Multiple sequence alignment - TraesCS5D01G346000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G346000 chr5D 100.000 3143 0 0 1 3143 432509964 432506822 0.000000e+00 5805
1 TraesCS5D01G346000 chr5D 94.855 758 34 4 2390 3143 455879389 455878633 0.000000e+00 1179
2 TraesCS5D01G346000 chr5D 94.570 755 34 5 2396 3143 316894224 316893470 0.000000e+00 1160
3 TraesCS5D01G346000 chr5A 91.883 1737 79 22 716 2393 547327296 547325563 0.000000e+00 2370
4 TraesCS5D01G346000 chr5A 88.665 547 56 3 1 544 432934765 432935308 0.000000e+00 662
5 TraesCS5D01G346000 chr5B 88.423 1313 63 37 983 2236 523216360 523217642 0.000000e+00 1500
6 TraesCS5D01G346000 chr3D 95.389 759 27 5 2392 3143 73872025 73871268 0.000000e+00 1201
7 TraesCS5D01G346000 chr3D 88.560 507 51 6 41 544 26442093 26441591 2.680000e-170 608
8 TraesCS5D01G346000 chr3D 87.575 499 56 5 47 544 547930559 547930066 9.780000e-160 573
9 TraesCS5D01G346000 chr3D 87.730 489 42 11 64 546 13188962 13189438 3.540000e-154 555
10 TraesCS5D01G346000 chr3D 87.221 493 50 6 64 545 429313218 429313708 1.650000e-152 549
11 TraesCS5D01G346000 chr7D 95.364 755 29 6 2392 3141 460637919 460638672 0.000000e+00 1195
12 TraesCS5D01G346000 chr7D 94.730 759 29 8 2393 3143 602796516 602795761 0.000000e+00 1170
13 TraesCS5D01G346000 chr7D 89.901 505 47 3 41 543 99419217 99419719 0.000000e+00 647
14 TraesCS5D01G346000 chr7D 87.879 561 51 5 1 546 104636827 104637385 0.000000e+00 643
15 TraesCS5D01G346000 chr7D 87.805 492 47 5 64 544 489109972 489109483 5.880000e-157 564
16 TraesCS5D01G346000 chr7D 83.048 584 52 20 1 545 511938025 511937450 1.310000e-133 486
17 TraesCS5D01G346000 chr7D 85.417 432 51 8 64 485 155728425 155728854 3.720000e-119 438
18 TraesCS5D01G346000 chr7D 83.539 243 19 10 1 222 393598919 393599161 1.140000e-49 207
19 TraesCS5D01G346000 chr2D 95.257 759 28 5 2391 3143 56319963 56319207 0.000000e+00 1195
20 TraesCS5D01G346000 chr2D 94.737 760 31 8 2390 3143 60189188 60189944 0.000000e+00 1173
21 TraesCS5D01G346000 chr2D 91.000 500 41 3 47 544 448526096 448525599 0.000000e+00 671
22 TraesCS5D01G346000 chr2D 86.323 563 60 8 1 549 143494944 143494385 5.800000e-167 597
23 TraesCS5D01G346000 chr6D 94.954 753 35 2 2394 3143 359437200 359437952 0.000000e+00 1177
24 TraesCS5D01G346000 chr6D 94.841 756 33 5 2393 3143 388968270 388967516 0.000000e+00 1175
25 TraesCS5D01G346000 chr3B 93.628 565 26 4 1285 1849 783678604 783678050 0.000000e+00 835
26 TraesCS5D01G346000 chr1D 89.107 560 45 4 2 547 269991451 269992008 0.000000e+00 682
27 TraesCS5D01G346000 chr4A 88.755 498 55 1 47 544 609125917 609125421 2.680000e-170 608
28 TraesCS5D01G346000 chr4D 88.039 510 55 4 41 546 315022677 315023184 1.610000e-167 599
29 TraesCS5D01G346000 chr2B 83.955 268 28 5 693 945 53600041 53600308 3.130000e-60 243
30 TraesCS5D01G346000 chr3A 92.683 164 12 0 64 227 109155339 109155176 1.460000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G346000 chr5D 432506822 432509964 3142 True 5805 5805 100.000 1 3143 1 chr5D.!!$R2 3142
1 TraesCS5D01G346000 chr5D 455878633 455879389 756 True 1179 1179 94.855 2390 3143 1 chr5D.!!$R3 753
2 TraesCS5D01G346000 chr5D 316893470 316894224 754 True 1160 1160 94.570 2396 3143 1 chr5D.!!$R1 747
3 TraesCS5D01G346000 chr5A 547325563 547327296 1733 True 2370 2370 91.883 716 2393 1 chr5A.!!$R1 1677
4 TraesCS5D01G346000 chr5A 432934765 432935308 543 False 662 662 88.665 1 544 1 chr5A.!!$F1 543
5 TraesCS5D01G346000 chr5B 523216360 523217642 1282 False 1500 1500 88.423 983 2236 1 chr5B.!!$F1 1253
6 TraesCS5D01G346000 chr3D 73871268 73872025 757 True 1201 1201 95.389 2392 3143 1 chr3D.!!$R2 751
7 TraesCS5D01G346000 chr3D 26441591 26442093 502 True 608 608 88.560 41 544 1 chr3D.!!$R1 503
