Multiple sequence alignment - TraesCS5D01G343400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G343400 chr5D 100.000 4998 0 0 1 4998 431566018 431561021 0.000000e+00 9230.0
1 TraesCS5D01G343400 chr5D 82.557 1267 197 17 2616 3873 430581460 430582711 0.000000e+00 1094.0
2 TraesCS5D01G343400 chr5D 88.260 724 57 10 1 701 312054681 312055399 0.000000e+00 841.0
3 TraesCS5D01G343400 chr5D 90.895 637 36 5 1 615 407009981 407009345 0.000000e+00 835.0
4 TraesCS5D01G343400 chr5D 90.597 553 44 3 3373 3921 431537500 431536952 0.000000e+00 726.0
5 TraesCS5D01G343400 chr5D 90.416 553 46 2 3373 3921 489097055 489097604 0.000000e+00 721.0
6 TraesCS5D01G343400 chr5D 83.975 649 81 14 1948 2584 430580758 430581395 7.160000e-168 601.0
7 TraesCS5D01G343400 chr5D 88.477 512 32 11 211 701 232587249 232587754 1.200000e-165 593.0
8 TraesCS5D01G343400 chr5D 98.817 169 2 0 4830 4998 174803544 174803712 8.130000e-78 302.0
9 TraesCS5D01G343400 chr5D 95.522 67 2 1 1953 2019 431537556 431537491 6.840000e-19 106.0
10 TraesCS5D01G343400 chr5B 89.938 3250 225 43 714 3919 521141349 521138158 0.000000e+00 4096.0
11 TraesCS5D01G343400 chr5B 81.487 1237 209 14 2616 3845 520111344 520112567 0.000000e+00 998.0
12 TraesCS5D01G343400 chr5B 84.675 646 85 7 1948 2586 520110606 520111244 2.540000e-177 632.0
13 TraesCS5D01G343400 chr5B 80.938 640 98 14 2249 2866 520114558 520115195 7.520000e-133 484.0
14 TraesCS5D01G343400 chr5A 92.901 1944 119 9 2058 3982 546686433 546684490 0.000000e+00 2808.0
15 TraesCS5D01G343400 chr5A 95.771 804 32 2 4038 4840 580927794 580928596 0.000000e+00 1295.0
16 TraesCS5D01G343400 chr5A 83.004 1265 195 13 2616 3873 546206252 546207503 0.000000e+00 1127.0
17 TraesCS5D01G343400 chr5A 90.265 678 45 7 1 658 308458060 308458736 0.000000e+00 867.0
18 TraesCS5D01G343400 chr5A 87.276 558 31 17 718 1240 546687350 546686798 7.160000e-168 601.0
19 TraesCS5D01G343400 chr5A 82.998 647 93 12 1948 2586 546205550 546206187 2.020000e-158 569.0
20 TraesCS5D01G343400 chr5A 98.225 169 3 0 4830 4998 645417027 645416859 3.780000e-76 296.0
21 TraesCS5D01G343400 chr5A 97.633 169 4 0 4830 4998 522422722 522422890 1.760000e-74 291.0
22 TraesCS5D01G343400 chr5A 79.887 353 51 7 1664 2013 546686766 546686431 1.800000e-59 241.0
23 TraesCS5D01G343400 chr1D 96.646 805 27 0 4036 4840 469095663 469096467 0.000000e+00 1338.0
24 TraesCS5D01G343400 chr1D 96.030 806 31 1 4036 4840 433907707 433908512 0.000000e+00 1310.0
25 TraesCS5D01G343400 chr1D 90.723 636 36 7 1 615 480998446 480997813 0.000000e+00 826.0
26 TraesCS5D01G343400 chr7D 96.393 804 27 2 4038 4840 565207428 565208230 0.000000e+00 1323.0
27 TraesCS5D01G343400 chr7D 82.946 1032 137 18 2616 3617 22544853 22545875 0.000000e+00 894.0
28 TraesCS5D01G343400 chr2D 96.255 801 30 0 4040 4840 562895601 562894801 0.000000e+00 1314.0
29 TraesCS5D01G343400 chr2D 95.787 807 33 1 4035 4840 318350561 318349755 0.000000e+00 1301.0
30 TraesCS5D01G343400 chr2D 95.545 808 32 2 4034 4840 586773881 586774685 0.000000e+00 1290.0
31 TraesCS5D01G343400 chr2A 96.040 808 28 4 4036 4840 166851429 166852235 0.000000e+00 1312.0
32 TraesCS5D01G343400 chr2A 95.647 804 33 2 4038 4840 651133264 651134066 0.000000e+00 1290.0
33 TraesCS5D01G343400 chr4A 80.941 1742 246 47 2060 3730 705431845 705430119 0.000000e+00 1299.0
34 TraesCS5D01G343400 chr4A 79.342 1186 179 35 2616 3748 705436741 705437913 0.000000e+00 773.0
35 TraesCS5D01G343400 chr4A 85.075 536 74 3 2056 2586 705436144 705436678 4.400000e-150 542.0
36 TraesCS5D01G343400 chr4A 84.888 536 74 4 2056 2586 705259472 705260005 7.360000e-148 534.0
37 TraesCS5D01G343400 chr6D 90.746 724 39 9 1 701 90122056 90122774 0.000000e+00 941.0
38 TraesCS5D01G343400 chr6A 90.234 727 40 11 1 701 108937875 108937154 0.000000e+00 920.0
39 TraesCS5D01G343400 chr6B 89.365 724 46 11 1 701 172728636 172727921 0.000000e+00 881.0
40 TraesCS5D01G343400 chr3D 89.912 684 43 6 1 658 523637662 523638345 0.000000e+00 857.0
41 TraesCS5D01G343400 chr3D 88.840 457 41 6 207 657 580092890 580092438 2.030000e-153 553.0
42 TraesCS5D01G343400 chrUn 89.466 674 48 8 1 652 86405593 86406265 0.000000e+00 830.0
43 TraesCS5D01G343400 chr7A 89.009 646 65 5 1 640 258374463 258375108 0.000000e+00 795.0
44 TraesCS5D01G343400 chr7A 86.834 319 37 3 339 657 221207255 221207568 7.960000e-93 351.0
45 TraesCS5D01G343400 chr7A 97.633 169 4 0 4830 4998 325707373 325707541 1.760000e-74 291.0
46 TraesCS5D01G343400 chr7A 97.633 169 4 0 4830 4998 690856564 690856396 1.760000e-74 291.0
47 TraesCS5D01G343400 chr3A 98.817 169 2 0 4830 4998 717663197 717663365 8.130000e-78 302.0
48 TraesCS5D01G343400 chr1A 98.817 169 2 0 4830 4998 454531961 454531793 8.130000e-78 302.0
49 TraesCS5D01G343400 chr1A 98.225 169 3 0 4830 4998 491271174 491271342 3.780000e-76 296.0
50 TraesCS5D01G343400 chr1A 88.152 211 20 4 493 701 292822929 292822722 3.860000e-61 246.0
51 TraesCS5D01G343400 chr1A 88.152 211 20 4 493 701 292872506 292872299 3.860000e-61 246.0
52 TraesCS5D01G343400 chr4D 97.633 169 4 0 4830 4998 381096580 381096748 1.760000e-74 291.0
53 TraesCS5D01G343400 chr7B 100.000 28 0 0 1149 1176 177486996 177487023 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G343400 chr5D 431561021 431566018 4997 True 9230.000000 9230 100.000000 1 4998 1 chr5D.!!$R2 4997
1 TraesCS5D01G343400 chr5D 430580758 430582711 1953 False 847.500000 1094 83.266000 1948 3873 2 chr5D.!!$F5 1925
2 TraesCS5D01G343400 chr5D 312054681 312055399 718 False 841.000000 841 88.260000 1 701 1 chr5D.!!$F3 700
3 TraesCS5D01G343400 chr5D 407009345 407009981 636 True 835.000000 835 90.895000 1 615 1 chr5D.!!$R1 614
