206576 AACACATCCAAAGGAGAGCC 57.793 50.000 0.00 0.00 34.05 4.70
3952 4816 2.229784 CCAAACACATCCAAAGGAGAGC 59.770 50.000 0.00 0.00 34.05 4.09
3953 4817 2.229784 GCCAAACACATCCAAAGGAGAG 59.770 50.000 0.00 0.00 34.05 3.20
3954 4818 2.238521 GCCAAACACATCCAAAGGAGA 58.761 47.619 0.00 0.00 34.05 3.71
3955 4819 1.068333 CGCCAAACACATCCAAAGGAG 60.068 52.381 0.00 0.00 34.05 3.69
3956 4820 0.958091 CGCCAAACACATCCAAAGGA 59.042 50.000 0.00 0.00 35.55 3.36
3957 4821 0.958091 TCGCCAAACACATCCAAAGG 59.042 50.000 0.00 0.00 0.00 3.11
3958 4822 1.335872 GGTCGCCAAACACATCCAAAG 60.336 52.381 0.00 0.00 0.00 2.77
3959 4823 0.671251 GGTCGCCAAACACATCCAAA 59.329 50.000 0.00 0.00 0.00 3.28
3960 4824 0.179004 AGGTCGCCAAACACATCCAA 60.179 50.000 0.00 0.00 0.00 3.53
3961 4825 0.179004 AAGGTCGCCAAACACATCCA 60.179 50.000 0.00 0.00 0.00 3.41
3962 4826 0.240945 CAAGGTCGCCAAACACATCC 59.759 55.000 0.00 0.00 0.00 3.51
3963 4827 0.240945 CCAAGGTCGCCAAACACATC 59.759 55.000 0.00 0.00 0.00 3.06
3964 4828 0.467290 ACCAAGGTCGCCAAACACAT 60.467 50.000 0.00 0.00 0.00 3.21
3965 4829 1.077357 ACCAAGGTCGCCAAACACA 60.077 52.632 0.00 0.00 0.00 3.72
3966 4830 1.652563 GACCAAGGTCGCCAAACAC 59.347 57.895 3.08 0.00 35.30 3.32
3967 4831 4.150994 GACCAAGGTCGCCAAACA 57.849 55.556 3.08 0.00 35.30 2.83
3975 4839 2.651135 GTCCTAACGAGACCAAGGTC 57.349 55.000 11.29 11.29 44.86 3.85
3987 4851 3.011949 TGAAACACGTACCGTCCTAAC 57.988 47.619 0.00 0.00 38.32 2.34
3988 4852 3.940209 ATGAAACACGTACCGTCCTAA 57.060 42.857 0.00 0.00 38.32 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.