8 TraesCS5D01G346000 chr7D 460637919 460638672 753 False 1195 1195 95.364 2392 3141 1 chr7D.!!$F5 749
9 TraesCS5D01G346000 chr7D 602795761 602796516 755 True 1170 1170 94.730 2393 3143 1 chr7D.!!$R3 750
10 TraesCS5D01G346000 chr7D 99419217 99419719 502 False 647 647 89.901 41 543 1 chr7D.!!$F1 502
11 TraesCS5D01G346000 chr7D 104636827 104637385 558 False 643 643 87.879 1 546 1 chr7D.!!$F2 545
12 TraesCS5D01G346000 chr7D 511937450 511938025 575 True 486 486 83.048 1 545 1 chr7D.!!$R2 544
13 TraesCS5D01G346000 chr2D 56319207 56319963 756 True 1195 1195 95.257 2391 3143 1 chr2D.!!$R1 752
14 TraesCS5D01G346000 chr2D 60189188 60189944 756 False 1173 1173 94.737 2390 3143 1 chr2D.!!$F1 753
15 TraesCS5D01G346000 chr2D 143494385 143494944 559 True 597 597 86.323 1 549 1 chr2D.!!$R2 548
16 TraesCS5D01G346000 chr6D 359437200 359437952 752 False 1177 1177 94.954 2394 3143 1 chr6D.!!$F1 749
17 TraesCS5D01G346000 chr6D 388967516 388968270 754 True 1175 1175 94.841 2393 3143 1 chr6D.!!$R1 750
18 TraesCS5D01G346000 chr3B 783678050 783678604 554 True 835 835 93.628 1285 1849 1 chr3B.!!$R1 564
19 TraesCS5D01G346000 chr1D 269991451 269992008 557 False 682 682 89.107 2 547 1 chr1D.!!$F1 545
20 TraesCS5D01G346000 chr4D 315022677 315023184 507 False 599 599 88.039 41 546 1 chr4D.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1005 0.320508 GACGGTGACTTGTCCCTTCC 60.321 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2407 0.816018 TCGCGGGAGAAGCAAACAAA 60.816 50.0 6.13 0.0 34.19 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 453 2.202824 CCGACGCAAATCCGGCTA 60.203 61.111 0.00 0.00 36.62 3.93
427 483 3.781307 CGGGAATGGGTCGGCAGA 61.781 66.667 0.00 0.00 0.00 4.26
549 605 4.019174 CCCATTGGAGTTGCTCTTATTGT 58.981 43.478 3.62 0.00 0.00 2.71
550 606 4.142315 CCCATTGGAGTTGCTCTTATTGTG 60.142 45.833 3.62 0.00 0.00 3.33
551 607 4.460382 CCATTGGAGTTGCTCTTATTGTGT 59.540 41.667 0.00 0.00 0.00 3.72
552 608 5.047802 CCATTGGAGTTGCTCTTATTGTGTT 60.048 40.000 0.00 0.00 0.00 3.32
553 609 6.150976 CCATTGGAGTTGCTCTTATTGTGTTA 59.849 38.462 0.00 0.00 0.00 2.41
554 610 6.801539 TTGGAGTTGCTCTTATTGTGTTAG 57.198 37.500 0.00 0.00 0.00 2.34
555 611 5.245531 TGGAGTTGCTCTTATTGTGTTAGG 58.754 41.667 0.00 0.00 0.00 2.69
556 612 5.012664 TGGAGTTGCTCTTATTGTGTTAGGA 59.987 40.000 0.00 0.00 0.00 2.94
557 613 6.116126 GGAGTTGCTCTTATTGTGTTAGGAT 58.884 40.000 0.00 0.00 0.00 3.24
558 614 6.037610 GGAGTTGCTCTTATTGTGTTAGGATG 59.962 42.308 0.00 0.00 0.00 3.51
559 615 6.476378 AGTTGCTCTTATTGTGTTAGGATGT 58.524 36.000 0.00 0.00 0.00 3.06
560 616 6.372659 AGTTGCTCTTATTGTGTTAGGATGTG 59.627 38.462 0.00 0.00 0.00 3.21
561 617 5.185454 TGCTCTTATTGTGTTAGGATGTGG 58.815 41.667 0.00 0.00 0.00 4.17
562 618 4.035675 GCTCTTATTGTGTTAGGATGTGGC 59.964 45.833 0.00 0.00 0.00 5.01
563 619 5.431765 CTCTTATTGTGTTAGGATGTGGCT 58.568 41.667 0.00 0.00 0.00 4.75
564 620 6.553953 TCTTATTGTGTTAGGATGTGGCTA 57.446 37.500 0.00 0.00 0.00 3.93
565 621 6.582636 TCTTATTGTGTTAGGATGTGGCTAG 58.417 40.000 0.00 0.00 0.00 3.42
566 622 3.627395 TTGTGTTAGGATGTGGCTAGG 57.373 47.619 0.00 0.00 0.00 3.02
567 623 2.546899 TGTGTTAGGATGTGGCTAGGT 58.453 47.619 0.00 0.00 0.00 3.08
568 624 2.500098 TGTGTTAGGATGTGGCTAGGTC 59.500 50.000 0.00 0.00 0.00 3.85
569 625 2.766828 GTGTTAGGATGTGGCTAGGTCT 59.233 50.000 0.00 0.00 0.00 3.85
570 626 2.766263 TGTTAGGATGTGGCTAGGTCTG 59.234 50.000 0.00 0.00 0.00 3.51
571 627 3.031736 GTTAGGATGTGGCTAGGTCTGA 58.968 50.000 0.00 0.00 0.00 3.27
572 628 1.786937 AGGATGTGGCTAGGTCTGAG 58.213 55.000 0.00 0.00 0.00 3.35
573 629 1.289231 AGGATGTGGCTAGGTCTGAGA 59.711 52.381 0.00 0.00 0.00 3.27
574 630 2.090831 AGGATGTGGCTAGGTCTGAGAT 60.091 50.000 0.00 0.00 0.00 2.75