4 TraesCS5D01G343400 chr5D 489097055 489097604 549 False 721.000000 721 90.416000 3373 3921 1 chr5D.!!$F4 548
5 TraesCS5D01G343400 chr5D 232587249 232587754 505 False 593.000000 593 88.477000 211 701 1 chr5D.!!$F2 490
6 TraesCS5D01G343400 chr5D 431536952 431537556 604 True 416.000000 726 93.059500 1953 3921 2 chr5D.!!$R3 1968
7 TraesCS5D01G343400 chr5B 521138158 521141349 3191 True 4096.000000 4096 89.938000 714 3919 1 chr5B.!!$R1 3205
8 TraesCS5D01G343400 chr5B 520110606 520115195 4589 False 704.666667 998 82.366667 1948 3845 3 chr5B.!!$F1 1897
9 TraesCS5D01G343400 chr5A 580927794 580928596 802 False 1295.000000 1295 95.771000 4038 4840 1 chr5A.!!$F3 802
10 TraesCS5D01G343400 chr5A 546684490 546687350 2860 True 1216.666667 2808 86.688000 718 3982 3 chr5A.!!$R2 3264
11 TraesCS5D01G343400 chr5A 308458060 308458736 676 False 867.000000 867 90.265000 1 658 1 chr5A.!!$F1 657
12 TraesCS5D01G343400 chr5A 546205550 546207503 1953 False 848.000000 1127 83.001000 1948 3873 2 chr5A.!!$F4 1925
13 TraesCS5D01G343400 chr1D 469095663 469096467 804 False 1338.000000 1338 96.646000 4036 4840 1 chr1D.!!$F2 804
14 TraesCS5D01G343400 chr1D 433907707 433908512 805 False 1310.000000 1310 96.030000 4036 4840 1 chr1D.!!$F1 804
15 TraesCS5D01G343400 chr1D 480997813 480998446 633 True 826.000000 826 90.723000 1 615 1 chr1D.!!$R1 614
16 TraesCS5D01G343400 chr7D 565207428 565208230 802 False 1323.000000 1323 96.393000 4038 4840 1 chr7D.!!$F2 802
17 TraesCS5D01G343400 chr7D 22544853 22545875 1022 False 894.000000 894 82.946000 2616 3617 1 chr7D.!!$F1 1001
18 TraesCS5D01G343400 chr2D 562894801 562895601 800 True 1314.000000 1314 96.255000 4040 4840 1 chr2D.!!$R2 800
19 TraesCS5D01G343400 chr2D 318349755 318350561 806 True 1301.000000 1301 95.787000 4035 4840 1 chr2D.!!$R1 805
20 TraesCS5D01G343400 chr2D 586773881 586774685 804 False 1290.000000 1290 95.545000 4034 4840 1 chr2D.!!$F1 806
21 TraesCS5D01G343400 chr2A 166851429 166852235 806 False 1312.000000 1312 96.040000 4036 4840 1 chr2A.!!$F1 804
22 TraesCS5D01G343400 chr2A 651133264 651134066 802 False 1290.000000 1290 95.647000 4038 4840 1 chr2A.!!$F2 802
23 TraesCS5D01G343400 chr4A 705430119 705431845 1726 True 1299.000000 1299 80.941000 2060 3730 1 chr4A.!!$R1 1670
24 TraesCS5D01G343400 chr4A 705436144 705437913 1769 False 657.500000 773 82.208500 2056 3748 2 chr4A.!!$F2 1692
25 TraesCS5D01G343400 chr4A 705259472 705260005 533 False 534.000000 534 84.888000 2056 2586 1 chr4A.!!$F1 530
26 TraesCS5D01G343400 chr6D 90122056 90122774 718 False 941.000000 941 90.746000 1 701 1 chr6D.!!$F1 700
27 TraesCS5D01G343400 chr6A 108937154 108937875 721 True 920.000000 920 90.234000 1 701 1 chr6A.!!$R1 700
28 TraesCS5D01G343400 chr6B 172727921 172728636 715 True 881.000000 881 89.365000 1 701 1 chr6B.!!$R1 700
29 TraesCS5D01G343400 chr3D 523637662 523638345 683 False 857.000000 857 89.912000 1 658 1 chr3D.!!$F1 657
30 TraesCS5D01G343400 chrUn 86405593 86406265 672 False 830.000000 830 89.466000 1 652 1 chrUn.!!$F1 651
31 TraesCS5D01G343400 chr7A 258374463 258375108 645 False 795.000000 795 89.009000 1 640 1 chr7A.!!$F2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1070 0.030369 CGCTATATATCCGGGTCGCC 59.970 60.0 0.00 0.00 0.00 5.54 F
1689 1797 0.102844 GCAGGCAAAGTTCAAGCACA 59.897 50.0 0.00 0.00 0.00 4.57 F
1888 1999 0.810648 CCCAATTCATGTGTCACCGG 59.189 55.0 0.00 0.00 0.00 5.28 F
2481 2599 0.924363 CCGTCAGAGCGATAACGACG 60.924 60.0 10.86 10.86 42.66 5.12 F
3548 3804 1.034356 GGCACTGCATTGCATATGGA 58.966 50.0 27.58 0.00 44.94 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1977 0.171007 CGGTGACACATGAATTGGGC 59.829 55.000 8.08 0.00 28.72 5.36 R
3548 3804 0.844660 AGCATGCTGATCAGGGACAT 59.155 50.000 21.98 15.34 0.00 3.06 R
3736 3995 0.250295 CACCTTGGCGTCCTCTGAAA 60.250 55.000 0.00 0.00 0.00 2.69 R
3793 4052 1.285950 GAAGACAAAAGCGCCCACC 59.714 57.895 2.29 0.00 0.00 4.61 R
4858 6350 0.316442 CACAATATGCCGCGCTCAAG 60.316 55.000 5.56 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 212 6.198237 ACTACCTAGGTGACGGTATCTATT 57.802 41.667 25.33 0.00 35.38 1.73
353 356 2.439880 TGATGGGGCATCGTTTGGTATA 59.560 45.455 0.00 0.00 43.14 1.47
447 454 0.036388 GAAGATGAGCACCCGGAACA 60.036 55.000 0.73 0.00 0.00 3.18
458 467 3.554337 GCACCCGGAACATATCTACGATT 60.554 47.826 0.73 0.00 0.00 3.34
486 495 3.423539 TCAGTTTCAGGGTGAGAATGG 57.576 47.619 0.00 0.00 29.22 3.16
510 557 0.306533 CCGTTTGAACAGTTCACCCG 59.693 55.000 15.93 18.35 39.87 5.28
553 601 5.997129 TGATTGAGAAACTCACATGCAACTA 59.003 36.000 0.00 0.00 40.46 2.24
583 631 1.985473 TGATTGAGCATATGTGGGCC 58.015 50.000 4.29 0.00 0.00 5.80
702 754 8.611654 TTATATTCGGGCTTGTAAAACTATCC 57.388 34.615 0.00 0.00 0.00 2.59
703 755 3.271055 TCGGGCTTGTAAAACTATCCC 57.729 47.619 0.00 0.00 0.00 3.85
705 757 2.995283 GGGCTTGTAAAACTATCCCGT 58.005 47.619 0.00 0.00 0.00 5.28
706 758 3.349927 GGGCTTGTAAAACTATCCCGTT 58.650 45.455 0.00 0.00 0.00 4.44
707 759 3.128068 GGGCTTGTAAAACTATCCCGTTG 59.872 47.826 0.00 0.00 0.00 4.10
708 760 3.128068 GGCTTGTAAAACTATCCCGTTGG 59.872 47.826 0.00 0.00 0.00 3.77
710 762 4.094442 GCTTGTAAAACTATCCCGTTGGAG 59.906 45.833 0.00 0.00 46.08 3.86
711 763 4.895668 TGTAAAACTATCCCGTTGGAGT 57.104 40.909 0.00 0.00 46.08 3.85
712 764 5.231702 TGTAAAACTATCCCGTTGGAGTT 57.768 39.130 0.00 0.00 46.08 3.01
713 765 4.998672 TGTAAAACTATCCCGTTGGAGTTG 59.001 41.667 0.00 0.00 46.08 3.16
714 766 2.109425 AACTATCCCGTTGGAGTTGC 57.891 50.000 0.00 0.00 46.08 4.17
715 767 1.276622 ACTATCCCGTTGGAGTTGCT 58.723 50.000 0.00 0.00 46.08 3.91
