Multiple sequence alignment - TraesCS5D01G342100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G342100 chr5D 100.000 3305 0 0 1 3305 430163063 430166367 0.000000e+00 6104.0
1 TraesCS5D01G342100 chr5D 92.091 1454 106 6 997 2442 430445541 430446993 0.000000e+00 2039.0
2 TraesCS5D01G342100 chr5D 91.143 1321 117 0 997 2317 430511644 430512964 0.000000e+00 1792.0
3 TraesCS5D01G342100 chr5D 84.571 525 76 5 2695 3216 45057699 45057177 1.760000e-142 516.0
4 TraesCS5D01G342100 chr5D 81.971 477 48 19 2860 3305 2283815 2283346 1.450000e-98 370.0
5 TraesCS5D01G342100 chr5D 97.059 34 0 1 207 240 85516614 85516646 4.610000e-04 56.5
6 TraesCS5D01G342100 chr5B 94.895 2762 98 14 560 3305 519450900 519453634 0.000000e+00 4279.0
7 TraesCS5D01G342100 chr5B 91.763 1469 112 4 997 2457 519661043 519662510 0.000000e+00 2034.0
8 TraesCS5D01G342100 chr5B 89.920 1498 137 7 997 2487 520036805 520038295 0.000000e+00 1917.0
9 TraesCS5D01G342100 chr5B 91.370 1321 114 0 997 2317 520046519 520047839 0.000000e+00 1808.0
10 TraesCS5D01G342100 chr5A 93.491 2074 89 16 555 2604 545870219 545872270 0.000000e+00 3040.0
11 TraesCS5D01G342100 chr5A 90.770 1441 119 7 997 2428 545984616 545986051 0.000000e+00 1912.0
12 TraesCS5D01G342100 chr5A 90.496 1452 128 5 998 2442 546146219 546147667 0.000000e+00 1908.0
13 TraesCS5D01G342100 chr5A 87.731 595 59 8 2695 3282 545872768 545873355 0.000000e+00 682.0
14 TraesCS5D01G342100 chr5A 80.282 355 50 9 2818 3157 602259819 602260168 1.970000e-62 250.0
15 TraesCS5D01G342100 chr2A 86.450 524 56 11 2699 3216 1553776 1554290 8.010000e-156 560.0
16 TraesCS5D01G342100 chr1A 85.878 524 70 4 2695 3216 238208633 238209154 3.730000e-154 555.0
17 TraesCS5D01G342100 chr1A 84.848 66 8 1 2536 2599 504269087 504269022 7.660000e-07 65.8
18 TraesCS5D01G342100 chrUn 82.055 652 65 27 2695 3303 300168440 300167798 2.940000e-140 508.0
19 TraesCS5D01G342100 chr7B 83.713 307 36 6 2695 2989 666014705 666015009 9.030000e-71 278.0
20 TraesCS5D01G342100 chr2D 84.043 94 10 2 2487 2580 27802130 27802042 5.880000e-13 86.1
21 TraesCS5D01G342100 chr6A 94.872 39 2 0 202 240 87230990 87230952 9.900000e-06 62.1
22 TraesCS5D01G342100 chr6B 96.875 32 0 1 3268 3299 654821910 654821880 6.000000e-03 52.8
23 TraesCS5D01G342100 chr3D 96.875 32 0 1 208 239 491994684 491994654 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G342100 chr5D 430163063 430166367 3304 False 6104 6104 100.000 1 3305 1 chr5D.!!$F2 3304
1 TraesCS5D01G342100 chr5D 430445541 430446993 1452 False 2039 2039 92.091 997 2442 1 chr5D.!!$F3 1445
2 TraesCS5D01G342100 chr5D 430511644 430512964 1320 False 1792 1792 91.143 997 2317 1 chr5D.!!$F4 1320
3 TraesCS5D01G342100 chr5D 45057177 45057699 522 True 516 516 84.571 2695 3216 1 chr5D.!!$R2 521
4 TraesCS5D01G342100 chr5B 519450900 519453634 2734 False 4279 4279 94.895 560 3305 1 chr5B.!!$F1 2745
5 TraesCS5D01G342100 chr5B 519661043 519662510 1467 False 2034 2034 91.763 997 2457 1 chr5B.!!$F2 1460
6 TraesCS5D01G342100 chr5B 520036805 520038295 1490 False 1917 1917 89.920 997 2487 1 chr5B.!!$F3 1490
7 TraesCS5D01G342100 chr5B 520046519 520047839 1320 False 1808 1808 91.370 997 2317 1 chr5B.!!$F4 1320
8 TraesCS5D01G342100 chr5A 545984616 545986051 1435 False 1912 1912 90.770 997 2428 1 chr5A.!!$F1 1431
9 TraesCS5D01G342100 chr5A 546146219 546147667 1448 False 1908 1908 90.496 998 2442 1 chr5A.!!$F2 1444
10 TraesCS5D01G342100 chr5A 545870219 545873355 3136 False 1861 3040 90.611 555 3282 2 chr5A.!!$F4 2727
11 TraesCS5D01G342100 chr2A 1553776 1554290 514 False 560 560 86.450 2699 3216 1 chr2A.!!$F1 517
12 TraesCS5D01G342100 chr1A 238208633 238209154 521 False 555 555 85.878 2695 3216 1 chr1A.!!$F1 521
13 TraesCS5D01G342100 chrUn 300167798 300168440 642 True 508 508 82.055 2695 3303 1 chrUn.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.040514 CGCACCGATTGAACTGCAAA 60.041 50.0 0.0 0.0 40.48 3.68 F
799 822 0.179045 ATAGCTCGCACCATTGTCCC 60.179 55.0 0.0 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 1953 1.004918 GTTCAGGAGGTCACCCACG 60.005 63.158 0.00 0.00 0.0 4.94 R
2505 2553 0.534203 TTCTCTCCCGTTGCAACACC 60.534 55.000 28.01 2.77 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.400579 CATGGAGTATGTTGCGAATCTATC 57.599 41.667 0.00 0.00 31.92 2.08
29 30 5.529581 TGGAGTATGTTGCGAATCTATCA 57.470 39.130 0.00 0.00 0.00 2.15
30 31 6.101650 TGGAGTATGTTGCGAATCTATCAT 57.898 37.500 0.00 0.00 0.00 2.45
31 32 6.524734 TGGAGTATGTTGCGAATCTATCATT 58.475 36.000 0.00 0.00 0.00 2.57
32 33 6.992123 TGGAGTATGTTGCGAATCTATCATTT 59.008 34.615 0.00 0.00 0.00 2.32
33 34 7.498900 TGGAGTATGTTGCGAATCTATCATTTT 59.501 33.333 0.00 0.00 0.00 1.82
34 35 7.800380 GGAGTATGTTGCGAATCTATCATTTTG 59.200 37.037 0.00 0.00 0.00 2.44
35 36 8.437360 AGTATGTTGCGAATCTATCATTTTGA 57.563 30.769 0.00 0.00 0.00 2.69
36 37 8.892723 AGTATGTTGCGAATCTATCATTTTGAA 58.107 29.630 0.00 0.00 0.00 2.69
37 38 9.502145 GTATGTTGCGAATCTATCATTTTGAAA 57.498 29.630 0.00 0.00 0.00 2.69
38 39 7.795431 TGTTGCGAATCTATCATTTTGAAAC 57.205 32.000 0.00 0.00 0.00 2.78
39 40 7.592938 TGTTGCGAATCTATCATTTTGAAACT 58.407 30.769 0.00 0.00 29.42 2.66
40 41 8.081633 TGTTGCGAATCTATCATTTTGAAACTT 58.918 29.630 0.00 0.00 29.42 2.66
41 42 8.915654 GTTGCGAATCTATCATTTTGAAACTTT 58.084 29.630 0.00 0.00 0.00 2.66
42 43 9.474920 TTGCGAATCTATCATTTTGAAACTTTT 57.525 25.926 0.00 0.00 0.00 2.27
43 44 8.914654 TGCGAATCTATCATTTTGAAACTTTTG 58.085 29.630 0.00 0.00 0.00 2.44
44 45 8.915654 GCGAATCTATCATTTTGAAACTTTTGT 58.084 29.630 0.00 0.00 0.00 2.83
52 53 9.609950 ATCATTTTGAAACTTTTGTTGTTGTTG 57.390 25.926 0.00 0.00 42.67 3.33
53 54 7.589221 TCATTTTGAAACTTTTGTTGTTGTTGC 59.411 29.630 0.00 0.00 42.67 4.17
54 55 4.637574 TGAAACTTTTGTTGTTGTTGCG 57.362 36.364 0.00 0.00 42.67 4.85
55 56 4.299155 TGAAACTTTTGTTGTTGTTGCGA 58.701 34.783 0.00 0.00 42.67 5.10
56 57 4.745125 TGAAACTTTTGTTGTTGTTGCGAA 59.255 33.333 0.00 0.00 42.67 4.70
57 58 5.406780 TGAAACTTTTGTTGTTGTTGCGAAT 59.593 32.000 0.00 0.00 42.67 3.34
58 59 5.448926 AACTTTTGTTGTTGTTGCGAATC 57.551 34.783 0.00 0.00 41.77 2.52
59 60 3.545873 ACTTTTGTTGTTGTTGCGAATCG 59.454 39.130 0.00 0.00 0.00 3.34
60 61 3.406728 TTTGTTGTTGTTGCGAATCGA 57.593 38.095 6.91 0.00 0.00 3.59
61 62 3.617540 TTGTTGTTGTTGCGAATCGAT 57.382 38.095 6.91 0.00 0.00 3.59
62 63 3.181826 TGTTGTTGTTGCGAATCGATC 57.818 42.857 6.91 0.00 0.00 3.69
63 64 2.545946 TGTTGTTGTTGCGAATCGATCA 59.454 40.909 6.91 0.00 0.00 2.92
64 65 3.188254 TGTTGTTGTTGCGAATCGATCAT 59.812 39.130 6.91 0.00 0.00 2.45
65 66 4.158384 GTTGTTGTTGCGAATCGATCATT 58.842 39.130 6.91 0.00 0.00 2.57
66 67 4.418013 TGTTGTTGCGAATCGATCATTT 57.582 36.364 6.91 0.00 0.00 2.32
67 68 4.793071 TGTTGTTGCGAATCGATCATTTT 58.207 34.783 6.91 0.00 0.00 1.82
68 69 4.616381 TGTTGTTGCGAATCGATCATTTTG 59.384 37.500 6.91 0.00 0.00 2.44
69 70 4.676849 TGTTGCGAATCGATCATTTTGA 57.323 36.364 6.91 0.00 0.00 2.69
70 71 5.040715 TGTTGCGAATCGATCATTTTGAA 57.959 34.783 6.91 0.00 0.00 2.69
71 72 5.456265 TGTTGCGAATCGATCATTTTGAAA 58.544 33.333 6.91 0.00 0.00 2.69
72 73 5.341993 TGTTGCGAATCGATCATTTTGAAAC 59.658 36.000 6.91 0.00 0.00 2.78
73 74 5.295431 TGCGAATCGATCATTTTGAAACT 57.705 34.783 6.91 0.00 0.00 2.66
74 75 5.323900 TGCGAATCGATCATTTTGAAACTC 58.676 37.500 6.91 0.00 0.00 3.01
75 76 5.106752 TGCGAATCGATCATTTTGAAACTCA 60.107 36.000 6.91 0.00 0.00 3.41
76 77 5.225949 GCGAATCGATCATTTTGAAACTCAC 59.774 40.000 6.91 0.00 0.00 3.51
77 78 5.445955 CGAATCGATCATTTTGAAACTCACG 59.554 40.000 0.00 0.00 0.00 4.35
78 79 5.862924 ATCGATCATTTTGAAACTCACGT 57.137 34.783 0.00 0.00 0.00 4.49
79 80 5.017484 TCGATCATTTTGAAACTCACGTG 57.983 39.130 9.94 9.94 0.00 4.49
80 81 4.509970 TCGATCATTTTGAAACTCACGTGT 59.490 37.500 16.51 0.00 0.00 4.49
81 82 5.692654 TCGATCATTTTGAAACTCACGTGTA 59.307 36.000 16.51 1.31 0.00 2.90
82 83 5.783654 CGATCATTTTGAAACTCACGTGTAC 59.216 40.000 16.51 4.58 0.00 2.90
83 84 5.412526 TCATTTTGAAACTCACGTGTACC 57.587 39.130 16.51 2.63 0.00 3.34
84 85 4.876679 TCATTTTGAAACTCACGTGTACCA 59.123 37.500 16.51 5.23 0.00 3.25
85 86 4.868450 TTTTGAAACTCACGTGTACCAG 57.132 40.909 16.51 7.98 0.00 4.00
86 87 3.804786 TTGAAACTCACGTGTACCAGA 57.195 42.857 16.51 0.00 0.00 3.86
87 88 3.088194 TGAAACTCACGTGTACCAGAC 57.912 47.619 16.51 3.56 0.00 3.51
88 89 2.427812 TGAAACTCACGTGTACCAGACA 59.572 45.455 16.51 6.05 34.94 3.41
89 90 2.795175 AACTCACGTGTACCAGACAG 57.205 50.000 16.51 5.24 39.29 3.51
90 91 1.977056 ACTCACGTGTACCAGACAGA 58.023 50.000 16.51 0.00 39.29 3.41
91 92 2.515854 ACTCACGTGTACCAGACAGAT 58.484 47.619 16.51 0.00 39.29 2.90
92 93 3.682696 ACTCACGTGTACCAGACAGATA 58.317 45.455 16.51 0.00 39.29 1.98
93 94 4.077108 ACTCACGTGTACCAGACAGATAA 58.923 43.478 16.51 0.00 39.29 1.75