575 631 2.703007 GGATGTGGCTAGGTCTGAGATT 59.297 50.000 0.00 0.00 0.00 2.40
576 632 3.135530 GGATGTGGCTAGGTCTGAGATTT 59.864 47.826 0.00 0.00 0.00 2.17
577 633 4.345257 GGATGTGGCTAGGTCTGAGATTTA 59.655 45.833 0.00 0.00 0.00 1.40
578 634 5.163301 GGATGTGGCTAGGTCTGAGATTTAA 60.163 44.000 0.00 0.00 0.00 1.52
579 635 5.957771 TGTGGCTAGGTCTGAGATTTAAT 57.042 39.130 0.00 0.00 0.00 1.40
580 636 5.918608 TGTGGCTAGGTCTGAGATTTAATC 58.081 41.667 0.00 0.00 0.00 1.75
581 637 5.425217 TGTGGCTAGGTCTGAGATTTAATCA 59.575 40.000 7.74 0.00 0.00 2.57
582 638 6.070251 TGTGGCTAGGTCTGAGATTTAATCAA 60.070 38.462 7.74 0.00 0.00 2.57
583 639 6.823689 GTGGCTAGGTCTGAGATTTAATCAAA 59.176 38.462 7.74 0.00 0.00 2.69
584 640 7.500559 GTGGCTAGGTCTGAGATTTAATCAAAT 59.499 37.037 7.74 0.00 37.06 2.32
639 695 7.603963 AAAAAGTTTAAAAAGTTGCACGGAT 57.396 28.000 0.00 0.00 32.20 4.18
640 696 6.822073 AAAGTTTAAAAAGTTGCACGGATC 57.178 33.333 0.00 0.00 32.20 3.36
641 697 5.767816 AGTTTAAAAAGTTGCACGGATCT 57.232 34.783 0.00 0.00 0.00 2.75
642 698 5.758924 AGTTTAAAAAGTTGCACGGATCTC 58.241 37.500 0.00 0.00 0.00 2.75
643 699 5.298276 AGTTTAAAAAGTTGCACGGATCTCA 59.702 36.000 0.00 0.00 0.00 3.27
644 700 5.759506 TTAAAAAGTTGCACGGATCTCAA 57.240 34.783 0.00 0.00 0.00 3.02
645 701 4.853924 AAAAAGTTGCACGGATCTCAAT 57.146 36.364 0.00 0.00 0.00 2.57
646 702 3.837213 AAAGTTGCACGGATCTCAATG 57.163 42.857 0.00 0.00 0.00 2.82
647 703 2.479566 AGTTGCACGGATCTCAATGT 57.520 45.000 0.00 0.00 0.00 2.71
648 704 3.610040 AGTTGCACGGATCTCAATGTA 57.390 42.857 0.00 0.00 0.00 2.29
649 705 3.937814 AGTTGCACGGATCTCAATGTAA 58.062 40.909 0.00 0.00 0.00 2.41
650 706 3.935203 AGTTGCACGGATCTCAATGTAAG 59.065 43.478 0.00 0.00 0.00 2.34
651 707 3.885724 TGCACGGATCTCAATGTAAGA 57.114 42.857 0.00 0.00 0.00 2.10
652 708 4.406648 TGCACGGATCTCAATGTAAGAT 57.593 40.909 0.00 0.00 36.19 2.40
653 709 4.371786 TGCACGGATCTCAATGTAAGATC 58.628 43.478 4.85 4.85 45.54 2.75
654 710 4.100035 TGCACGGATCTCAATGTAAGATCT 59.900 41.667 11.66 0.00 45.56 2.75
655 711 5.053145 GCACGGATCTCAATGTAAGATCTT 58.947 41.667 13.56 13.56 45.56 2.40
656 712 6.183360 TGCACGGATCTCAATGTAAGATCTTA 60.183 38.462 11.24 11.24 45.56 2.10
657 713 6.144724 GCACGGATCTCAATGTAAGATCTTAC 59.855 42.308 30.61 30.61 45.56 2.34
658 714 6.360947 CACGGATCTCAATGTAAGATCTTACG 59.639 42.308 30.85 20.97 46.19 3.18
659 715 5.859114 CGGATCTCAATGTAAGATCTTACGG 59.141 44.000 30.85 24.30 46.19 4.02
660 716 6.294010 CGGATCTCAATGTAAGATCTTACGGA 60.294 42.308 30.85 26.25 46.19 4.69
661 717 7.575909 CGGATCTCAATGTAAGATCTTACGGAT 60.576 40.741 30.85 26.07 46.19 4.18
662 718 8.740906 GGATCTCAATGTAAGATCTTACGGATA 58.259 37.037 30.85 22.43 46.19 2.59
663 719 9.781834 GATCTCAATGTAAGATCTTACGGATAG 57.218 37.037 30.85 25.27 46.19 2.08
664 720 8.919777 TCTCAATGTAAGATCTTACGGATAGA 57.080 34.615 30.85 26.55 46.19 1.98
665 721 9.004717 TCTCAATGTAAGATCTTACGGATAGAG 57.995 37.037 30.85 28.44 46.19 2.43
666 722 7.594714 TCAATGTAAGATCTTACGGATAGAGC 58.405 38.462 30.85 12.29 46.19 4.09
667 723 7.230712 TCAATGTAAGATCTTACGGATAGAGCA 59.769 37.037 30.85 16.57 46.19 4.26
668 724 7.710676 ATGTAAGATCTTACGGATAGAGCAT 57.289 36.000 30.85 17.77 46.19 3.79
669 725 6.914259 TGTAAGATCTTACGGATAGAGCATG 58.086 40.000 30.85 0.00 46.19 4.06
670 726 6.715264 TGTAAGATCTTACGGATAGAGCATGA 59.285 38.462 30.85 13.11 46.19 3.07
671 727 5.637006 AGATCTTACGGATAGAGCATGAC 57.363 43.478 0.00 0.00 34.33 3.06
672 728 5.321102 AGATCTTACGGATAGAGCATGACT 58.679 41.667 0.00 0.00 34.33 3.41
673 729 4.837896 TCTTACGGATAGAGCATGACTG 57.162 45.455 0.00 0.00 0.00 3.51
674 730 4.461198 TCTTACGGATAGAGCATGACTGA 58.539 43.478 0.00 0.00 0.00 3.41
675 731 4.517075 TCTTACGGATAGAGCATGACTGAG 59.483 45.833 0.00 0.00 0.00 3.35
676 732 2.937519 ACGGATAGAGCATGACTGAGA 58.062 47.619 0.00 0.00 0.00 3.27