716 768 1.207329 ACTATCCCGTTGGAGTTGCTC 59.793 52.381 0.00 0.00 46.08 4.26
732 784 6.128145 GGAGTTGCTCTTAAGGAATTGTCTTC 60.128 42.308 1.85 0.00 35.12 2.87
742 794 0.602638 AATTGTCTTCACGCGCAGGA 60.603 50.000 5.73 0.00 0.00 3.86
758 810 1.376037 GGAAGGACCTGCCAGTTCG 60.376 63.158 14.54 0.00 40.02 3.95
759 811 1.371558 GAAGGACCTGCCAGTTCGT 59.628 57.895 0.00 0.00 40.02 3.85
761 813 1.696097 AAGGACCTGCCAGTTCGTGT 61.696 55.000 0.00 0.00 40.02 4.49
762 814 1.961277 GGACCTGCCAGTTCGTGTG 60.961 63.158 0.00 0.00 36.34 3.82
763 815 2.591715 ACCTGCCAGTTCGTGTGC 60.592 61.111 0.00 0.00 0.00 4.57
764 816 2.591429 CCTGCCAGTTCGTGTGCA 60.591 61.111 0.00 0.00 33.10 4.57
765 817 2.633657 CTGCCAGTTCGTGTGCAC 59.366 61.111 10.75 10.75 31.46 4.57
766 818 2.124942 TGCCAGTTCGTGTGCACA 60.125 55.556 17.42 17.42 30.20 4.57
795 847 2.203153 AGCCGCCGTCACAAACTT 60.203 55.556 0.00 0.00 0.00 2.66
810 863 1.518903 AACTTGCGCTTGGCTTCCTC 61.519 55.000 9.73 0.00 44.05 3.71
820 873 2.476320 GGCTTCCTCGAATGCTGCC 61.476 63.158 0.00 0.00 0.00 4.85
983 1070 0.030369 CGCTATATATCCGGGTCGCC 59.970 60.000 0.00 0.00 0.00 5.54
1004 1093 1.010797 GCACGCCATACATTCGCTG 60.011 57.895 0.00 0.00 0.00 5.18
1071 1169 1.002990 CAGCACACCATCCAGCTCA 60.003 57.895 0.00 0.00 34.61 4.26
1241 1339 1.740025 GCTGCTGGTAATGTTCACCTC 59.260 52.381 0.00 0.00 36.96 3.85
1242 1340 2.616510 GCTGCTGGTAATGTTCACCTCT 60.617 50.000 0.00 0.00 36.96 3.69
1257 1355 0.756442 CCTCTCTGCTGGCTCTAGCT 60.756 60.000 6.78 0.00 44.01 3.32
1262 1360 0.461693 CTGCTGGCTCTAGCTGTTCC 60.462 60.000 0.00 0.00 44.01 3.62
1267 1365 2.961741 CTGGCTCTAGCTGTTCCATCTA 59.038 50.000 0.00 0.00 41.70 1.98
1285 1383 2.360801 TCTATGATCATCCGTGCGTTCA 59.639 45.455 12.53 0.00 0.00 3.18
1289 1387 2.159170 TGATCATCCGTGCGTTCACATA 60.159 45.455 0.00 0.00 43.28 2.29
1303 1401 9.769093 GTGCGTTCACATAATTAGAGTATTTTT 57.231 29.630 0.00 0.00 42.66 1.94
1342 1440 3.493767 AAGTCAAACCTCAGGTTCTCC 57.506 47.619 10.34 0.10 46.20 3.71
1372 1470 9.358872 CAGGGCTTTTGAAGTTATTTTAATCTC 57.641 33.333 0.00 0.00 0.00 2.75
1373 1471 9.088987 AGGGCTTTTGAAGTTATTTTAATCTCA 57.911 29.630 0.00 0.00 0.00 3.27
1374 1472 9.875691 GGGCTTTTGAAGTTATTTTAATCTCAT 57.124 29.630 0.00 0.00 0.00 2.90
1392 1490 6.037786 TCTCATACCCACTCAAACTTACAG 57.962 41.667 0.00 0.00 0.00 2.74
1399 1497 6.597562 ACCCACTCAAACTTACAGTTATTCA 58.402 36.000 0.00 0.00 37.47 2.57
1440 1538 9.640974 GAAATTTGGATTCATTTTATTCATGCG 57.359 29.630 0.00 0.00 0.00 4.73
1469 1575 2.496899 TGGAGAGAAAGGGTGCATTC 57.503 50.000 0.00 0.00 0.00 2.67
1480 1586 5.722021 AAGGGTGCATTCTTTCGTTTTAT 57.278 34.783 0.00 0.00 0.00 1.40
1481 1587 6.827586 AAGGGTGCATTCTTTCGTTTTATA 57.172 33.333 0.00 0.00 0.00 0.98
1482 1588 6.436843 AGGGTGCATTCTTTCGTTTTATAG 57.563 37.500 0.00 0.00 0.00 1.31
1483 1589 6.177610 AGGGTGCATTCTTTCGTTTTATAGA 58.822 36.000 0.00 0.00 0.00 1.98
1484 1590 6.657541 AGGGTGCATTCTTTCGTTTTATAGAA 59.342 34.615 0.00 0.00 0.00 2.10
1485 1591 6.745907 GGGTGCATTCTTTCGTTTTATAGAAC 59.254 38.462 0.00 0.00 30.17 3.01
1488 1594 9.176181 GTGCATTCTTTCGTTTTATAGAACAAA 57.824 29.630 6.91 5.64 30.17 2.83
1515 1621 1.135721 GGGCATTTCATCAGGTTGCTC 59.864 52.381 0.00 0.00 33.86 4.26
1516 1622 1.202222 GGCATTTCATCAGGTTGCTCG 60.202 52.381 0.00 0.00 33.86 5.03
1517 1623 1.470098 GCATTTCATCAGGTTGCTCGT 59.530 47.619 0.00 0.00 0.00 4.18
1518 1624 2.677836 GCATTTCATCAGGTTGCTCGTA 59.322 45.455 0.00 0.00 0.00 3.43
1519 1625 3.126858 GCATTTCATCAGGTTGCTCGTAA 59.873 43.478 0.00 0.00 0.00 3.18
1520 1626 4.201950 GCATTTCATCAGGTTGCTCGTAAT 60.202 41.667 0.00 0.00 0.00 1.89
1521 1627 4.944962 TTTCATCAGGTTGCTCGTAATG 57.055 40.909 0.00 0.00 0.00 1.90
1522 1628 3.610040 TCATCAGGTTGCTCGTAATGT 57.390 42.857 0.00 0.00 0.00 2.71
1523 1629 3.937814 TCATCAGGTTGCTCGTAATGTT 58.062 40.909 0.00 0.00 0.00 2.71
1524 1630 3.932710 TCATCAGGTTGCTCGTAATGTTC 59.067 43.478 0.00 0.00 0.00 3.18
1525 1631 3.394674 TCAGGTTGCTCGTAATGTTCA 57.605 42.857 0.00 0.00 0.00 3.18
1526 1632 3.064207 TCAGGTTGCTCGTAATGTTCAC 58.936 45.455 0.00 0.00 0.00 3.18
1527 1633 2.159627 CAGGTTGCTCGTAATGTTCACC 59.840 50.000 0.00 0.00 0.00 4.02
1528 1634 2.038557 AGGTTGCTCGTAATGTTCACCT 59.961 45.455 0.00 0.00 0.00 4.00
1529 1635 3.259876 AGGTTGCTCGTAATGTTCACCTA 59.740 43.478 0.00 0.00 0.00 3.08
1536 1642 5.062308 GCTCGTAATGTTCACCTAACTTCTG 59.938 44.000 0.00 0.00 38.99 3.02
1553 1659 3.474570 GGCTGCTGGATCTCCGGT 61.475 66.667 0.00 0.00 44.34 5.28
1570 1676 1.343506 GGTCATCCGTACGTTCACAC 58.656 55.000 15.21 3.97 0.00 3.82
1572 1678 2.602878 GTCATCCGTACGTTCACACAT 58.397 47.619 15.21 0.00 0.00 3.21
1582 1688 3.141398 ACGTTCACACATTTGAGAGCAT 58.859 40.909 0.00 0.00 0.00 3.79
1583 1689 3.565482 ACGTTCACACATTTGAGAGCATT 59.435 39.130 0.00 0.00 0.00 3.56
1609 1715 4.747540 TTTTCTGTTCACACCGATCATG 57.252 40.909 0.00 0.00 0.00 3.07
1641 1747 2.184020 TTGAGTCACTGCCATCGGGG 62.184 60.000 0.00 0.00 40.85 5.73
1679 1785 1.662044 GGGTCAACTGCAGGCAAAG 59.338 57.895 19.93 2.74 0.00 2.77
1689 1797 0.102844 GCAGGCAAAGTTCAAGCACA 59.897 50.000 0.00 0.00 0.00 4.57
1729 1837 5.776173 TTTGATTATTTGAACACCACCGT 57.224 34.783 0.00 0.00 0.00 4.83
1733 1841 7.455641 TGATTATTTGAACACCACCGTAAAT 57.544 32.000 0.00 0.00 0.00 1.40
1740 1848 4.210955 TGAACACCACCGTAAATCGTAAAC 59.789 41.667 0.00 0.00 37.94 2.01
1756 1864 4.698304 TCGTAAACTTTATGGAAGCTTGGG 59.302 41.667 2.10 0.00 39.04 4.12
1832 1941 3.619038 CGAATTCCTACCAGAGTTTGAGC 59.381 47.826 0.00 0.00 0.00 4.26
1840 1949 4.326504 ACCAGAGTTTGAGCAAATTTGG 57.673 40.909 19.47 15.53 35.70 3.28
1853 1962 4.037021 GCAAATTTGGCAAAAGTTCAAGC 58.963 39.130 17.70 10.00 31.52 4.01
