Multiple sequence alignment - TraesCS5D01G344600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G344600 chr5D 100.000 5218 0 0 872 6089 432033789 432028572 0.000000e+00 9636.0
1 TraesCS5D01G344600 chr5D 83.258 2216 343 20 2565 4771 443357205 443359401 0.000000e+00 2012.0
2 TraesCS5D01G344600 chr5D 100.000 660 0 0 1 660 432034660 432034001 0.000000e+00 1219.0
3 TraesCS5D01G344600 chr5D 87.162 444 52 4 1587 2027 443355625 443356066 3.280000e-137 499.0
4 TraesCS5D01G344600 chr5D 86.461 421 57 0 1001 1421 443355208 443355628 4.300000e-126 462.0
5 TraesCS5D01G344600 chr5D 93.689 206 9 3 5673 5876 432023848 432023645 7.670000e-79 305.0
6 TraesCS5D01G344600 chr5A 88.215 4090 363 55 926 4957 547120864 547116836 0.000000e+00 4772.0
7 TraesCS5D01G344600 chr5A 91.718 326 21 3 5176 5499 547073639 547073318 1.200000e-121 448.0
8 TraesCS5D01G344600 chr5A 89.354 263 19 6 4924 5180 547116827 547116568 7.610000e-84 322.0
9 TraesCS5D01G344600 chr5A 84.858 317 34 9 2 306 547121979 547121665 2.130000e-79 307.0
10 TraesCS5D01G344600 chr5A 87.838 148 11 6 515 660 547121297 547121155 3.780000e-37 167.0
11 TraesCS5D01G344600 chr5B 94.575 2968 135 15 926 3872 523932314 523935276 0.000000e+00 4566.0
12 TraesCS5D01G344600 chr5B 80.758 2692 420 61 2447 5100 539802379 539805010 0.000000e+00 2012.0
13 TraesCS5D01G344600 chr5B 86.146 1256 134 26 3864 5090 523935923 523937167 0.000000e+00 1319.0
14 TraesCS5D01G344600 chr5B 87.370 768 69 15 5116 5869 523955361 523956114 0.000000e+00 856.0
15 TraesCS5D01G344600 chr5B 87.162 444 52 4 1587 2027 539800563 539801004 3.280000e-137 499.0
16 TraesCS5D01G344600 chr5B 87.411 421 53 0 1001 1421 539800146 539800566 9.180000e-133 484.0
17 TraesCS5D01G344600 chr5B 94.118 289 8 2 381 660 523932018 523932306 1.210000e-116 431.0
18 TraesCS5D01G344600 chr5B 90.432 324 21 5 63 383 523931610 523931926 9.440000e-113 418.0
19 TraesCS5D01G344600 chr2D 78.031 701 107 28 4882 5553 86494866 86494184 1.230000e-106 398.0
20 TraesCS5D01G344600 chr2D 82.743 226 23 12 5876 6089 363898528 363898749 2.900000e-43 187.0
21 TraesCS5D01G344600 chr2B 77.340 609 93 28 4882 5472 139343933 139343352 9.850000e-83 318.0
22 TraesCS5D01G344600 chr1D 73.990 842 193 23 2752 3581 363122738 363123565 9.850000e-83 318.0
23 TraesCS5D01G344600 chr1D 82.900 269 42 4 1000 1266 11494274 11494540 7.890000e-59 239.0
24 TraesCS5D01G344600 chr1D 80.827 266 47 4 1000 1263 11273114 11273377 8.000000e-49 206.0
25 TraesCS5D01G344600 chr1D 83.700 227 20 8 5876 6089 35304459 35304681 1.340000e-46 198.0
26 TraesCS5D01G344600 chr1D 80.617 227 27 7 5876 6089 168297354 168297132 6.320000e-35 159.0
27 TraesCS5D01G344600 chr2A 77.033 492 72 26 5003 5472 86901927 86901455 1.700000e-60 244.0
28 TraesCS5D01G344600 chr2A 81.696 224 24 8 5876 6086 359444635 359444854 2.920000e-38 171.0
29 TraesCS5D01G344600 chr1B 83.588 262 35 8 1010 1267 16518256 16518513 7.890000e-59 239.0
30 TraesCS5D01G344600 chr1B 80.812 271 44 8 1000 1266 17018933 17018667 8.000000e-49 206.0
31 TraesCS5D01G344600 chr6D 86.047 215 25 3 5876 6089 309795091 309795301 6.140000e-55 226.0
32 TraesCS5D01G344600 chr6D 83.721 215 27 4 5876 6089 198309206 198309413 4.810000e-46 196.0
33 TraesCS5D01G344600 chr6D 82.743 226 22 8 5876 6088 353812051 353811830 1.040000e-42 185.0
34 TraesCS5D01G344600 chr4A 84.434 212 29 1 5878 6089 5896373 5896166 8.000000e-49 206.0
35 TraesCS5D01G344600 chr1A 80.989 263 46 4 1000 1260 13347389 13347649 8.000000e-49 206.0
36 TraesCS5D01G344600 chr4D 82.819 227 22 13 5876 6089 126444691 126444913 2.900000e-43 187.0
37 TraesCS5D01G344600 chrUn 83.871 62 10 0 3447 3508 305211558 305211619 6.590000e-05 60.2
38 TraesCS5D01G344600 chrUn 81.690 71 13 0 3447 3517 320034148 320034078 6.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G344600 chr5D 432028572 432034660 6088 True 5427.500000 9636 100.000000 1 6089 2 chr5D.!!$R2 6088
1 TraesCS5D01G344600 chr5D 443355208 443359401 4193 False 991.000000 2012 85.627000 1001 4771 3 chr5D.!!$F1 3770
2 TraesCS5D01G344600 chr5A 547116568 547121979 5411 True 1392.000000 4772 87.566250 2 5180 4 chr5A.!!$R2 5178
3 TraesCS5D01G344600 chr5B 523931610 523937167 5557 False 1683.500000 4566 91.317750 63 5090 4 chr5B.!!$F2 5027
4 TraesCS5D01G344600 chr5B 539800146 539805010 4864 False 998.333333 2012 85.110333 1001 5100 3 chr5B.!!$F3 4099
5 TraesCS5D01G344600 chr5B 523955361 523956114 753 False 856.000000 856 87.370000 5116 5869 1 chr5B.!!$F1 753
6 TraesCS5D01G344600 chr2D 86494184 86494866 682 True 398.000000 398 78.031000 4882 5553 1 chr2D.!!$R1 671
7 TraesCS5D01G344600 chr2B 139343352 139343933 581 True 318.000000 318 77.340000 4882 5472 1 chr2B.!!$R1 590
8 TraesCS5D01G344600 chr1D 363122738 363123565 827 False 318.000000 318 73.990000 2752 3581 1 chr1D.!!$F4 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 133 0.034756 CCGGATGGCGTGGATCATTA 59.965 55.0 0.00 0.0 0.00 1.90 F
575 758 0.179094 ACGCGTTGAGAACAAGTGGA 60.179 50.0 5.58 0.0 36.64 4.02 F
961 1394 0.506080 CATCGTCGATGCTAAGCTGC 59.494 55.0 21.42 0.0 33.17 5.25 F
2027 2478 0.388294 GTATACACCCTCGCCCAGTC 59.612 60.0 0.00 0.0 0.00 3.51 F
3678 5170 0.179076 CAGCCGTGACTATCATGCCA 60.179 55.0 0.00 0.0 32.19 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 2020 0.916358 ACCTGGGAGGGGAAGATGTG 60.916 60.000 0.0 0.0 40.58 3.21 R
2027 2478 1.266718 CACCAGGAACATTTGACCGTG 59.733 52.381 0.0 0.0 0.00 4.94 R
2633 4121 2.490902 GGGGACACCAGATTCCAAACTT 60.491 50.000 0.0 0.0 39.85 2.66 R
3882 6029 0.109086 ACGGCAACACTCTCATCTCG 60.109 55.000 0.0 0.0 0.00 4.04 R
5204 7443 0.033504 TCCTGTTCTTCGACACCAGC 59.966 55.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.710423 AAACACACATATTATTGCGCCA 57.290 36.364 4.18 0.00 0.00 5.69
36 39 1.332375 TGCGCCAAGTTGAAGTTACAC 59.668 47.619 4.18 0.00 0.00 2.90
41 44 3.380320 GCCAAGTTGAAGTTACACACCTT 59.620 43.478 3.87 0.00 0.00 3.50
79 84 0.548031 ACCCACTTGATCATCGCCAT 59.452 50.000 0.00 0.00 0.00 4.40
116 121 2.552315 CCGTCCAATTTAATCCGGATGG 59.448 50.000 19.95 15.70 45.77 3.51
117 122 2.031157 CGTCCAATTTAATCCGGATGGC 60.031 50.000 19.95 10.29 31.97 4.40
128 133 0.034756 CCGGATGGCGTGGATCATTA 59.965 55.000 0.00 0.00 0.00 1.90
161 167 1.209747 GGTAGGGAGGCTCGTGAAAAT 59.790 52.381 8.69 0.00 0.00 1.82
220 228 5.482908 TCTCTCTGTCTGGTGCTAAATTTC 58.517 41.667 0.00 0.00 0.00 2.17
223 231 7.124901 TCTCTCTGTCTGGTGCTAAATTTCTAT 59.875 37.037 0.00 0.00 0.00 1.98
224 232 8.306313 TCTCTGTCTGGTGCTAAATTTCTATA 57.694 34.615 0.00 0.00 0.00 1.31
260 270 5.105392 AGCTTGTCTCTTTCTAGGTCAGATG 60.105 44.000 0.00 0.00 31.77 2.90
307 317 1.284715 TGTCACTCGTACGTGGCAG 59.715 57.895 20.21 10.77 43.87 4.85
383 413 5.758296 CGGGCACTAATTGATACAGTTGTAT 59.242 40.000 4.52 4.52 43.38 2.29
384 414 6.926826 CGGGCACTAATTGATACAGTTGTATA 59.073 38.462 4.84 0.00 40.99 1.47
385 415 7.602644 CGGGCACTAATTGATACAGTTGTATAT 59.397 37.037 4.84 0.00 40.99 0.86
386 416 9.938280 GGGCACTAATTGATACAGTTGTATATA 57.062 33.333 4.84 0.00 40.99 0.86
552 735 4.992740 TGCCGCCCCAAAGTGCAT 62.993 61.111 0.00 0.00 0.00 3.96