677 733 2.621055 ACGGATAGAGCATGACTGAGAC 59.379 50.000 0.00 0.00 0.00 3.36
678 734 2.884012 CGGATAGAGCATGACTGAGACT 59.116 50.000 0.00 0.00 0.00 3.24
679 735 3.317711 CGGATAGAGCATGACTGAGACTT 59.682 47.826 0.00 0.00 0.00 3.01
680 736 4.517075 CGGATAGAGCATGACTGAGACTTA 59.483 45.833 0.00 0.00 0.00 2.24
681 737 5.009110 CGGATAGAGCATGACTGAGACTTAA 59.991 44.000 0.00 0.00 0.00 1.85
682 738 6.212955 GGATAGAGCATGACTGAGACTTAAC 58.787 44.000 0.00 0.00 0.00 2.01
683 739 6.183360 GGATAGAGCATGACTGAGACTTAACA 60.183 42.308 0.00 0.00 0.00 2.41
684 740 5.474578 AGAGCATGACTGAGACTTAACAA 57.525 39.130 0.00 0.00 0.00 2.83
685 741 5.477510 AGAGCATGACTGAGACTTAACAAG 58.522 41.667 0.00 0.00 0.00 3.16
686 742 5.244851 AGAGCATGACTGAGACTTAACAAGA 59.755 40.000 0.00 0.00 0.00 3.02
687 743 5.233988 AGCATGACTGAGACTTAACAAGAC 58.766 41.667 0.00 0.00 0.00 3.01
688 744 5.011533 AGCATGACTGAGACTTAACAAGACT 59.988 40.000 0.00 0.00 36.25 3.24
689 745 5.119898 GCATGACTGAGACTTAACAAGACTG 59.880 44.000 0.00 0.00 33.75 3.51
690 746 6.450545 CATGACTGAGACTTAACAAGACTGA 58.549 40.000 0.00 0.00 33.75 3.41
691 747 6.656632 TGACTGAGACTTAACAAGACTGAT 57.343 37.500 0.00 0.00 33.75 2.90
692 748 7.055667 TGACTGAGACTTAACAAGACTGATT 57.944 36.000 0.00 0.00 33.75 2.57
693 749 6.925718 TGACTGAGACTTAACAAGACTGATTG 59.074 38.462 0.00 0.00 33.75 2.67
694 750 6.821388 ACTGAGACTTAACAAGACTGATTGT 58.179 36.000 0.00 0.00 45.18 2.71
695 751 6.703607 ACTGAGACTTAACAAGACTGATTGTG 59.296 38.462 4.32 0.00 42.49 3.33
696 752 6.582636 TGAGACTTAACAAGACTGATTGTGT 58.417 36.000 4.32 0.00 42.49 3.72
697 753 7.047891 TGAGACTTAACAAGACTGATTGTGTT 58.952 34.615 4.32 0.00 42.49 3.32
698 754 8.201464 TGAGACTTAACAAGACTGATTGTGTTA 58.799 33.333 4.32 0.00 42.49 2.41
699 755 8.958119 AGACTTAACAAGACTGATTGTGTTAA 57.042 30.769 8.44 8.44 42.49 2.01
700 756 8.827677 AGACTTAACAAGACTGATTGTGTTAAC 58.172 33.333 0.00 0.00 42.49 2.01
701 757 7.927048 ACTTAACAAGACTGATTGTGTTAACC 58.073 34.615 2.48 0.00 42.49 2.85
702 758 7.554835 ACTTAACAAGACTGATTGTGTTAACCA 59.445 33.333 2.48 0.00 42.49 3.67
703 759 6.377327 AACAAGACTGATTGTGTTAACCAG 57.623 37.500 2.48 5.29 42.49 4.00
704 760 5.437060 ACAAGACTGATTGTGTTAACCAGT 58.563 37.500 12.47 12.47 41.76 4.00
705 761 6.588204 ACAAGACTGATTGTGTTAACCAGTA 58.412 36.000 12.57 0.00 41.76 2.74
706 762 6.482308 ACAAGACTGATTGTGTTAACCAGTAC 59.518 38.462 12.57 1.47 41.76 2.73
707 763 6.169557 AGACTGATTGTGTTAACCAGTACA 57.830 37.500 12.57 3.88 38.10 2.90
708 764 6.223852 AGACTGATTGTGTTAACCAGTACAG 58.776 40.000 12.57 13.12 38.10 2.74
709 765 5.925509 ACTGATTGTGTTAACCAGTACAGT 58.074 37.500 11.34 13.08 36.44 3.55
710 766 7.014905 AGACTGATTGTGTTAACCAGTACAGTA 59.985 37.037 17.89 0.00 38.10 2.74
711 767 7.502696 ACTGATTGTGTTAACCAGTACAGTAA 58.497 34.615 17.00 1.49 36.44 2.24
712 768 7.988599 ACTGATTGTGTTAACCAGTACAGTAAA 59.011 33.333 17.00 0.00 36.44 2.01
713 769 8.373048 TGATTGTGTTAACCAGTACAGTAAAG 57.627 34.615 2.48 0.00 0.00 1.85
714 770 7.988599 TGATTGTGTTAACCAGTACAGTAAAGT 59.011 33.333 2.48 0.00 0.00 2.66
721 777 6.688637 AACCAGTACAGTAAAGTTGTTTCC 57.311 37.500 0.00 0.00 0.00 3.13
725 781 5.469084 CAGTACAGTAAAGTTGTTTCCCTCC 59.531 44.000 0.00 0.00 0.00 4.30
734 790 2.121506 TTTCCCTCCCTGGCCTGT 60.122 61.111 3.32 0.00 0.00 4.00
741 797 3.016971 CCCTGGCCTGTGGGATCA 61.017 66.667 19.93 0.00 46.15 2.92
749 806 1.302285 CTGTGGGATCAGCTTGGCT 59.698 57.895 0.00 0.00 40.77 4.75
769 826 3.309582 TCCATGGAGGAAGCGGAC 58.690 61.111 11.44 0.00 45.65 4.79
770 827 1.612146 TCCATGGAGGAAGCGGACA 60.612 57.895 11.44 0.00 45.65 4.02
771 828 0.982852 TCCATGGAGGAAGCGGACAT 60.983 55.000 11.44 0.00 45.65 3.06
776 837 0.537188 GGAGGAAGCGGACATCTTGA 59.463 55.000 0.00 0.00 0.00 3.02