1854 1963 4.438472 GCAAATTTGGCAAAAGTTCAAGCA 60.438 37.500 17.70 0.00 31.52 3.91
1855 1964 5.638783 CAAATTTGGCAAAAGTTCAAGCAA 58.361 33.333 17.70 0.00 31.52 3.91
1862 1971 4.919754 GGCAAAAGTTCAAGCAATGTCTAG 59.080 41.667 0.00 0.00 0.00 2.43
1868 1977 4.520492 AGTTCAAGCAATGTCTAGGTTTGG 59.480 41.667 0.00 0.00 0.00 3.28
1870 1981 1.839424 AGCAATGTCTAGGTTTGGCC 58.161 50.000 0.00 0.00 37.58 5.36
1871 1982 0.817654 GCAATGTCTAGGTTTGGCCC 59.182 55.000 0.00 0.00 38.26 5.80
1888 1999 0.810648 CCCAATTCATGTGTCACCGG 59.189 55.000 0.00 0.00 0.00 5.28
1918 2029 5.049818 TGCAAACAAAAGGAAAAAGTGTGTG 60.050 36.000 0.00 0.00 31.77 3.82
1932 2043 9.820229 GAAAAAGTGTGTGATCGATACATTTTA 57.180 29.630 16.10 2.60 35.45 1.52
1946 2057 4.468095 ACATTTTAGCCGATATGCGAAC 57.532 40.909 0.00 0.00 44.57 3.95
1979 2090 6.535150 TGCCTAGTGATTTAACTGAGATTTCG 59.465 38.462 0.00 0.00 0.00 3.46
1980 2091 6.757010 GCCTAGTGATTTAACTGAGATTTCGA 59.243 38.462 0.00 0.00 0.00 3.71
2017 2131 4.720649 TTCATTCAAAACGGGAACACAA 57.279 36.364 0.00 0.00 0.00 3.33
2039 2156 8.817100 CACAAATGTTTTTCTTAGGAAGGAAAC 58.183 33.333 7.56 7.56 35.75 2.78
2481 2599 0.924363 CCGTCAGAGCGATAACGACG 60.924 60.000 10.86 10.86 42.66 5.12
2483 2601 1.528400 CGTCAGAGCGATAACGACGAA 60.528 52.381 12.06 0.00 42.66 3.85
2484 2602 1.838943 GTCAGAGCGATAACGACGAAC 59.161 52.381 0.00 0.00 42.66 3.95
2587 2713 2.770048 AGCTCCCCCTTGATCCCG 60.770 66.667 0.00 0.00 0.00 5.14
2647 2850 4.261801 TGTTAGAAATGGTTAGCCTGCTC 58.738 43.478 0.00 0.00 35.27 4.26
3355 3571 4.966787 GCCAACAACCTGCCCGGA 62.967 66.667 0.73 0.00 36.31 5.14
3548 3804 1.034356 GGCACTGCATTGCATATGGA 58.966 50.000 27.58 0.00 44.94 3.41
3586 3842 3.630148 CTGGCATTCTACGCGGCG 61.630 66.667 22.36 22.36 0.00 6.46
3605 3861 3.758088 ATAGCAGCCGTGACGAGCG 62.758 63.158 6.54 6.28 0.00 5.03
3736 3995 2.115052 TTCCTGTGGCAATGCGGT 59.885 55.556 0.00 0.00 0.00 5.68
3793 4052 4.212004 CGTATCAGCCAACAATATCCAGTG 59.788 45.833 0.00 0.00 0.00 3.66
3821 4080 3.734902 CGCTTTTGTCTTCAACCTGCTTT 60.735 43.478 0.00 0.00 32.93 3.51
3829 4088 6.061441 TGTCTTCAACCTGCTTTTATTCAGA 58.939 36.000 0.00 0.00 32.26 3.27
3853 4112 5.050091 AGCTGCGCATTATGTTATACTGTTC 60.050 40.000 12.24 0.00 0.00 3.18
3925 4184 5.614324 AGAGCATGGTTAATAGTACAGCA 57.386 39.130 0.00 0.00 0.00 4.41
3931 4190 6.128007 GCATGGTTAATAGTACAGCAAGTTGT 60.128 38.462 4.48 0.00 35.09 3.32
3933 4192 7.197071 TGGTTAATAGTACAGCAAGTTGTTG 57.803 36.000 17.14 17.14 34.60 3.33
3939 4198 5.160607 AGTACAGCAAGTTGTTGGCTATA 57.839 39.130 21.75 4.49 32.57 1.31
3948 4207 7.339212 AGCAAGTTGTTGGCTATATGTTATTGA 59.661 33.333 4.48 0.00 33.87 2.57
3996 4255 6.384258 AGTCAGCATGTATAGTGTAGTCAG 57.616 41.667 0.00 0.00 37.40 3.51
3997 4256 5.888724 AGTCAGCATGTATAGTGTAGTCAGT 59.111 40.000 0.00 0.00 37.40 3.41
3998 4257 6.378564 AGTCAGCATGTATAGTGTAGTCAGTT 59.621 38.462 0.00 0.00 37.40 3.16
4000 4259 6.152831 TCAGCATGTATAGTGTAGTCAGTTGT 59.847 38.462 0.00 0.00 37.40 3.32
4001 4260 7.338449 TCAGCATGTATAGTGTAGTCAGTTGTA 59.662 37.037 0.00 0.00 37.40 2.41
4003 4262 8.528643 AGCATGTATAGTGTAGTCAGTTGTAAA 58.471 33.333 0.00 0.00 0.00 2.01
4004 4263 9.314321 GCATGTATAGTGTAGTCAGTTGTAAAT 57.686 33.333 0.00 0.00 0.00 1.40
4486 5136 1.338105 CCTGCATCTTCTCGAACCACA 60.338 52.381 0.00 0.00 0.00 4.17
4487 5137 2.625737 CTGCATCTTCTCGAACCACAT 58.374 47.619 0.00 0.00 0.00 3.21
4674 5324 1.021390 CGGCGTCAAGATCAAGCCTT 61.021 55.000 0.00 0.00 45.16 4.35
4721 6057 1.000385 CATTTGCTCCGCCTTGAAACA 60.000 47.619 0.00 0.00 0.00 2.83
4873 6365 2.974698 GCCTTGAGCGCGGCATAT 60.975 61.111 17.75 0.00 45.59 1.78
4874 6366 2.546494 GCCTTGAGCGCGGCATATT 61.546 57.895 17.75 0.00 45.59 1.28
4875 6367 1.280746 CCTTGAGCGCGGCATATTG 59.719 57.895 8.83 0.00 0.00 1.90
4876 6368 1.439353 CCTTGAGCGCGGCATATTGT 61.439 55.000 8.83 0.00 0.00 2.71
4877 6369 0.316442 CTTGAGCGCGGCATATTGTG 60.316 55.000 8.83 0.00 0.00 3.33
4895 6387 2.158957 TGTGCCTTGAACTTCTCTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
4896 6388 2.476997 GTGCCTTGAACTTCTCTTCGTC 59.523 50.000 0.00 0.00 0.00 4.20
4897 6389 2.070028 GCCTTGAACTTCTCTTCGTCC 58.930 52.381 0.00 0.00 0.00 4.79
4898 6390 2.289133 GCCTTGAACTTCTCTTCGTCCT 60.289 50.000 0.00 0.00 0.00 3.85
4899 6391 3.804063 GCCTTGAACTTCTCTTCGTCCTT 60.804 47.826 0.00 0.00 0.00 3.36
4900 6392 3.743396 CCTTGAACTTCTCTTCGTCCTTG 59.257 47.826 0.00 0.00 0.00 3.61
4901 6393 4.501571 CCTTGAACTTCTCTTCGTCCTTGA 60.502 45.833 0.00 0.00 0.00 3.02
4902 6394 4.873746 TGAACTTCTCTTCGTCCTTGAT 57.126 40.909 0.00 0.00 0.00 2.57
4904 6396 4.280929 TGAACTTCTCTTCGTCCTTGATGA 59.719 41.667 0.00 0.00 0.00 2.92
4905 6397 4.181309 ACTTCTCTTCGTCCTTGATGAC 57.819 45.455 0.00 0.00 0.00 3.06
4906 6398 3.574396 ACTTCTCTTCGTCCTTGATGACA 59.426 43.478 0.00 0.00 34.88 3.58
4907 6399 3.577649 TCTCTTCGTCCTTGATGACAC 57.422 47.619 0.00 0.00 34.88 3.67
4908 6400 2.095212 TCTCTTCGTCCTTGATGACACG 60.095 50.000 0.00 0.00 34.88 4.49
4909 6401 1.883926 TCTTCGTCCTTGATGACACGA 59.116 47.619 0.00 0.00 34.88 4.35
4910 6402 2.492088 TCTTCGTCCTTGATGACACGAT 59.508 45.455 0.00 0.00 34.88 3.73
4911 6403 3.692593 TCTTCGTCCTTGATGACACGATA 59.307 43.478 0.00 0.00 34.88 2.92
4912 6404 3.692791 TCGTCCTTGATGACACGATAG 57.307 47.619 0.00 0.00 46.19 2.08
4913 6405 2.120232 CGTCCTTGATGACACGATAGC 58.880 52.381 0.00 0.00 42.67 2.97
4914 6406 2.479560 CGTCCTTGATGACACGATAGCA 60.480 50.000 0.00 0.00 42.67 3.49
4915 6407 3.521560 GTCCTTGATGACACGATAGCAA 58.478 45.455 0.00 0.00 42.67 3.91
4916 6408 4.122776 GTCCTTGATGACACGATAGCAAT 58.877 43.478 0.00 0.00 42.67 3.56
4917 6409 4.025396 GTCCTTGATGACACGATAGCAATG 60.025 45.833 0.00 0.00 42.67 2.82