575 758 0.179094 ACGCGTTGAGAACAAGTGGA 60.179 50.000 5.58 0.00 36.64 4.02
893 1078 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
894 1079 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
895 1080 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
896 1081 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
897 1082 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
898 1083 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
899 1084 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
900 1085 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
901 1086 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
902 1087 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
903 1088 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
904 1089 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
905 1090 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
906 1091 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
907 1092 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
908 1093 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
909 1094 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
910 1095 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
911 1096 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
912 1097 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
913 1098 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
914 1099 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
915 1100 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
916 1101 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
917 1102 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
918 1103 1.421646 GAGAGAGAGAGAGAGAGGGGG 59.578 61.905 0.00 0.00 0.00 5.40
961 1394 0.506080 CATCGTCGATGCTAAGCTGC 59.494 55.000 21.42 0.00 33.17 5.25
973 1406 3.135348 TGCTAAGCTGCTCTTACATCCAT 59.865 43.478 1.00 0.00 36.25 3.41
984 1421 6.098838 TGCTCTTACATCCATAGATCAGTGTT 59.901 38.462 0.00 0.00 0.00 3.32
993 1430 5.598417 TCCATAGATCAGTGTTGCTAGCTAA 59.402 40.000 17.23 5.90 0.00 3.09
997 1434 6.531503 AGATCAGTGTTGCTAGCTAACTAA 57.468 37.500 17.23 3.37 0.00 2.24
999 1436 4.817517 TCAGTGTTGCTAGCTAACTAACC 58.182 43.478 17.23 5.90 0.00 2.85
1236 1673 4.511527 TCTCCTACGACATAGAAGACGTT 58.488 43.478 0.00 0.00 40.14 3.99
1263 1700 1.507096 GTTCATTGTGCGCGTCGAC 60.507 57.895 8.43 5.18 0.00 4.20
1280 1717 1.137479 CGACGGCCCTAATAAACCTGA 59.863 52.381 0.00 0.00 0.00 3.86
1366 1803 1.352056 CGTCGTCAGATCGCTAGCA 59.648 57.895 16.45 2.17 0.00 3.49
1511 1955 1.150135 GGGAGAGGGGGATAGACATCA 59.850 57.143 0.00 0.00 32.32 3.07
1584 2034 2.308722 TGGGCACATCTTCCCCTCC 61.309 63.158 0.00 0.00 41.92 4.30
1858 2308 1.135774 GGTTTCGATTCACGGGCTTTC 60.136 52.381 0.00 0.00 42.82 2.62
1879 2329 1.060729 TTCCGGTTGGTCAGAATCCA 58.939 50.000 0.00 0.00 36.30 3.41
2012 2462 6.406624 GGAATTCCTTCACGACAAGAGGTATA 60.407 42.308 17.73 0.00 32.70 1.47
2027 2478 0.388294 GTATACACCCTCGCCCAGTC 59.612 60.000 0.00 0.00 0.00 3.51
2094 2551 7.452880 TGGAAGCAGTTATATAATGATTGGC 57.547 36.000 10.88 4.86 0.00 4.52
2309 3353 7.889873 TTTTTGAGATTTTCCTGGAACACTA 57.110 32.000 9.04 0.00 0.00 2.74
2328 3372 5.701290 ACACTAGCTCAAATGTTAGTGGTTC 59.299 40.000 17.86 0.00 44.47 3.62
2391 3869 9.887629 TTGGTTAACTATGAATACGTTATTGGA 57.112 29.630 5.42 0.00 0.00 3.53
2417 3895 6.381994 AGCCACCAGATTGTGAATTTGATAAT 59.618 34.615 0.00 0.00 38.55 1.28
2485 3970 8.621532 TTATGATTTGAGGTCATTATACAGGC 57.378 34.615 0.00 0.00 37.48 4.85
2580 4067 6.768029 TGAATGCTATTTTTGCTTTGACAC 57.232 33.333 0.00 0.00 0.00 3.67
2595 4083 3.900966 TGACACCATCTGATTCTCAGG 57.099 47.619 4.43 0.00 44.39 3.86
2857 4348 8.680903 AGTTGGCTTTCTCTAATATGAACAATG 58.319 33.333 0.00 0.00 0.00 2.82
3102 4593 7.225725 TCCTTACTATAGCTAGTCTTCTCACC 58.774 42.308 0.00 0.00 39.04 4.02
3235 4726 8.526978 CATTTAGCTACTATGATCTGCCTTCTA 58.473 37.037 8.66 0.00 0.00 2.10
3250 4741 4.256920 GCCTTCTAATCTGAAGACTTGCA 58.743 43.478 5.90 0.00 44.40 4.08
3360 4851 5.762218 GCATGGAAAGCATCAGACTAGTATT 59.238 40.000 0.00 0.00 0.00 1.89
3615 5107 5.989777 TCAAGAAACTACACCTCTTGCTAAC 59.010 40.000 6.23 0.00 43.72 2.34
3678 5170 0.179076 CAGCCGTGACTATCATGCCA 60.179 55.000 0.00 0.00 32.19 4.92
3757 5249 4.324267 GGCACTTAACTTTCAGCCTAAGA 58.676 43.478 0.00 0.00 39.02 2.10
4029 6176 2.265467 TTTATGCCTCCCCGAGCACC 62.265 60.000 0.00 0.00 42.84 5.01
4045 6192 3.741476 CCGTGCAAGAGCTTGGCC 61.741 66.667 11.78 0.00 42.74 5.36
4046 6193 4.093952 CGTGCAAGAGCTTGGCCG 62.094 66.667 11.78 6.71 42.74 6.13
4064 6211 0.460987 CGCCTGGCAAGACTAAGGAG 60.461 60.000 20.29 0.00 30.92 3.69
4081 6228 2.373169 AGGAGGCTTGACATTCACTTCA 59.627 45.455 0.00 0.00 0.00 3.02
4167 6314 8.375493 TCCAAAGTCTAAGTATTACCTGTGAT 57.625 34.615 0.00 0.00 0.00 3.06
4315 6463 6.462500 CCCTCACATCTATCAAACCTATCAG 58.538 44.000 0.00 0.00 0.00 2.90
4350 6498 1.881973 GTCAAGGATGTGCAGCAAGAA 59.118 47.619 0.00 0.00 0.00 2.52
4371 6519 2.309755 AGATGTGCAAATCCTTGGGAGA 59.690 45.455 13.50 0.00 34.05 3.71
4399 6547 2.352617 GCTCTTCGCCATCTCTGGATAG 60.353 54.545 0.00 0.00 46.37 2.08
4500 6648 1.825474 GAGCCAGCCACTCAGTTAGTA 59.175 52.381 0.00 0.00 35.76 1.82
4544 6692 2.809446 TGCAGAATACGTCCGATTCAG 58.191 47.619 11.15 5.26 36.03 3.02
4554 6702 0.681887 TCCGATTCAGTCTGGGCGTA 60.682 55.000 0.00 0.00 0.00 4.42
4605 6753 4.722700 TTTGAGCTCGGCCTGGGC 62.723 66.667 10.75 10.75 41.06 5.36
4705 6863 1.468565 CGGCAGTGAGAAATGCAATGG 60.469 52.381 0.00 0.00 44.37 3.16
4727 6885 2.858768 ACACCCATCCTAACCATCCAAT 59.141 45.455 0.00 0.00 0.00 3.16
4729 6887 2.106511 ACCCATCCTAACCATCCAATCG 59.893 50.000 0.00 0.00 0.00 3.34
4732 6890 4.202419 CCCATCCTAACCATCCAATCGTTA 60.202 45.833 0.00 0.00 0.00 3.18
4738 6896 6.990349 TCCTAACCATCCAATCGTTAATCTTC 59.010 38.462 0.00 0.00 0.00 2.87
4741 6899 7.645058 AACCATCCAATCGTTAATCTTCATT 57.355 32.000 0.00 0.00 0.00 2.57
4758 6916 6.695429 TCTTCATTTGGATCCAGAGATATCG 58.305 40.000 15.53 1.48 30.90 2.92
4794 6955 4.171005 ACAATAACACGTGATACTCACCG 58.829 43.478 25.01 3.70 44.20 4.94
4805 6966 5.463392 CGTGATACTCACCGATGAATGAATT 59.537 40.000 1.90 0.00 44.20 2.17
4806 6967 6.346120 CGTGATACTCACCGATGAATGAATTC 60.346 42.308 0.00 0.00 44.20 2.17
4807 6968 6.479990 GTGATACTCACCGATGAATGAATTCA 59.520 38.462 11.26 11.26 44.34 2.57
4820 6981 7.294676 TGAATGAATTCAGTGTATCTCGTTG 57.705 36.000 14.00 0.00 41.51 4.10
4821 6982 6.873605 TGAATGAATTCAGTGTATCTCGTTGT 59.126 34.615 14.00 0.00 41.51 3.32
4822 6983 7.387673 TGAATGAATTCAGTGTATCTCGTTGTT 59.612 33.333 14.00 0.00 41.51 2.83
4872 7036 2.947652 ACATACATGCACATGCTTCCTC 59.052 45.455 10.50 0.00 42.39 3.71
4873 7037 2.042686 TACATGCACATGCTTCCTCC 57.957 50.000 10.50 0.00 42.39 4.30
4874 7038 1.028330 ACATGCACATGCTTCCTCCG 61.028 55.000 10.50 0.00 42.39 4.63
4876 7040 0.182061 ATGCACATGCTTCCTCCGAT 59.818 50.000 5.31 0.00 42.66 4.18
4877 7041 0.829990 TGCACATGCTTCCTCCGATA 59.170 50.000 5.31 0.00 42.66 2.92
4907 7090 3.376546 GCTCATTTTCGCCTCTCAATCTT 59.623 43.478 0.00 0.00 0.00 2.40
4959 7142 5.766222 TGATGAGTATGACGATGATGACAG 58.234 41.667 0.00 0.00 0.00 3.51
5038 7270 9.683069 TGCTTTCTTTCATTTAATTCTTGAGAC 57.317 29.630 0.00 0.00 0.00 3.36