796 857 2.039818 TACTGAACCACACGGCAAAA 57.960 45.000 0.00 0.00 34.57 2.44
810 871 1.401018 GGCAAAACCATCGAAACCTCG 60.401 52.381 0.00 0.00 41.92 4.63
820 881 1.941975 TCGAAACCTCGGGTGAAAAAC 59.058 47.619 0.00 0.00 45.49 2.43
836 897 4.817464 TGAAAAACGTGGTATACTTGCACT 59.183 37.500 2.25 0.00 0.00 4.40
867 928 3.314951 GAGTGGCCTTCCTCTCCC 58.685 66.667 3.32 0.00 43.69 4.30
869 930 2.285743 GTGGCCTTCCTCTCCCCT 60.286 66.667 3.32 0.00 0.00 4.79
873 934 1.002274 GCCTTCCTCTCCCCTCTCA 59.998 63.158 0.00 0.00 0.00 3.27
880 943 2.158340 TCCTCTCCCCTCTCATCTGATG 60.158 54.545 11.42 11.42 0.00 3.07
898 961 0.546122 TGATACGCCTTGCCTTGGAT 59.454 50.000 0.00 0.00 0.00 3.41
937 1005 0.320508 GACGGTGACTTGTCCCTTCC 60.321 60.000 0.00 0.00 0.00 3.46
939 1007 1.481056 CGGTGACTTGTCCCTTCCCT 61.481 60.000 0.00 0.00 0.00 4.20
955 1023 1.078567 CCTGCAAGTCTCCTGCCTC 60.079 63.158 0.00 0.00 0.00 4.70
963 1031 2.387757 AGTCTCCTGCCTCTTGATCTC 58.612 52.381 0.00 0.00 0.00 2.75
1020 1088 2.604855 CGTATAAGTAGAGGCAGTGCGG 60.605 54.545 9.45 0.00 0.00 5.69
1060 1129 0.593128 TGCAAGCCGCTTCTTTCTTC 59.407 50.000 1.56 0.00 43.06 2.87
1066 1136 1.878102 GCCGCTTCTTTCTTCTGTCCA 60.878 52.381 0.00 0.00 0.00 4.02
1072 1142 3.299340 TCTTTCTTCTGTCCACGTAGC 57.701 47.619 0.00 0.00 0.00 3.58
1074 1144 3.321111 TCTTTCTTCTGTCCACGTAGCTT 59.679 43.478 0.00 0.00 0.00 3.74
2067 2186 7.123697 CCGAGGAGATGGTATAATACATAACCA 59.876 40.741 0.00 0.00 45.58 3.67
2219 2352 1.401539 GGAAATTTGACTGCGTCAGCC 60.402 52.381 10.44 0.00 43.69 4.85
2295 2438 0.605319 TGTTTGCTTCTCCCGCGATT 60.605 50.000 8.23 0.00 0.00 3.34
2314 2457 2.033602 GCACGTGGGCCCTTTAGT 59.966 61.111 25.70 14.52 0.00 2.24
2364 2511 7.725844 AGAGTTTTCCTCACCTGAATTGTATTT 59.274 33.333 0.00 0.00 43.12 1.40
2442 2589 2.415776 TCGTCTCCGCGGTTTATTTTT 58.584 42.857 27.15 0.00 0.00 1.94
2537 2689 3.537506 TCTCCTCCCACCACCCCA 61.538 66.667 0.00 0.00 0.00 4.96
2813 2969 1.485066 ACACGTCACAACTTTCCTCCT 59.515 47.619 0.00 0.00 0.00 3.69
2921 3077 9.176460 CAATAAAACCCCATTTGCATAGAAATT 57.824 29.630 0.00 0.00 0.00 1.82
3060 3217 3.643237 ACTGAGATCTCCGGGTTATGAA 58.357 45.455 20.03 0.00 0.00 2.57
3062 3219 4.282195 ACTGAGATCTCCGGGTTATGAATC 59.718 45.833 20.03 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 275 0.389948 GACGCCATCGACCTCAAAGT 60.390 55.000 0.00 0.00 39.41 2.66
238 277 1.079405 GGACGCCATCGACCTCAAA 60.079 57.895 0.00 0.00 44.89 2.69
339 387 1.688187 GCCTACTCCTTTCCCCGGA 60.688 63.158 0.73 0.00 0.00 5.14
507 563 2.484889 GGCGACCTATTTCATCCACTC 58.515 52.381 0.00 0.00 0.00 3.51
549 605 2.766263 CAGACCTAGCCACATCCTAACA 59.234 50.000 0.00 0.00 0.00 2.41
550 606 3.031736 TCAGACCTAGCCACATCCTAAC 58.968 50.000 0.00 0.00 0.00 2.34
551 607 3.052869 TCTCAGACCTAGCCACATCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
552 608 2.514160 TCTCAGACCTAGCCACATCCTA 59.486 50.000 0.00 0.00 0.00 2.94
553 609 1.289231 TCTCAGACCTAGCCACATCCT 59.711 52.381 0.00 0.00 0.00 3.24
554 610 1.781786 TCTCAGACCTAGCCACATCC 58.218 55.000 0.00 0.00 0.00 3.51
555 611 4.414337 AAATCTCAGACCTAGCCACATC 57.586 45.455 0.00 0.00 0.00 3.06
556 612 5.957771 TTAAATCTCAGACCTAGCCACAT 57.042 39.130 0.00 0.00 0.00 3.21
557 613 5.425217 TGATTAAATCTCAGACCTAGCCACA 59.575 40.000 0.00 0.00 0.00 4.17
558 614 5.918608 TGATTAAATCTCAGACCTAGCCAC 58.081 41.667 0.00 0.00 0.00 5.01
559 615 6.560003 TTGATTAAATCTCAGACCTAGCCA 57.440 37.500 0.00 0.00 0.00 4.75
560 616 8.093659 GATTTGATTAAATCTCAGACCTAGCC 57.906 38.462 14.07 0.00 45.57 3.93
615 671 7.547722 AGATCCGTGCAACTTTTTAAACTTTTT 59.452 29.630 0.00 0.00 31.75 1.94
616 672 7.039270 AGATCCGTGCAACTTTTTAAACTTTT 58.961 30.769 0.00 0.00 31.75 2.27
617 673 6.569780 AGATCCGTGCAACTTTTTAAACTTT 58.430 32.000 0.00 0.00 31.75 2.66