4921 6413 2.602257 TGACACGATAGCAATGGGAG 57.398 50.000 0.00 0.00 42.67 4.30
4922 6414 2.107366 TGACACGATAGCAATGGGAGA 58.893 47.619 0.00 0.00 42.67 3.71
4923 6415 2.101415 TGACACGATAGCAATGGGAGAG 59.899 50.000 0.00 0.00 42.67 3.20
4924 6416 1.414181 ACACGATAGCAATGGGAGAGG 59.586 52.381 0.00 0.00 42.67 3.69
4925 6417 1.414181 CACGATAGCAATGGGAGAGGT 59.586 52.381 0.00 0.00 42.67 3.85
4926 6418 2.119495 ACGATAGCAATGGGAGAGGTT 58.881 47.619 0.00 0.00 42.67 3.50
4927 6419 2.158900 ACGATAGCAATGGGAGAGGTTG 60.159 50.000 0.00 0.00 42.67 3.77
4928 6420 2.103094 CGATAGCAATGGGAGAGGTTGA 59.897 50.000 0.00 0.00 0.00 3.18
4929 6421 3.432186 CGATAGCAATGGGAGAGGTTGAA 60.432 47.826 0.00 0.00 0.00 2.69
4930 6422 2.503895 AGCAATGGGAGAGGTTGAAG 57.496 50.000 0.00 0.00 0.00 3.02
4931 6423 0.813821 GCAATGGGAGAGGTTGAAGC 59.186 55.000 0.00 0.00 0.00 3.86
4932 6424 1.887956 GCAATGGGAGAGGTTGAAGCA 60.888 52.381 0.00 0.00 0.00 3.91
4934 6426 1.366319 ATGGGAGAGGTTGAAGCACT 58.634 50.000 0.00 0.00 0.00 4.40
4936 6428 1.202806 TGGGAGAGGTTGAAGCACTTG 60.203 52.381 0.00 0.00 0.00 3.16
4937 6429 0.877743 GGAGAGGTTGAAGCACTTGC 59.122 55.000 0.00 0.00 42.49 4.01
4938 6430 0.877743 GAGAGGTTGAAGCACTTGCC 59.122 55.000 0.00 0.00 43.38 4.52
4939 6431 0.183492 AGAGGTTGAAGCACTTGCCA 59.817 50.000 0.00 0.00 43.38 4.92
4940 6432 1.202976 AGAGGTTGAAGCACTTGCCAT 60.203 47.619 0.00 0.00 43.38 4.40
4941 6433 1.615392 GAGGTTGAAGCACTTGCCATT 59.385 47.619 0.00 0.00 43.38 3.16
4943 6435 1.069049 GGTTGAAGCACTTGCCATTGT 59.931 47.619 0.00 0.00 43.38 2.71
4944 6436 2.129607 GTTGAAGCACTTGCCATTGTG 58.870 47.619 0.00 0.00 43.38 3.33
4945 6437 1.401761 TGAAGCACTTGCCATTGTGT 58.598 45.000 0.00 0.00 43.38 3.72
4946 6438 1.755959 TGAAGCACTTGCCATTGTGTT 59.244 42.857 0.00 0.00 43.38 3.32
4947 6439 2.129607 GAAGCACTTGCCATTGTGTTG 58.870 47.619 0.00 0.00 43.38 3.33
4948 6440 1.401761 AGCACTTGCCATTGTGTTGA 58.598 45.000 0.00 0.00 43.38 3.18
4949 6441 1.755959 AGCACTTGCCATTGTGTTGAA 59.244 42.857 0.00 0.00 43.38 2.69
4950 6442 1.860326 GCACTTGCCATTGTGTTGAAC 59.140 47.619 0.00 0.00 36.63 3.18
4951 6443 2.472816 CACTTGCCATTGTGTTGAACC 58.527 47.619 0.00 0.00 0.00 3.62
4952 6444 2.101249 CACTTGCCATTGTGTTGAACCT 59.899 45.455 0.00 0.00 0.00 3.50
4953 6445 2.765699 ACTTGCCATTGTGTTGAACCTT 59.234 40.909 0.00 0.00 0.00 3.50
4954 6446 2.886862 TGCCATTGTGTTGAACCTTG 57.113 45.000 0.00 0.00 0.00 3.61
4955 6447 2.382882 TGCCATTGTGTTGAACCTTGA 58.617 42.857 0.00 0.00 0.00 3.02
4956 6448 2.762887 TGCCATTGTGTTGAACCTTGAA 59.237 40.909 0.00 0.00 0.00 2.69
4957 6449 3.387374 TGCCATTGTGTTGAACCTTGAAT 59.613 39.130 0.00 0.00 0.00 2.57
4959 6451 3.742369 CCATTGTGTTGAACCTTGAATGC 59.258 43.478 0.00 0.00 0.00 3.56
4960 6452 3.451141 TTGTGTTGAACCTTGAATGCC 57.549 42.857 0.00 0.00 0.00 4.40
4961 6453 2.665165 TGTGTTGAACCTTGAATGCCT 58.335 42.857 0.00 0.00 0.00 4.75
4962 6454 2.622942 TGTGTTGAACCTTGAATGCCTC 59.377 45.455 0.00 0.00 0.00 4.70
4963 6455 2.029918 GTGTTGAACCTTGAATGCCTCC 60.030 50.000 0.00 0.00 0.00 4.30
4964 6456 2.238521 GTTGAACCTTGAATGCCTCCA 58.761 47.619 0.00 0.00 0.00 3.86
4966 6458 2.956132 TGAACCTTGAATGCCTCCAAA 58.044 42.857 0.00 0.00 0.00 3.28
4968 6460 1.260544 ACCTTGAATGCCTCCAAAGC 58.739 50.000 0.00 0.00 0.00 3.51
4969 6461 1.203100 ACCTTGAATGCCTCCAAAGCT 60.203 47.619 0.00 0.00 0.00 3.74
4970 6462 1.897802 CCTTGAATGCCTCCAAAGCTT 59.102 47.619 0.00 0.00 0.00 3.74
4971 6463 2.353406 CCTTGAATGCCTCCAAAGCTTG 60.353 50.000 0.00 0.00 0.00 4.01
4972 6464 2.291209 TGAATGCCTCCAAAGCTTGA 57.709 45.000 0.00 0.00 0.00 3.02
4973 6465 2.596346 TGAATGCCTCCAAAGCTTGAA 58.404 42.857 0.00 0.00 0.00 2.69
4974 6466 2.964464 TGAATGCCTCCAAAGCTTGAAA 59.036 40.909 0.00 0.00 0.00 2.69
4975 6467 3.579586 TGAATGCCTCCAAAGCTTGAAAT 59.420 39.130 0.00 0.00 0.00 2.17
4976 6468 3.604875 ATGCCTCCAAAGCTTGAAATG 57.395 42.857 0.00 0.00 0.00 2.32
4977 6469 1.001181 TGCCTCCAAAGCTTGAAATGC 59.999 47.619 0.00 1.39 37.24 3.56
4978 6470 1.673923 GCCTCCAAAGCTTGAAATGCC 60.674 52.381 0.00 0.00 37.80 4.40
4980 6472 3.091545 CCTCCAAAGCTTGAAATGCCTA 58.908 45.455 0.00 0.00 37.80 3.93
4984 6476 4.343526 TCCAAAGCTTGAAATGCCTACAAA 59.656 37.500 0.00 0.00 37.80 2.83
4985 6477 5.055812 CCAAAGCTTGAAATGCCTACAAAA 58.944 37.500 0.00 0.00 37.80 2.44
4986 6478 5.702209 CCAAAGCTTGAAATGCCTACAAAAT 59.298 36.000 0.00 0.00 37.80 1.82
4987 6479 6.347888 CCAAAGCTTGAAATGCCTACAAAATG 60.348 38.462 0.00 0.00 37.80 2.32
4988 6480 5.473066 AGCTTGAAATGCCTACAAAATGT 57.527 34.783 0.00 0.00 37.80 2.71
4989 6481 5.857268 AGCTTGAAATGCCTACAAAATGTT 58.143 33.333 0.00 0.00 37.80 2.71
4990 6482 6.290605 AGCTTGAAATGCCTACAAAATGTTT 58.709 32.000 0.00 0.00 37.80 2.83
4991 6483 6.424812 AGCTTGAAATGCCTACAAAATGTTTC 59.575 34.615 0.00 0.00 37.80 2.78
4993 6485 6.166984 TGAAATGCCTACAAAATGTTTCCA 57.833 33.333 0.00 0.00 0.00 3.53
4994 6486 6.767456 TGAAATGCCTACAAAATGTTTCCAT 58.233 32.000 0.00 0.00 0.00 3.41
4996 6488 3.924144 TGCCTACAAAATGTTTCCATGC 58.076 40.909 0.00 0.00 0.00 4.06
4997 6489 3.323115 TGCCTACAAAATGTTTCCATGCA 59.677 39.130 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 212 3.506398 TCACAATAGTGGTCCACTGAGA 58.494 45.455 31.23 17.76 45.01 3.27
353 356 0.610687 GTGCTCCAAGTCCTAGCAGT 59.389 55.000 0.00 0.00 46.26 4.40
447 454 9.543783 GAAACTGAAACCCTTAATCGTAGATAT 57.456 33.333 0.00 0.00 45.12 1.63
458 467 3.460340 TCACCCTGAAACTGAAACCCTTA 59.540 43.478 0.00 0.00 0.00 2.69
486 495 1.131504 TGAACTGTTCAAACGGCACAC 59.868 47.619 20.14 0.00 38.89 3.82
553 601 9.093970 CACATATGCTCAATCAAATCATTTTGT 57.906 29.630 1.58 0.00 42.37 2.83
566 614 0.557238 TGGGCCCACATATGCTCAAT 59.443 50.000 24.45 0.00 34.39 2.57