94 95 4.521639 ACTCACGTGTACCAGACAGATAAA 59.478 41.667 16.51 0.00 39.29 1.40
95 96 4.801891 TCACGTGTACCAGACAGATAAAC 58.198 43.478 16.51 0.00 39.29 2.01
96 97 4.278919 TCACGTGTACCAGACAGATAAACA 59.721 41.667 16.51 0.00 39.29 2.83
97 98 5.047590 TCACGTGTACCAGACAGATAAACAT 60.048 40.000 16.51 0.00 39.29 2.71
98 99 5.062183 CACGTGTACCAGACAGATAAACATG 59.938 44.000 7.58 0.00 39.29 3.21
99 100 4.566759 CGTGTACCAGACAGATAAACATGG 59.433 45.833 0.00 0.00 39.29 3.66
100 101 5.623596 CGTGTACCAGACAGATAAACATGGA 60.624 44.000 0.00 0.00 39.29 3.41
101 102 5.812642 GTGTACCAGACAGATAAACATGGAG 59.187 44.000 0.00 0.00 39.29 3.86
102 103 5.483937 TGTACCAGACAGATAAACATGGAGT 59.516 40.000 0.00 0.00 32.86 3.85
103 104 6.666113 TGTACCAGACAGATAAACATGGAGTA 59.334 38.462 0.00 0.00 32.86 2.59
104 105 5.978814 ACCAGACAGATAAACATGGAGTAC 58.021 41.667 0.00 0.00 0.00 2.73
105 106 5.043903 CCAGACAGATAAACATGGAGTACG 58.956 45.833 0.00 0.00 0.00 3.67
106 107 5.394224 CCAGACAGATAAACATGGAGTACGT 60.394 44.000 0.00 0.00 0.00 3.57
107 108 6.100004 CAGACAGATAAACATGGAGTACGTT 58.900 40.000 0.00 0.00 0.00 3.99
108 109 6.035005 CAGACAGATAAACATGGAGTACGTTG 59.965 42.308 0.00 0.00 0.00 4.10
109 110 5.790593 ACAGATAAACATGGAGTACGTTGT 58.209 37.500 0.00 0.00 0.00 3.32
110 111 5.867716 ACAGATAAACATGGAGTACGTTGTC 59.132 40.000 0.00 0.00 0.00 3.18
111 112 5.291128 CAGATAAACATGGAGTACGTTGTCC 59.709 44.000 8.59 8.59 0.00 4.02
112 113 3.764237 AAACATGGAGTACGTTGTCCT 57.236 42.857 14.94 0.00 33.57 3.85
113 114 4.877378 AAACATGGAGTACGTTGTCCTA 57.123 40.909 14.94 4.62 33.57 2.94
114 115 4.877378 AACATGGAGTACGTTGTCCTAA 57.123 40.909 14.94 0.00 33.57 2.69
115 116 4.877378 ACATGGAGTACGTTGTCCTAAA 57.123 40.909 14.94 0.00 33.57 1.85
116 117 4.563061 ACATGGAGTACGTTGTCCTAAAC 58.437 43.478 14.94 0.00 33.57 2.01
117 118 4.039488 ACATGGAGTACGTTGTCCTAAACA 59.961 41.667 14.94 0.00 35.59 2.83
118 119 3.981211 TGGAGTACGTTGTCCTAAACAC 58.019 45.455 14.94 0.00 37.70 3.32
119 120 3.384146 TGGAGTACGTTGTCCTAAACACA 59.616 43.478 14.94 0.00 37.70 3.72
120 121 4.039488 TGGAGTACGTTGTCCTAAACACAT 59.961 41.667 14.94 0.00 37.70 3.21
121 122 5.243507 TGGAGTACGTTGTCCTAAACACATA 59.756 40.000 14.94 0.00 37.70 2.29
122 123 6.071221 TGGAGTACGTTGTCCTAAACACATAT 60.071 38.462 14.94 0.00 37.70 1.78
123 124 6.815142 GGAGTACGTTGTCCTAAACACATATT 59.185 38.462 8.32 0.00 37.70 1.28
124 125 7.975616 GGAGTACGTTGTCCTAAACACATATTA 59.024 37.037 8.32 0.00 37.70 0.98
125 126 8.693542 AGTACGTTGTCCTAAACACATATTAC 57.306 34.615 0.00 0.00 37.70 1.89
126 127 6.973229 ACGTTGTCCTAAACACATATTACC 57.027 37.500 0.00 0.00 37.70 2.85
127 128 6.704310 ACGTTGTCCTAAACACATATTACCT 58.296 36.000 0.00 0.00 37.70 3.08
128 129 6.815142 ACGTTGTCCTAAACACATATTACCTC 59.185 38.462 0.00 0.00 37.70 3.85
129 130 6.257193 CGTTGTCCTAAACACATATTACCTCC 59.743 42.308 0.00 0.00 37.70 4.30
130 131 5.909477 TGTCCTAAACACATATTACCTCCG 58.091 41.667 0.00 0.00 31.20 4.63
131 132 4.748600 GTCCTAAACACATATTACCTCCGC 59.251 45.833 0.00 0.00 0.00 5.54
132 133 4.406326 TCCTAAACACATATTACCTCCGCA 59.594 41.667 0.00 0.00 0.00 5.69
133 134 4.510340 CCTAAACACATATTACCTCCGCAC 59.490 45.833 0.00 0.00 0.00 5.34
134 135 2.614829 ACACATATTACCTCCGCACC 57.385 50.000 0.00 0.00 0.00 5.01
135 136 1.202486 ACACATATTACCTCCGCACCG 60.202 52.381 0.00 0.00 0.00 4.94
136 137 1.067974 CACATATTACCTCCGCACCGA 59.932 52.381 0.00 0.00 0.00 4.69
137 138 1.968493 ACATATTACCTCCGCACCGAT 59.032 47.619 0.00 0.00 0.00 4.18
138 139 2.367567 ACATATTACCTCCGCACCGATT 59.632 45.455 0.00 0.00 0.00 3.34
139 140 2.519377 TATTACCTCCGCACCGATTG 57.481 50.000 0.00 0.00 0.00 2.67
140 141 0.828022 ATTACCTCCGCACCGATTGA 59.172 50.000 0.00 0.00 0.00 2.57
141 142 0.609151 TTACCTCCGCACCGATTGAA 59.391 50.000 0.00 0.00 0.00 2.69
142 143 0.108520 TACCTCCGCACCGATTGAAC 60.109 55.000 0.00 0.00 0.00 3.18
143 144 1.079127 CCTCCGCACCGATTGAACT 60.079 57.895 0.00 0.00 0.00 3.01
144 145 1.361668 CCTCCGCACCGATTGAACTG 61.362 60.000 0.00 0.00 0.00 3.16
145 146 1.970917 CTCCGCACCGATTGAACTGC 61.971 60.000 0.00 0.00 0.00 4.40
146 147 2.324330 CCGCACCGATTGAACTGCA 61.324 57.895 0.00 0.00 0.00 4.41
147 148 1.573932 CGCACCGATTGAACTGCAA 59.426 52.632 0.00 0.00 41.53 4.08
148 149 0.040514 CGCACCGATTGAACTGCAAA 60.041 50.000 0.00 0.00 40.48 3.68
149 150 1.599171 CGCACCGATTGAACTGCAAAA 60.599 47.619 0.00 0.00 40.48 2.44
150 151 2.468831 GCACCGATTGAACTGCAAAAA 58.531 42.857 0.00 0.00 40.48 1.94
151 152 3.059166 GCACCGATTGAACTGCAAAAAT 58.941 40.909 0.00 0.00 40.48 1.82
152 153 3.120923 GCACCGATTGAACTGCAAAAATG 60.121 43.478 0.00 0.00 40.48 2.32
153 154 4.050553 CACCGATTGAACTGCAAAAATGT 58.949 39.130 0.00 0.00 40.48 2.71
154 155 4.050553 ACCGATTGAACTGCAAAAATGTG 58.949 39.130 0.00 0.00 40.48 3.21
155 156 4.050553 CCGATTGAACTGCAAAAATGTGT 58.949 39.130 0.00 0.00 40.48 3.72
156 157 4.148696 CCGATTGAACTGCAAAAATGTGTC 59.851 41.667 0.00 0.00 40.48 3.67
157 158 4.977963 CGATTGAACTGCAAAAATGTGTCT 59.022 37.500 0.00 0.00 40.48 3.41
158 159 5.459762 CGATTGAACTGCAAAAATGTGTCTT 59.540 36.000 0.00 0.00 40.48 3.01
159 160 6.636447 CGATTGAACTGCAAAAATGTGTCTTA 59.364 34.615 0.00 0.00 40.48 2.10
160 161 7.326789 CGATTGAACTGCAAAAATGTGTCTTAT 59.673 33.333 0.00 0.00 40.48 1.73
161 162 9.624697 GATTGAACTGCAAAAATGTGTCTTATA 57.375 29.630 0.00 0.00 40.48 0.98
163 164 9.979578 TTGAACTGCAAAAATGTGTCTTATATT 57.020 25.926 0.00 0.00 32.46 1.28
164 165 9.979578 TGAACTGCAAAAATGTGTCTTATATTT 57.020 25.926 0.00 0.00 32.25 1.40
167 168 9.979578 ACTGCAAAAATGTGTCTTATATTTTGA 57.020 25.926 11.65 0.00 38.60 2.69
204 205 9.129532 GTACCTATGTACATACTTTGTCCTACT 57.870 37.037 11.62 0.00 45.50 2.57
206 207 9.705103 ACCTATGTACATACTTTGTCCTACTAA 57.295 33.333 11.62 0.00 39.87 2.24
207 208 9.962783 CCTATGTACATACTTTGTCCTACTAAC 57.037 37.037 11.62 0.00 39.87 2.34
211 212 9.745018 TGTACATACTTTGTCCTACTAACTACT 57.255 33.333 0.00 0.00 39.87 2.57
213 214 8.291191 ACATACTTTGTCCTACTAACTACTCC 57.709 38.462 0.00 0.00 30.89 3.85
214 215 7.341512 ACATACTTTGTCCTACTAACTACTCCC 59.658 40.741 0.00 0.00 30.89 4.30
215 216 5.901598 ACTTTGTCCTACTAACTACTCCCT 58.098 41.667 0.00 0.00 0.00 4.20
216 217 5.951148 ACTTTGTCCTACTAACTACTCCCTC 59.049 44.000 0.00 0.00 0.00 4.30
217 218 4.516652 TGTCCTACTAACTACTCCCTCC 57.483 50.000 0.00 0.00 0.00 4.30
218 219 3.854389 TGTCCTACTAACTACTCCCTCCA 59.146 47.826 0.00 0.00 0.00 3.86
219 220 4.481280 TGTCCTACTAACTACTCCCTCCAT 59.519 45.833 0.00 0.00 0.00 3.41
220 221 5.043582 TGTCCTACTAACTACTCCCTCCATT 60.044 44.000 0.00 0.00 0.00 3.16
221 222 5.898397 GTCCTACTAACTACTCCCTCCATTT 59.102 44.000 0.00 0.00 0.00 2.32
222 223 6.040729 GTCCTACTAACTACTCCCTCCATTTC 59.959 46.154 0.00 0.00 0.00 2.17
223 224 6.068379 TCCTACTAACTACTCCCTCCATTTCT 60.068 42.308 0.00 0.00 0.00 2.52
224 225 7.129972 TCCTACTAACTACTCCCTCCATTTCTA 59.870 40.741 0.00 0.00 0.00 2.10
225 226 7.783596 CCTACTAACTACTCCCTCCATTTCTAA 59.216 40.741 0.00 0.00 0.00 2.10
226 227 9.198475 CTACTAACTACTCCCTCCATTTCTAAA 57.802 37.037 0.00 0.00 0.00 1.85
227 228 8.625467 ACTAACTACTCCCTCCATTTCTAAAT 57.375 34.615 0.00 0.00 0.00 1.40
228 229 9.725206 ACTAACTACTCCCTCCATTTCTAAATA 57.275 33.333 0.00 0.00 0.00 1.40
235 236 8.314751 ACTCCCTCCATTTCTAAATATATGTCG 58.685 37.037 0.00 0.00 0.00 4.35
236 237 8.202461 TCCCTCCATTTCTAAATATATGTCGT 57.798 34.615 0.00 0.00 0.00 4.34
237 238 8.656806 TCCCTCCATTTCTAAATATATGTCGTT 58.343 33.333 0.00 0.00 0.00 3.85
238 239 9.284968 CCCTCCATTTCTAAATATATGTCGTTT 57.715 33.333 0.00 0.00 0.00 3.60
254 255 6.922247 TGTCGTTTTGGTAGTACAAATTGA 57.078 33.333 0.00 0.00 39.80 2.57
255 256 7.499321 TGTCGTTTTGGTAGTACAAATTGAT 57.501 32.000 0.00 0.00 39.80 2.57
256 257 7.577979 TGTCGTTTTGGTAGTACAAATTGATC 58.422 34.615 0.00 0.00 39.80 2.92
257 258 7.442969 TGTCGTTTTGGTAGTACAAATTGATCT 59.557 33.333 0.00 0.15 39.80 2.75
258 259 8.928733 GTCGTTTTGGTAGTACAAATTGATCTA 58.071 33.333 0.00 0.00 39.80 1.98
259 260 9.146984 TCGTTTTGGTAGTACAAATTGATCTAG 57.853 33.333 0.00 0.00 39.80 2.43
260 261 7.903431 CGTTTTGGTAGTACAAATTGATCTAGC 59.097 37.037 16.87 16.87 39.80 3.42
261 262 8.726988 GTTTTGGTAGTACAAATTGATCTAGCA 58.273 33.333 19.89 19.89 39.80 3.49
262 263 8.856153 TTTGGTAGTACAAATTGATCTAGCAA 57.144 30.769 25.09 25.09 39.62 3.91
263 264 8.856153 TTGGTAGTACAAATTGATCTAGCAAA 57.144 30.769 25.83 17.36 39.12 3.68
264 265 8.856153 TGGTAGTACAAATTGATCTAGCAAAA 57.144 30.769 20.74 7.86 34.68 2.44
265 266 8.726988 TGGTAGTACAAATTGATCTAGCAAAAC 58.273 33.333 20.74 6.72 34.68 2.43
266 267 7.903431 GGTAGTACAAATTGATCTAGCAAAACG 59.097 37.037 17.91 0.00 31.31 3.60
267 268 7.435068 AGTACAAATTGATCTAGCAAAACGT 57.565 32.000 0.00 0.00 0.00 3.99
268 269 7.298122 AGTACAAATTGATCTAGCAAAACGTG 58.702 34.615 0.00 0.00 0.00 4.49
269 270 6.072112 ACAAATTGATCTAGCAAAACGTGT 57.928 33.333 0.00 0.00 0.00 4.49