618 674 6.144078 AGATCCGTGCAACTTTTTAAACTT 57.856 33.333 0.00 0.00 31.75 2.66
619 675 5.298276 TGAGATCCGTGCAACTTTTTAAACT 59.702 36.000 0.00 0.00 31.75 2.66
620 676 5.516090 TGAGATCCGTGCAACTTTTTAAAC 58.484 37.500 0.00 0.00 31.75 2.01
621 677 5.759506 TGAGATCCGTGCAACTTTTTAAA 57.240 34.783 0.00 0.00 31.75 1.52
622 678 5.759506 TTGAGATCCGTGCAACTTTTTAA 57.240 34.783 0.00 0.00 31.75 1.52
623 679 5.240623 ACATTGAGATCCGTGCAACTTTTTA 59.759 36.000 0.00 0.00 31.75 1.52
624 680 4.037923 ACATTGAGATCCGTGCAACTTTTT 59.962 37.500 0.00 0.00 31.75 1.94
625 681 3.569701 ACATTGAGATCCGTGCAACTTTT 59.430 39.130 0.00 0.00 31.75 2.27
626 682 3.149196 ACATTGAGATCCGTGCAACTTT 58.851 40.909 0.00 0.00 31.75 2.66
627 683 2.783135 ACATTGAGATCCGTGCAACTT 58.217 42.857 0.00 0.00 31.75 2.66
628 684 2.479566 ACATTGAGATCCGTGCAACT 57.520 45.000 0.00 0.00 31.75 3.16
629 685 3.932710 TCTTACATTGAGATCCGTGCAAC 59.067 43.478 0.00 0.00 0.00 4.17
630 686 4.200838 TCTTACATTGAGATCCGTGCAA 57.799 40.909 0.00 0.00 0.00 4.08
631 687 3.885724 TCTTACATTGAGATCCGTGCA 57.114 42.857 0.00 0.00 0.00 4.57
632 688 4.626042 AGATCTTACATTGAGATCCGTGC 58.374 43.478 9.76 0.00 46.88 5.34
633 689 6.360947 CGTAAGATCTTACATTGAGATCCGTG 59.639 42.308 33.89 16.27 46.88 4.94
634 690 6.439599 CGTAAGATCTTACATTGAGATCCGT 58.560 40.000 33.89 2.52 46.88 4.69
635 691 5.859114 CCGTAAGATCTTACATTGAGATCCG 59.141 44.000 33.89 20.80 46.88 4.18
636 692 6.982852 TCCGTAAGATCTTACATTGAGATCC 58.017 40.000 33.89 12.48 46.88 3.36
637 693 9.781834 CTATCCGTAAGATCTTACATTGAGATC 57.218 37.037 33.89 13.07 46.32 2.75
638 694 9.521841 TCTATCCGTAAGATCTTACATTGAGAT 57.478 33.333 33.89 27.22 44.12 2.75
639 695 8.919777 TCTATCCGTAAGATCTTACATTGAGA 57.080 34.615 33.89 27.20 44.12 3.27
640 696 7.753132 GCTCTATCCGTAAGATCTTACATTGAG 59.247 40.741 33.89 31.03 44.12 3.02
641 697 7.230712 TGCTCTATCCGTAAGATCTTACATTGA 59.769 37.037 33.89 27.52 44.12 2.57
642 698 7.371159 TGCTCTATCCGTAAGATCTTACATTG 58.629 38.462 33.89 23.95 44.12 2.82
643 699 7.526142 TGCTCTATCCGTAAGATCTTACATT 57.474 36.000 33.89 23.31 44.12 2.71
644 700 7.394641 TCATGCTCTATCCGTAAGATCTTACAT 59.605 37.037 33.89 25.61 44.12 2.29
645 701 6.715264 TCATGCTCTATCCGTAAGATCTTACA 59.285 38.462 33.89 21.85 44.12 2.41
646 702 7.024768 GTCATGCTCTATCCGTAAGATCTTAC 58.975 42.308 28.53 28.53 41.37 2.34
647 703 6.943146 AGTCATGCTCTATCCGTAAGATCTTA 59.057 38.462 11.24 11.24 43.02 2.10
648 704 5.772672 AGTCATGCTCTATCCGTAAGATCTT 59.227 40.000 13.56 13.56 43.02 2.40
649 705 5.182950 CAGTCATGCTCTATCCGTAAGATCT 59.817 44.000 0.00 0.00 43.02 2.75
650 706 5.182190 TCAGTCATGCTCTATCCGTAAGATC 59.818 44.000 0.00 0.00 43.02 2.75
651 707 5.073428 TCAGTCATGCTCTATCCGTAAGAT 58.927 41.667 0.00 0.00 43.02 2.40
652 708 4.461198 TCAGTCATGCTCTATCCGTAAGA 58.539 43.478 0.00 0.00 43.02 2.10
653 709 4.517075 TCTCAGTCATGCTCTATCCGTAAG 59.483 45.833 0.00 0.00 0.00 2.34
654 710 4.276183 GTCTCAGTCATGCTCTATCCGTAA 59.724 45.833 0.00 0.00 0.00 3.18
655 711 3.815962 GTCTCAGTCATGCTCTATCCGTA 59.184 47.826 0.00 0.00 0.00 4.02
656 712 2.621055 GTCTCAGTCATGCTCTATCCGT 59.379 50.000 0.00 0.00 0.00 4.69
657 713 2.884012 AGTCTCAGTCATGCTCTATCCG 59.116 50.000 0.00 0.00 0.00 4.18
658 714 4.935352 AAGTCTCAGTCATGCTCTATCC 57.065 45.455 0.00 0.00 0.00 2.59
659 715 6.800543 TGTTAAGTCTCAGTCATGCTCTATC 58.199 40.000 0.00 0.00 0.00 2.08
660 716 6.782082 TGTTAAGTCTCAGTCATGCTCTAT 57.218 37.500 0.00 0.00 0.00 1.98
661 717 6.434340 TCTTGTTAAGTCTCAGTCATGCTCTA 59.566 38.462 0.00 0.00 0.00 2.43
662 718 5.244851 TCTTGTTAAGTCTCAGTCATGCTCT 59.755 40.000 0.00 0.00 0.00 4.09
663 719 5.347364 GTCTTGTTAAGTCTCAGTCATGCTC 59.653 44.000 0.00 0.00 0.00 4.26
664 720 5.011533 AGTCTTGTTAAGTCTCAGTCATGCT 59.988 40.000 0.00 0.00 0.00 3.79
665 721 5.119898 CAGTCTTGTTAAGTCTCAGTCATGC 59.880 44.000 0.00 0.00 0.00 4.06