5046 7278 6.258727 TCATTTAATTCTTGAGACGCTCCATC 59.741 38.462 4.73 0.00 0.00 3.51
5055 7287 3.153919 GAGACGCTCCATCTTAGATCCT 58.846 50.000 0.00 0.00 0.00 3.24
5068 7300 6.154203 TCTTAGATCCTAGCTCACACATTG 57.846 41.667 0.00 0.00 0.00 2.82
5070 7302 2.158842 AGATCCTAGCTCACACATTGCC 60.159 50.000 0.00 0.00 0.00 4.52
5123 7357 2.836360 GCTGGTGGGCATGATGGG 60.836 66.667 0.00 0.00 0.00 4.00
5150 7388 9.189723 GAAGTACACATACGGATTTTATAGGTC 57.810 37.037 0.00 0.00 36.33 3.85
5180 7418 3.132646 CCAGGTGATGAAGAAGAGAGGAG 59.867 52.174 0.00 0.00 0.00 3.69
5182 7420 4.098349 CAGGTGATGAAGAAGAGAGGAGAG 59.902 50.000 0.00 0.00 0.00 3.20
5204 7443 9.962783 GAGAGATGAAATGGATAAAAATCTTGG 57.037 33.333 0.00 0.00 0.00 3.61
5208 7447 6.642430 TGAAATGGATAAAAATCTTGGCTGG 58.358 36.000 0.00 0.00 0.00 4.85
5252 7509 1.352083 AGGTTCCTGTTGCTCTGCTA 58.648 50.000 0.00 0.00 0.00 3.49
5262 7519 0.531753 TGCTCTGCTACAACAACGCA 60.532 50.000 0.00 0.00 0.00 5.24
5301 7558 7.875316 TCAGTATATCGCTTCAATTTAGAGC 57.125 36.000 0.00 0.00 0.00 4.09
5337 7594 5.786311 TCGTTGTACTGCTACCTAATTTGT 58.214 37.500 0.00 0.00 0.00 2.83
5352 7609 6.070251 ACCTAATTTGTTTTCCCCCATTCATC 60.070 38.462 0.00 0.00 0.00 2.92
5361 7618 3.055328 TCCCCCATTCATCTGATTGCTA 58.945 45.455 0.00 0.00 0.00 3.49
5479 7742 0.877071 ATCTGCTTGTTTGTGCCTCG 59.123 50.000 0.00 0.00 0.00 4.63
5501 7764 0.107993 ACCATCATGTGACTGGAGCG 60.108 55.000 14.32 0.00 34.08 5.03
5505 7768 1.834188 TCATGTGACTGGAGCGTAGA 58.166 50.000 0.00 0.00 0.00 2.59
5540 7805 0.870393 CATGATGTCCTATGCGGCAC 59.130 55.000 4.03 0.00 0.00 5.01
5576 7841 1.962547 CGGCGCGATAATTTTTCATCG 59.037 47.619 12.10 4.34 45.27 3.84
5579 7844 3.898361 GGCGCGATAATTTTTCATCGTAC 59.102 43.478 12.10 3.35 44.53 3.67
5580 7845 4.510812 GCGCGATAATTTTTCATCGTACA 58.489 39.130 12.10 0.00 44.53 2.90
5581 7846 4.371948 GCGCGATAATTTTTCATCGTACAC 59.628 41.667 12.10 0.00 44.53 2.90
5594 7859 5.370679 TCATCGTACACTACTACTATGGCA 58.629 41.667 0.00 0.00 0.00 4.92
5595 7860 6.002082 TCATCGTACACTACTACTATGGCAT 58.998 40.000 4.88 4.88 0.00 4.40
5597 7862 7.827729 TCATCGTACACTACTACTATGGCATAT 59.172 37.037 7.81 1.54 0.00 1.78
5623 7889 6.248433 ACATCACTAATTAGGGGCCATATTG 58.752 40.000 14.77 1.72 0.00 1.90
5630 7896 2.815357 AGGGGCCATATTGGAGTCTA 57.185 50.000 4.39 0.00 40.96 2.59
5644 7918 3.204597 GAGTCTACCACTCGTGTCTTG 57.795 52.381 0.00 0.00 42.43 3.02
5650 7924 0.663568 CCACTCGTGTCTTGACCGAC 60.664 60.000 9.18 0.00 34.52 4.79
5653 7927 2.430244 CGTGTCTTGACCGACGGG 60.430 66.667 20.00 0.00 36.71 5.28
5665 7939 1.746787 ACCGACGGGCCATTTTAAATC 59.253 47.619 20.00 0.00 36.48 2.17
5667 7941 1.746220 CGACGGGCCATTTTAAATCCA 59.254 47.619 4.39 0.00 0.00 3.41
5671 7945 2.757868 CGGGCCATTTTAAATCCACTCA 59.242 45.455 4.39 0.00 0.00 3.41
5674 7948 4.953579 GGGCCATTTTAAATCCACTCAGTA 59.046 41.667 4.39 0.00 0.00 2.74
5690 7964 4.645588 ACTCAGTACTTCAGTAGTATGCCC 59.354 45.833 0.00 0.00 41.26 5.36
5691 7965 4.606210 TCAGTACTTCAGTAGTATGCCCA 58.394 43.478 0.00 0.00 41.26 5.36
5697 7971 6.352016 ACTTCAGTAGTATGCCCATCATAG 57.648 41.667 0.00 0.00 38.27 2.23
5701 7975 6.256053 TCAGTAGTATGCCCATCATAGATGA 58.744 40.000 8.49 0.00 38.27 2.92
5711 7985 8.094548 ATGCCCATCATAGATGAATTTTTCATG 58.905 33.333 7.43 0.00 41.04 3.07
5722 7996 2.645730 TTTTTCATGCATGGTACGCC 57.354 45.000 25.97 0.00 0.00 5.68
5735 8009 1.274447 GGTACGCCACTGTAGGAGTTT 59.726 52.381 9.88 0.00 42.02 2.66
5738 8012 1.067071 ACGCCACTGTAGGAGTTTAGC 60.067 52.381 1.23 0.00 38.64 3.09
5742 8016 2.531206 CACTGTAGGAGTTTAGCTCGC 58.469 52.381 0.00 0.00 45.03 5.03
5761 8035 1.734465 GCCTTGGATGACGAACTGAAG 59.266 52.381 0.00 0.00 0.00 3.02
5762 8036 2.350522 CCTTGGATGACGAACTGAAGG 58.649 52.381 0.00 0.00 0.00 3.46
5764 8038 0.976641 TGGATGACGAACTGAAGGCT 59.023 50.000 0.00 0.00 0.00 4.58
5771 8045 3.244078 TGACGAACTGAAGGCTAATGTGT 60.244 43.478 0.00 0.00 0.00 3.72
5790 8064 1.818674 GTAGATTGTGCCTTTGGGTGG 59.181 52.381 0.00 0.00 34.45 4.61
5796 8070 4.133796 GCCTTTGGGTGGCGCATC 62.134 66.667 10.83 0.18 41.03 3.91
5800 8074 1.392589 CTTTGGGTGGCGCATCTAAT 58.607 50.000 10.83 0.00 0.00 1.73
5806 8080 1.388547 GTGGCGCATCTAATTTCCCA 58.611 50.000 10.83 0.00 0.00 4.37
5808 8082 2.030805 GTGGCGCATCTAATTTCCCATC 60.031 50.000 10.83 0.00 0.00 3.51
5817 8091 1.767759 AATTTCCCATCGCTTCCCAG 58.232 50.000 0.00 0.00 0.00 4.45
5828 8102 0.606673 GCTTCCCAGTCCCAAGACAC 60.607 60.000 0.00 0.00 46.15 3.67
5840 8114 3.322828 TCCCAAGACACACACTAGGTTAC 59.677 47.826 0.00 0.00 0.00 2.50
5869 8143 4.327982 TCAGATTCATGCAGCTACCTAC 57.672 45.455 0.00 0.00 0.00 3.18
5870 8144 3.055591 CAGATTCATGCAGCTACCTACG 58.944 50.000 0.00 0.00 0.00 3.51
5871 8145 2.036475 AGATTCATGCAGCTACCTACGG 59.964 50.000 0.00 0.00 0.00 4.02
5872 8146 0.179084 TTCATGCAGCTACCTACGGC 60.179 55.000 0.00 0.00 0.00 5.68
5873 8147 1.043116 TCATGCAGCTACCTACGGCT 61.043 55.000 0.00 0.00 39.60 5.52
5874 8148 0.179073 CATGCAGCTACCTACGGCTT 60.179 55.000 0.00 0.00 36.59 4.35
5875 8149 0.105039 ATGCAGCTACCTACGGCTTC 59.895 55.000 0.00 0.00 36.59 3.86
5876 8150 1.254975 TGCAGCTACCTACGGCTTCA 61.255 55.000 0.00 0.00 36.59 3.02
5877 8151 0.105039 GCAGCTACCTACGGCTTCAT 59.895 55.000 0.00 0.00 36.59 2.57
5878 8152 1.340248 GCAGCTACCTACGGCTTCATA 59.660 52.381 0.00 0.00 36.59 2.15
5879 8153 2.223971 GCAGCTACCTACGGCTTCATAA 60.224 50.000 0.00 0.00 36.59 1.90
5880 8154 3.555168 GCAGCTACCTACGGCTTCATAAT 60.555 47.826 0.00 0.00 36.59 1.28
5881 8155 4.632153 CAGCTACCTACGGCTTCATAATT 58.368 43.478 0.00 0.00 36.59 1.40
5882 8156 4.449068 CAGCTACCTACGGCTTCATAATTG 59.551 45.833 0.00 0.00 36.59 2.32
5883 8157 3.186613 GCTACCTACGGCTTCATAATTGC 59.813 47.826 0.00 0.00 0.00 3.56
5884 8158 3.560636 ACCTACGGCTTCATAATTGCT 57.439 42.857 0.00 0.00 0.00 3.91
5885 8159 3.467803 ACCTACGGCTTCATAATTGCTC 58.532 45.455 0.00 0.00 0.00 4.26
5886 8160 2.808543 CCTACGGCTTCATAATTGCTCC 59.191 50.000 0.00 0.00 0.00 4.70
5887 8161 1.680338 ACGGCTTCATAATTGCTCCC 58.320 50.000 0.00 0.00 0.00 4.30
5888 8162 1.064758 ACGGCTTCATAATTGCTCCCA 60.065 47.619 0.00 0.00 0.00 4.37
5889 8163 1.334869 CGGCTTCATAATTGCTCCCAC 59.665 52.381 0.00 0.00 0.00 4.61
5890 8164 2.659428 GGCTTCATAATTGCTCCCACT 58.341 47.619 0.00 0.00 0.00 4.00
5891 8165 3.744214 CGGCTTCATAATTGCTCCCACTA 60.744 47.826 0.00 0.00 0.00 2.74
5892 8166 4.207165 GGCTTCATAATTGCTCCCACTAA 58.793 43.478 0.00 0.00 0.00 2.24
5893 8167 4.829492 GGCTTCATAATTGCTCCCACTAAT 59.171 41.667 0.00 0.00 0.00 1.73
5894 8168 5.302823 GGCTTCATAATTGCTCCCACTAATT 59.697 40.000 0.00 0.00 0.00 1.40
5895 8169 6.211515 GCTTCATAATTGCTCCCACTAATTG 58.788 40.000 0.00 0.00 0.00 2.32
5896 8170 6.713762 TTCATAATTGCTCCCACTAATTGG 57.286 37.500 0.00 0.00 46.47 3.16
5919 8193 9.881649 TTGGATTATATCTTCTCTATGCATGTC 57.118 33.333 10.16 0.00 0.00 3.06
5920 8194 9.264653 TGGATTATATCTTCTCTATGCATGTCT 57.735 33.333 10.16 0.00 0.00 3.41
5926 8200 5.527033 TCTTCTCTATGCATGTCTTCATCG 58.473 41.667 10.16 0.00 31.15 3.84
5927 8201 4.926140 TCTCTATGCATGTCTTCATCGT 57.074 40.909 10.16 0.00 31.15 3.73
5928 8202 5.268118 TCTCTATGCATGTCTTCATCGTT 57.732 39.130 10.16 0.00 31.15 3.85