270 271 6.503524 ACAAATTGATCTAGCAAAACGTGTT 58.496 32.000 0.00 0.00 0.00 3.32
271 272 7.644490 ACAAATTGATCTAGCAAAACGTGTTA 58.356 30.769 0.00 0.00 0.00 2.41
272 273 8.296713 ACAAATTGATCTAGCAAAACGTGTTAT 58.703 29.630 0.00 0.00 0.00 1.89
273 274 9.767684 CAAATTGATCTAGCAAAACGTGTTATA 57.232 29.630 0.00 0.00 0.00 0.98
279 280 9.564041 GATCTAGCAAAACGTGTTATATTTACG 57.436 33.333 0.00 0.00 42.98 3.18
280 281 8.686397 TCTAGCAAAACGTGTTATATTTACGA 57.314 30.769 11.42 0.00 40.01 3.43
281 282 8.800972 TCTAGCAAAACGTGTTATATTTACGAG 58.199 33.333 11.42 0.00 40.01 4.18
282 283 6.245724 AGCAAAACGTGTTATATTTACGAGC 58.754 36.000 11.42 9.50 40.01 5.03
283 284 5.166583 GCAAAACGTGTTATATTTACGAGCG 59.833 40.000 11.42 0.00 40.01 5.03
284 285 5.379757 AAACGTGTTATATTTACGAGCGG 57.620 39.130 11.42 0.00 40.01 5.52
285 286 4.291540 ACGTGTTATATTTACGAGCGGA 57.708 40.909 11.42 0.00 40.01 5.54
286 287 4.285292 ACGTGTTATATTTACGAGCGGAG 58.715 43.478 11.42 0.00 40.01 4.63
287 288 3.667261 CGTGTTATATTTACGAGCGGAGG 59.333 47.826 0.00 0.00 40.01 4.30
288 289 4.614946 GTGTTATATTTACGAGCGGAGGT 58.385 43.478 0.00 0.00 46.54 3.85
289 290 5.560760 CGTGTTATATTTACGAGCGGAGGTA 60.561 44.000 0.00 0.00 39.88 3.08
290 291 5.855395 GTGTTATATTTACGAGCGGAGGTAG 59.145 44.000 0.00 0.00 39.88 3.18
291 292 5.532406 TGTTATATTTACGAGCGGAGGTAGT 59.468 40.000 0.00 0.00 46.95 2.73
292 293 6.710295 TGTTATATTTACGAGCGGAGGTAGTA 59.290 38.462 0.00 0.00 42.98 1.82
293 294 3.978718 ATTTACGAGCGGAGGTAGTAC 57.021 47.619 0.00 0.00 44.88 2.73
294 295 2.698855 TTACGAGCGGAGGTAGTACT 57.301 50.000 0.00 0.00 44.88 2.73
295 296 3.819564 TTACGAGCGGAGGTAGTACTA 57.180 47.619 0.00 0.00 44.88 1.82
296 297 2.237393 ACGAGCGGAGGTAGTACTAG 57.763 55.000 1.87 0.00 42.98 2.57
297 298 1.484240 ACGAGCGGAGGTAGTACTAGT 59.516 52.381 1.87 0.00 42.98 2.57
298 299 2.695666 ACGAGCGGAGGTAGTACTAGTA 59.304 50.000 1.87 0.00 42.98 1.82
299 300 3.133003 ACGAGCGGAGGTAGTACTAGTAA 59.867 47.826 3.61 0.00 42.98 2.24
300 301 3.492756 CGAGCGGAGGTAGTACTAGTAAC 59.507 52.174 3.61 0.00 39.88 2.50
301 302 4.702831 GAGCGGAGGTAGTACTAGTAACT 58.297 47.826 3.61 7.14 39.88 2.24
302 303 5.508153 CGAGCGGAGGTAGTACTAGTAACTA 60.508 48.000 3.61 6.20 39.88 2.24
303 304 6.240549 AGCGGAGGTAGTACTAGTAACTAA 57.759 41.667 3.61 0.00 35.08 2.24
304 305 6.052360 AGCGGAGGTAGTACTAGTAACTAAC 58.948 44.000 3.61 10.93 37.40 2.34
311 312 9.212593 AGGTAGTACTAGTAACTAACTCTAGCT 57.787 37.037 17.41 16.32 42.51 3.32
312 313 9.260002 GGTAGTACTAGTAACTAACTCTAGCTG 57.740 40.741 3.61 0.00 39.80 4.24
317 318 7.708998 ACTAGTAACTAACTCTAGCTGAATGC 58.291 38.462 0.00 0.00 39.80 3.56
318 319 6.531503 AGTAACTAACTCTAGCTGAATGCA 57.468 37.500 0.00 0.00 37.90 3.96
319 320 6.334202 AGTAACTAACTCTAGCTGAATGCAC 58.666 40.000 0.00 0.00 37.90 4.57
320 321 5.413309 AACTAACTCTAGCTGAATGCACT 57.587 39.130 0.00 0.00 45.94 4.40
321 322 4.753233 ACTAACTCTAGCTGAATGCACTG 58.247 43.478 0.00 0.00 45.94 3.66
322 323 2.687700 ACTCTAGCTGAATGCACTGG 57.312 50.000 0.00 0.00 45.94 4.00
323 324 2.182827 ACTCTAGCTGAATGCACTGGA 58.817 47.619 0.00 0.00 45.94 3.86
324 325 2.568956 ACTCTAGCTGAATGCACTGGAA 59.431 45.455 0.00 0.00 45.94 3.53
325 326 3.199508 ACTCTAGCTGAATGCACTGGAAT 59.800 43.478 0.00 0.00 45.94 3.01
326 327 4.197750 CTCTAGCTGAATGCACTGGAATT 58.802 43.478 0.00 0.00 45.94 2.17
327 328 5.104776 ACTCTAGCTGAATGCACTGGAATTA 60.105 40.000 0.00 0.00 45.94 1.40
328 329 5.744171 TCTAGCTGAATGCACTGGAATTAA 58.256 37.500 0.00 0.00 45.94 1.40
329 330 6.359804 TCTAGCTGAATGCACTGGAATTAAT 58.640 36.000 0.00 0.00 45.94 1.40
330 331 7.508687 TCTAGCTGAATGCACTGGAATTAATA 58.491 34.615 0.00 0.00 45.94 0.98
331 332 6.382869 AGCTGAATGCACTGGAATTAATAC 57.617 37.500 0.00 0.00 45.94 1.89
332 333 5.887598 AGCTGAATGCACTGGAATTAATACA 59.112 36.000 0.00 0.00 45.94 2.29
333 334 6.039047 AGCTGAATGCACTGGAATTAATACAG 59.961 38.462 15.00 15.00 45.94 2.74
334 335 6.183360 GCTGAATGCACTGGAATTAATACAGT 60.183 38.462 16.02 16.02 45.62 3.55
335 336 7.629222 GCTGAATGCACTGGAATTAATACAGTT 60.629 37.037 18.12 8.24 42.38 3.16
336 337 7.761409 TGAATGCACTGGAATTAATACAGTTC 58.239 34.615 18.12 15.27 42.38 3.01
337 338 5.794687 TGCACTGGAATTAATACAGTTCG 57.205 39.130 18.12 11.86 42.38 3.95
338 339 4.634004 TGCACTGGAATTAATACAGTTCGG 59.366 41.667 18.12 11.35 42.38 4.30
339 340 4.873827 GCACTGGAATTAATACAGTTCGGA 59.126 41.667 18.12 0.00 42.38 4.55
340 341 5.220605 GCACTGGAATTAATACAGTTCGGAC 60.221 44.000 18.12 0.00 42.38 4.79
341 342 5.293569 CACTGGAATTAATACAGTTCGGACC 59.706 44.000 18.12 0.00 42.38 4.46
342 343 5.189145 ACTGGAATTAATACAGTTCGGACCT 59.811 40.000 16.02 0.00 42.38 3.85
343 344 5.424757 TGGAATTAATACAGTTCGGACCTG 58.575 41.667 0.52 0.52 0.00 4.00
344 345 5.188163 TGGAATTAATACAGTTCGGACCTGA 59.812 40.000 9.70 0.00 0.00 3.86
345 346 5.522824 GGAATTAATACAGTTCGGACCTGAC 59.477 44.000 9.70 0.00 0.00 3.51
346 347 5.670792 ATTAATACAGTTCGGACCTGACA 57.329 39.130 9.70 0.00 0.00 3.58
347 348 5.670792 TTAATACAGTTCGGACCTGACAT 57.329 39.130 9.70 0.00 0.00 3.06
348 349 4.553330 AATACAGTTCGGACCTGACATT 57.447 40.909 9.70 5.63 0.00 2.71
349 350 5.670792 AATACAGTTCGGACCTGACATTA 57.329 39.130 9.70 0.00 0.00 1.90
350 351 3.594603 ACAGTTCGGACCTGACATTAG 57.405 47.619 9.70 0.00 0.00 1.73
351 352 2.271800 CAGTTCGGACCTGACATTAGC 58.728 52.381 0.00 0.00 0.00 3.09
352 353 2.093973 CAGTTCGGACCTGACATTAGCT 60.094 50.000 0.00 0.00 0.00 3.32
353 354 2.166664 AGTTCGGACCTGACATTAGCTC 59.833 50.000 0.00 0.00 0.00 4.09
354 355 2.145397 TCGGACCTGACATTAGCTCT 57.855 50.000 0.00 0.00 0.00 4.09
355 356 3.292492 TCGGACCTGACATTAGCTCTA 57.708 47.619 0.00 0.00 0.00 2.43
356 357 3.215151 TCGGACCTGACATTAGCTCTAG 58.785 50.000 0.00 0.00 0.00 2.43
357 358 2.952978 CGGACCTGACATTAGCTCTAGT 59.047 50.000 0.00 0.00 0.00 2.57
358 359 3.243234 CGGACCTGACATTAGCTCTAGTG 60.243 52.174 0.00 0.00 0.00 2.74
359 360 3.491792 GGACCTGACATTAGCTCTAGTGC 60.492 52.174 8.76 8.76 0.00 4.40
360 361 3.099905 ACCTGACATTAGCTCTAGTGCA 58.900 45.455 18.36 0.00 34.99 4.57
361 362 3.131933 ACCTGACATTAGCTCTAGTGCAG 59.868 47.826 18.36 7.98 32.49 4.41
362 363 3.131933 CCTGACATTAGCTCTAGTGCAGT 59.868 47.826 18.36 10.79 31.69 4.40
363 364 4.382470 CCTGACATTAGCTCTAGTGCAGTT 60.382 45.833 18.36 1.24 31.69 3.16
364 365 5.152623 TGACATTAGCTCTAGTGCAGTTT 57.847 39.130 18.36 0.89 34.99 2.66
365 366 6.280855 TGACATTAGCTCTAGTGCAGTTTA 57.719 37.500 18.36 0.00 34.99 2.01
366 367 6.333416 TGACATTAGCTCTAGTGCAGTTTAG 58.667 40.000 18.36 0.00 34.99 1.85
367 368 5.665459 ACATTAGCTCTAGTGCAGTTTAGG 58.335 41.667 18.36 4.41 34.99 2.69
368 369 5.187967 ACATTAGCTCTAGTGCAGTTTAGGT 59.812 40.000 18.36 6.08 34.99 3.08
369 370 5.740290 TTAGCTCTAGTGCAGTTTAGGTT 57.260 39.130 18.36 0.00 34.99 3.50
370 371 6.845758 TTAGCTCTAGTGCAGTTTAGGTTA 57.154 37.500 18.36 0.00 34.99 2.85
371 372 5.074584 AGCTCTAGTGCAGTTTAGGTTAC 57.925 43.478 18.36 0.00 34.99 2.50
372 373 4.773149 AGCTCTAGTGCAGTTTAGGTTACT 59.227 41.667 18.36 0.00 34.99 2.24
373 374 5.950549 AGCTCTAGTGCAGTTTAGGTTACTA 59.049 40.000 18.36 0.00 34.99 1.82
374 375 6.608002 AGCTCTAGTGCAGTTTAGGTTACTAT 59.392 38.462 18.36 0.00 34.99 2.12
375 376 6.919115 GCTCTAGTGCAGTTTAGGTTACTATC 59.081 42.308 11.82 0.00 0.00 2.08
376 377 7.416438 GCTCTAGTGCAGTTTAGGTTACTATCA 60.416 40.741 11.82 0.00 0.00 2.15
377 378 8.534954 TCTAGTGCAGTTTAGGTTACTATCAT 57.465 34.615 0.00 0.00 0.00 2.45
378 379 9.636789 TCTAGTGCAGTTTAGGTTACTATCATA 57.363 33.333 0.00 0.00 0.00 2.15
379 380 9.900710 CTAGTGCAGTTTAGGTTACTATCATAG 57.099 37.037 0.00 0.00 0.00 2.23
380 381 8.307582 AGTGCAGTTTAGGTTACTATCATAGT 57.692 34.615 2.09 2.09 42.68 2.12
381 382 8.759782 AGTGCAGTTTAGGTTACTATCATAGTT 58.240 33.333 1.69 0.00 40.14 2.24
382 383 9.379791 GTGCAGTTTAGGTTACTATCATAGTTT 57.620 33.333 1.69 0.00 40.14 2.66
383 384 9.953565 TGCAGTTTAGGTTACTATCATAGTTTT 57.046 29.630 1.69 0.00 40.14 2.43
410 411 3.887621 TGGACTATCCATATTAGCGGC 57.112 47.619 0.00 0.00 42.67 6.53
411 412 2.165641 TGGACTATCCATATTAGCGGCG 59.834 50.000 0.51 0.51 42.67 6.46
412 413 2.481449 GGACTATCCATATTAGCGGCGG 60.481 54.545 9.78 0.00 36.28 6.13
413 414 2.426024 GACTATCCATATTAGCGGCGGA 59.574 50.000 9.78 0.00 0.00 5.54
414 415 2.165845 ACTATCCATATTAGCGGCGGAC 59.834 50.000 9.78 0.00 0.00 4.79
415 416 0.249398 ATCCATATTAGCGGCGGACC 59.751 55.000 9.78 0.00 0.00 4.46
416 417 0.830444 TCCATATTAGCGGCGGACCT 60.830 55.000 9.78 0.00 0.00 3.85
417 418 0.389948 CCATATTAGCGGCGGACCTC 60.390 60.000 9.78 0.00 0.00 3.85
418 419 0.603569 CATATTAGCGGCGGACCTCT 59.396 55.000 9.78 0.00 34.60 3.69
419 420 1.000955 CATATTAGCGGCGGACCTCTT 59.999 52.381 9.78 0.00 31.87 2.85
420 421 0.672342 TATTAGCGGCGGACCTCTTC 59.328 55.000 9.78 0.00 31.87 2.87
421 422 1.043673 ATTAGCGGCGGACCTCTTCT 61.044 55.000 9.78 0.00 31.87 2.85
422 423 0.394762 TTAGCGGCGGACCTCTTCTA 60.395 55.000 9.78 0.00 31.87 2.10