583 631 3.448301 ACATCTATTGGTTGCCAACATGG 59.552 43.478 10.18 0.00 46.95 3.66
676 728 9.059260 GGATAGTTTTACAAGCCCGAATATAAA 57.941 33.333 0.00 0.00 0.00 1.40
677 729 7.662669 GGGATAGTTTTACAAGCCCGAATATAA 59.337 37.037 0.00 0.00 0.00 0.98
678 730 7.163441 GGGATAGTTTTACAAGCCCGAATATA 58.837 38.462 0.00 0.00 0.00 0.86
679 731 6.002082 GGGATAGTTTTACAAGCCCGAATAT 58.998 40.000 0.00 0.00 0.00 1.28
680 732 5.370679 GGGATAGTTTTACAAGCCCGAATA 58.629 41.667 0.00 0.00 0.00 1.75
681 733 4.204799 GGGATAGTTTTACAAGCCCGAAT 58.795 43.478 0.00 0.00 0.00 3.34
682 734 3.613030 GGGATAGTTTTACAAGCCCGAA 58.387 45.455 0.00 0.00 0.00 4.30
683 735 3.271055 GGGATAGTTTTACAAGCCCGA 57.729 47.619 0.00 0.00 0.00 5.14
701 753 2.076863 CTTAAGAGCAACTCCAACGGG 58.923 52.381 0.00 0.00 0.00 5.28
702 754 2.076863 CCTTAAGAGCAACTCCAACGG 58.923 52.381 3.36 0.00 0.00 4.44
703 755 3.040147 TCCTTAAGAGCAACTCCAACG 57.960 47.619 3.36 0.00 0.00 4.10
704 756 5.241728 ACAATTCCTTAAGAGCAACTCCAAC 59.758 40.000 3.36 0.00 0.00 3.77
705 757 5.385198 ACAATTCCTTAAGAGCAACTCCAA 58.615 37.500 3.36 0.00 0.00 3.53
706 758 4.985538 ACAATTCCTTAAGAGCAACTCCA 58.014 39.130 3.36 0.00 0.00 3.86
707 759 5.249420 AGACAATTCCTTAAGAGCAACTCC 58.751 41.667 3.36 0.00 0.00 3.85
708 760 6.428159 TGAAGACAATTCCTTAAGAGCAACTC 59.572 38.462 3.36 0.00 0.00 3.01
709 761 6.205658 GTGAAGACAATTCCTTAAGAGCAACT 59.794 38.462 3.36 0.00 0.00 3.16
710 762 6.374578 GTGAAGACAATTCCTTAAGAGCAAC 58.625 40.000 3.36 0.00 0.00 4.17
711 763 5.179368 CGTGAAGACAATTCCTTAAGAGCAA 59.821 40.000 3.36 0.00 0.00 3.91
712 764 4.690748 CGTGAAGACAATTCCTTAAGAGCA 59.309 41.667 3.36 0.00 0.00 4.26
713 765 4.436183 GCGTGAAGACAATTCCTTAAGAGC 60.436 45.833 3.36 0.00 0.00 4.09
714 766 4.201628 CGCGTGAAGACAATTCCTTAAGAG 60.202 45.833 3.36 0.00 0.00 2.85
715 767 3.678072 CGCGTGAAGACAATTCCTTAAGA 59.322 43.478 3.36 0.00 0.00 2.10
716 768 3.725010 GCGCGTGAAGACAATTCCTTAAG 60.725 47.826 8.43 0.00 0.00 1.85
732 784 4.379243 AGGTCCTTCCTGCGCGTG 62.379 66.667 8.43 0.36 46.19 5.34
742 794 1.071471 CACGAACTGGCAGGTCCTT 59.929 57.895 25.98 11.14 35.26 3.36
758 810 1.451207 TGGACTGTGGTGTGCACAC 60.451 57.895 36.56 36.56 45.72 3.82
759 811 2.993853 TGGACTGTGGTGTGCACA 59.006 55.556 17.42 17.42 33.47 4.57
761 813 1.153188 CTGTGGACTGTGGTGTGCA 60.153 57.895 0.00 0.00 35.97 4.57
762 814 2.546494 GCTGTGGACTGTGGTGTGC 61.546 63.158 0.00 0.00 0.00 4.57
763 815 1.893808 GGCTGTGGACTGTGGTGTG 60.894 63.158 0.00 0.00 0.00 3.82
764 816 2.510906 GGCTGTGGACTGTGGTGT 59.489 61.111 0.00 0.00 0.00 4.16
765 817 2.666190 CGGCTGTGGACTGTGGTG 60.666 66.667 0.00 0.00 0.00 4.17
766 818 4.626081 GCGGCTGTGGACTGTGGT 62.626 66.667 0.00 0.00 0.00 4.16
795 847 2.803155 ATTCGAGGAAGCCAAGCGCA 62.803 55.000 11.47 0.00 41.38 6.09
810 863 3.118454 ACGTTCCGGCAGCATTCG 61.118 61.111 0.00 0.00 0.00 3.34
820 873 0.385849 TGTACTGTACGCACGTTCCG 60.386 55.000 12.87 4.02 0.00 4.30
856 914 2.952273 GCAACCTGCGTTCGTTTTT 58.048 47.368 0.00 0.00 31.71 1.94
857 915 4.702020 GCAACCTGCGTTCGTTTT 57.298 50.000 0.00 0.00 31.71 2.43
983 1070 2.881266 CGAATGTATGGCGTGCCCG 61.881 63.158 8.69 0.00 35.87 6.13
997 1086 2.103042 GTCGCCTGAAGCAGCGAAT 61.103 57.895 8.82 0.00 44.04 3.34
1211 1309 2.087462 TACCAGCAGCCCGATCATCG 62.087 60.000 0.00 0.00 40.07 3.84
1241 1339 0.536260 AACAGCTAGAGCCAGCAGAG 59.464 55.000 0.00 0.00 44.35 3.35
1242 1340 0.534412 GAACAGCTAGAGCCAGCAGA 59.466 55.000 0.00 0.00 44.35 4.26
1262 1360 2.951726 ACGCACGGATGATCATAGATG 58.048 47.619 8.54 8.06 0.00 2.90
1267 1365 1.290203 GTGAACGCACGGATGATCAT 58.710 50.000 8.25 8.25 34.94 2.45
1303 1401 1.380524 TTGACCGGCGAACAGAAAAA 58.619 45.000 9.30 0.00 0.00 1.94
1305 1403 0.941542 CTTTGACCGGCGAACAGAAA 59.058 50.000 9.30 0.00 0.00 2.52
1306 1404 0.179067 ACTTTGACCGGCGAACAGAA 60.179 50.000 9.30 4.93 0.00 3.02
1307 1405 0.599204 GACTTTGACCGGCGAACAGA 60.599 55.000 9.30 2.28 0.00 3.41
1311 1409 0.658897 GTTTGACTTTGACCGGCGAA 59.341 50.000 9.30 0.00 0.00 4.70
1318 1416 4.200092 AGAACCTGAGGTTTGACTTTGAC 58.800 43.478 19.33 1.98 46.95 3.18
1342 1440 1.463553 AACTTCAAAAGCCCTGGCCG 61.464 55.000 4.13 0.00 43.17 6.13
1426 1524 8.065407 CCAAATCCAATTCGCATGAATAAAATG 58.935 33.333 0.00 0.00 44.02 2.32
1440 1538 5.019470 ACCCTTTCTCTCCAAATCCAATTC 58.981 41.667 0.00 0.00 0.00 2.17
1488 1594 4.162651 ACCTGATGAAATGCCCTTCTTTT 58.837 39.130 0.00 0.00 0.00 2.27
1498 1604 4.944962 TTACGAGCAACCTGATGAAATG 57.055 40.909 0.00 0.00 0.00 2.32
1508 1614 2.423577 AGGTGAACATTACGAGCAACC 58.576 47.619 0.00 0.00 0.00 3.77
1515 1621 4.092968 GCCAGAAGTTAGGTGAACATTACG 59.907 45.833 0.00 0.00 40.86 3.18
1516 1622 5.122396 CAGCCAGAAGTTAGGTGAACATTAC 59.878 44.000 0.00 0.00 40.86 1.89
1517 1623 5.245531 CAGCCAGAAGTTAGGTGAACATTA 58.754 41.667 0.00 0.00 40.86 1.90
1518 1624 4.074970 CAGCCAGAAGTTAGGTGAACATT 58.925 43.478 0.00 0.00 40.86 2.71
1519 1625 3.679389 CAGCCAGAAGTTAGGTGAACAT 58.321 45.455 0.00 0.00 40.86 2.71
1520 1626 2.810400 GCAGCCAGAAGTTAGGTGAACA 60.810 50.000 4.02 0.00 40.86 3.18
1521 1627 1.807142 GCAGCCAGAAGTTAGGTGAAC 59.193 52.381 4.02 0.00 38.44 3.18
1522 1628 1.699634 AGCAGCCAGAAGTTAGGTGAA 59.300 47.619 0.00 0.00 0.00 3.18
1523 1629 1.002430 CAGCAGCCAGAAGTTAGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
1524 1630 1.446907 CAGCAGCCAGAAGTTAGGTG 58.553 55.000 0.00 0.00 0.00 4.00
1525 1631 0.326264 CCAGCAGCCAGAAGTTAGGT 59.674 55.000 0.00 0.00 0.00 3.08
1526 1632 0.615331 TCCAGCAGCCAGAAGTTAGG 59.385 55.000 0.00 0.00 0.00 2.69
1527 1633 2.170187 AGATCCAGCAGCCAGAAGTTAG 59.830 50.000 0.00 0.00 0.00 2.34
1528 1634 2.169352 GAGATCCAGCAGCCAGAAGTTA 59.831 50.000 0.00 0.00 0.00 2.24