5929 8203 5.045872 TCTCTATGCATGTCTTCATCGTTG 58.954 41.667 10.16 0.00 31.15 4.10
5930 8204 5.009854 TCTATGCATGTCTTCATCGTTGA 57.990 39.130 10.16 0.00 31.15 3.18
5931 8205 5.604565 TCTATGCATGTCTTCATCGTTGAT 58.395 37.500 10.16 0.00 31.15 2.57
5932 8206 4.808077 ATGCATGTCTTCATCGTTGATC 57.192 40.909 0.00 0.00 31.15 2.92
5933 8207 3.865446 TGCATGTCTTCATCGTTGATCT 58.135 40.909 0.00 0.00 31.15 2.75
5934 8208 3.619929 TGCATGTCTTCATCGTTGATCTG 59.380 43.478 0.00 0.00 31.15 2.90
5935 8209 3.620374 GCATGTCTTCATCGTTGATCTGT 59.380 43.478 0.00 0.00 31.15 3.41
5936 8210 4.493708 GCATGTCTTCATCGTTGATCTGTG 60.494 45.833 0.00 0.00 31.15 3.66
5937 8211 3.588955 TGTCTTCATCGTTGATCTGTGG 58.411 45.455 0.00 0.00 0.00 4.17
5938 8212 2.349886 GTCTTCATCGTTGATCTGTGGC 59.650 50.000 0.00 0.00 0.00 5.01
5939 8213 2.234661 TCTTCATCGTTGATCTGTGGCT 59.765 45.455 0.00 0.00 0.00 4.75
5940 8214 2.768253 TCATCGTTGATCTGTGGCTT 57.232 45.000 0.00 0.00 0.00 4.35
5941 8215 2.621338 TCATCGTTGATCTGTGGCTTC 58.379 47.619 0.00 0.00 0.00 3.86
5942 8216 2.234661 TCATCGTTGATCTGTGGCTTCT 59.765 45.455 0.00 0.00 0.00 2.85
5943 8217 2.370281 TCGTTGATCTGTGGCTTCTC 57.630 50.000 0.00 0.00 0.00 2.87
5944 8218 0.994995 CGTTGATCTGTGGCTTCTCG 59.005 55.000 0.00 0.00 0.00 4.04
5945 8219 1.402852 CGTTGATCTGTGGCTTCTCGA 60.403 52.381 0.00 0.00 0.00 4.04
5946 8220 2.266554 GTTGATCTGTGGCTTCTCGAG 58.733 52.381 5.93 5.93 0.00 4.04
5958 8232 3.114693 CTTCTCGAGCTTGCACATTTC 57.885 47.619 7.81 0.00 0.00 2.17
5959 8233 2.462456 TCTCGAGCTTGCACATTTCT 57.538 45.000 7.81 0.00 0.00 2.52
5960 8234 2.771089 TCTCGAGCTTGCACATTTCTT 58.229 42.857 7.81 0.00 0.00 2.52
5961 8235 3.141398 TCTCGAGCTTGCACATTTCTTT 58.859 40.909 7.81 0.00 0.00 2.52
5962 8236 3.187227 TCTCGAGCTTGCACATTTCTTTC 59.813 43.478 7.81 0.00 0.00 2.62
5963 8237 3.141398 TCGAGCTTGCACATTTCTTTCT 58.859 40.909 0.00 0.00 0.00 2.52
5964 8238 3.565482 TCGAGCTTGCACATTTCTTTCTT 59.435 39.130 0.00 0.00 0.00 2.52
5965 8239 4.036734 TCGAGCTTGCACATTTCTTTCTTT 59.963 37.500 0.00 0.00 0.00 2.52
5966 8240 4.741676 CGAGCTTGCACATTTCTTTCTTTT 59.258 37.500 0.00 0.00 0.00 2.27
5967 8241 5.232838 CGAGCTTGCACATTTCTTTCTTTTT 59.767 36.000 0.00 0.00 0.00 1.94
5968 8242 6.560983 CGAGCTTGCACATTTCTTTCTTTTTC 60.561 38.462 0.00 0.00 0.00 2.29
5969 8243 5.525012 AGCTTGCACATTTCTTTCTTTTTCC 59.475 36.000 0.00 0.00 0.00 3.13
5970 8244 5.294060 GCTTGCACATTTCTTTCTTTTTCCA 59.706 36.000 0.00 0.00 0.00 3.53
5971 8245 6.017687 GCTTGCACATTTCTTTCTTTTTCCAT 60.018 34.615 0.00 0.00 0.00 3.41
5972 8246 7.467675 GCTTGCACATTTCTTTCTTTTTCCATT 60.468 33.333 0.00 0.00 0.00 3.16
5973 8247 7.481275 TGCACATTTCTTTCTTTTTCCATTC 57.519 32.000 0.00 0.00 0.00 2.67
5974 8248 7.274447 TGCACATTTCTTTCTTTTTCCATTCT 58.726 30.769 0.00 0.00 0.00 2.40
5975 8249 8.420222 TGCACATTTCTTTCTTTTTCCATTCTA 58.580 29.630 0.00 0.00 0.00 2.10
5976 8250 9.260002 GCACATTTCTTTCTTTTTCCATTCTAA 57.740 29.630 0.00 0.00 0.00 2.10
5982 8256 8.996651 TCTTTCTTTTTCCATTCTAAAGAGGT 57.003 30.769 0.00 0.00 38.64 3.85
5987 8261 9.162764 TCTTTTTCCATTCTAAAGAGGTAATCG 57.837 33.333 0.00 0.00 34.07 3.34
5988 8262 8.857694 TTTTTCCATTCTAAAGAGGTAATCGT 57.142 30.769 0.00 0.00 0.00 3.73
5989 8263 8.857694 TTTTCCATTCTAAAGAGGTAATCGTT 57.142 30.769 0.00 0.00 33.88 3.85
5990 8264 7.843490 TTCCATTCTAAAGAGGTAATCGTTG 57.157 36.000 0.00 0.00 31.64 4.10
5991 8265 5.815740 TCCATTCTAAAGAGGTAATCGTTGC 59.184 40.000 0.00 0.00 31.64 4.17
5992 8266 5.817816 CCATTCTAAAGAGGTAATCGTTGCT 59.182 40.000 0.00 0.00 31.64 3.91
5993 8267 6.316390 CCATTCTAAAGAGGTAATCGTTGCTT 59.684 38.462 0.00 0.00 31.64 3.91
5994 8268 7.148239 CCATTCTAAAGAGGTAATCGTTGCTTT 60.148 37.037 0.00 0.00 31.64 3.51
5995 8269 6.721571 TCTAAAGAGGTAATCGTTGCTTTG 57.278 37.500 0.00 0.00 31.64 2.77
5996 8270 6.228258 TCTAAAGAGGTAATCGTTGCTTTGT 58.772 36.000 0.00 0.00 31.64 2.83
5997 8271 7.380536 TCTAAAGAGGTAATCGTTGCTTTGTA 58.619 34.615 0.00 0.00 31.64 2.41
5998 8272 8.038944 TCTAAAGAGGTAATCGTTGCTTTGTAT 58.961 33.333 0.00 0.00 31.64 2.29
5999 8273 6.663944 AAGAGGTAATCGTTGCTTTGTATC 57.336 37.500 0.00 0.00 0.00 2.24
6000 8274 5.978814 AGAGGTAATCGTTGCTTTGTATCT 58.021 37.500 0.00 0.00 0.00 1.98
6001 8275 7.108841 AGAGGTAATCGTTGCTTTGTATCTA 57.891 36.000 0.00 0.00 0.00 1.98
6002 8276 7.553334 AGAGGTAATCGTTGCTTTGTATCTAA 58.447 34.615 0.00 0.00 0.00 2.10
6003 8277 8.204836 AGAGGTAATCGTTGCTTTGTATCTAAT 58.795 33.333 0.00 0.00 0.00 1.73
6004 8278 8.366671 AGGTAATCGTTGCTTTGTATCTAATC 57.633 34.615 0.00 0.00 0.00 1.75
6005 8279 8.204836 AGGTAATCGTTGCTTTGTATCTAATCT 58.795 33.333 0.00 0.00 0.00 2.40
6006 8280 8.488764 GGTAATCGTTGCTTTGTATCTAATCTC 58.511 37.037 0.00 0.00 0.00 2.75
6007 8281 9.031360 GTAATCGTTGCTTTGTATCTAATCTCA 57.969 33.333 0.00 0.00 0.00 3.27
6008 8282 8.668510 AATCGTTGCTTTGTATCTAATCTCAT 57.331 30.769 0.00 0.00 0.00 2.90
6009 8283 7.700322 TCGTTGCTTTGTATCTAATCTCATC 57.300 36.000 0.00 0.00 0.00 2.92
6010 8284 7.492524 TCGTTGCTTTGTATCTAATCTCATCT 58.507 34.615 0.00 0.00 0.00 2.90
6011 8285 7.649705 TCGTTGCTTTGTATCTAATCTCATCTC 59.350 37.037 0.00 0.00 0.00 2.75
6012 8286 7.651304 CGTTGCTTTGTATCTAATCTCATCTCT 59.349 37.037 0.00 0.00 0.00 3.10
6013 8287 9.973450 GTTGCTTTGTATCTAATCTCATCTCTA 57.027 33.333 0.00 0.00 0.00 2.43
6015 8289 8.303156 TGCTTTGTATCTAATCTCATCTCTAGC 58.697 37.037 0.00 0.00 0.00 3.42
6016 8290 7.759433 GCTTTGTATCTAATCTCATCTCTAGCC 59.241 40.741 0.00 0.00 0.00 3.93
6017 8291 8.948401 TTTGTATCTAATCTCATCTCTAGCCT 57.052 34.615 0.00 0.00 0.00 4.58
6018 8292 8.574251 TTGTATCTAATCTCATCTCTAGCCTC 57.426 38.462 0.00 0.00 0.00 4.70
6019 8293 7.694093 TGTATCTAATCTCATCTCTAGCCTCA 58.306 38.462 0.00 0.00 0.00 3.86
6020 8294 8.166726 TGTATCTAATCTCATCTCTAGCCTCAA 58.833 37.037 0.00 0.00 0.00 3.02
6021 8295 6.892658 TCTAATCTCATCTCTAGCCTCAAC 57.107 41.667 0.00 0.00 0.00 3.18
6022 8296 6.609876 TCTAATCTCATCTCTAGCCTCAACT 58.390 40.000 0.00 0.00 0.00 3.16
6023 8297 5.789643 AATCTCATCTCTAGCCTCAACTC 57.210 43.478 0.00 0.00 0.00 3.01
6024 8298 4.518278 TCTCATCTCTAGCCTCAACTCT 57.482 45.455 0.00 0.00 0.00 3.24
6025 8299 5.638530 TCTCATCTCTAGCCTCAACTCTA 57.361 43.478 0.00 0.00 0.00 2.43
6026 8300 6.199557 TCTCATCTCTAGCCTCAACTCTAT 57.800 41.667 0.00 0.00 0.00 1.98
6027 8301 6.237901 TCTCATCTCTAGCCTCAACTCTATC 58.762 44.000 0.00 0.00 0.00 2.08
6028 8302 5.946486 TCATCTCTAGCCTCAACTCTATCA 58.054 41.667 0.00 0.00 0.00 2.15
6029 8303 6.368805 TCATCTCTAGCCTCAACTCTATCAA 58.631 40.000 0.00 0.00 0.00 2.57
6030 8304 6.264292 TCATCTCTAGCCTCAACTCTATCAAC 59.736 42.308 0.00 0.00 0.00 3.18
6031 8305 4.576873 TCTCTAGCCTCAACTCTATCAACG 59.423 45.833 0.00 0.00 0.00 4.10
6032 8306 4.524053 TCTAGCCTCAACTCTATCAACGA 58.476 43.478 0.00 0.00 0.00 3.85
6033 8307 3.791973 AGCCTCAACTCTATCAACGAG 57.208 47.619 0.00 0.00 34.70 4.18
6034 8308 3.093057 AGCCTCAACTCTATCAACGAGT 58.907 45.455 0.00 0.00 43.20 4.18
6035 8309 3.119316 AGCCTCAACTCTATCAACGAGTG 60.119 47.826 0.00 0.00 40.65 3.51
6036 8310 3.182967 CCTCAACTCTATCAACGAGTGC 58.817 50.000 0.00 0.00 40.65 4.40
6037 8311 3.367395 CCTCAACTCTATCAACGAGTGCA 60.367 47.826 0.00 0.00 40.65 4.57
6038 8312 3.575630 TCAACTCTATCAACGAGTGCAC 58.424 45.455 9.40 9.40 40.65 4.57