423 424 0.394762 TAGCGGCGGACCTCTTCTAA 60.395 55.000 9.78 0.00 31.87 2.10
424 425 1.217244 GCGGCGGACCTCTTCTAAA 59.783 57.895 9.78 0.00 0.00 1.85
425 426 1.082679 GCGGCGGACCTCTTCTAAAC 61.083 60.000 9.78 0.00 0.00 2.01
426 427 0.245539 CGGCGGACCTCTTCTAAACA 59.754 55.000 0.00 0.00 0.00 2.83
427 428 1.723220 GGCGGACCTCTTCTAAACAC 58.277 55.000 0.00 0.00 0.00 3.32
428 429 1.675116 GGCGGACCTCTTCTAAACACC 60.675 57.143 0.00 0.00 0.00 4.16
429 430 1.675116 GCGGACCTCTTCTAAACACCC 60.675 57.143 0.00 0.00 0.00 4.61
430 431 1.900486 CGGACCTCTTCTAAACACCCT 59.100 52.381 0.00 0.00 0.00 4.34
431 432 2.353803 CGGACCTCTTCTAAACACCCTG 60.354 54.545 0.00 0.00 0.00 4.45
432 433 2.904434 GGACCTCTTCTAAACACCCTGA 59.096 50.000 0.00 0.00 0.00 3.86
433 434 3.306849 GGACCTCTTCTAAACACCCTGAC 60.307 52.174 0.00 0.00 0.00 3.51
434 435 3.314693 ACCTCTTCTAAACACCCTGACA 58.685 45.455 0.00 0.00 0.00 3.58
435 436 3.910627 ACCTCTTCTAAACACCCTGACAT 59.089 43.478 0.00 0.00 0.00 3.06
436 437 4.256920 CCTCTTCTAAACACCCTGACATG 58.743 47.826 0.00 0.00 0.00 3.21
437 438 3.674997 TCTTCTAAACACCCTGACATGC 58.325 45.455 0.00 0.00 0.00 4.06
438 439 3.327757 TCTTCTAAACACCCTGACATGCT 59.672 43.478 0.00 0.00 0.00 3.79
439 440 4.530553 TCTTCTAAACACCCTGACATGCTA 59.469 41.667 0.00 0.00 0.00 3.49
440 441 5.189736 TCTTCTAAACACCCTGACATGCTAT 59.810 40.000 0.00 0.00 0.00 2.97
441 442 6.382859 TCTTCTAAACACCCTGACATGCTATA 59.617 38.462 0.00 0.00 0.00 1.31
442 443 6.553953 TCTAAACACCCTGACATGCTATAA 57.446 37.500 0.00 0.00 0.00 0.98
443 444 6.346096 TCTAAACACCCTGACATGCTATAAC 58.654 40.000 0.00 0.00 0.00 1.89
444 445 3.179443 ACACCCTGACATGCTATAACG 57.821 47.619 0.00 0.00 0.00 3.18
445 446 2.158957 ACACCCTGACATGCTATAACGG 60.159 50.000 0.00 0.00 0.00 4.44
446 447 2.116238 ACCCTGACATGCTATAACGGT 58.884 47.619 0.00 0.00 0.00 4.83
447 448 2.158957 ACCCTGACATGCTATAACGGTG 60.159 50.000 0.00 0.00 0.00 4.94
448 449 1.867233 CCTGACATGCTATAACGGTGC 59.133 52.381 0.00 0.00 0.00 5.01
449 450 2.483714 CCTGACATGCTATAACGGTGCT 60.484 50.000 0.00 0.00 0.00 4.40
450 451 3.243737 CCTGACATGCTATAACGGTGCTA 60.244 47.826 0.00 0.00 0.00 3.49
451 452 4.560128 CTGACATGCTATAACGGTGCTAT 58.440 43.478 0.00 0.00 0.00 2.97
452 453 4.306600 TGACATGCTATAACGGTGCTATG 58.693 43.478 0.00 0.00 0.00 2.23
453 454 3.664107 ACATGCTATAACGGTGCTATGG 58.336 45.455 0.00 0.00 0.00 2.74
454 455 2.163818 TGCTATAACGGTGCTATGGC 57.836 50.000 0.00 0.00 34.72 4.40
455 456 1.068474 GCTATAACGGTGCTATGGCG 58.932 55.000 0.00 0.00 42.25 5.69
470 471 8.687824 GTGCTATGGCGCATTATTTAAAATAT 57.312 30.769 10.83 0.00 46.98 1.28
471 472 9.139174 GTGCTATGGCGCATTATTTAAAATATT 57.861 29.630 10.83 0.00 46.98 1.28
472 473 9.703892 TGCTATGGCGCATTATTTAAAATATTT 57.296 25.926 10.83 0.00 42.25 1.40
489 490 8.986477 AAAATATTTTGTTCATGCTACAGGAC 57.014 30.769 12.62 0.00 0.00 3.85
490 491 6.699575 ATATTTTGTTCATGCTACAGGACC 57.300 37.500 0.00 0.00 0.00 4.46
491 492 3.788227 TTTGTTCATGCTACAGGACCT 57.212 42.857 0.00 0.00 0.00 3.85
492 493 3.334583 TTGTTCATGCTACAGGACCTC 57.665 47.619 0.00 0.00 0.00 3.85
493 494 2.540383 TGTTCATGCTACAGGACCTCT 58.460 47.619 0.00 0.00 0.00 3.69
494 495 2.497675 TGTTCATGCTACAGGACCTCTC 59.502 50.000 0.00 0.00 0.00 3.20
495 496 2.763448 GTTCATGCTACAGGACCTCTCT 59.237 50.000 0.00 0.00 0.00 3.10
496 497 3.107402 TCATGCTACAGGACCTCTCTT 57.893 47.619 0.00 0.00 0.00 2.85
497 498 4.251103 TCATGCTACAGGACCTCTCTTA 57.749 45.455 0.00 0.00 0.00 2.10
498 499 3.954904 TCATGCTACAGGACCTCTCTTAC 59.045 47.826 0.00 0.00 0.00 2.34
499 500 3.741245 TGCTACAGGACCTCTCTTACT 57.259 47.619 0.00 0.00 0.00 2.24
500 501 4.857130 TGCTACAGGACCTCTCTTACTA 57.143 45.455 0.00 0.00 0.00 1.82
501 502 4.525024 TGCTACAGGACCTCTCTTACTAC 58.475 47.826 0.00 0.00 0.00 2.73
502 503 4.018688 TGCTACAGGACCTCTCTTACTACA 60.019 45.833 0.00 0.00 0.00 2.74
503 504 4.577283 GCTACAGGACCTCTCTTACTACAG 59.423 50.000 0.00 0.00 0.00 2.74
504 505 3.970842 ACAGGACCTCTCTTACTACAGG 58.029 50.000 0.00 0.00 0.00 4.00
505 506 3.592427 ACAGGACCTCTCTTACTACAGGA 59.408 47.826 0.00 0.00 0.00 3.86
506 507 3.949113 CAGGACCTCTCTTACTACAGGAC 59.051 52.174 0.00 0.00 0.00 3.85
507 508 3.053470 AGGACCTCTCTTACTACAGGACC 60.053 52.174 0.00 0.00 40.14 4.46
508 509 3.053470 GGACCTCTCTTACTACAGGACCT 60.053 52.174 0.00 0.00 37.73 3.85
509 510 4.201657 GACCTCTCTTACTACAGGACCTC 58.798 52.174 0.00 0.00 0.00 3.85
510 511 3.853784 ACCTCTCTTACTACAGGACCTCT 59.146 47.826 0.00 0.00 0.00 3.69
511 512 4.080186 ACCTCTCTTACTACAGGACCTCTC 60.080 50.000 0.00 0.00 0.00 3.20
512 513 4.165372 CCTCTCTTACTACAGGACCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
513 514 5.339695 CCTCTCTTACTACAGGACCTCTCTT 60.340 48.000 0.00 0.00 0.00 2.85
514 515 6.126710 CCTCTCTTACTACAGGACCTCTCTTA 60.127 46.154 0.00 0.00 0.00 2.10
515 516 7.268212 TCTCTTACTACAGGACCTCTCTTAA 57.732 40.000 0.00 0.00 0.00 1.85
516 517 7.340256 TCTCTTACTACAGGACCTCTCTTAAG 58.660 42.308 0.00 0.00 0.00 1.85
517 518 5.887035 TCTTACTACAGGACCTCTCTTAAGC 59.113 44.000 0.00 0.00 0.00 3.09
518 519 3.018149 ACTACAGGACCTCTCTTAAGCG 58.982 50.000 0.00 0.00 0.00 4.68
519 520 0.533032 ACAGGACCTCTCTTAAGCGC 59.467 55.000 0.00 0.00 0.00 5.92
520 521 0.820871 CAGGACCTCTCTTAAGCGCT 59.179 55.000 2.64 2.64 0.00 5.92
521 522 2.025155 CAGGACCTCTCTTAAGCGCTA 58.975 52.381 12.05 0.00 0.00 4.26
522 523 2.625790 CAGGACCTCTCTTAAGCGCTAT 59.374 50.000 12.05 3.52 0.00 2.97
523 524 3.821600 CAGGACCTCTCTTAAGCGCTATA 59.178 47.826 12.05 2.37 0.00 1.31
524 525 4.076394 AGGACCTCTCTTAAGCGCTATAG 58.924 47.826 12.05 11.64 0.00 1.31
525 526 3.366577 GGACCTCTCTTAAGCGCTATAGC 60.367 52.174 12.05 15.09 37.78 2.97
538 539 3.627732 GCTATAGCGTACTTCAGCAGA 57.372 47.619 9.40 0.00 33.73 4.26
539 540 3.560503 GCTATAGCGTACTTCAGCAGAG 58.439 50.000 9.40 0.00 33.73 3.35
540 541 2.500509 ATAGCGTACTTCAGCAGAGC 57.499 50.000 0.00 0.00 35.48 4.09
541 542 1.464734 TAGCGTACTTCAGCAGAGCT 58.535 50.000 0.00 0.00 40.77 4.09
542 543 1.464734 AGCGTACTTCAGCAGAGCTA 58.535 50.000 0.00 0.00 36.40 3.32
543 544 2.028130 AGCGTACTTCAGCAGAGCTAT 58.972 47.619 0.00 0.00 36.40 2.97
544 545 2.428890 AGCGTACTTCAGCAGAGCTATT 59.571 45.455 0.00 0.00 36.40 1.73
545 546 3.118956 AGCGTACTTCAGCAGAGCTATTT 60.119 43.478 0.00 0.00 36.40 1.40
546 547 4.098044 AGCGTACTTCAGCAGAGCTATTTA 59.902 41.667 0.00 0.00 36.40 1.40
547 548 4.804139 GCGTACTTCAGCAGAGCTATTTAA 59.196 41.667 0.00 0.00 36.40 1.52
548 549 5.291128 GCGTACTTCAGCAGAGCTATTTAAA 59.709 40.000 0.00 0.00 36.40 1.52
549 550 6.183360 GCGTACTTCAGCAGAGCTATTTAAAA 60.183 38.462 0.00 0.00 36.40 1.52
550 551 7.174082 CGTACTTCAGCAGAGCTATTTAAAAC 58.826 38.462 0.00 0.00 36.40 2.43
551 552 6.502136 ACTTCAGCAGAGCTATTTAAAACC 57.498 37.500 0.00 0.00 36.40 3.27
552 553 6.003950 ACTTCAGCAGAGCTATTTAAAACCA 58.996 36.000 0.00 0.00 36.40 3.67
553 554 6.660949 ACTTCAGCAGAGCTATTTAAAACCAT 59.339 34.615 0.00 0.00 36.40 3.55
564 565 9.574516 AGCTATTTAAAACCATGGTTCCTATAG 57.425 33.333 29.91 27.29 37.35 1.31
581 587 5.537674 TCCTATAGACCGGAAATTCCTGTAC 59.462 44.000 9.46 4.02 33.97 2.90
587 593 2.199236 CGGAAATTCCTGTACGTAGCC 58.801 52.381 10.64 0.00 33.30 3.93
603 609 3.114616 CCGCCGTTCAGCAGTCAG 61.115 66.667 0.00 0.00 0.00 3.51
718 727 8.684386 TGACCATAACAAAAGTAGTTTCATGA 57.316 30.769 0.00 0.00 0.00 3.07
719 728 8.564574 TGACCATAACAAAAGTAGTTTCATGAC 58.435 33.333 0.00 0.00 0.00 3.06
720 729 8.691661 ACCATAACAAAAGTAGTTTCATGACT 57.308 30.769 0.00 0.00 0.00 3.41
721 730 9.131791 ACCATAACAAAAGTAGTTTCATGACTT 57.868 29.630 0.00 0.00 34.92 3.01
789 812 2.037121 TGCTGCCTATAAATAGCTCGCA 59.963 45.455 0.00 0.00 37.10 5.10
793 816 3.007940 TGCCTATAAATAGCTCGCACCAT 59.992 43.478 0.00 0.00 0.00 3.55
799 822 0.179045 ATAGCTCGCACCATTGTCCC 60.179 55.000 0.00 0.00 0.00 4.46
822 845 5.461737 CCAACAAATCGTACAGCACAAAAAT 59.538 36.000 0.00 0.00 0.00 1.82
845 868 1.987704 AAGCAACGCACGCAACAAGA 61.988 50.000 0.00 0.00 0.00 3.02
881 904 1.878975 GCTCGAGCTAACCTTCGCC 60.879 63.158 29.88 0.00 38.21 5.54
888 911 1.234615 GCTAACCTTCGCCACTTGCA 61.235 55.000 0.00 0.00 41.33 4.08
889 912 0.798776 CTAACCTTCGCCACTTGCAG 59.201 55.000 0.00 0.00 41.33 4.41
904 927 4.215827 CACTTGCAGCAATCTCTCTCTTTT 59.784 41.667 8.67 0.00 0.00 2.27
908 931 5.068636 TGCAGCAATCTCTCTCTTTTTCTT 58.931 37.500 0.00 0.00 0.00 2.52
918 941 5.465935 TCTCTCTTTTTCTTTCTCTCTCGC 58.534 41.667 0.00 0.00 0.00 5.03
919 942 4.561105 TCTCTTTTTCTTTCTCTCTCGCC 58.439 43.478 0.00 0.00 0.00 5.54
922 945 3.594603 TTTTCTTTCTCTCTCGCCGAT 57.405 42.857 0.00 0.00 0.00 4.18
923 946 2.853731 TTCTTTCTCTCTCGCCGATC 57.146 50.000 0.00 0.00 0.00 3.69
924 947 1.751437 TCTTTCTCTCTCGCCGATCA 58.249 50.000 0.00 0.00 0.00 2.92
925 948 2.092323 TCTTTCTCTCTCGCCGATCAA 58.908 47.619 0.00 0.00 0.00 2.57
926 949 2.492088 TCTTTCTCTCTCGCCGATCAAA 59.508 45.455 0.00 0.00 0.00 2.69