666 722 6.450545 TCAGTCTTGTTAAGTCTCAGTCATG 58.549 40.000 0.00 0.00 0.00 3.07
667 723 6.656632 TCAGTCTTGTTAAGTCTCAGTCAT 57.343 37.500 0.00 0.00 0.00 3.06
668 724 6.656632 ATCAGTCTTGTTAAGTCTCAGTCA 57.343 37.500 0.00 0.00 0.00 3.41
669 725 6.926272 ACAATCAGTCTTGTTAAGTCTCAGTC 59.074 38.462 0.00 0.00 35.90 3.51
670 726 6.703607 CACAATCAGTCTTGTTAAGTCTCAGT 59.296 38.462 0.00 0.00 37.25 3.41
671 727 6.703607 ACACAATCAGTCTTGTTAAGTCTCAG 59.296 38.462 0.00 0.00 37.25 3.35
672 728 6.582636 ACACAATCAGTCTTGTTAAGTCTCA 58.417 36.000 0.00 0.00 37.25 3.27
673 729 7.484035 AACACAATCAGTCTTGTTAAGTCTC 57.516 36.000 0.00 0.00 37.25 3.36
674 730 8.827677 GTTAACACAATCAGTCTTGTTAAGTCT 58.172 33.333 0.00 0.00 42.28 3.24
675 731 8.068380 GGTTAACACAATCAGTCTTGTTAAGTC 58.932 37.037 8.10 1.72 42.28 3.01
676 732 7.554835 TGGTTAACACAATCAGTCTTGTTAAGT 59.445 33.333 8.10 0.00 42.28 2.24
677 733 7.925993 TGGTTAACACAATCAGTCTTGTTAAG 58.074 34.615 8.10 0.00 42.28 1.85
678 734 7.554835 ACTGGTTAACACAATCAGTCTTGTTAA 59.445 33.333 8.10 3.66 40.43 2.01
679 735 7.051623 ACTGGTTAACACAATCAGTCTTGTTA 58.948 34.615 8.10 0.00 37.25 2.41
680 736 5.885912 ACTGGTTAACACAATCAGTCTTGTT 59.114 36.000 8.10 0.00 37.25 2.83
681 737 5.437060 ACTGGTTAACACAATCAGTCTTGT 58.563 37.500 8.10 0.00 39.91 3.16
682 738 6.481976 TGTACTGGTTAACACAATCAGTCTTG 59.518 38.462 15.05 0.00 39.16 3.02
683 739 6.588204 TGTACTGGTTAACACAATCAGTCTT 58.412 36.000 15.05 0.00 39.16 3.01
684 740 6.169557 TGTACTGGTTAACACAATCAGTCT 57.830 37.500 15.05 0.00 39.16 3.24
685 741 5.989777 ACTGTACTGGTTAACACAATCAGTC 59.010 40.000 15.05 9.53 39.16 3.51
686 742 5.925509 ACTGTACTGGTTAACACAATCAGT 58.074 37.500 15.67 15.67 41.02 3.41
687 743 7.956420 TTACTGTACTGGTTAACACAATCAG 57.044 36.000 8.10 11.66 0.00 2.90
688 744 7.988599 ACTTTACTGTACTGGTTAACACAATCA 59.011 33.333 8.10 0.51 0.00 2.57
689 745 8.374327 ACTTTACTGTACTGGTTAACACAATC 57.626 34.615 8.10 0.00 0.00 2.67
690 746 8.617809 CAACTTTACTGTACTGGTTAACACAAT 58.382 33.333 8.10 0.00 0.00 2.71
691 747 7.607223 ACAACTTTACTGTACTGGTTAACACAA 59.393 33.333 8.10 0.00 0.00 3.33
692 748 7.104939 ACAACTTTACTGTACTGGTTAACACA 58.895 34.615 8.10 2.20 0.00 3.72
693 749 7.543947 ACAACTTTACTGTACTGGTTAACAC 57.456 36.000 8.10 0.00 0.00 3.32
694 750 8.564509 AAACAACTTTACTGTACTGGTTAACA 57.435 30.769 8.10 0.00 0.00 2.41
695 751 8.124823 GGAAACAACTTTACTGTACTGGTTAAC 58.875 37.037 4.66 0.00 0.00 2.01
696 752 7.282901 GGGAAACAACTTTACTGTACTGGTTAA 59.717 37.037 4.66 0.00 0.00 2.01
697 753 6.767423 GGGAAACAACTTTACTGTACTGGTTA 59.233 38.462 4.66 0.00 0.00 2.85
698 754 5.591472 GGGAAACAACTTTACTGTACTGGTT 59.409 40.000 4.66 0.00 0.00 3.67
699 755 5.104235 AGGGAAACAACTTTACTGTACTGGT 60.104 40.000 4.66 1.40 0.00 4.00
700 756 5.374071 AGGGAAACAACTTTACTGTACTGG 58.626 41.667 4.66 0.00 0.00 4.00
701 757 5.469084 GGAGGGAAACAACTTTACTGTACTG 59.531 44.000 0.00 0.00 0.00 2.74
702 758 5.455755 GGGAGGGAAACAACTTTACTGTACT 60.456 44.000 0.00 0.00 0.00 2.73
703 759 4.758674 GGGAGGGAAACAACTTTACTGTAC 59.241 45.833 0.00 0.00 0.00 2.90
704 760 4.661709 AGGGAGGGAAACAACTTTACTGTA 59.338 41.667 0.00 0.00 0.00 2.74
705 761 3.462205 AGGGAGGGAAACAACTTTACTGT 59.538 43.478 0.00 0.00 0.00 3.55
706 762 3.821033 CAGGGAGGGAAACAACTTTACTG 59.179 47.826 0.00 0.00 0.00 2.74
707 763 3.181433 CCAGGGAGGGAAACAACTTTACT 60.181 47.826 0.00 0.00 0.00 2.24
708 764 3.154710 CCAGGGAGGGAAACAACTTTAC 58.845 50.000 0.00 0.00 0.00 2.01
709 765 2.490168 GCCAGGGAGGGAAACAACTTTA 60.490 50.000 0.00 0.00 38.09 1.85
710 766 1.757764 GCCAGGGAGGGAAACAACTTT 60.758 52.381 0.00 0.00 38.09 2.66
711 767 0.178961 GCCAGGGAGGGAAACAACTT 60.179 55.000 0.00 0.00 38.09 2.66
712 768 1.460699 GCCAGGGAGGGAAACAACT 59.539 57.895 0.00 0.00 38.09 3.16