6039 8313 2.264109 ACTCTATCAACGAGTGCACG 57.736 50.000 12.01 2.67 40.07 5.34
6040 8314 1.810755 ACTCTATCAACGAGTGCACGA 59.189 47.619 12.01 2.12 40.07 4.35
6041 8315 2.159503 ACTCTATCAACGAGTGCACGAG 60.160 50.000 12.01 12.02 40.07 4.18
6042 8316 0.917259 CTATCAACGAGTGCACGAGC 59.083 55.000 12.01 4.23 42.57 5.03
6055 8329 3.764885 GCACGAGCACCTATCAAATTT 57.235 42.857 0.00 0.00 41.58 1.82
6056 8330 3.685058 GCACGAGCACCTATCAAATTTC 58.315 45.455 0.00 0.00 41.58 2.17
6057 8331 3.785505 GCACGAGCACCTATCAAATTTCG 60.786 47.826 0.00 0.00 41.58 3.46
6058 8332 3.370978 CACGAGCACCTATCAAATTTCGT 59.629 43.478 0.00 0.00 40.23 3.85
6059 8333 3.370978 ACGAGCACCTATCAAATTTCGTG 59.629 43.478 0.00 0.00 38.44 4.35
6060 8334 3.685058 GAGCACCTATCAAATTTCGTGC 58.315 45.455 12.48 12.48 45.32 5.34
6061 8335 3.764885 GCACCTATCAAATTTCGTGCT 57.235 42.857 12.86 0.00 42.49 4.40
6062 8336 4.875544 GCACCTATCAAATTTCGTGCTA 57.124 40.909 12.86 0.00 42.49 3.49
6063 8337 5.424121 GCACCTATCAAATTTCGTGCTAT 57.576 39.130 12.86 0.00 42.49 2.97
6064 8338 5.444122 GCACCTATCAAATTTCGTGCTATC 58.556 41.667 12.86 0.00 42.49 2.08
6065 8339 5.007626 GCACCTATCAAATTTCGTGCTATCA 59.992 40.000 12.86 0.00 42.49 2.15
6066 8340 6.293626 GCACCTATCAAATTTCGTGCTATCAT 60.294 38.462 12.86 0.00 42.49 2.45
6067 8341 7.642669 CACCTATCAAATTTCGTGCTATCATT 58.357 34.615 0.00 0.00 0.00 2.57
6068 8342 8.773645 CACCTATCAAATTTCGTGCTATCATTA 58.226 33.333 0.00 0.00 0.00 1.90
6069 8343 8.993121 ACCTATCAAATTTCGTGCTATCATTAG 58.007 33.333 0.00 0.00 0.00 1.73
6070 8344 9.208022 CCTATCAAATTTCGTGCTATCATTAGA 57.792 33.333 0.00 0.00 0.00 2.10
6073 8347 7.787084 TCAAATTTCGTGCTATCATTAGATCG 58.213 34.615 0.00 0.00 35.67 3.69
6074 8348 7.651704 TCAAATTTCGTGCTATCATTAGATCGA 59.348 33.333 0.00 0.00 35.67 3.59
6075 8349 8.438513 CAAATTTCGTGCTATCATTAGATCGAT 58.561 33.333 0.00 0.00 34.58 3.59
6076 8350 6.934561 TTTCGTGCTATCATTAGATCGATG 57.065 37.500 0.54 5.94 34.58 3.84
6077 8351 5.629079 TCGTGCTATCATTAGATCGATGT 57.371 39.130 0.54 0.00 35.67 3.06
6078 8352 6.737254 TCGTGCTATCATTAGATCGATGTA 57.263 37.500 0.54 0.00 35.67 2.29
6079 8353 7.321745 TCGTGCTATCATTAGATCGATGTAT 57.678 36.000 0.54 0.00 35.67 2.29
6080 8354 7.762382 TCGTGCTATCATTAGATCGATGTATT 58.238 34.615 0.54 0.00 35.67 1.89
6081 8355 7.910683 TCGTGCTATCATTAGATCGATGTATTC 59.089 37.037 0.54 0.00 35.67 1.75
6082 8356 7.912773 CGTGCTATCATTAGATCGATGTATTCT 59.087 37.037 0.54 0.00 35.67 2.40
6083 8357 9.579768 GTGCTATCATTAGATCGATGTATTCTT 57.420 33.333 0.54 0.00 35.67 2.52
6084 8358 9.794685 TGCTATCATTAGATCGATGTATTCTTC 57.205 33.333 0.54 0.00 35.67 2.87
6088 8362 9.868277 ATCATTAGATCGATGTATTCTTCTTCC 57.132 33.333 0.54 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.291540 ACTTGGCGCAATAATATGTGTG 57.708 40.909 10.83 0.00 33.38 3.82
16 17 1.332375 GTGTAACTTCAACTTGGCGCA 59.668 47.619 10.83 0.00 0.00 6.09
17 18 1.332375 TGTGTAACTTCAACTTGGCGC 59.668 47.619 0.00 0.00 38.04 6.53
18 19 2.286772 GGTGTGTAACTTCAACTTGGCG 60.287 50.000 0.00 0.00 38.04 5.69
19 20 2.949644 AGGTGTGTAACTTCAACTTGGC 59.050 45.455 0.00 0.00 38.04 4.52
20 21 5.576447 AAAGGTGTGTAACTTCAACTTGG 57.424 39.130 0.00 0.00 40.14 3.61
52 57 4.557695 CGATGATCAAGTGGGTAGCTCTAC 60.558 50.000 0.00 0.00 35.40 2.59
61 66 1.683943 AATGGCGATGATCAAGTGGG 58.316 50.000 0.00 0.00 0.00 4.61
79 84 6.885952 TTGGACGGTCAGATTTTGATTTAA 57.114 33.333 10.76 0.00 38.29 1.52
116 121 2.808543 GAGGGTTCATAATGATCCACGC 59.191 50.000 0.00 0.00 37.85 5.34
117 122 4.071961 TGAGGGTTCATAATGATCCACG 57.928 45.455 0.00 0.00 37.85 4.94
150 155 4.537015 AGCTGTTAAACATTTTCACGAGC 58.463 39.130 0.00 0.00 0.00 5.03
189 195 2.041081 ACCAGACAGAGAGAGCAGTAGT 59.959 50.000 0.00 0.00 0.00 2.73
220 228 9.757227 AGAGACAAGCTAATTTGCTAACTATAG 57.243 33.333 14.79 0.00 43.24 1.31
223 231 8.848474 AAAGAGACAAGCTAATTTGCTAACTA 57.152 30.769 14.79 0.00 43.24 2.24
224 232 7.663493 AGAAAGAGACAAGCTAATTTGCTAACT 59.337 33.333 14.79 13.25 43.24 2.24
260 270 4.937201 AAAATTGTTCTCCCAAGGTCAC 57.063 40.909 0.00 0.00 0.00 3.67
307 317 2.363680 ACCATGGATCAGATCGAGTCAC 59.636 50.000 21.47 0.00 0.00 3.67
385 415 9.430399 AGCTTCACCTAATATAAGTTACTGGTA 57.570 33.333 0.00 0.00 0.00 3.25
386 416 8.320338 AGCTTCACCTAATATAAGTTACTGGT 57.680 34.615 0.00 0.00 0.00 4.00
488 661 7.745620 AAATTAATCTTCACAAGACGACCTT 57.254 32.000 0.00 0.00 41.01 3.50
552 735 1.202371 ACTTGTTCTCAACGCGTCTGA 60.202 47.619 14.44 17.15 0.00 3.27
575 758 4.160252 GCATTATTGATCCCACCACTTTGT 59.840 41.667 0.00 0.00 0.00 2.83
632 816 7.232330 TCTCTCTCTCAATATCCTGTATGTTGG 59.768 40.741 0.00 0.00 37.31 3.77
883 1068 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
884 1069 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
885 1070 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
886 1071 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
887 1072 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
888 1073 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
889 1074 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
890 1075 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
891 1076 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
892 1077 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
893 1078 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
894 1079 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
895 1080 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
896 1081 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
897 1082 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
898 1083 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
899 1084 1.522900 CCCCCTCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
915 1100 4.741239 TGAGGGTGAGGCTCCCCC 62.741 72.222 25.90 25.90 45.64 5.40
916 1101 2.610859 TTGAGGGTGAGGCTCCCC 60.611 66.667 25.32 25.32 45.64 4.81
917 1102 2.671682 GTTGAGGGTGAGGCTCCC 59.328 66.667 12.86 12.44 44.90 4.30
918 1103 2.224159 TGGTTGAGGGTGAGGCTCC 61.224 63.158 12.86 3.14 0.00 4.70
919 1104 1.003233 GTGGTTGAGGGTGAGGCTC 60.003 63.158 7.79 7.79 0.00 4.70
920 1105 1.770110 TGTGGTTGAGGGTGAGGCT 60.770 57.895 0.00 0.00 0.00 4.58
921 1106 1.302832 CTGTGGTTGAGGGTGAGGC 60.303 63.158 0.00 0.00 0.00 4.70
922 1107 1.302832 GCTGTGGTTGAGGGTGAGG 60.303 63.158 0.00 0.00 0.00 3.86
923 1108 0.321122 GAGCTGTGGTTGAGGGTGAG 60.321 60.000 0.00 0.00 0.00 3.51
924 1109 1.053835 TGAGCTGTGGTTGAGGGTGA 61.054 55.000 0.00 0.00 0.00 4.02
961 1394 6.423302 GCAACACTGATCTATGGATGTAAGAG 59.577 42.308 0.00 0.00 31.46 2.85
973 1406 7.416438 GGTTAGTTAGCTAGCAACACTGATCTA 60.416 40.741 18.83 3.77 31.13 1.98
984 1421 3.432186 CCTGCATGGTTAGTTAGCTAGCA 60.432 47.826 18.83 4.52 34.96 3.49
999 1436 2.747460 CCCGTCACCACCTGCATG 60.747 66.667 0.00 0.00 0.00 4.06
1236 1673 2.794282 GCGCACAATGAACTTGTCAACA 60.794 45.455 0.30 0.00 44.99 3.33
1257 1694 1.203065 GTTTATTAGGGCCGTCGACG 58.797 55.000 30.33 30.33 39.44 5.12
1263 1700 1.880027 GCATCAGGTTTATTAGGGCCG 59.120 52.381 0.00 0.00 0.00 6.13
1314 1751 4.942852 TGTTAAACAAGTTGGCCATCTTG 58.057 39.130 37.95 37.95 44.29 3.02