927 950 2.279582 TTCTCTCTCGCCGATCAAAC 57.720 50.000 0.00 0.00 0.00 2.93
928 951 1.464734 TCTCTCTCGCCGATCAAACT 58.535 50.000 0.00 0.00 0.00 2.66
929 952 1.819288 TCTCTCTCGCCGATCAAACTT 59.181 47.619 0.00 0.00 0.00 2.66
930 953 1.923204 CTCTCTCGCCGATCAAACTTG 59.077 52.381 0.00 0.00 0.00 3.16
931 954 1.002366 CTCTCGCCGATCAAACTTGG 58.998 55.000 0.00 0.00 0.00 3.61
1308 1341 2.879462 GCAACCGTAGACGCCGAG 60.879 66.667 0.00 0.00 38.18 4.63
1992 2025 2.990479 GAGGTGGCGAAGGTGGAT 59.010 61.111 0.00 0.00 0.00 3.41
2505 2553 3.421919 TTTACTACCAAAAGGACCCGG 57.578 47.619 0.00 0.00 0.00 5.73
2512 2560 1.830847 AAAAGGACCCGGGTGTTGC 60.831 57.895 36.01 17.30 0.00 4.17
2516 2564 3.656045 GACCCGGGTGTTGCAACG 61.656 66.667 36.01 12.28 0.00 4.10
2522 2570 1.966451 GGGTGTTGCAACGGGAGAG 60.966 63.158 23.79 0.00 0.00 3.20
2581 2630 2.445565 TGCTGCATCACCGAGATATC 57.554 50.000 0.00 0.00 34.43 1.63
2586 2635 2.562738 TGCATCACCGAGATATCCGATT 59.437 45.455 13.18 0.47 34.43 3.34
2607 2656 8.604890 CCGATTACTCTTTTTCTTATTGAGACC 58.395 37.037 0.00 0.00 33.02 3.85
2673 2790 6.471519 CAGTTACAAACATAGCCTAGACGTAC 59.528 42.308 0.00 0.00 0.00 3.67
2798 3255 7.015226 TGTAGACAATGTGCATGTATAAAGC 57.985 36.000 0.00 0.00 0.00 3.51
2878 3351 7.004555 TGGTGTCAGACATAGACTAACAAAT 57.995 36.000 6.51 0.00 36.94 2.32
3020 3498 5.426509 TGAGAGCCTTAAATCTTGAGGATCA 59.573 40.000 15.27 7.01 45.89 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.928264 TGATAGATTCGCAACATACTCCATG 59.072 40.000 0.00 0.00 40.78 3.66
6 7 6.101650 TGATAGATTCGCAACATACTCCAT 57.898 37.500 0.00 0.00 0.00 3.41
7 8 5.529581 TGATAGATTCGCAACATACTCCA 57.470 39.130 0.00 0.00 0.00 3.86
8 9 7.426929 AAATGATAGATTCGCAACATACTCC 57.573 36.000 0.00 0.00 0.00 3.85
9 10 8.551205 TCAAAATGATAGATTCGCAACATACTC 58.449 33.333 0.00 0.00 0.00 2.59
10 11 8.437360 TCAAAATGATAGATTCGCAACATACT 57.563 30.769 0.00 0.00 0.00 2.12
11 12 9.502145 TTTCAAAATGATAGATTCGCAACATAC 57.498 29.630 0.00 0.00 0.00 2.39
12 13 9.502145 GTTTCAAAATGATAGATTCGCAACATA 57.498 29.630 0.00 0.00 0.00 2.29
13 14 8.246180 AGTTTCAAAATGATAGATTCGCAACAT 58.754 29.630 0.00 0.00 0.00 2.71
14 15 7.592938 AGTTTCAAAATGATAGATTCGCAACA 58.407 30.769 0.00 0.00 0.00 3.33
15 16 8.452989 AAGTTTCAAAATGATAGATTCGCAAC 57.547 30.769 0.00 0.00 0.00 4.17
16 17 9.474920 AAAAGTTTCAAAATGATAGATTCGCAA 57.525 25.926 0.00 0.00 0.00 4.85
17 18 8.914654 CAAAAGTTTCAAAATGATAGATTCGCA 58.085 29.630 0.00 0.00 0.00 5.10
18 19 8.915654 ACAAAAGTTTCAAAATGATAGATTCGC 58.084 29.630 0.00 0.00 0.00 4.70
26 27 9.609950 CAACAACAACAAAAGTTTCAAAATGAT 57.390 25.926 0.00 0.00 0.00 2.45
27 28 7.589221 GCAACAACAACAAAAGTTTCAAAATGA 59.411 29.630 0.00 0.00 0.00 2.57
28 29 7.408080 CGCAACAACAACAAAAGTTTCAAAATG 60.408 33.333 0.00 0.00 0.00 2.32
29 30 6.576684 CGCAACAACAACAAAAGTTTCAAAAT 59.423 30.769 0.00 0.00 0.00 1.82
30 31 5.904080 CGCAACAACAACAAAAGTTTCAAAA 59.096 32.000 0.00 0.00 0.00 2.44
31 32 5.234329 TCGCAACAACAACAAAAGTTTCAAA 59.766 32.000 0.00 0.00 0.00 2.69
32 33 4.745125 TCGCAACAACAACAAAAGTTTCAA 59.255 33.333 0.00 0.00 0.00 2.69
33 34 4.299155 TCGCAACAACAACAAAAGTTTCA 58.701 34.783 0.00 0.00 0.00 2.69
34 35 4.894798 TCGCAACAACAACAAAAGTTTC 57.105 36.364 0.00 0.00 0.00 2.78
35 36 5.443955 CGATTCGCAACAACAACAAAAGTTT 60.444 36.000 0.00 0.00 0.00 2.66
36 37 4.031201 CGATTCGCAACAACAACAAAAGTT 59.969 37.500 0.00 0.00 0.00 2.66
37 38 3.545873 CGATTCGCAACAACAACAAAAGT 59.454 39.130 0.00 0.00 0.00 2.66
38 39 3.788694 TCGATTCGCAACAACAACAAAAG 59.211 39.130 0.00 0.00 0.00 2.27
39 40 3.759418 TCGATTCGCAACAACAACAAAA 58.241 36.364 0.00 0.00 0.00 2.44
40 41 3.406728 TCGATTCGCAACAACAACAAA 57.593 38.095 0.00 0.00 0.00 2.83
41 42 3.002759 TGATCGATTCGCAACAACAACAA 59.997 39.130 0.00 0.00 0.00 2.83
42 43 2.545946 TGATCGATTCGCAACAACAACA 59.454 40.909 0.00 0.00 0.00 3.33
43 44 3.181826 TGATCGATTCGCAACAACAAC 57.818 42.857 0.00 0.00 0.00 3.32
44 45 4.418013 AATGATCGATTCGCAACAACAA 57.582 36.364 0.00 0.00 0.00 2.83
45 46 4.418013 AAATGATCGATTCGCAACAACA 57.582 36.364 0.00 0.00 0.00 3.33
46 47 4.851014 TCAAAATGATCGATTCGCAACAAC 59.149 37.500 0.00 0.00 0.00 3.32
47 48 5.040715 TCAAAATGATCGATTCGCAACAA 57.959 34.783 0.00 0.00 0.00 2.83
48 49 4.676849 TCAAAATGATCGATTCGCAACA 57.323 36.364 0.00 2.00 0.00 3.33
49 50 5.569059 AGTTTCAAAATGATCGATTCGCAAC 59.431 36.000 0.00 0.00 0.00 4.17
50 51 5.698832 AGTTTCAAAATGATCGATTCGCAA 58.301 33.333 0.00 0.00 0.00 4.85
51 52 5.106752 TGAGTTTCAAAATGATCGATTCGCA 60.107 36.000 0.00 0.00 0.00 5.10
52 53 5.225949 GTGAGTTTCAAAATGATCGATTCGC 59.774 40.000 0.00 0.00 0.00 4.70
53 54 5.445955 CGTGAGTTTCAAAATGATCGATTCG 59.554 40.000 0.00 0.00 0.00 3.34
54 55 6.247165 CACGTGAGTTTCAAAATGATCGATTC 59.753 38.462 10.90 0.00 46.40 2.52
55 56 6.079763 CACGTGAGTTTCAAAATGATCGATT 58.920 36.000 10.90 0.00 46.40 3.34
56 57 5.179368 ACACGTGAGTTTCAAAATGATCGAT 59.821 36.000 25.01 0.00 46.40 3.59
57 58 4.509970 ACACGTGAGTTTCAAAATGATCGA 59.490 37.500 25.01 0.00 46.40 3.59
58 59 4.772434 ACACGTGAGTTTCAAAATGATCG 58.228 39.130 25.01 0.00 46.40 3.69
59 60 6.077838 GGTACACGTGAGTTTCAAAATGATC 58.922 40.000 25.01 0.00 46.40 2.92
60 61 5.529430 TGGTACACGTGAGTTTCAAAATGAT 59.471 36.000 25.01 0.00 46.40 2.45
61 62 4.876679 TGGTACACGTGAGTTTCAAAATGA 59.123 37.500 25.01 0.00 46.40 2.57
62 63 5.007234 TCTGGTACACGTGAGTTTCAAAATG 59.993 40.000 25.01 1.99 46.40 2.32
63 64 5.007332 GTCTGGTACACGTGAGTTTCAAAAT 59.993 40.000 25.01 0.00 46.40 1.82
64 65 4.330620 GTCTGGTACACGTGAGTTTCAAAA 59.669 41.667 25.01 2.01 46.40 2.44
65 66 3.866910 GTCTGGTACACGTGAGTTTCAAA 59.133 43.478 25.01 0.00 46.40 2.69
66 67 3.119065 TGTCTGGTACACGTGAGTTTCAA 60.119 43.478 25.01 0.00 46.40 2.69
67 68 2.427812 TGTCTGGTACACGTGAGTTTCA 59.572 45.455 25.01 11.42 46.40 2.69
68 69 3.050619 CTGTCTGGTACACGTGAGTTTC 58.949 50.000 25.01 7.32 46.40 2.78
69 70 2.691526 TCTGTCTGGTACACGTGAGTTT 59.308 45.455 25.01 1.30 46.40 2.66
70 71 2.304092 TCTGTCTGGTACACGTGAGTT 58.696 47.619 25.01 1.74 46.40 3.01
72 73 4.696899 TTATCTGTCTGGTACACGTGAG 57.303 45.455 25.01 9.28 33.45 3.51
73 74 4.278919 TGTTTATCTGTCTGGTACACGTGA 59.721 41.667 25.01 2.68 33.45 4.35
74 75 4.552355 TGTTTATCTGTCTGGTACACGTG 58.448 43.478 15.48 15.48 33.45 4.49
75 76 4.859304 TGTTTATCTGTCTGGTACACGT 57.141 40.909 0.00 0.00 33.45 4.49
76 77 4.566759 CCATGTTTATCTGTCTGGTACACG 59.433 45.833 0.00 0.00 33.45 4.49
77 78 5.730550 TCCATGTTTATCTGTCTGGTACAC 58.269 41.667 0.00 0.00 33.45 2.90
78 79 5.483937 ACTCCATGTTTATCTGTCTGGTACA 59.516 40.000 0.00 0.00 36.42 2.90
79 80 5.978814 ACTCCATGTTTATCTGTCTGGTAC 58.021 41.667 0.00 0.00 0.00 3.34
80 81 6.183360 CGTACTCCATGTTTATCTGTCTGGTA 60.183 42.308 0.00 0.00 0.00 3.25
81 82 5.394224 CGTACTCCATGTTTATCTGTCTGGT 60.394 44.000 0.00 0.00 0.00 4.00
82 83 5.043903 CGTACTCCATGTTTATCTGTCTGG 58.956 45.833 0.00 0.00 0.00 3.86
83 84 5.651530 ACGTACTCCATGTTTATCTGTCTG 58.348 41.667 0.00 0.00 0.00 3.51
84 85 5.916661 ACGTACTCCATGTTTATCTGTCT 57.083 39.130 0.00 0.00 0.00 3.41
85 86 5.867716 ACAACGTACTCCATGTTTATCTGTC 59.132 40.000 0.00 0.00 33.96 3.51
86 87 5.790593 ACAACGTACTCCATGTTTATCTGT 58.209 37.500 0.00 0.00 33.96 3.41
87 88 5.291128 GGACAACGTACTCCATGTTTATCTG 59.709 44.000 6.56 0.00 33.96 2.90
88 89 5.187186 AGGACAACGTACTCCATGTTTATCT 59.813 40.000 12.71 0.00 33.96 1.98
89 90 5.416947 AGGACAACGTACTCCATGTTTATC 58.583 41.667 12.71 0.00 33.96 1.75
90 91 5.416271 AGGACAACGTACTCCATGTTTAT 57.584 39.130 12.71 0.00 33.96 1.40
91 92 4.877378 AGGACAACGTACTCCATGTTTA 57.123 40.909 12.71 0.00 33.96 2.01
92 93 3.764237 AGGACAACGTACTCCATGTTT 57.236 42.857 12.71 0.00 33.96 2.83
93 94 4.877378 TTAGGACAACGTACTCCATGTT 57.123 40.909 12.71 0.00 36.79 2.71
94 95 4.039488 TGTTTAGGACAACGTACTCCATGT 59.961 41.667 12.71 1.29 34.69 3.21
95 96 4.387862 GTGTTTAGGACAACGTACTCCATG 59.612 45.833 12.71 0.00 40.65 3.66
96 97 4.039488 TGTGTTTAGGACAACGTACTCCAT 59.961 41.667 12.71 2.72 40.65 3.41
97 98 3.384146 TGTGTTTAGGACAACGTACTCCA 59.616 43.478 12.71 0.00 40.65 3.86
98 99 3.981211 TGTGTTTAGGACAACGTACTCC 58.019 45.455 3.63 3.63 40.65 3.85
99 100 7.823149 AATATGTGTTTAGGACAACGTACTC 57.177 36.000 0.00 0.00 40.65 2.59
100 101 7.761249 GGTAATATGTGTTTAGGACAACGTACT 59.239 37.037 0.00 0.00 40.65 2.73
101 102 7.761249 AGGTAATATGTGTTTAGGACAACGTAC 59.239 37.037 0.00 0.00 40.65 3.67
102 103 7.839907 AGGTAATATGTGTTTAGGACAACGTA 58.160 34.615 0.00 0.00 40.65 3.57
103 104 6.704310 AGGTAATATGTGTTTAGGACAACGT 58.296 36.000 0.00 0.00 40.65 3.99
104 105 6.257193 GGAGGTAATATGTGTTTAGGACAACG 59.743 42.308 0.00 0.00 40.65 4.10
105 106 6.257193 CGGAGGTAATATGTGTTTAGGACAAC 59.743 42.308 0.00 0.00 40.65 3.32
106 107 6.342906 CGGAGGTAATATGTGTTTAGGACAA 58.657 40.000 0.00 0.00 40.65 3.18
107 108 5.682990 GCGGAGGTAATATGTGTTTAGGACA 60.683 44.000 0.00 0.00 35.42 4.02