713 769 1.606601 GGCCAGGGAGGGAAACAAC 60.607 63.158 0.00 0.00 38.09 3.32
714 770 1.778383 AGGCCAGGGAGGGAAACAA 60.778 57.895 5.01 0.00 38.09 2.83
725 781 2.593978 CTGATCCCACAGGCCAGG 59.406 66.667 5.01 3.25 34.64 4.45
734 790 0.254178 GAGAAGCCAAGCTGATCCCA 59.746 55.000 0.00 0.00 39.62 4.37
736 792 0.254178 TGGAGAAGCCAAGCTGATCC 59.746 55.000 11.54 11.54 45.87 3.36
766 823 4.631813 GTGTGGTTCAGTATCAAGATGTCC 59.368 45.833 0.00 0.00 0.00 4.02
767 824 4.327357 CGTGTGGTTCAGTATCAAGATGTC 59.673 45.833 0.00 0.00 0.00 3.06
769 826 3.618594 CCGTGTGGTTCAGTATCAAGATG 59.381 47.826 0.00 0.00 0.00 2.90
770 827 3.861840 CCGTGTGGTTCAGTATCAAGAT 58.138 45.455 0.00 0.00 0.00 2.40
771 828 2.611971 GCCGTGTGGTTCAGTATCAAGA 60.612 50.000 0.00 0.00 37.67 3.02
776 837 2.264005 TTTGCCGTGTGGTTCAGTAT 57.736 45.000 0.00 0.00 37.67 2.12
810 871 4.614306 GCAAGTATACCACGTTTTTCACCC 60.614 45.833 0.00 0.00 0.00 4.61
820 881 1.720805 TGCAGTGCAAGTATACCACG 58.279 50.000 17.26 0.03 34.76 4.94
836 897 3.053693 AGGCCACTCTTGGTATATTTGCA 60.054 43.478 5.01 0.00 45.98 4.08
851 912 2.285743 GGGGAGAGGAAGGCCACT 60.286 66.667 5.01 0.00 37.85 4.00
867 928 2.824936 AGGCGTATCATCAGATGAGAGG 59.175 50.000 19.18 19.18 43.53 3.69
869 930 3.553715 GCAAGGCGTATCATCAGATGAGA 60.554 47.826 18.13 11.35 43.53 3.27
873 934 1.696336 AGGCAAGGCGTATCATCAGAT 59.304 47.619 0.00 0.00 38.29 2.90
880 943 0.947244 CATCCAAGGCAAGGCGTATC 59.053 55.000 0.00 0.00 0.00 2.24
935 1003 2.596851 GGCAGGAGACTTGCAGGGA 61.597 63.158 0.00 0.00 40.21 4.20
937 1005 1.078567 GAGGCAGGAGACTTGCAGG 60.079 63.158 7.99 0.00 40.21 4.85
939 1007 0.035881 CAAGAGGCAGGAGACTTGCA 59.964 55.000 7.99 0.00 40.21 4.08
955 1023 1.328680 CATTCCGGTTGCGAGATCAAG 59.671 52.381 0.00 0.00 0.00 3.02
963 1031 1.003262 CAAGTTGCATTCCGGTTGCG 61.003 55.000 21.42 8.08 43.10 4.85
1020 1088 2.276740 CTTGGAGGACCATGGCCC 59.723 66.667 13.04 11.25 46.34 5.80
1048 1117 1.457303 CGTGGACAGAAGAAAGAAGCG 59.543 52.381 0.00 0.00 0.00 4.68
1060 1129 0.732880 CCGTCAAGCTACGTGGACAG 60.733 60.000 1.81 0.00 41.27 3.51
1066 1136 2.432628 GCTGCCGTCAAGCTACGT 60.433 61.111 8.15 0.00 41.27 3.57
1072 1142 2.856032 CAACTCGCTGCCGTCAAG 59.144 61.111 0.00 0.00 35.54 3.02
1187 1266 3.207669 GCTTCATCTGCAGCCCCG 61.208 66.667 9.47 0.00 0.00 5.73
1422 1504 2.048127 AAGAACTCGTCGCCCAGC 60.048 61.111 0.00 0.00 0.00 4.85
2024 2135 2.394563 GGCCTCTCAGTTGCGCTTC 61.395 63.158 9.73 0.98 0.00 3.86
2219 2352 2.678336 GGTTAGTCTTTTGAGGCCATCG 59.322 50.000 5.01 0.00 0.00 3.84
2274 2407 0.816018 TCGCGGGAGAAGCAAACAAA 60.816 50.000 6.13 0.00 34.19 2.83
2321 2468 3.099905 ACTCTCCTCCGATGAACATTCA 58.900 45.455 0.00 0.00 42.14 2.57
2338 2485 5.053978 ACAATTCAGGTGAGGAAAACTCT 57.946 39.130 0.00 0.00 46.72 3.24
2348 2495 8.592809 AGGCAAAAATAAATACAATTCAGGTGA 58.407 29.630 0.00 0.00 0.00 4.02
2364 2511 8.272173 AGGCTGTAAAGTCTATAGGCAAAAATA 58.728 33.333 7.19 0.00 36.51 1.40
2461 2611 4.348495 GGAGGGGGTGGTGGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
2515 2667 2.037367 TGGTGGGAGGAGAGACGG 59.963 66.667 0.00 0.00 0.00 4.79
2581 2735 9.979578 TGTTATACGTTAGAAAAGTTCTGGTTA 57.020 29.630 0.00 0.00 40.94 2.85
2772 2928 8.460428 ACGTGTCTGTTATTTGTTTCCTAAAAA 58.540 29.630 0.00 0.00 0.00 1.94
2841 2997 4.304110 TGTGACGTGTCTGATTAGGAAAC 58.696 43.478 0.00 0.00 0.00 2.78
2872 3028 8.780846 TTGTTTGGTAACGTGATATCAGTATT 57.219 30.769 5.42 3.64 37.06 1.89
2873 3029 8.958119 ATTGTTTGGTAACGTGATATCAGTAT 57.042 30.769 5.42 0.00 37.06 2.12
2968 3124 8.973182 GGTGGAAAACATAGGAAATATTGGTTA 58.027 33.333 0.00 0.00 0.00 2.85
3060 3217 6.366877 CACAATTGGAAAGAATCGCAAAAGAT 59.633 34.615 10.83 0.00 0.00 2.40
3062 3219 5.691305 TCACAATTGGAAAGAATCGCAAAAG 59.309 36.000 10.83 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.