1366 1803 6.268387 ACATCTTTGTTGATTTCCTTGATGGT 59.732 34.615 0.00 0.00 34.77 3.55
1441 1885 3.426615 TCGGCCACAAAAATCATAGGTT 58.573 40.909 2.24 0.00 0.00 3.50
1511 1955 6.842437 ATAGAAGTACATGCCGATAGTGAT 57.158 37.500 0.00 0.00 0.00 3.06
1570 2020 0.916358 ACCTGGGAGGGGAAGATGTG 60.916 60.000 0.00 0.00 40.58 3.21
1584 2034 6.420903 CACAATATTATCGACTGTGTACCTGG 59.579 42.308 0.00 0.00 34.13 4.45
1858 2308 4.813219 TGGATTCTGACCAACCGGAACG 62.813 54.545 9.46 0.00 42.93 3.95
1879 2329 7.461749 TGTCCCTGAAAATCTTCTTTATGTCT 58.538 34.615 0.00 0.00 32.33 3.41
2012 2462 3.626924 GTGACTGGGCGAGGGTGT 61.627 66.667 0.51 0.00 0.00 4.16
2027 2478 1.266718 CACCAGGAACATTTGACCGTG 59.733 52.381 0.00 0.00 0.00 4.94
2104 2566 5.297547 CAGCGGAAAGTATTCTAAGCCATA 58.702 41.667 0.00 0.00 35.79 2.74
2229 3184 5.875930 AGTTAAACAACTTCGTCCAACAAG 58.124 37.500 0.00 0.00 0.00 3.16
2233 3188 7.148355 AGAAAAGTTAAACAACTTCGTCCAA 57.852 32.000 3.43 0.00 41.76 3.53
2238 3193 7.860872 AGCCAATAGAAAAGTTAAACAACTTCG 59.139 33.333 3.43 0.00 41.76 3.79
2241 3196 8.465273 AGAGCCAATAGAAAAGTTAAACAACT 57.535 30.769 0.00 0.00 33.76 3.16
2245 3200 6.543736 CCGAGAGCCAATAGAAAAGTTAAAC 58.456 40.000 0.00 0.00 0.00 2.01
2246 3201 5.123344 GCCGAGAGCCAATAGAAAAGTTAAA 59.877 40.000 0.00 0.00 34.35 1.52
2309 3353 4.973168 TCAGAACCACTAACATTTGAGCT 58.027 39.130 0.00 0.00 0.00 4.09
2391 3869 3.896888 TCAAATTCACAATCTGGTGGCTT 59.103 39.130 0.00 0.00 39.27 4.35
2417 3895 8.970859 AAATGTCAAACCAAATAACCAAATGA 57.029 26.923 0.00 0.00 0.00 2.57
2464 3942 9.593134 CTATAGCCTGTATAATGACCTCAAATC 57.407 37.037 0.00 0.00 0.00 2.17
2483 3968 8.195436 TGTAGTCACTGTTATGAAACTATAGCC 58.805 37.037 0.00 0.00 36.51 3.93
2557 4044 5.695816 GGTGTCAAAGCAAAAATAGCATTCA 59.304 36.000 0.00 0.00 0.00 2.57
2562 4049 5.346822 CAGATGGTGTCAAAGCAAAAATAGC 59.653 40.000 0.00 0.00 40.33 2.97
2580 4067 9.163899 CATTATTATGACCTGAGAATCAGATGG 57.836 37.037 8.35 0.00 40.94 3.51
2633 4121 2.490902 GGGGACACCAGATTCCAAACTT 60.491 50.000 0.00 0.00 39.85 2.66
2705 4196 9.102757 CACAAGATCTAATAAAGCGCCATATAT 57.897 33.333 2.29 0.00 0.00 0.86
2724 4215 4.329392 TGTTGATGCACAGATCACAAGAT 58.671 39.130 0.00 0.00 37.13 2.40
2725 4216 3.742385 TGTTGATGCACAGATCACAAGA 58.258 40.909 0.00 0.00 31.92 3.02
2877 4368 5.529800 GGATACACTAAATATGCGGGTTGTT 59.470 40.000 0.00 0.00 0.00 2.83
2949 4440 6.119536 CCTTGTAGAGTCACTATCTGAGAGT 58.880 44.000 0.00 0.00 33.39 3.24
3102 4593 1.869767 GGCTTTATCTGATGACCAGCG 59.130 52.381 0.00 0.00 42.62 5.18
3432 4923 2.861935 ACGACAACTTTGTACTTCACGG 59.138 45.455 0.00 0.00 42.43 4.94
3615 5107 9.469807 GACCTTACTTGTGATATACTCATTGAG 57.530 37.037 12.17 12.17 35.97 3.02
3757 5249 8.047310 GTGAAATAAATACCCGATATCCCTCAT 58.953 37.037 0.00 0.00 0.00 2.90
3875 6022 4.389992 GCAACACTCTCATCTCGAAATTGA 59.610 41.667 0.00 0.00 0.00 2.57
3882 6029 0.109086 ACGGCAACACTCTCATCTCG 60.109 55.000 0.00 0.00 0.00 4.04
4029 6176 4.093952 CGGCCAAGCTCTTGCACG 62.094 66.667 2.24 6.88 42.74 5.34
4045 6192 0.460987 CTCCTTAGTCTTGCCAGGCG 60.461 60.000 7.03 0.00 0.00 5.52
4046 6193 0.107459 CCTCCTTAGTCTTGCCAGGC 60.107 60.000 3.66 3.66 0.00 4.85
4056 6203 3.584848 AGTGAATGTCAAGCCTCCTTAGT 59.415 43.478 0.00 0.00 0.00 2.24
4059 6206 3.181440 TGAAGTGAATGTCAAGCCTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
4064 6211 3.057033 AGCAATGAAGTGAATGTCAAGCC 60.057 43.478 0.00 0.00 32.41 4.35
4068 6215 4.143543 TCCAAGCAATGAAGTGAATGTCA 58.856 39.130 0.00 0.00 0.00 3.58
4081 6228 1.222936 CCTCGAGGCTCCAAGCAAT 59.777 57.895 20.67 0.00 44.75 3.56
4315 6463 7.601886 CACATCCTTGACTATGATATGAACCTC 59.398 40.741 0.00 0.00 0.00 3.85
4318 6466 6.707608 TGCACATCCTTGACTATGATATGAAC 59.292 38.462 0.00 0.00 0.00 3.18
4350 6498 2.309755 TCTCCCAAGGATTTGCACATCT 59.690 45.455 12.39 0.00 32.79 2.90
4399 6547 2.837291 TGTTTGGTGGGTGCTGCC 60.837 61.111 0.00 0.00 0.00 4.85
4429 6577 2.484417 GGAACTCATCTGCACCGATGAT 60.484 50.000 16.47 5.65 46.17 2.45
4500 6648 2.699846 TGGCAAAGCTCCTTGTTGAAAT 59.300 40.909 0.00 0.00 0.00 2.17
4544 6692 4.446413 CCACCCGTACGCCCAGAC 62.446 72.222 10.49 0.00 0.00 3.51
4554 6702 0.609131 CATCTTCTTTGGCCACCCGT 60.609 55.000 3.88 0.00 0.00 5.28
4605 6753 2.036992 ACTCTGAAGTGAGAGCAGGTTG 59.963 50.000 0.00 0.00 42.98 3.77
4650 6798 1.967319 CTTCCATATTGGTGACCCCG 58.033 55.000 0.00 0.00 39.03 5.73
4705 6863 1.843851 TGGATGGTTAGGATGGGTGTC 59.156 52.381 0.00 0.00 0.00 3.67
4727 6885 6.649155 TCTGGATCCAAATGAAGATTAACGA 58.351 36.000 17.00 1.00 0.00 3.85
4729 6887 8.688747 ATCTCTGGATCCAAATGAAGATTAAC 57.311 34.615 17.00 0.00 0.00 2.01
4732 6890 7.823310 CGATATCTCTGGATCCAAATGAAGATT 59.177 37.037 17.00 9.41 33.71 2.40
4738 6896 5.411831 TCCGATATCTCTGGATCCAAATG 57.588 43.478 17.00 8.80 33.71 2.32
4741 6899 3.834813 CCTTCCGATATCTCTGGATCCAA 59.165 47.826 17.00 0.60 33.71 3.53
4756 6914 6.646240 GTGTTATTGTAGTTTGTACCTTCCGA 59.354 38.462 0.00 0.00 0.00 4.55
4758 6916 6.424812 ACGTGTTATTGTAGTTTGTACCTTCC 59.575 38.462 0.00 0.00 0.00 3.46
4794 6955 7.706281 ACGAGATACACTGAATTCATTCATC 57.294 36.000 8.96 9.42 44.92 2.92
4822 6983 6.331369 CAGGAGTGCAGAAAGGAATAAAAA 57.669 37.500 0.00 0.00 0.00 1.94
4855 7019 1.028330 CGGAGGAAGCATGTGCATGT 61.028 55.000 12.96 0.00 45.16 3.21
4872 7036 5.565259 GCGAAAATGAGCAACATATTATCGG 59.435 40.000 14.86 0.00 38.38 4.18
4873 7037 5.565259 GGCGAAAATGAGCAACATATTATCG 59.435 40.000 0.00 2.14 38.38 2.92
4874 7038 6.672147 AGGCGAAAATGAGCAACATATTATC 58.328 36.000 0.00 0.00 38.38 1.75
4876 7040 5.822519 AGAGGCGAAAATGAGCAACATATTA 59.177 36.000 0.00 0.00 38.38 0.98
4877 7041 4.641989 AGAGGCGAAAATGAGCAACATATT 59.358 37.500 0.00 0.00 38.38 1.28
4907 7090 7.962441 TCCTCATCATCGGTATCTTAATTTGA 58.038 34.615 0.00 0.00 0.00 2.69
4959 7142 0.460284 TCTTTCTCCTTCATCGCCGC 60.460 55.000 0.00 0.00 0.00 6.53
4962 7178 3.535561 TCCATTCTTTCTCCTTCATCGC 58.464 45.455 0.00 0.00 0.00 4.58
4963 7179 5.466058 CAGATCCATTCTTTCTCCTTCATCG 59.534 44.000 0.00 0.00 29.93 3.84
5038 7270 3.088532 AGCTAGGATCTAAGATGGAGCG 58.911 50.000 0.00 0.00 33.91 5.03
5046 7278 4.749099 GCAATGTGTGAGCTAGGATCTAAG 59.251 45.833 0.00 0.00 0.00 2.18
5055 7287 2.703416 CAAGAGGCAATGTGTGAGCTA 58.297 47.619 0.00 0.00 0.00 3.32
5123 7357 8.146412 ACCTATAAAATCCGTATGTGTACTTCC 58.854 37.037 0.00 0.00 0.00 3.46
5150 7388 0.611200 TTCATCACCTGGTACGTGGG 59.389 55.000 0.00 0.00 0.00 4.61
5180 7418 8.419442 AGCCAAGATTTTTATCCATTTCATCTC 58.581 33.333 0.00 0.00 0.00 2.75
5182 7420 7.440255 CCAGCCAAGATTTTTATCCATTTCATC 59.560 37.037 0.00 0.00 0.00 2.92
5204 7443 0.033504 TCCTGTTCTTCGACACCAGC 59.966 55.000 0.00 0.00 0.00 4.85
5208 7447 3.577649 TCAGATCCTGTTCTTCGACAC 57.422 47.619 0.00 0.00 32.61 3.67
5252 7509 1.586042 CAAGCGCTTGCGTTGTTGT 60.586 52.632 34.84 0.27 45.69 3.32
5262 7519 1.156736 ACTGAATAACGCAAGCGCTT 58.843 45.000 18.98 18.98 44.19 4.68
5301 7558 8.240883 AGCAGTACAACGAGAAGTTATTAAAG 57.759 34.615 0.00 0.00 42.02 1.85
5337 7594 3.451902 GCAATCAGATGAATGGGGGAAAA 59.548 43.478 0.39 0.00 0.00 2.29
5361 7618 9.661563 TGACCGTATATAATCAGTTCAAACTTT 57.338 29.630 0.00 0.00 37.08 2.66
5479 7742 2.939103 GCTCCAGTCACATGATGGTAAC 59.061 50.000 0.00 0.00 35.51 2.50