108 109 4.748600 GCGGAGGTAATATGTGTTTAGGAC 59.251 45.833 0.00 0.00 0.00 3.85
109 110 4.406326 TGCGGAGGTAATATGTGTTTAGGA 59.594 41.667 0.00 0.00 0.00 2.94
110 111 4.510340 GTGCGGAGGTAATATGTGTTTAGG 59.490 45.833 0.00 0.00 0.00 2.69
111 112 4.510340 GGTGCGGAGGTAATATGTGTTTAG 59.490 45.833 0.00 0.00 0.00 1.85
112 113 4.444536 GGTGCGGAGGTAATATGTGTTTA 58.555 43.478 0.00 0.00 0.00 2.01
113 114 3.275999 GGTGCGGAGGTAATATGTGTTT 58.724 45.455 0.00 0.00 0.00 2.83
114 115 2.740580 CGGTGCGGAGGTAATATGTGTT 60.741 50.000 0.00 0.00 0.00 3.32
115 116 1.202486 CGGTGCGGAGGTAATATGTGT 60.202 52.381 0.00 0.00 0.00 3.72
116 117 1.067974 TCGGTGCGGAGGTAATATGTG 59.932 52.381 0.00 0.00 0.00 3.21
117 118 1.405872 TCGGTGCGGAGGTAATATGT 58.594 50.000 0.00 0.00 0.00 2.29
118 119 2.736721 CAATCGGTGCGGAGGTAATATG 59.263 50.000 0.00 0.00 0.00 1.78
119 120 2.631062 TCAATCGGTGCGGAGGTAATAT 59.369 45.455 0.00 0.00 0.00 1.28
120 121 2.033372 TCAATCGGTGCGGAGGTAATA 58.967 47.619 0.00 0.00 0.00 0.98
121 122 0.828022 TCAATCGGTGCGGAGGTAAT 59.172 50.000 0.00 0.00 0.00 1.89
122 123 0.609151 TTCAATCGGTGCGGAGGTAA 59.391 50.000 0.00 0.00 0.00 2.85
123 124 0.108520 GTTCAATCGGTGCGGAGGTA 60.109 55.000 0.00 0.00 0.00 3.08
124 125 1.375523 GTTCAATCGGTGCGGAGGT 60.376 57.895 0.00 0.00 0.00 3.85
125 126 1.079127 AGTTCAATCGGTGCGGAGG 60.079 57.895 0.00 0.00 0.00 4.30
126 127 1.970917 GCAGTTCAATCGGTGCGGAG 61.971 60.000 0.00 0.00 0.00 4.63
127 128 2.032634 GCAGTTCAATCGGTGCGGA 61.033 57.895 0.00 0.00 0.00 5.54
128 129 1.851021 TTGCAGTTCAATCGGTGCGG 61.851 55.000 0.00 0.00 38.84 5.69
129 130 0.040514 TTTGCAGTTCAATCGGTGCG 60.041 50.000 0.00 0.00 38.84 5.34
130 131 2.132740 TTTTGCAGTTCAATCGGTGC 57.867 45.000 0.00 0.00 34.12 5.01
131 132 4.050553 ACATTTTTGCAGTTCAATCGGTG 58.949 39.130 0.00 0.00 34.12 4.94
132 133 4.050553 CACATTTTTGCAGTTCAATCGGT 58.949 39.130 0.00 0.00 34.12 4.69
133 134 4.050553 ACACATTTTTGCAGTTCAATCGG 58.949 39.130 0.00 0.00 34.12 4.18
134 135 4.977963 AGACACATTTTTGCAGTTCAATCG 59.022 37.500 0.00 0.00 34.12 3.34
135 136 6.833342 AAGACACATTTTTGCAGTTCAATC 57.167 33.333 0.00 0.00 34.12 2.67
137 138 9.979578 AATATAAGACACATTTTTGCAGTTCAA 57.020 25.926 0.00 0.00 0.00 2.69
138 139 9.979578 AAATATAAGACACATTTTTGCAGTTCA 57.020 25.926 0.00 0.00 0.00 3.18
141 142 9.979578 TCAAAATATAAGACACATTTTTGCAGT 57.020 25.926 0.00 0.00 35.24 4.40
177 178 9.129532 GTAGGACAAAGTATGTACATAGGTACT 57.870 37.037 15.93 17.46 46.19 2.73
178 179 9.129532 AGTAGGACAAAGTATGTACATAGGTAC 57.870 37.037 15.93 10.70 46.19 3.34
180 181 9.705103 TTAGTAGGACAAAGTATGTACATAGGT 57.295 33.333 15.93 11.48 46.19 3.08
181 182 9.962783 GTTAGTAGGACAAAGTATGTACATAGG 57.037 37.037 15.93 8.62 46.19 2.57
185 186 9.745018 AGTAGTTAGTAGGACAAAGTATGTACA 57.255 33.333 0.00 0.00 46.19 2.90
187 188 9.401058 GGAGTAGTTAGTAGGACAAAGTATGTA 57.599 37.037 0.00 0.00 44.12 2.29
189 190 7.560626 AGGGAGTAGTTAGTAGGACAAAGTATG 59.439 40.741 0.00 0.00 0.00 2.39
190 191 7.650660 AGGGAGTAGTTAGTAGGACAAAGTAT 58.349 38.462 0.00 0.00 0.00 2.12
191 192 7.037342 AGGGAGTAGTTAGTAGGACAAAGTA 57.963 40.000 0.00 0.00 0.00 2.24
192 193 5.901598 AGGGAGTAGTTAGTAGGACAAAGT 58.098 41.667 0.00 0.00 0.00 2.66
193 194 5.360429 GGAGGGAGTAGTTAGTAGGACAAAG 59.640 48.000 0.00 0.00 0.00 2.77
194 195 5.222400 TGGAGGGAGTAGTTAGTAGGACAAA 60.222 44.000 0.00 0.00 0.00 2.83
195 196 4.293102 TGGAGGGAGTAGTTAGTAGGACAA 59.707 45.833 0.00 0.00 0.00 3.18
196 197 3.854389 TGGAGGGAGTAGTTAGTAGGACA 59.146 47.826 0.00 0.00 0.00 4.02
197 198 4.516652 TGGAGGGAGTAGTTAGTAGGAC 57.483 50.000 0.00 0.00 0.00 3.85
198 199 5.745988 AATGGAGGGAGTAGTTAGTAGGA 57.254 43.478 0.00 0.00 0.00 2.94
199 200 6.137559 AGAAATGGAGGGAGTAGTTAGTAGG 58.862 44.000 0.00 0.00 0.00 3.18
200 201 8.763984 TTAGAAATGGAGGGAGTAGTTAGTAG 57.236 38.462 0.00 0.00 0.00 2.57
201 202 9.725206 ATTTAGAAATGGAGGGAGTAGTTAGTA 57.275 33.333 0.00 0.00 0.00 1.82
202 203 8.625467 ATTTAGAAATGGAGGGAGTAGTTAGT 57.375 34.615 0.00 0.00 0.00 2.24
209 210 8.314751 CGACATATATTTAGAAATGGAGGGAGT 58.685 37.037 0.00 0.00 0.00 3.85
210 211 8.314751 ACGACATATATTTAGAAATGGAGGGAG 58.685 37.037 0.00 0.00 0.00 4.30
211 212 8.202461 ACGACATATATTTAGAAATGGAGGGA 57.798 34.615 0.00 0.00 0.00 4.20
212 213 8.848474 AACGACATATATTTAGAAATGGAGGG 57.152 34.615 0.00 0.00 0.00 4.30
228 229 9.221933 TCAATTTGTACTACCAAAACGACATAT 57.778 29.630 0.00 0.00 37.81 1.78
229 230 8.604640 TCAATTTGTACTACCAAAACGACATA 57.395 30.769 0.00 0.00 37.81 2.29
230 231 7.499321 TCAATTTGTACTACCAAAACGACAT 57.501 32.000 0.00 0.00 37.81 3.06
231 232 6.922247 TCAATTTGTACTACCAAAACGACA 57.078 33.333 0.00 0.00 37.81 4.35
232 233 7.803724 AGATCAATTTGTACTACCAAAACGAC 58.196 34.615 0.00 0.00 37.81 4.34
233 234 7.972832 AGATCAATTTGTACTACCAAAACGA 57.027 32.000 0.00 0.00 37.81 3.85
234 235 7.903431 GCTAGATCAATTTGTACTACCAAAACG 59.097 37.037 0.00 0.00 37.81 3.60
235 236 8.726988 TGCTAGATCAATTTGTACTACCAAAAC 58.273 33.333 0.00 0.00 37.81 2.43
236 237 8.856153 TGCTAGATCAATTTGTACTACCAAAA 57.144 30.769 0.00 0.00 37.81 2.44
237 238 8.856153 TTGCTAGATCAATTTGTACTACCAAA 57.144 30.769 0.00 0.00 38.58 3.28
238 239 8.856153 TTTGCTAGATCAATTTGTACTACCAA 57.144 30.769 0.00 3.74 0.00 3.67
239 240 8.726988 GTTTTGCTAGATCAATTTGTACTACCA 58.273 33.333 0.00 0.00 0.00 3.25
240 241 7.903431 CGTTTTGCTAGATCAATTTGTACTACC 59.097 37.037 0.00 0.00 0.00 3.18
241 242 8.440833 ACGTTTTGCTAGATCAATTTGTACTAC 58.559 33.333 0.00 0.00 0.00 2.73
242 243 8.440059 CACGTTTTGCTAGATCAATTTGTACTA 58.560 33.333 0.00 1.75 0.00 1.82
243 244 7.041372 ACACGTTTTGCTAGATCAATTTGTACT 60.041 33.333 0.00 0.69 0.00 2.73
244 245 7.075741 ACACGTTTTGCTAGATCAATTTGTAC 58.924 34.615 0.00 0.00 0.00 2.90
245 246 7.197071 ACACGTTTTGCTAGATCAATTTGTA 57.803 32.000 0.00 0.00 0.00 2.41
246 247 6.072112 ACACGTTTTGCTAGATCAATTTGT 57.928 33.333 0.00 0.00 0.00 2.83
247 248 6.991485 AACACGTTTTGCTAGATCAATTTG 57.009 33.333 0.00 0.00 0.00 2.32
253 254 9.564041 CGTAAATATAACACGTTTTGCTAGATC 57.436 33.333 0.00 0.00 0.00 2.75
254 255 9.304731 TCGTAAATATAACACGTTTTGCTAGAT 57.695 29.630 0.00 0.00 37.02 1.98
255 256 8.686397 TCGTAAATATAACACGTTTTGCTAGA 57.314 30.769 0.00 0.00 37.02 2.43
256 257 7.578024 GCTCGTAAATATAACACGTTTTGCTAG 59.422 37.037 0.00 0.00 37.02 3.42
257 258 7.393327 GCTCGTAAATATAACACGTTTTGCTA 58.607 34.615 0.00 0.00 37.02 3.49
258 259 6.245724 GCTCGTAAATATAACACGTTTTGCT 58.754 36.000 0.00 0.00 37.02 3.91
259 260 5.166583 CGCTCGTAAATATAACACGTTTTGC 59.833 40.000 0.00 0.00 37.02 3.68
260 261 5.669430 CCGCTCGTAAATATAACACGTTTTG 59.331 40.000 0.00 0.00 37.02 2.44
261 262 5.576384 TCCGCTCGTAAATATAACACGTTTT 59.424 36.000 0.00 0.00 37.02 2.43
262 263 5.101628 TCCGCTCGTAAATATAACACGTTT 58.898 37.500 0.00 0.00 37.02 3.60
263 264 4.671377 TCCGCTCGTAAATATAACACGTT 58.329 39.130 0.00 0.00 37.02 3.99
264 265 4.285292 CTCCGCTCGTAAATATAACACGT 58.715 43.478 0.00 0.00 37.02 4.49
265 266 3.667261 CCTCCGCTCGTAAATATAACACG 59.333 47.826 0.00 0.00 37.03 4.49
266 267 4.614946 ACCTCCGCTCGTAAATATAACAC 58.385 43.478 0.00 0.00 0.00 3.32
267 268 4.924305 ACCTCCGCTCGTAAATATAACA 57.076 40.909 0.00 0.00 0.00 2.41
268 269 6.006759 ACTACCTCCGCTCGTAAATATAAC 57.993 41.667 0.00 0.00 0.00 1.89
269 270 6.936900 AGTACTACCTCCGCTCGTAAATATAA 59.063 38.462 0.00 0.00 0.00 0.98
270 271 6.467677 AGTACTACCTCCGCTCGTAAATATA 58.532 40.000 0.00 0.00 0.00 0.86
271 272 5.312079 AGTACTACCTCCGCTCGTAAATAT 58.688 41.667 0.00 0.00 0.00 1.28
272 273 4.708177 AGTACTACCTCCGCTCGTAAATA 58.292 43.478 0.00 0.00 0.00 1.40
273 274 3.549794 AGTACTACCTCCGCTCGTAAAT 58.450 45.455 0.00 0.00 0.00 1.40
274 275 2.991250 AGTACTACCTCCGCTCGTAAA 58.009 47.619 0.00 0.00 0.00 2.01
275 276 2.698855 AGTACTACCTCCGCTCGTAA 57.301 50.000 0.00 0.00 0.00 3.18
276 277 2.695666 ACTAGTACTACCTCCGCTCGTA 59.304 50.000 0.00 0.00 0.00 3.43
277 278 1.484240 ACTAGTACTACCTCCGCTCGT 59.516 52.381 0.00 0.00 0.00 4.18
278 279 2.237393 ACTAGTACTACCTCCGCTCG 57.763 55.000 0.00 0.00 0.00 5.03
279 280 4.702831 AGTTACTAGTACTACCTCCGCTC 58.297 47.826 0.91 0.00 0.00 5.03
280 281 4.769345 AGTTACTAGTACTACCTCCGCT 57.231 45.455 0.91 0.00 0.00 5.52
281 282 6.052360 AGTTAGTTACTAGTACTACCTCCGC 58.948 44.000 0.91 0.00 34.56 5.54
282 283 7.496747 AGAGTTAGTTACTAGTACTACCTCCG 58.503 42.308 20.56 0.00 37.98 4.63
283 284 9.981114 CTAGAGTTAGTTACTAGTACTACCTCC 57.019 40.741 20.56 11.40 37.98 4.30
284 285 9.476202 GCTAGAGTTAGTTACTAGTACTACCTC 57.524 40.741 18.62 18.62 37.70 3.85
285 286 9.212593 AGCTAGAGTTAGTTACTAGTACTACCT 57.787 37.037 0.91 5.82 37.17 3.08
286 287 9.260002 CAGCTAGAGTTAGTTACTAGTACTACC 57.740 40.741 0.91 1.26 37.17 3.18
291 292 8.838365 GCATTCAGCTAGAGTTAGTTACTAGTA 58.162 37.037 0.00 0.00 41.15 1.82
292 293 7.339721 TGCATTCAGCTAGAGTTAGTTACTAGT 59.660 37.037 0.00 0.00 45.94 2.57