1529 1635 0.990374 AGATCCAGCAGCCAGAAGTT 59.010 50.000 0.00 0.00 0.00 2.66
1536 1642 3.453070 GACCGGAGATCCAGCAGCC 62.453 68.421 9.46 0.00 35.14 4.85
1553 1659 3.306917 AATGTGTGAACGTACGGATGA 57.693 42.857 21.06 0.00 0.00 2.92
1589 1695 3.073678 CCATGATCGGTGTGAACAGAAA 58.926 45.455 0.00 0.00 32.40 2.52
1598 1704 1.073125 TGGTTTGACCATGATCGGTGT 59.927 47.619 0.00 0.00 44.79 4.16
1641 1747 1.376812 CTCCCCGTACCAAACCTGC 60.377 63.158 0.00 0.00 0.00 4.85
1649 1755 3.929723 TTGACCCCCTCCCCGTACC 62.930 68.421 0.00 0.00 0.00 3.34
1679 1785 2.228822 CCTAATGGGTGTGTGCTTGAAC 59.771 50.000 0.00 0.00 0.00 3.18
1729 1837 8.455682 CCAAGCTTCCATAAAGTTTACGATTTA 58.544 33.333 0.00 0.00 36.39 1.40
1733 1841 4.698304 CCCAAGCTTCCATAAAGTTTACGA 59.302 41.667 0.00 0.00 36.39 3.43
1806 1915 6.292923 TCAAACTCTGGTAGGAATTCGAAAA 58.707 36.000 0.00 0.00 0.00 2.29
1807 1916 5.860611 TCAAACTCTGGTAGGAATTCGAAA 58.139 37.500 0.00 0.00 0.00 3.46
1808 1917 5.477607 TCAAACTCTGGTAGGAATTCGAA 57.522 39.130 0.00 0.00 0.00 3.71
1809 1918 4.620803 GCTCAAACTCTGGTAGGAATTCGA 60.621 45.833 0.00 0.00 0.00 3.71
1832 1941 5.232610 TGCTTGAACTTTTGCCAAATTTG 57.767 34.783 11.40 11.40 0.00 2.32
1840 1949 4.919754 CCTAGACATTGCTTGAACTTTTGC 59.080 41.667 0.00 0.00 0.00 3.68
1853 1962 2.214376 TGGGCCAAACCTAGACATTG 57.786 50.000 2.13 0.00 39.10 2.82
1854 1963 2.990740 TTGGGCCAAACCTAGACATT 57.009 45.000 18.51 0.00 39.10 2.71
1855 1964 3.245586 TGAATTGGGCCAAACCTAGACAT 60.246 43.478 24.97 0.00 39.10 3.06
1862 1971 1.347378 ACACATGAATTGGGCCAAACC 59.653 47.619 24.97 17.69 37.93 3.27
1868 1977 0.171007 CGGTGACACATGAATTGGGC 59.829 55.000 8.08 0.00 28.72 5.36
1870 1981 1.533625 ACCGGTGACACATGAATTGG 58.466 50.000 6.12 0.07 0.00 3.16
1871 1982 4.963276 ATTACCGGTGACACATGAATTG 57.037 40.909 19.93 0.00 0.00 2.32
1888 1999 9.060547 CACTTTTTCCTTTTGTTTGCAAATTAC 57.939 29.630 16.21 3.77 43.26 1.89
1905 2016 5.856126 TGTATCGATCACACACTTTTTCC 57.144 39.130 0.00 0.00 0.00 3.13
1906 2017 8.728088 AAAATGTATCGATCACACACTTTTTC 57.272 30.769 0.00 0.00 0.00 2.29
1918 2029 6.560433 CGCATATCGGCTAAAATGTATCGATC 60.560 42.308 0.00 0.00 38.18 3.69
1932 2043 2.138320 CAAGATGTTCGCATATCGGCT 58.862 47.619 0.00 0.00 38.08 5.52
1946 2057 5.882557 AGTTAAATCACTAGGCACCAAGATG 59.117 40.000 0.00 0.00 0.00 2.90
2063 2181 1.278985 TCACCTGGTGTATGCCTGAAG 59.721 52.381 25.15 0.00 34.79 3.02
2184 2302 1.268352 GTGTCGAGAGCAGAGTTCTGT 59.732 52.381 10.57 0.00 45.45 3.41
2269 2387 1.956297 CTCTCGTCTCCGTAGTCCAT 58.044 55.000 0.00 0.00 35.01 3.41
2397 2515 2.804090 GCGTCGTTGACCTCGGAC 60.804 66.667 0.00 0.00 0.00 4.79
2481 2599 3.112709 GACGCGTCCCTGCAGTTC 61.113 66.667 28.61 0.00 34.15 3.01
2587 2713 4.675114 CAGCCGAGTTTCAACAAATACAAC 59.325 41.667 0.00 0.00 0.00 3.32
2802 3011 3.535962 GGAGAGCAGAGAGGCCGG 61.536 72.222 0.00 0.00 0.00 6.13
2885 3094 3.063084 GTCGTCCTGGAGCTCGGT 61.063 66.667 7.83 0.00 0.00 4.69
2934 3143 2.284921 CCTCAGAGTGGCCTCCCA 60.285 66.667 3.32 0.00 38.58 4.37
3106 3315 2.935446 GCCGTCGTTGTTCGTCACC 61.935 63.158 0.00 0.00 40.80 4.02
3355 3571 1.828660 CCCCTCCTGCTCGTACGAT 60.829 63.158 19.87 0.00 0.00 3.73
3405 3648 4.012374 GAGGAAGCATTTGAAGATGGTCA 58.988 43.478 0.00 0.00 36.79 4.02
3532 3784 2.889045 GGACATCCATATGCAATGCAGT 59.111 45.455 14.98 3.70 37.78 4.40
3548 3804 0.844660 AGCATGCTGATCAGGGACAT 59.155 50.000 21.98 15.34 0.00 3.06
3586 3842 1.946650 GCTCGTCACGGCTGCTATC 60.947 63.158 0.00 0.00 0.00 2.08
3736 3995 0.250295 CACCTTGGCGTCCTCTGAAA 60.250 55.000 0.00 0.00 0.00 2.69
3793 4052 1.285950 GAAGACAAAAGCGCCCACC 59.714 57.895 2.29 0.00 0.00 4.61
3853 4112 2.033407 CGAGACAATGATAAAGCCAGCG 60.033 50.000 0.00 0.00 0.00 5.18
3921 4180 4.970662 ACATATAGCCAACAACTTGCTG 57.029 40.909 0.00 0.00 0.00 4.41
3925 4184 8.574251 TGTCAATAACATATAGCCAACAACTT 57.426 30.769 0.00 0.00 31.20 2.66
3976 4235 6.333416 ACAACTGACTACACTATACATGCTG 58.667 40.000 0.00 0.00 0.00 4.41
4022 4281 8.364894 TGAAGTTGCTCTAAAGTGTGTAAGATA 58.635 33.333 0.00 0.00 0.00 1.98
4024 4283 6.578944 TGAAGTTGCTCTAAAGTGTGTAAGA 58.421 36.000 0.00 0.00 0.00 2.10
4026 4285 7.255104 CCATTGAAGTTGCTCTAAAGTGTGTAA 60.255 37.037 0.00 0.00 0.00 2.41
4027 4286 6.204688 CCATTGAAGTTGCTCTAAAGTGTGTA 59.795 38.462 0.00 0.00 0.00 2.90
4028 4287 5.009010 CCATTGAAGTTGCTCTAAAGTGTGT 59.991 40.000 0.00 0.00 0.00 3.72
4031 4290 4.082571 CCCCATTGAAGTTGCTCTAAAGTG 60.083 45.833 0.00 0.00 0.00 3.16
4032 4291 4.082125 CCCCATTGAAGTTGCTCTAAAGT 58.918 43.478 0.00 0.00 0.00 2.66
4123 4549 2.832563 CCGACCCAAATGCAAAACTTT 58.167 42.857 0.00 0.00 0.00 2.66
4124 4550 1.540146 GCCGACCCAAATGCAAAACTT 60.540 47.619 0.00 0.00 0.00 2.66
4486 5136 0.984230 TTGTCGCCAAGGAAGAGGAT 59.016 50.000 0.00 0.00 0.00 3.24
4487 5137 0.321671 CTTGTCGCCAAGGAAGAGGA 59.678 55.000 0.00 0.00 43.62 3.71
4857 6349 1.280746 CAATATGCCGCGCTCAAGG 59.719 57.895 5.56 0.00 0.00 3.61
4858 6350 0.316442 CACAATATGCCGCGCTCAAG 60.316 55.000 5.56 0.00 0.00 3.02
4859 6351 1.720894 CACAATATGCCGCGCTCAA 59.279 52.632 5.56 0.00 0.00 3.02
4860 6352 3.408755 CACAATATGCCGCGCTCA 58.591 55.556 5.56 3.36 0.00 4.26
4869 6361 6.506500 AAGAGAAGTTCAAGGCACAATATG 57.493 37.500 5.50 0.00 0.00 1.78
4870 6362 5.352569 CGAAGAGAAGTTCAAGGCACAATAT 59.647 40.000 5.50 0.00 0.00 1.28
4871 6363 4.690748 CGAAGAGAAGTTCAAGGCACAATA 59.309 41.667 5.50 0.00 0.00 1.90
4872 6364 3.499918 CGAAGAGAAGTTCAAGGCACAAT 59.500 43.478 5.50 0.00 0.00 2.71
4873 6365 2.872245 CGAAGAGAAGTTCAAGGCACAA 59.128 45.455 5.50 0.00 0.00 3.33
4874 6366 2.158957 ACGAAGAGAAGTTCAAGGCACA 60.159 45.455 5.50 0.00 0.00 4.57
4875 6367 2.476997 GACGAAGAGAAGTTCAAGGCAC 59.523 50.000 5.50 0.00 0.00 5.01