5501 7764 0.537653 AAAGCTTCCTCCGGCTCTAC 59.462 55.000 0.00 0.00 37.87 2.59
5505 7768 0.393537 CATGAAAGCTTCCTCCGGCT 60.394 55.000 0.00 0.00 40.85 5.52
5516 7779 2.225019 CCGCATAGGACATCATGAAAGC 59.775 50.000 0.00 0.00 45.00 3.51
5522 7786 0.601046 CGTGCCGCATAGGACATCAT 60.601 55.000 0.00 0.00 45.00 2.45
5540 7805 2.093152 GCGCCGAAATGTATATTACCCG 59.907 50.000 0.00 0.00 0.00 5.28
5544 7809 7.528481 AATTATCGCGCCGAAATGTATATTA 57.472 32.000 0.00 0.00 39.99 0.98
5579 7844 9.574458 GTGATGTAATATGCCATAGTAGTAGTG 57.426 37.037 0.00 0.00 0.00 2.74
5580 7845 9.535170 AGTGATGTAATATGCCATAGTAGTAGT 57.465 33.333 0.00 0.00 0.00 2.73
5594 7859 7.582909 TGGCCCCTAATTAGTGATGTAATAT 57.417 36.000 11.50 0.00 0.00 1.28
5595 7860 7.582909 ATGGCCCCTAATTAGTGATGTAATA 57.417 36.000 11.50 0.00 0.00 0.98
5597 7862 5.922960 ATGGCCCCTAATTAGTGATGTAA 57.077 39.130 11.50 0.00 0.00 2.41
5614 7880 2.706190 AGTGGTAGACTCCAATATGGCC 59.294 50.000 0.00 0.00 39.34 5.36
5630 7896 1.105167 TCGGTCAAGACACGAGTGGT 61.105 55.000 8.19 0.00 32.89 4.16
5644 7918 1.166989 TTTAAAATGGCCCGTCGGTC 58.833 50.000 11.06 0.00 0.00 4.79
5650 7924 2.757868 TGAGTGGATTTAAAATGGCCCG 59.242 45.455 0.00 0.00 0.00 6.13
5653 7927 6.759497 AGTACTGAGTGGATTTAAAATGGC 57.241 37.500 0.00 0.00 0.00 4.40
5665 7939 5.450688 GGCATACTACTGAAGTACTGAGTGG 60.451 48.000 15.14 14.52 43.47 4.00
5667 7941 4.645588 GGGCATACTACTGAAGTACTGAGT 59.354 45.833 11.51 11.51 43.47 3.41
5671 7945 5.208890 TGATGGGCATACTACTGAAGTACT 58.791 41.667 0.00 0.00 43.47 2.73
5674 7948 6.077993 TCTATGATGGGCATACTACTGAAGT 58.922 40.000 0.00 0.00 42.62 3.01
5697 7971 7.923436 GGCGTACCATGCATGAAAAATTCATC 61.923 42.308 28.31 6.03 41.38 2.92
5701 7975 3.056250 TGGCGTACCATGCATGAAAAATT 60.056 39.130 28.31 7.12 42.67 1.82
5720 7994 2.735762 CGAGCTAAACTCCTACAGTGGC 60.736 54.545 0.00 0.00 43.01 5.01
5722 7996 2.531206 GCGAGCTAAACTCCTACAGTG 58.469 52.381 0.00 0.00 43.01 3.66
5735 8009 1.035385 TCGTCATCCAAGGCGAGCTA 61.035 55.000 0.00 0.00 0.00 3.32
5738 8012 0.108615 AGTTCGTCATCCAAGGCGAG 60.109 55.000 0.00 0.00 34.78 5.03
5742 8016 2.350522 CCTTCAGTTCGTCATCCAAGG 58.649 52.381 0.00 0.00 0.00 3.61
5761 8035 3.545703 AGGCACAATCTACACATTAGCC 58.454 45.455 0.00 0.00 36.81 3.93
5762 8036 5.335127 CAAAGGCACAATCTACACATTAGC 58.665 41.667 0.00 0.00 0.00 3.09
5764 8038 4.704540 CCCAAAGGCACAATCTACACATTA 59.295 41.667 0.00 0.00 0.00 1.90
5771 8045 2.214376 CCACCCAAAGGCACAATCTA 57.786 50.000 0.00 0.00 36.11 1.98
5790 8064 1.400242 GCGATGGGAAATTAGATGCGC 60.400 52.381 0.00 0.00 35.08 6.09
5796 8070 2.880890 CTGGGAAGCGATGGGAAATTAG 59.119 50.000 0.00 0.00 0.00 1.73
5800 8074 0.035439 GACTGGGAAGCGATGGGAAA 60.035 55.000 0.00 0.00 0.00 3.13
5806 8080 0.909610 TCTTGGGACTGGGAAGCGAT 60.910 55.000 0.00 0.00 0.00 4.58
5808 8082 1.376037 GTCTTGGGACTGGGAAGCG 60.376 63.158 0.00 0.00 39.24 4.68
5817 8091 1.692519 ACCTAGTGTGTGTCTTGGGAC 59.307 52.381 0.00 0.00 42.42 4.46
5828 8102 5.097742 TGAATGGATGGTAACCTAGTGTG 57.902 43.478 0.00 0.00 0.00 3.82
5840 8114 3.305403 GCTGCATGAATCTGAATGGATGG 60.305 47.826 0.00 0.00 0.00 3.51
5869 8143 1.334869 GTGGGAGCAATTATGAAGCCG 59.665 52.381 0.00 0.00 0.00 5.52
5870 8144 2.659428 AGTGGGAGCAATTATGAAGCC 58.341 47.619 0.00 0.00 0.00 4.35
5871 8145 6.211515 CAATTAGTGGGAGCAATTATGAAGC 58.788 40.000 0.00 0.00 0.00 3.86
5872 8146 6.742109 CCAATTAGTGGGAGCAATTATGAAG 58.258 40.000 0.00 0.00 44.64 3.02
5873 8147 6.713762 CCAATTAGTGGGAGCAATTATGAA 57.286 37.500 0.00 0.00 44.64 2.57
5893 8167 9.881649 GACATGCATAGAGAAGATATAATCCAA 57.118 33.333 0.00 0.00 0.00 3.53
5894 8168 9.264653 AGACATGCATAGAGAAGATATAATCCA 57.735 33.333 0.00 0.00 0.00 3.41
5900 8174 7.975058 CGATGAAGACATGCATAGAGAAGATAT 59.025 37.037 0.00 0.00 36.82 1.63
5901 8175 7.040132 ACGATGAAGACATGCATAGAGAAGATA 60.040 37.037 0.00 0.00 36.82 1.98
5902 8176 6.157904 CGATGAAGACATGCATAGAGAAGAT 58.842 40.000 0.00 0.00 36.82 2.40
5903 8177 5.068329 ACGATGAAGACATGCATAGAGAAGA 59.932 40.000 0.00 0.00 36.82 2.87
5904 8178 5.288015 ACGATGAAGACATGCATAGAGAAG 58.712 41.667 0.00 0.00 36.82 2.85
5905 8179 5.268118 ACGATGAAGACATGCATAGAGAA 57.732 39.130 0.00 0.00 36.82 2.87
5906 8180 4.926140 ACGATGAAGACATGCATAGAGA 57.074 40.909 0.00 0.00 36.82 3.10
5907 8181 5.045872 TCAACGATGAAGACATGCATAGAG 58.954 41.667 0.00 0.00 36.82 2.43
5908 8182 5.009854 TCAACGATGAAGACATGCATAGA 57.990 39.130 0.00 0.00 36.82 1.98
5909 8183 5.695363 AGATCAACGATGAAGACATGCATAG 59.305 40.000 0.00 0.00 39.49 2.23
5910 8184 5.464389 CAGATCAACGATGAAGACATGCATA 59.536 40.000 0.00 0.00 39.49 3.14
5911 8185 4.272748 CAGATCAACGATGAAGACATGCAT 59.727 41.667 0.00 0.00 39.49 3.96
5912 8186 3.619929 CAGATCAACGATGAAGACATGCA 59.380 43.478 0.00 0.00 39.49 3.96
5913 8187 3.620374 ACAGATCAACGATGAAGACATGC 59.380 43.478 0.00 0.00 39.49 4.06
5914 8188 4.033702 CCACAGATCAACGATGAAGACATG 59.966 45.833 0.00 0.00 39.49 3.21
5915 8189 4.186926 CCACAGATCAACGATGAAGACAT 58.813 43.478 0.00 0.00 39.49 3.06
5916 8190 3.588955 CCACAGATCAACGATGAAGACA 58.411 45.455 0.00 0.00 39.49 3.41
5917 8191 2.349886 GCCACAGATCAACGATGAAGAC 59.650 50.000 0.00 0.00 39.49 3.01
5918 8192 2.234661 AGCCACAGATCAACGATGAAGA 59.765 45.455 0.00 0.00 39.49 2.87
5919 8193 2.625737 AGCCACAGATCAACGATGAAG 58.374 47.619 0.00 0.00 39.49 3.02
5920 8194 2.768253 AGCCACAGATCAACGATGAA 57.232 45.000 0.00 0.00 39.49 2.57
5921 8195 2.234661 AGAAGCCACAGATCAACGATGA 59.765 45.455 0.00 0.00 40.57 2.92
5922 8196 2.606725 GAGAAGCCACAGATCAACGATG 59.393 50.000 0.00 0.00 0.00 3.84
5923 8197 2.736719 CGAGAAGCCACAGATCAACGAT 60.737 50.000 0.00 0.00 0.00 3.73
5924 8198 1.402852 CGAGAAGCCACAGATCAACGA 60.403 52.381 0.00 0.00 0.00 3.85
5925 8199 0.994995 CGAGAAGCCACAGATCAACG 59.005 55.000 0.00 0.00 0.00 4.10
5926 8200 2.266554 CTCGAGAAGCCACAGATCAAC 58.733 52.381 6.58 0.00 0.00 3.18
5927 8201 1.404717 GCTCGAGAAGCCACAGATCAA 60.405 52.381 18.75 0.00 45.92 2.57
5928 8202 0.174389 GCTCGAGAAGCCACAGATCA 59.826 55.000 18.75 0.00 45.92 2.92
5929 8203 2.970576 GCTCGAGAAGCCACAGATC 58.029 57.895 18.75 0.00 45.92 2.75
5938 8212 2.740981 AGAAATGTGCAAGCTCGAGAAG 59.259 45.455 18.75 5.69 0.00 2.85
5939 8213 2.771089 AGAAATGTGCAAGCTCGAGAA 58.229 42.857 18.75 0.00 0.00 2.87
5940 8214 2.462456 AGAAATGTGCAAGCTCGAGA 57.538 45.000 18.75 0.00 0.00 4.04
5941 8215 3.188048 AGAAAGAAATGTGCAAGCTCGAG 59.812 43.478 8.45 8.45 0.00 4.04
5942 8216 3.141398 AGAAAGAAATGTGCAAGCTCGA 58.859 40.909 0.00 0.00 0.00 4.04
5943 8217 3.549299 AGAAAGAAATGTGCAAGCTCG 57.451 42.857 0.00 0.00 0.00 5.03
5944 8218 6.292542 GGAAAAAGAAAGAAATGTGCAAGCTC 60.293 38.462 0.00 0.00 0.00 4.09
5945 8219 5.525012 GGAAAAAGAAAGAAATGTGCAAGCT 59.475 36.000 0.00 0.00 0.00 3.74
5946 8220 5.294060 TGGAAAAAGAAAGAAATGTGCAAGC 59.706 36.000 0.00 0.00 0.00 4.01
5947 8221 6.907206 TGGAAAAAGAAAGAAATGTGCAAG 57.093 33.333 0.00 0.00 0.00 4.01
5948 8222 7.769970 AGAATGGAAAAAGAAAGAAATGTGCAA 59.230 29.630 0.00 0.00 0.00 4.08
5949 8223 7.274447 AGAATGGAAAAAGAAAGAAATGTGCA 58.726 30.769 0.00 0.00 0.00 4.57
5950 8224 7.719778 AGAATGGAAAAAGAAAGAAATGTGC 57.280 32.000 0.00 0.00 0.00 4.57
5956 8230 9.421399 ACCTCTTTAGAATGGAAAAAGAAAGAA 57.579 29.630 0.00 0.00 38.42 2.52