293 294 7.646130 GTGCATTCAGCTAGAGTTAGTTACTAG 59.354 40.741 0.00 0.00 45.94 2.57
294 295 7.339721 AGTGCATTCAGCTAGAGTTAGTTACTA 59.660 37.037 0.00 0.00 45.94 1.82
295 296 6.153680 AGTGCATTCAGCTAGAGTTAGTTACT 59.846 38.462 0.00 0.00 45.94 2.24
296 297 6.254589 CAGTGCATTCAGCTAGAGTTAGTTAC 59.745 42.308 0.00 0.00 45.94 2.50
297 298 6.333416 CAGTGCATTCAGCTAGAGTTAGTTA 58.667 40.000 0.00 0.00 45.94 2.24
298 299 5.174395 CAGTGCATTCAGCTAGAGTTAGTT 58.826 41.667 0.00 0.00 45.94 2.24
299 300 4.382470 CCAGTGCATTCAGCTAGAGTTAGT 60.382 45.833 0.00 0.00 45.94 2.24
300 301 4.118410 CCAGTGCATTCAGCTAGAGTTAG 58.882 47.826 0.00 0.00 45.94 2.34
301 302 3.769300 TCCAGTGCATTCAGCTAGAGTTA 59.231 43.478 0.00 0.00 45.94 2.24
302 303 2.568956 TCCAGTGCATTCAGCTAGAGTT 59.431 45.455 0.00 0.00 45.94 3.01
303 304 2.182827 TCCAGTGCATTCAGCTAGAGT 58.817 47.619 0.00 0.00 45.94 3.24
304 305 2.975732 TCCAGTGCATTCAGCTAGAG 57.024 50.000 0.00 0.00 45.94 2.43
305 306 3.920231 ATTCCAGTGCATTCAGCTAGA 57.080 42.857 0.00 0.00 45.94 2.43
306 307 6.630444 ATTAATTCCAGTGCATTCAGCTAG 57.370 37.500 0.00 0.00 45.94 3.42
307 308 7.053498 TGTATTAATTCCAGTGCATTCAGCTA 58.947 34.615 0.00 0.00 45.94 3.32
308 309 5.887598 TGTATTAATTCCAGTGCATTCAGCT 59.112 36.000 0.00 0.00 45.94 4.24
309 310 6.135290 TGTATTAATTCCAGTGCATTCAGC 57.865 37.500 0.00 0.00 45.96 4.26
310 311 7.325660 ACTGTATTAATTCCAGTGCATTCAG 57.674 36.000 15.71 0.00 38.00 3.02
311 312 7.413988 CGAACTGTATTAATTCCAGTGCATTCA 60.414 37.037 18.78 0.00 39.29 2.57
312 313 6.907212 CGAACTGTATTAATTCCAGTGCATTC 59.093 38.462 18.78 12.76 39.29 2.67
313 314 6.183360 CCGAACTGTATTAATTCCAGTGCATT 60.183 38.462 18.78 7.63 39.29 3.56
314 315 5.296780 CCGAACTGTATTAATTCCAGTGCAT 59.703 40.000 18.78 7.88 39.29 3.96
315 316 4.634004 CCGAACTGTATTAATTCCAGTGCA 59.366 41.667 18.78 0.00 39.29 4.57
316 317 4.873827 TCCGAACTGTATTAATTCCAGTGC 59.126 41.667 16.67 14.66 39.29 4.40
317 318 5.293569 GGTCCGAACTGTATTAATTCCAGTG 59.706 44.000 16.67 8.68 39.29 3.66
318 319 5.189145 AGGTCCGAACTGTATTAATTCCAGT 59.811 40.000 12.33 12.33 41.01 4.00
319 320 5.523916 CAGGTCCGAACTGTATTAATTCCAG 59.476 44.000 5.17 11.33 0.00 3.86
320 321 5.188163 TCAGGTCCGAACTGTATTAATTCCA 59.812 40.000 13.21 0.00 37.25 3.53
321 322 5.522824 GTCAGGTCCGAACTGTATTAATTCC 59.477 44.000 13.21 0.00 37.25 3.01
322 323 6.103997 TGTCAGGTCCGAACTGTATTAATTC 58.896 40.000 13.21 0.00 37.25 2.17
323 324 6.045072 TGTCAGGTCCGAACTGTATTAATT 57.955 37.500 13.21 0.00 37.25 1.40
324 325 5.670792 TGTCAGGTCCGAACTGTATTAAT 57.329 39.130 13.21 0.00 37.25 1.40
325 326 5.670792 ATGTCAGGTCCGAACTGTATTAA 57.329 39.130 13.21 0.00 37.25 1.40
326 327 5.670792 AATGTCAGGTCCGAACTGTATTA 57.329 39.130 13.21 0.00 37.25 0.98
327 328 4.553330 AATGTCAGGTCCGAACTGTATT 57.447 40.909 13.21 11.77 37.25 1.89
328 329 4.441634 GCTAATGTCAGGTCCGAACTGTAT 60.442 45.833 13.21 6.71 37.25 2.29
329 330 3.119245 GCTAATGTCAGGTCCGAACTGTA 60.119 47.826 13.21 4.67 37.25 2.74
330 331 2.353803 GCTAATGTCAGGTCCGAACTGT 60.354 50.000 13.21 0.00 37.25 3.55
331 332 2.093973 AGCTAATGTCAGGTCCGAACTG 60.094 50.000 7.15 7.15 37.30 3.16
332 333 2.166664 GAGCTAATGTCAGGTCCGAACT 59.833 50.000 0.00 0.00 37.13 3.01
333 334 2.166664 AGAGCTAATGTCAGGTCCGAAC 59.833 50.000 0.00 0.00 42.74 3.95
334 335 2.457598 AGAGCTAATGTCAGGTCCGAA 58.542 47.619 0.00 0.00 42.74 4.30
335 336 2.145397 AGAGCTAATGTCAGGTCCGA 57.855 50.000 0.00 0.00 42.74 4.55
336 337 2.952978 ACTAGAGCTAATGTCAGGTCCG 59.047 50.000 0.00 0.00 42.74 4.79
337 338 3.491792 GCACTAGAGCTAATGTCAGGTCC 60.492 52.174 4.75 0.00 42.74 4.46
338 339 3.131223 TGCACTAGAGCTAATGTCAGGTC 59.869 47.826 13.47 0.00 42.20 3.85
339 340 3.099905 TGCACTAGAGCTAATGTCAGGT 58.900 45.455 13.47 0.00 34.99 4.00
340 341 3.131933 ACTGCACTAGAGCTAATGTCAGG 59.868 47.826 13.47 0.00 34.99 3.86
341 342 4.383850 ACTGCACTAGAGCTAATGTCAG 57.616 45.455 13.47 3.14 34.99 3.51
342 343 4.808414 AACTGCACTAGAGCTAATGTCA 57.192 40.909 13.47 0.00 34.99 3.58
343 344 5.751028 CCTAAACTGCACTAGAGCTAATGTC 59.249 44.000 13.47 0.00 34.99 3.06
344 345 5.187967 ACCTAAACTGCACTAGAGCTAATGT 59.812 40.000 13.47 4.66 34.99 2.71
345 346 5.665459 ACCTAAACTGCACTAGAGCTAATG 58.335 41.667 13.47 4.10 34.99 1.90
346 347 5.941555 ACCTAAACTGCACTAGAGCTAAT 57.058 39.130 13.47 0.50 34.99 1.73
347 348 5.740290 AACCTAAACTGCACTAGAGCTAA 57.260 39.130 13.47 0.00 34.99 3.09
348 349 5.950549 AGTAACCTAAACTGCACTAGAGCTA 59.049 40.000 13.47 0.00 34.99 3.32
349 350 4.773149 AGTAACCTAAACTGCACTAGAGCT 59.227 41.667 13.47 0.00 34.99 4.09
350 351 5.074584 AGTAACCTAAACTGCACTAGAGC 57.925 43.478 5.07 5.07 0.00 4.09
351 352 7.997482 TGATAGTAACCTAAACTGCACTAGAG 58.003 38.462 0.00 0.00 0.00 2.43
352 353 7.949690 TGATAGTAACCTAAACTGCACTAGA 57.050 36.000 0.00 0.00 0.00 2.43
353 354 9.900710 CTATGATAGTAACCTAAACTGCACTAG 57.099 37.037 0.00 0.00 0.00 2.57
354 355 9.417561 ACTATGATAGTAACCTAAACTGCACTA 57.582 33.333 2.71 0.00 37.23 2.74
355 356 8.307582 ACTATGATAGTAACCTAAACTGCACT 57.692 34.615 2.71 0.00 37.23 4.40
356 357 8.943909 AACTATGATAGTAACCTAAACTGCAC 57.056 34.615 5.41 0.00 38.26 4.57
357 358 9.953565 AAAACTATGATAGTAACCTAAACTGCA 57.046 29.630 5.41 0.00 38.26 4.41
391 392 2.481449 CCGCCGCTAATATGGATAGTCC 60.481 54.545 0.00 0.00 36.96 3.85
392 393 2.426024 TCCGCCGCTAATATGGATAGTC 59.574 50.000 0.00 0.00 0.00 2.59
393 394 2.165845 GTCCGCCGCTAATATGGATAGT 59.834 50.000 0.00 0.00 0.00 2.12
394 395 2.481449 GGTCCGCCGCTAATATGGATAG 60.481 54.545 0.00 0.00 0.00 2.08
395 396 1.479323 GGTCCGCCGCTAATATGGATA 59.521 52.381 0.00 0.00 0.00 2.59
396 397 0.249398 GGTCCGCCGCTAATATGGAT 59.751 55.000 0.00 0.00 0.00 3.41
397 398 0.830444 AGGTCCGCCGCTAATATGGA 60.830 55.000 0.00 0.00 40.50 3.41
398 399 0.389948 GAGGTCCGCCGCTAATATGG 60.390 60.000 0.00 0.00 40.50 2.74
399 400 0.603569 AGAGGTCCGCCGCTAATATG 59.396 55.000 0.00 0.00 43.27 1.78
400 401 1.272769 GAAGAGGTCCGCCGCTAATAT 59.727 52.381 0.00 0.00 44.34 1.28
401 402 0.672342 GAAGAGGTCCGCCGCTAATA 59.328 55.000 0.00 0.00 44.34 0.98
402 403 1.043673 AGAAGAGGTCCGCCGCTAAT 61.044 55.000 0.00 0.00 44.34 1.73
403 404 0.394762 TAGAAGAGGTCCGCCGCTAA 60.395 55.000 0.00 0.00 44.34 3.09
404 405 0.394762 TTAGAAGAGGTCCGCCGCTA 60.395 55.000 0.00 0.00 44.34 4.26
406 407 1.082679 GTTTAGAAGAGGTCCGCCGC 61.083 60.000 0.00 0.00 40.50 6.53
407 408 0.245539 TGTTTAGAAGAGGTCCGCCG 59.754 55.000 0.00 0.00 40.50 6.46
408 409 1.675116 GGTGTTTAGAAGAGGTCCGCC 60.675 57.143 0.00 0.00 0.00 6.13
409 410 1.675116 GGGTGTTTAGAAGAGGTCCGC 60.675 57.143 0.00 0.00 0.00 5.54
410 411 1.900486 AGGGTGTTTAGAAGAGGTCCG 59.100 52.381 0.00 0.00 0.00 4.79
411 412 2.904434 TCAGGGTGTTTAGAAGAGGTCC 59.096 50.000 0.00 0.00 0.00 4.46
412 413 3.323979 TGTCAGGGTGTTTAGAAGAGGTC 59.676 47.826 0.00 0.00 0.00 3.85
413 414 3.314693 TGTCAGGGTGTTTAGAAGAGGT 58.685 45.455 0.00 0.00 0.00 3.85
414 415 4.256920 CATGTCAGGGTGTTTAGAAGAGG 58.743 47.826 0.00 0.00 0.00 3.69
415 416 3.686726 GCATGTCAGGGTGTTTAGAAGAG 59.313 47.826 0.00 0.00 0.00 2.85
416 417 3.327757 AGCATGTCAGGGTGTTTAGAAGA 59.672 43.478 0.00 0.00 0.00 2.87
417 418 3.679389 AGCATGTCAGGGTGTTTAGAAG 58.321 45.455 0.00 0.00 0.00 2.85
418 419 3.788227 AGCATGTCAGGGTGTTTAGAA 57.212 42.857 0.00 0.00 0.00 2.10
419 420 6.346096 GTTATAGCATGTCAGGGTGTTTAGA 58.654 40.000 0.00 0.00 0.00 2.10
420 421 5.234329 CGTTATAGCATGTCAGGGTGTTTAG 59.766 44.000 0.00 0.00 0.00 1.85
421 422 5.113383 CGTTATAGCATGTCAGGGTGTTTA 58.887 41.667 0.00 0.00 0.00 2.01
422 423 3.938963 CGTTATAGCATGTCAGGGTGTTT 59.061 43.478 0.00 0.00 0.00 2.83
423 424 3.531538 CGTTATAGCATGTCAGGGTGTT 58.468 45.455 0.00 0.00 0.00 3.32
424 425 2.158957 CCGTTATAGCATGTCAGGGTGT 60.159 50.000 0.00 0.00 0.00 4.16
425 426 2.158957 ACCGTTATAGCATGTCAGGGTG 60.159 50.000 0.00 0.00 0.00 4.61
426 427 2.116238 ACCGTTATAGCATGTCAGGGT 58.884 47.619 0.00 0.00 0.00 4.34
427 428 2.483876 CACCGTTATAGCATGTCAGGG 58.516 52.381 0.00 0.00 0.00 4.45
428 429 1.867233 GCACCGTTATAGCATGTCAGG 59.133 52.381 0.00 0.00 0.00 3.86
429 430 2.826428 AGCACCGTTATAGCATGTCAG 58.174 47.619 0.00 0.00 0.00 3.51
430 431 2.979814 AGCACCGTTATAGCATGTCA 57.020 45.000 0.00 0.00 0.00 3.58
431 432 3.679980 CCATAGCACCGTTATAGCATGTC 59.320 47.826 0.00 0.00 0.00 3.06
432 433 3.664107 CCATAGCACCGTTATAGCATGT 58.336 45.455 0.00 0.00 0.00 3.21
433 434 2.416547 GCCATAGCACCGTTATAGCATG 59.583 50.000 0.00 0.00 39.53 4.06
434 435 2.699954 GCCATAGCACCGTTATAGCAT 58.300 47.619 0.00 0.00 39.53 3.79
435 436 1.604438 CGCCATAGCACCGTTATAGCA 60.604 52.381 0.00 0.00 39.83 3.49
436 437 1.068474 CGCCATAGCACCGTTATAGC 58.932 55.000 0.00 0.00 39.83 2.97
437 438 1.068474 GCGCCATAGCACCGTTATAG 58.932 55.000 0.00 0.00 39.83 1.31
438 439 0.389757 TGCGCCATAGCACCGTTATA 59.610 50.000 4.18 0.00 42.92 0.98
439 440 1.145156 TGCGCCATAGCACCGTTAT 59.855 52.632 4.18 0.00 42.92 1.89