4876 6368 2.548067 GGACGAAGAGAAGTTCAAGGCA 60.548 50.000 5.50 0.00 0.00 4.75
4877 6369 2.070028 GGACGAAGAGAAGTTCAAGGC 58.930 52.381 5.50 0.00 0.00 4.35
4878 6370 3.669251 AGGACGAAGAGAAGTTCAAGG 57.331 47.619 5.50 0.00 0.00 3.61
4879 6371 4.621991 TCAAGGACGAAGAGAAGTTCAAG 58.378 43.478 5.50 0.00 0.00 3.02
4880 6372 4.665833 TCAAGGACGAAGAGAAGTTCAA 57.334 40.909 5.50 0.00 0.00 2.69
4886 6378 3.611766 CGTGTCATCAAGGACGAAGAGAA 60.612 47.826 0.00 0.00 40.72 2.87
4895 6387 3.885724 TTGCTATCGTGTCATCAAGGA 57.114 42.857 0.00 0.00 0.00 3.36
4896 6388 3.249320 CCATTGCTATCGTGTCATCAAGG 59.751 47.826 0.00 0.00 0.00 3.61
4897 6389 3.249320 CCCATTGCTATCGTGTCATCAAG 59.751 47.826 0.00 0.00 0.00 3.02
4898 6390 3.118445 TCCCATTGCTATCGTGTCATCAA 60.118 43.478 0.00 0.00 0.00 2.57
4899 6391 2.433970 TCCCATTGCTATCGTGTCATCA 59.566 45.455 0.00 0.00 0.00 3.07
4900 6392 3.062763 CTCCCATTGCTATCGTGTCATC 58.937 50.000 0.00 0.00 0.00 2.92
4901 6393 2.700371 TCTCCCATTGCTATCGTGTCAT 59.300 45.455 0.00 0.00 0.00 3.06
4902 6394 2.101415 CTCTCCCATTGCTATCGTGTCA 59.899 50.000 0.00 0.00 0.00 3.58
4904 6396 1.414181 CCTCTCCCATTGCTATCGTGT 59.586 52.381 0.00 0.00 0.00 4.49
4905 6397 1.414181 ACCTCTCCCATTGCTATCGTG 59.586 52.381 0.00 0.00 0.00 4.35
4906 6398 1.794714 ACCTCTCCCATTGCTATCGT 58.205 50.000 0.00 0.00 0.00 3.73
4907 6399 2.103094 TCAACCTCTCCCATTGCTATCG 59.897 50.000 0.00 0.00 0.00 2.92
4908 6400 3.845781 TCAACCTCTCCCATTGCTATC 57.154 47.619 0.00 0.00 0.00 2.08
4909 6401 3.686691 GCTTCAACCTCTCCCATTGCTAT 60.687 47.826 0.00 0.00 0.00 2.97
4910 6402 2.356125 GCTTCAACCTCTCCCATTGCTA 60.356 50.000 0.00 0.00 0.00 3.49
4911 6403 1.615384 GCTTCAACCTCTCCCATTGCT 60.615 52.381 0.00 0.00 0.00 3.91
4912 6404 0.813821 GCTTCAACCTCTCCCATTGC 59.186 55.000 0.00 0.00 0.00 3.56
4913 6405 1.815003 GTGCTTCAACCTCTCCCATTG 59.185 52.381 0.00 0.00 0.00 2.82
4914 6406 1.707427 AGTGCTTCAACCTCTCCCATT 59.293 47.619 0.00 0.00 0.00 3.16
4915 6407 1.366319 AGTGCTTCAACCTCTCCCAT 58.634 50.000 0.00 0.00 0.00 4.00
4916 6408 1.140312 AAGTGCTTCAACCTCTCCCA 58.860 50.000 0.00 0.00 0.00 4.37
4917 6409 1.528129 CAAGTGCTTCAACCTCTCCC 58.472 55.000 0.00 0.00 0.00 4.30
4921 6413 1.251251 ATGGCAAGTGCTTCAACCTC 58.749 50.000 2.85 0.00 41.70 3.85
4922 6414 1.342174 CAATGGCAAGTGCTTCAACCT 59.658 47.619 2.85 0.00 41.70 3.50
4923 6415 1.069049 ACAATGGCAAGTGCTTCAACC 59.931 47.619 2.85 0.00 41.70 3.77
4924 6416 2.129607 CACAATGGCAAGTGCTTCAAC 58.870 47.619 9.96 0.00 41.70 3.18
4925 6417 1.755959 ACACAATGGCAAGTGCTTCAA 59.244 42.857 19.40 0.00 39.30 2.69
4926 6418 1.401761 ACACAATGGCAAGTGCTTCA 58.598 45.000 19.40 0.00 39.30 3.02
4927 6419 2.129607 CAACACAATGGCAAGTGCTTC 58.870 47.619 19.40 0.00 39.30 3.86
4928 6420 1.755959 TCAACACAATGGCAAGTGCTT 59.244 42.857 19.40 11.96 39.30 3.91
4929 6421 1.401761 TCAACACAATGGCAAGTGCT 58.598 45.000 19.40 8.13 39.30 4.40
4930 6422 1.860326 GTTCAACACAATGGCAAGTGC 59.140 47.619 19.40 0.00 39.30 4.40
4931 6423 2.101249 AGGTTCAACACAATGGCAAGTG 59.899 45.455 18.29 18.29 41.40 3.16
4932 6424 2.387757 AGGTTCAACACAATGGCAAGT 58.612 42.857 0.00 0.00 0.00 3.16
4934 6426 2.762887 TCAAGGTTCAACACAATGGCAA 59.237 40.909 0.00 0.00 0.00 4.52
4936 6428 3.451141 TTCAAGGTTCAACACAATGGC 57.549 42.857 0.00 0.00 0.00 4.40
4937 6429 3.742369 GCATTCAAGGTTCAACACAATGG 59.258 43.478 0.00 0.00 0.00 3.16
4938 6430 3.742369 GGCATTCAAGGTTCAACACAATG 59.258 43.478 0.00 0.00 0.00 2.82
4939 6431 3.642848 AGGCATTCAAGGTTCAACACAAT 59.357 39.130 0.00 0.00 0.00 2.71
4940 6432 3.030291 AGGCATTCAAGGTTCAACACAA 58.970 40.909 0.00 0.00 0.00 3.33
4941 6433 2.622942 GAGGCATTCAAGGTTCAACACA 59.377 45.455 0.00 0.00 0.00 3.72
4943 6435 2.238521 GGAGGCATTCAAGGTTCAACA 58.761 47.619 0.00 0.00 0.00 3.33
4944 6436 2.238521 TGGAGGCATTCAAGGTTCAAC 58.761 47.619 0.00 0.00 0.00 3.18
4945 6437 2.673775 TGGAGGCATTCAAGGTTCAA 57.326 45.000 0.00 0.00 0.00 2.69
4946 6438 2.673775 TTGGAGGCATTCAAGGTTCA 57.326 45.000 0.00 0.00 0.00 3.18
4947 6439 2.353109 GCTTTGGAGGCATTCAAGGTTC 60.353 50.000 3.30 0.00 0.00 3.62
4948 6440 1.620323 GCTTTGGAGGCATTCAAGGTT 59.380 47.619 3.30 0.00 0.00 3.50
4949 6441 1.203100 AGCTTTGGAGGCATTCAAGGT 60.203 47.619 3.30 0.00 0.00 3.50
4950 6442 1.553706 AGCTTTGGAGGCATTCAAGG 58.446 50.000 0.00 0.00 0.00 3.61
4951 6443 2.559668 TCAAGCTTTGGAGGCATTCAAG 59.440 45.455 0.00 0.00 0.00 3.02
4952 6444 2.596346 TCAAGCTTTGGAGGCATTCAA 58.404 42.857 0.00 0.00 0.00 2.69
4953 6445 2.291209 TCAAGCTTTGGAGGCATTCA 57.709 45.000 0.00 0.00 0.00 2.57
4954 6446 3.665745 TTTCAAGCTTTGGAGGCATTC 57.334 42.857 0.00 0.00 0.00 2.67
4955 6447 3.867216 GCATTTCAAGCTTTGGAGGCATT 60.867 43.478 0.00 0.00 0.00 3.56
4956 6448 2.354403 GCATTTCAAGCTTTGGAGGCAT 60.354 45.455 0.00 0.00 0.00 4.40
4957 6449 1.001181 GCATTTCAAGCTTTGGAGGCA 59.999 47.619 0.00 0.00 0.00 4.75
4959 6451 1.897802 AGGCATTTCAAGCTTTGGAGG 59.102 47.619 0.00 0.00 0.00 4.30
4960 6452 3.507233 TGTAGGCATTTCAAGCTTTGGAG 59.493 43.478 0.00 0.00 0.00 3.86
4961 6453 3.495331 TGTAGGCATTTCAAGCTTTGGA 58.505 40.909 0.00 0.00 0.00 3.53
4962 6454 3.940209 TGTAGGCATTTCAAGCTTTGG 57.060 42.857 0.00 0.00 0.00 3.28
4963 6455 6.203338 ACATTTTGTAGGCATTTCAAGCTTTG 59.797 34.615 0.00 0.00 0.00 2.77
4964 6456 6.290605 ACATTTTGTAGGCATTTCAAGCTTT 58.709 32.000 0.00 0.00 0.00 3.51
4966 6458 5.473066 ACATTTTGTAGGCATTTCAAGCT 57.527 34.783 0.00 0.00 0.00 3.74
4968 6460 6.705381 TGGAAACATTTTGTAGGCATTTCAAG 59.295 34.615 0.00 0.00 33.40 3.02
4969 6461 6.586344 TGGAAACATTTTGTAGGCATTTCAA 58.414 32.000 0.00 0.00 33.40 2.69
4970 6462 6.166984 TGGAAACATTTTGTAGGCATTTCA 57.833 33.333 0.00 0.00 33.40 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.