5957 8231 8.996651 ACCTCTTTAGAATGGAAAAAGAAAGA 57.003 30.769 0.00 0.00 38.42 2.52
5961 8235 9.162764 CGATTACCTCTTTAGAATGGAAAAAGA 57.837 33.333 0.00 0.00 37.00 2.52
5962 8236 8.947115 ACGATTACCTCTTTAGAATGGAAAAAG 58.053 33.333 0.00 0.00 0.00 2.27
5963 8237 8.857694 ACGATTACCTCTTTAGAATGGAAAAA 57.142 30.769 0.00 0.00 0.00 1.94
5964 8238 8.726988 CAACGATTACCTCTTTAGAATGGAAAA 58.273 33.333 0.00 0.00 0.00 2.29
5965 8239 7.148306 GCAACGATTACCTCTTTAGAATGGAAA 60.148 37.037 0.00 0.00 0.00 3.13
5966 8240 6.315393 GCAACGATTACCTCTTTAGAATGGAA 59.685 38.462 0.00 0.00 0.00 3.53
5967 8241 5.815740 GCAACGATTACCTCTTTAGAATGGA 59.184 40.000 0.00 0.00 0.00 3.41
5968 8242 5.817816 AGCAACGATTACCTCTTTAGAATGG 59.182 40.000 0.00 0.00 0.00 3.16
5969 8243 6.910536 AGCAACGATTACCTCTTTAGAATG 57.089 37.500 0.00 0.00 0.00 2.67
5970 8244 7.390718 ACAAAGCAACGATTACCTCTTTAGAAT 59.609 33.333 0.00 0.00 0.00 2.40
5971 8245 6.708949 ACAAAGCAACGATTACCTCTTTAGAA 59.291 34.615 0.00 0.00 0.00 2.10
5972 8246 6.228258 ACAAAGCAACGATTACCTCTTTAGA 58.772 36.000 0.00 0.00 0.00 2.10
5973 8247 6.481954 ACAAAGCAACGATTACCTCTTTAG 57.518 37.500 0.00 0.00 0.00 1.85
5974 8248 8.038944 AGATACAAAGCAACGATTACCTCTTTA 58.961 33.333 0.00 0.00 0.00 1.85
5975 8249 6.879458 AGATACAAAGCAACGATTACCTCTTT 59.121 34.615 0.00 0.00 0.00 2.52
5976 8250 6.407202 AGATACAAAGCAACGATTACCTCTT 58.593 36.000 0.00 0.00 0.00 2.85
5977 8251 5.978814 AGATACAAAGCAACGATTACCTCT 58.021 37.500 0.00 0.00 0.00 3.69
5978 8252 7.766219 TTAGATACAAAGCAACGATTACCTC 57.234 36.000 0.00 0.00 0.00 3.85
5979 8253 8.204836 AGATTAGATACAAAGCAACGATTACCT 58.795 33.333 0.00 0.00 0.00 3.08
5980 8254 8.366671 AGATTAGATACAAAGCAACGATTACC 57.633 34.615 0.00 0.00 0.00 2.85
5981 8255 9.031360 TGAGATTAGATACAAAGCAACGATTAC 57.969 33.333 0.00 0.00 0.00 1.89
5982 8256 9.764363 ATGAGATTAGATACAAAGCAACGATTA 57.236 29.630 0.00 0.00 0.00 1.75
5983 8257 8.668510 ATGAGATTAGATACAAAGCAACGATT 57.331 30.769 0.00 0.00 0.00 3.34
5984 8258 8.147058 AGATGAGATTAGATACAAAGCAACGAT 58.853 33.333 0.00 0.00 0.00 3.73
5985 8259 7.492524 AGATGAGATTAGATACAAAGCAACGA 58.507 34.615 0.00 0.00 0.00 3.85
5986 8260 7.651304 AGAGATGAGATTAGATACAAAGCAACG 59.349 37.037 0.00 0.00 0.00 4.10
5987 8261 8.885494 AGAGATGAGATTAGATACAAAGCAAC 57.115 34.615 0.00 0.00 0.00 4.17
5989 8263 8.303156 GCTAGAGATGAGATTAGATACAAAGCA 58.697 37.037 0.00 0.00 0.00 3.91
5990 8264 7.759433 GGCTAGAGATGAGATTAGATACAAAGC 59.241 40.741 0.00 0.00 0.00 3.51
5991 8265 9.023962 AGGCTAGAGATGAGATTAGATACAAAG 57.976 37.037 0.00 0.00 0.00 2.77
5992 8266 8.948401 AGGCTAGAGATGAGATTAGATACAAA 57.052 34.615 0.00 0.00 0.00 2.83
5993 8267 8.166726 TGAGGCTAGAGATGAGATTAGATACAA 58.833 37.037 0.00 0.00 0.00 2.41
5994 8268 7.694093 TGAGGCTAGAGATGAGATTAGATACA 58.306 38.462 0.00 0.00 0.00 2.29
5995 8269 8.458843 GTTGAGGCTAGAGATGAGATTAGATAC 58.541 40.741 0.00 0.00 0.00 2.24
5996 8270 8.390143 AGTTGAGGCTAGAGATGAGATTAGATA 58.610 37.037 0.00 0.00 0.00 1.98
5997 8271 7.240897 AGTTGAGGCTAGAGATGAGATTAGAT 58.759 38.462 0.00 0.00 0.00 1.98
5998 8272 6.609876 AGTTGAGGCTAGAGATGAGATTAGA 58.390 40.000 0.00 0.00 0.00 2.10
5999 8273 6.716628 AGAGTTGAGGCTAGAGATGAGATTAG 59.283 42.308 0.00 0.00 0.00 1.73
6000 8274 6.609876 AGAGTTGAGGCTAGAGATGAGATTA 58.390 40.000 0.00 0.00 0.00 1.75
6001 8275 5.457686 AGAGTTGAGGCTAGAGATGAGATT 58.542 41.667 0.00 0.00 0.00 2.40
6002 8276 5.065613 AGAGTTGAGGCTAGAGATGAGAT 57.934 43.478 0.00 0.00 0.00 2.75
6003 8277 4.518278 AGAGTTGAGGCTAGAGATGAGA 57.482 45.455 0.00 0.00 0.00 3.27
6004 8278 6.003326 TGATAGAGTTGAGGCTAGAGATGAG 58.997 44.000 0.00 0.00 0.00 2.90
6005 8279 5.946486 TGATAGAGTTGAGGCTAGAGATGA 58.054 41.667 0.00 0.00 0.00 2.92
6006 8280 6.446318 GTTGATAGAGTTGAGGCTAGAGATG 58.554 44.000 0.00 0.00 0.00 2.90
6007 8281 5.240623 CGTTGATAGAGTTGAGGCTAGAGAT 59.759 44.000 0.00 0.00 0.00 2.75
6008 8282 4.576873 CGTTGATAGAGTTGAGGCTAGAGA 59.423 45.833 0.00 0.00 0.00 3.10
6009 8283 4.576873 TCGTTGATAGAGTTGAGGCTAGAG 59.423 45.833 0.00 0.00 0.00 2.43
6010 8284 4.524053 TCGTTGATAGAGTTGAGGCTAGA 58.476 43.478 0.00 0.00 0.00 2.43
6011 8285 4.336993 ACTCGTTGATAGAGTTGAGGCTAG 59.663 45.833 0.00 0.00 45.74 3.42
6012 8286 4.096532 CACTCGTTGATAGAGTTGAGGCTA 59.903 45.833 0.00 0.00 45.74 3.93
6013 8287 3.093057 ACTCGTTGATAGAGTTGAGGCT 58.907 45.455 0.00 0.00 45.74 4.58
6014 8288 3.182967 CACTCGTTGATAGAGTTGAGGC 58.817 50.000 0.00 0.00 45.74 4.70
6015 8289 3.182967 GCACTCGTTGATAGAGTTGAGG 58.817 50.000 0.00 0.00 45.74 3.86
6016 8290 3.610242 GTGCACTCGTTGATAGAGTTGAG 59.390 47.826 10.32 0.00 45.74 3.02
6017 8291 3.575630 GTGCACTCGTTGATAGAGTTGA 58.424 45.455 10.32 0.00 45.74 3.18
6018 8292 2.342651 CGTGCACTCGTTGATAGAGTTG 59.657 50.000 16.19 0.00 45.74 3.16
6019 8293 2.228103 TCGTGCACTCGTTGATAGAGTT 59.772 45.455 16.19 0.00 45.74 3.01
6021 8295 2.445316 CTCGTGCACTCGTTGATAGAG 58.555 52.381 16.19 6.74 41.27 2.43
6022 8296 1.467543 GCTCGTGCACTCGTTGATAGA 60.468 52.381 16.19 0.01 39.41 1.98
6023 8297 0.917259 GCTCGTGCACTCGTTGATAG 59.083 55.000 16.19 0.00 39.41 2.08
6024 8298 0.242555 TGCTCGTGCACTCGTTGATA 59.757 50.000 16.19 0.00 45.31 2.15
6025 8299 1.006220 TGCTCGTGCACTCGTTGAT 60.006 52.632 16.19 0.00 45.31 2.57
6026 8300 2.415426 TGCTCGTGCACTCGTTGA 59.585 55.556 16.19 3.11 45.31 3.18
6035 8309 3.685058 GAAATTTGATAGGTGCTCGTGC 58.315 45.455 1.71 1.71 40.20 5.34
6036 8310 3.370978 ACGAAATTTGATAGGTGCTCGTG 59.629 43.478 0.00 0.00 36.95 4.35
6037 8311 3.370978 CACGAAATTTGATAGGTGCTCGT 59.629 43.478 0.00 0.00 38.71 4.18
6038 8312 3.785505 GCACGAAATTTGATAGGTGCTCG 60.786 47.826 15.12 4.65 45.27 5.03
6039 8313 3.685058 GCACGAAATTTGATAGGTGCTC 58.315 45.455 15.12 0.00 45.27 4.26
6040 8314 3.764885 GCACGAAATTTGATAGGTGCT 57.235 42.857 15.12 0.00 45.27 4.40
6042 8316 6.603237 TGATAGCACGAAATTTGATAGGTG 57.397 37.500 0.00 0.00 0.00 4.00
6043 8317 7.807977 AATGATAGCACGAAATTTGATAGGT 57.192 32.000 0.00 0.00 0.00 3.08
6044 8318 9.208022 TCTAATGATAGCACGAAATTTGATAGG 57.792 33.333 0.00 0.00 0.00 2.57
6047 8321 8.438513 CGATCTAATGATAGCACGAAATTTGAT 58.561 33.333 0.00 0.00 33.00 2.57
6048 8322 7.651704 TCGATCTAATGATAGCACGAAATTTGA 59.348 33.333 0.00 0.00 35.36 2.69
6049 8323 7.787084 TCGATCTAATGATAGCACGAAATTTG 58.213 34.615 0.00 0.00 35.36 2.32
6050 8324 7.946655 TCGATCTAATGATAGCACGAAATTT 57.053 32.000 0.00 0.00 35.36 1.82
6051 8325 7.600375 ACATCGATCTAATGATAGCACGAAATT 59.400 33.333 10.83 0.00 38.64 1.82
6052 8326 7.093354 ACATCGATCTAATGATAGCACGAAAT 58.907 34.615 10.83 0.00 38.64 2.17
6053 8327 6.447162 ACATCGATCTAATGATAGCACGAAA 58.553 36.000 10.83 0.00 38.64 3.46
6054 8328 6.013842 ACATCGATCTAATGATAGCACGAA 57.986 37.500 10.83 0.00 38.64 3.85
6055 8329 5.629079 ACATCGATCTAATGATAGCACGA 57.371 39.130 10.83 0.00 39.07 4.35
6056 8330 7.912773 AGAATACATCGATCTAATGATAGCACG 59.087 37.037 10.83 0.00 32.19 5.34
6057 8331 9.579768 AAGAATACATCGATCTAATGATAGCAC 57.420 33.333 10.83 0.00 32.19 4.40
6058 8332 9.794685 GAAGAATACATCGATCTAATGATAGCA 57.205 33.333 10.83 0.00 32.19 3.49
6062 8336 9.868277 GGAAGAAGAATACATCGATCTAATGAT 57.132 33.333 10.83 0.00 35.26 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.