440 441 2.579738 TGCGCCATAGCACCGTTA 59.420 55.556 4.18 0.00 42.92 3.18
464 465 8.034804 GGTCCTGTAGCATGAACAAAATATTTT 58.965 33.333 7.64 7.64 0.00 1.82
465 466 7.397192 AGGTCCTGTAGCATGAACAAAATATTT 59.603 33.333 0.00 0.00 0.00 1.40
466 467 6.891908 AGGTCCTGTAGCATGAACAAAATATT 59.108 34.615 0.00 0.00 0.00 1.28
467 468 6.426587 AGGTCCTGTAGCATGAACAAAATAT 58.573 36.000 0.00 0.00 0.00 1.28
468 469 5.815581 AGGTCCTGTAGCATGAACAAAATA 58.184 37.500 0.00 0.00 0.00 1.40
469 470 4.666512 AGGTCCTGTAGCATGAACAAAAT 58.333 39.130 0.00 0.00 0.00 1.82
470 471 4.072131 GAGGTCCTGTAGCATGAACAAAA 58.928 43.478 0.00 0.00 0.00 2.44
471 472 3.327757 AGAGGTCCTGTAGCATGAACAAA 59.672 43.478 0.00 0.00 0.00 2.83
472 473 2.906389 AGAGGTCCTGTAGCATGAACAA 59.094 45.455 0.00 0.00 0.00 2.83
473 474 2.497675 GAGAGGTCCTGTAGCATGAACA 59.502 50.000 0.00 0.00 0.00 3.18
474 475 2.763448 AGAGAGGTCCTGTAGCATGAAC 59.237 50.000 0.00 0.00 0.00 3.18
475 476 3.107402 AGAGAGGTCCTGTAGCATGAA 57.893 47.619 0.00 0.00 0.00 2.57
476 477 2.836636 AGAGAGGTCCTGTAGCATGA 57.163 50.000 0.00 0.00 0.00 3.07
477 478 3.957497 AGTAAGAGAGGTCCTGTAGCATG 59.043 47.826 0.00 0.00 0.00 4.06
478 479 4.258457 AGTAAGAGAGGTCCTGTAGCAT 57.742 45.455 0.00 0.00 0.00 3.79
479 480 3.741245 AGTAAGAGAGGTCCTGTAGCA 57.259 47.619 0.00 0.00 0.00 3.49
480 481 4.525024 TGTAGTAAGAGAGGTCCTGTAGC 58.475 47.826 0.00 0.00 0.00 3.58
481 482 5.104444 TCCTGTAGTAAGAGAGGTCCTGTAG 60.104 48.000 0.00 0.00 31.69 2.74
482 483 4.786994 TCCTGTAGTAAGAGAGGTCCTGTA 59.213 45.833 0.00 0.00 31.69 2.74
483 484 3.592427 TCCTGTAGTAAGAGAGGTCCTGT 59.408 47.826 0.00 0.00 31.69 4.00
484 485 3.949113 GTCCTGTAGTAAGAGAGGTCCTG 59.051 52.174 0.00 0.00 31.69 3.86
485 486 3.053470 GGTCCTGTAGTAAGAGAGGTCCT 60.053 52.174 0.00 0.00 35.85 3.85
486 487 3.053470 AGGTCCTGTAGTAAGAGAGGTCC 60.053 52.174 0.00 0.00 38.05 4.46
487 488 4.080186 AGAGGTCCTGTAGTAAGAGAGGTC 60.080 50.000 0.00 0.00 31.69 3.85
488 489 3.853784 AGAGGTCCTGTAGTAAGAGAGGT 59.146 47.826 0.00 0.00 31.69 3.85
489 490 4.165372 AGAGAGGTCCTGTAGTAAGAGAGG 59.835 50.000 0.00 0.00 0.00 3.69
490 491 5.367945 AGAGAGGTCCTGTAGTAAGAGAG 57.632 47.826 0.00 0.00 0.00 3.20
491 492 5.782677 AAGAGAGGTCCTGTAGTAAGAGA 57.217 43.478 0.00 0.00 0.00 3.10
492 493 6.038936 GCTTAAGAGAGGTCCTGTAGTAAGAG 59.961 46.154 16.72 2.48 0.00 2.85
493 494 5.887035 GCTTAAGAGAGGTCCTGTAGTAAGA 59.113 44.000 16.72 0.00 0.00 2.10
494 495 5.220892 CGCTTAAGAGAGGTCCTGTAGTAAG 60.221 48.000 6.67 5.07 0.00 2.34
495 496 4.639310 CGCTTAAGAGAGGTCCTGTAGTAA 59.361 45.833 6.67 0.00 0.00 2.24
496 497 4.197750 CGCTTAAGAGAGGTCCTGTAGTA 58.802 47.826 6.67 0.00 0.00 1.82
497 498 3.018149 CGCTTAAGAGAGGTCCTGTAGT 58.982 50.000 6.67 0.00 0.00 2.73
498 499 2.223618 GCGCTTAAGAGAGGTCCTGTAG 60.224 54.545 10.70 0.00 0.00 2.74
499 500 1.749634 GCGCTTAAGAGAGGTCCTGTA 59.250 52.381 10.70 0.00 0.00 2.74
500 501 0.533032 GCGCTTAAGAGAGGTCCTGT 59.467 55.000 10.70 0.00 0.00 4.00
501 502 0.820871 AGCGCTTAAGAGAGGTCCTG 59.179 55.000 2.64 0.00 0.00 3.86
502 503 2.438800 TAGCGCTTAAGAGAGGTCCT 57.561 50.000 18.68 0.00 35.09 3.85
503 504 3.366577 GCTATAGCGCTTAAGAGAGGTCC 60.367 52.174 18.68 0.00 35.09 4.46
504 505 3.828786 GCTATAGCGCTTAAGAGAGGTC 58.171 50.000 18.68 0.00 35.09 3.85
505 506 3.926821 GCTATAGCGCTTAAGAGAGGT 57.073 47.619 18.68 6.68 37.23 3.85
518 519 3.560503 CTCTGCTGAAGTACGCTATAGC 58.439 50.000 15.09 15.09 35.60 2.97
519 520 3.252215 AGCTCTGCTGAAGTACGCTATAG 59.748 47.826 2.98 0.00 37.57 1.31
520 521 3.215151 AGCTCTGCTGAAGTACGCTATA 58.785 45.455 2.98 0.00 37.57 1.31
521 522 2.028130 AGCTCTGCTGAAGTACGCTAT 58.972 47.619 2.98 0.00 37.57 2.97
522 523 1.464734 AGCTCTGCTGAAGTACGCTA 58.535 50.000 2.98 0.00 37.57 4.26
523 524 1.464734 TAGCTCTGCTGAAGTACGCT 58.535 50.000 8.86 8.86 40.10 5.07
524 525 2.500509 ATAGCTCTGCTGAAGTACGC 57.499 50.000 1.96 0.00 40.10 4.42
525 526 6.887376 TTTAAATAGCTCTGCTGAAGTACG 57.113 37.500 1.96 0.00 40.10 3.67
526 527 7.119262 TGGTTTTAAATAGCTCTGCTGAAGTAC 59.881 37.037 1.96 0.00 40.10 2.73
527 528 7.165485 TGGTTTTAAATAGCTCTGCTGAAGTA 58.835 34.615 1.96 0.00 40.10 2.24
528 529 6.003950 TGGTTTTAAATAGCTCTGCTGAAGT 58.996 36.000 1.96 0.00 40.10 3.01
529 530 6.500684 TGGTTTTAAATAGCTCTGCTGAAG 57.499 37.500 1.96 0.00 40.10 3.02
530 531 6.127647 CCATGGTTTTAAATAGCTCTGCTGAA 60.128 38.462 2.57 0.00 40.10 3.02
531 532 5.357878 CCATGGTTTTAAATAGCTCTGCTGA 59.642 40.000 2.57 0.00 40.10 4.26
532 533 5.126061 ACCATGGTTTTAAATAGCTCTGCTG 59.874 40.000 13.00 0.00 40.10 4.41
533 534 5.264395 ACCATGGTTTTAAATAGCTCTGCT 58.736 37.500 13.00 0.00 43.41 4.24
534 535 5.582689 ACCATGGTTTTAAATAGCTCTGC 57.417 39.130 13.00 0.00 0.00 4.26
535 536 6.378280 AGGAACCATGGTTTTAAATAGCTCTG 59.622 38.462 30.33 0.00 38.60 3.35
536 537 6.494059 AGGAACCATGGTTTTAAATAGCTCT 58.506 36.000 30.33 11.41 38.60 4.09
537 538 6.775594 AGGAACCATGGTTTTAAATAGCTC 57.224 37.500 30.33 13.81 38.60 4.09
538 539 9.574516 CTATAGGAACCATGGTTTTAAATAGCT 57.425 33.333 30.33 12.42 38.60 3.32
539 540 9.569122 TCTATAGGAACCATGGTTTTAAATAGC 57.431 33.333 30.33 14.91 38.60 2.97
541 542 9.856162 GGTCTATAGGAACCATGGTTTTAAATA 57.144 33.333 30.33 21.43 38.60 1.40
542 543 7.501225 CGGTCTATAGGAACCATGGTTTTAAAT 59.499 37.037 30.33 21.46 38.60 1.40
543 544 6.824704 CGGTCTATAGGAACCATGGTTTTAAA 59.175 38.462 30.33 16.65 38.60 1.52
544 545 6.350906 CGGTCTATAGGAACCATGGTTTTAA 58.649 40.000 30.33 18.34 38.60 1.52
545 546 5.163280 CCGGTCTATAGGAACCATGGTTTTA 60.163 44.000 30.33 23.84 38.60 1.52
546 547 4.384868 CCGGTCTATAGGAACCATGGTTTT 60.385 45.833 30.33 22.60 38.60 2.43
547 548 3.135895 CCGGTCTATAGGAACCATGGTTT 59.864 47.826 30.33 18.37 38.60 3.27
548 549 2.704065 CCGGTCTATAGGAACCATGGTT 59.296 50.000 30.23 30.23 41.54 3.67
549 550 2.090943 TCCGGTCTATAGGAACCATGGT 60.091 50.000 13.00 13.00 32.86 3.55
550 551 2.605257 TCCGGTCTATAGGAACCATGG 58.395 52.381 11.19 11.19 32.86 3.66
551 552 4.682778 TTTCCGGTCTATAGGAACCATG 57.317 45.455 0.00 2.41 45.23 3.66
552 553 5.221864 GGAATTTCCGGTCTATAGGAACCAT 60.222 44.000 0.00 0.00 45.23 3.55
553 554 4.102054 GGAATTTCCGGTCTATAGGAACCA 59.898 45.833 0.00 0.00 45.23 3.67
564 565 2.375173 ACGTACAGGAATTTCCGGTC 57.625 50.000 22.15 13.73 41.06 4.79
587 593 1.016130 AATCTGACTGCTGAACGGCG 61.016 55.000 4.80 4.80 34.52 6.46
603 609 1.869767 CTCTCAGCCCATGCGTTAATC 59.130 52.381 0.00 0.00 44.33 1.75
724 733 8.758829 GGAAAGGGTTGGTGAGATTATAAATTT 58.241 33.333 0.00 0.00 0.00 1.82
725 734 7.344612 GGGAAAGGGTTGGTGAGATTATAAATT 59.655 37.037 0.00 0.00 0.00 1.82
799 822 5.940603 TTTTTGTGCTGTACGATTTGTTG 57.059 34.783 0.00 0.00 0.00 3.33
881 904 2.975266 AGAGAGAGATTGCTGCAAGTG 58.025 47.619 20.72 0.00 35.30 3.16
888 911 7.452562 AGAGAAAGAAAAAGAGAGAGATTGCT 58.547 34.615 0.00 0.00 0.00 3.91
889 912 7.603784 AGAGAGAAAGAAAAAGAGAGAGATTGC 59.396 37.037 0.00 0.00 0.00 3.56
904 927 2.092323 TGATCGGCGAGAGAGAAAGAA 58.908 47.619 17.22 0.00 0.00 2.52
908 931 1.819288 AGTTTGATCGGCGAGAGAGAA 59.181 47.619 17.22 2.85 0.00 2.87
918 941 1.871039 ACGTTGACCAAGTTTGATCGG 59.129 47.619 0.00 0.00 0.00 4.18
919 942 2.409752 CGACGTTGACCAAGTTTGATCG 60.410 50.000 0.00 0.00 0.00 3.69
922 945 1.928503 GTCGACGTTGACCAAGTTTGA 59.071 47.619 23.14 0.00 32.61 2.69
923 946 2.362668 GTCGACGTTGACCAAGTTTG 57.637 50.000 23.14 0.00 32.61 2.93
931 954 1.659335 TTGCTCGGTCGACGTTGAC 60.659 57.895 25.13 25.13 44.69 3.18
1293 1326 3.048941 GAGCTCGGCGTCTACGGTT 62.049 63.158 6.85 0.00 40.23 4.44
1308 1341 3.643978 GGCGCCATGTCGATGAGC 61.644 66.667 24.80 0.00 34.36 4.26
1718 1751 2.347490 GCCCTTCTGACGCCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
1920 1953 1.004918 GTTCAGGAGGTCACCCACG 60.005 63.158 0.00 0.00 0.00 4.94
2442 2490 5.852755 TCGTGTTACGTACTTGTACAAGATG 59.147 40.000 36.14 26.05 43.14 2.90
2492 2540 1.152631 AACACCCGGGTCCTTTTGG 60.153 57.895 27.51 13.88 42.21 3.28
2505 2553 0.534203 TTCTCTCCCGTTGCAACACC 60.534 55.000 28.01 2.77 0.00 4.16
2531 2579 5.279306 GGTCATGGCAATTGCAGATTATGAT 60.279 40.000 30.32 7.09 44.36 2.45
2532 2580 4.038282 GGTCATGGCAATTGCAGATTATGA 59.962 41.667 30.32 24.02 44.36 2.15
2533 2581 4.202172 TGGTCATGGCAATTGCAGATTATG 60.202 41.667 30.32 22.51 44.36 1.90
2546 2595 1.106351 AGCAAAACGTGGTCATGGCA 61.106 50.000 0.00 0.00 29.87 4.92
2581 2630 8.604890 GGTCTCAATAAGAAAAAGAGTAATCGG 58.395 37.037 0.00 0.00 35.21 4.18
2586 2635 9.315363 AGAGAGGTCTCAATAAGAAAAAGAGTA 57.685 33.333 9.64 0.00 45.21 2.59
2673 2790 2.057316 CTCGCGGCTTCTCAATGATAG 58.943 52.381 6.13 0.00 0.00 2.08
2798 3255 7.271223 CCTTGCTTTTATGATTGAAGTGTAACG 59.729 37.037 0.00 0.00 45.86 3.18
2878 3351 4.280677 GGGAATGAACATGTCACCTTTTCA 59.719 41.667 0.00 0.00 39.72 2.69
2956 3429 4.929146 AGGTAATGGCTCTTTACACCTT 57.071 40.909 10.78 0.00 30.84 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.