Multiple sequence alignment - TraesCS5D01G341800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G341800 chr5D 100.000 6347 0 0 1 6347 429903719 429910065 0.000000e+00 11721
1 TraesCS5D01G341800 chr5D 100.000 1571 0 0 6677 8247 429910395 429911965 0.000000e+00 2902
2 TraesCS5D01G341800 chr5D 82.373 885 108 18 3709 4585 558500606 558499762 0.000000e+00 726
3 TraesCS5D01G341800 chr5A 94.743 5554 173 45 863 6347 545632820 545638323 0.000000e+00 8528
4 TraesCS5D01G341800 chr5A 96.368 881 21 4 6677 7557 545638777 545639646 0.000000e+00 1439
5 TraesCS5D01G341800 chr5A 90.558 233 14 5 7991 8218 545647907 545648136 1.350000e-77 302
6 TraesCS5D01G341800 chr5A 91.566 166 7 2 7826 7991 545647516 545647674 1.080000e-53 222
7 TraesCS5D01G341800 chr5A 88.372 129 6 5 7581 7709 545639726 545639845 6.670000e-31 147
8 TraesCS5D01G341800 chr5A 85.612 139 6 3 1 135 545632542 545632670 5.190000e-27 134
9 TraesCS5D01G341800 chr5A 85.841 113 5 6 161 272 545632738 545632840 8.750000e-20 110
10 TraesCS5D01G341800 chr5B 96.151 3715 93 17 710 4403 519146729 519150414 0.000000e+00 6023
11 TraesCS5D01G341800 chr5B 94.472 1990 41 26 4397 6326 519150350 519152330 0.000000e+00 3001
12 TraesCS5D01G341800 chr5B 94.983 897 28 7 6677 7557 519152757 519153652 0.000000e+00 1391
13 TraesCS5D01G341800 chr5B 85.928 469 45 14 1 460 519145954 519146410 1.610000e-131 481
14 TraesCS5D01G341800 chr5B 92.537 201 12 1 7996 8193 519153978 519154178 1.350000e-72 285
15 TraesCS5D01G341800 chr6D 82.757 1734 203 47 3569 5279 51461009 51459349 0.000000e+00 1458
16 TraesCS5D01G341800 chr6D 82.934 1002 133 20 3569 4566 379891330 379890363 0.000000e+00 869
17 TraesCS5D01G341800 chr6D 84.990 513 73 4 4254 4764 45970822 45970312 1.230000e-142 518
18 TraesCS5D01G341800 chr6D 86.811 417 45 8 4499 4914 379890358 379889951 2.710000e-124 457
19 TraesCS5D01G341800 chr6D 85.321 436 54 6 2763 3194 51461722 51461293 7.600000e-120 442
20 TraesCS5D01G341800 chr6D 76.774 310 48 18 4981 5279 379888454 379888158 1.430000e-32 152
21 TraesCS5D01G341800 chrUn 97.710 393 7 1 3506 3898 479832839 479832449 0.000000e+00 675
22 TraesCS5D01G341800 chr7A 82.271 643 95 11 4238 4876 20425248 20424621 9.420000e-149 538
23 TraesCS5D01G341800 chr4A 85.409 514 65 7 4254 4764 620472799 620473305 7.330000e-145 525
24 TraesCS5D01G341800 chr4D 85.156 512 74 2 4254 4764 385995529 385996039 2.640000e-144 523
25 TraesCS5D01G341800 chr3A 84.990 513 72 5 4254 4764 729896217 729896726 4.410000e-142 516
26 TraesCS5D01G341800 chr3A 79.764 593 82 17 4145 4724 721553985 721554552 6.000000e-106 396
27 TraesCS5D01G341800 chr1D 81.851 551 66 13 3988 4537 182528211 182528728 4.570000e-117 433
28 TraesCS5D01G341800 chr3D 82.645 484 59 13 4438 4914 455711797 455711332 9.970000e-109 405
29 TraesCS5D01G341800 chr3D 82.035 462 65 9 4438 4895 455701880 455701433 2.170000e-100 377
30 TraesCS5D01G341800 chr3D 81.491 389 52 11 4478 4861 42742276 42741903 1.350000e-77 302
31 TraesCS5D01G341800 chr3D 90.816 196 16 1 3988 4183 464125490 464125297 2.280000e-65 261
32 TraesCS5D01G341800 chr3D 78.116 361 42 15 4180 4537 464116891 464116565 2.350000e-45 195
33 TraesCS5D01G341800 chr2B 84.834 211 13 6 3988 4197 105375544 105375352 2.350000e-45 195
34 TraesCS5D01G341800 chr2B 84.211 152 15 2 3377 3519 105375942 105375791 1.120000e-28 139
35 TraesCS5D01G341800 chr2D 87.143 140 10 4 4812 4950 543165620 543165752 1.430000e-32 152
36 TraesCS5D01G341800 chr1A 88.350 103 12 0 4812 4914 513424942 513424840 3.130000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G341800 chr5D 429903719 429911965 8246 False 7311.500000 11721 100.0000 1 8247 2 chr5D.!!$F1 8246
1 TraesCS5D01G341800 chr5D 558499762 558500606 844 True 726.000000 726 82.3730 3709 4585 1 chr5D.!!$R1 876
2 TraesCS5D01G341800 chr5A 545632542 545639845 7303 False 2071.600000 8528 90.1872 1 7709 5 chr5A.!!$F1 7708
3 TraesCS5D01G341800 chr5A 545647516 545648136 620 False 262.000000 302 91.0620 7826 8218 2 chr5A.!!$F2 392
4 TraesCS5D01G341800 chr5B 519145954 519154178 8224 False 2236.200000 6023 92.8142 1 8193 5 chr5B.!!$F1 8192
5 TraesCS5D01G341800 chr6D 51459349 51461722 2373 True 950.000000 1458 84.0390 2763 5279 2 chr6D.!!$R2 2516
6 TraesCS5D01G341800 chr6D 45970312 45970822 510 True 518.000000 518 84.9900 4254 4764 1 chr6D.!!$R1 510
7 TraesCS5D01G341800 chr6D 379888158 379891330 3172 True 492.666667 869 82.1730 3569 5279 3 chr6D.!!$R3 1710
8 TraesCS5D01G341800 chr7A 20424621 20425248 627 True 538.000000 538 82.2710 4238 4876 1 chr7A.!!$R1 638
9 TraesCS5D01G341800 chr4A 620472799 620473305 506 False 525.000000 525 85.4090 4254 4764 1 chr4A.!!$F1 510
10 TraesCS5D01G341800 chr4D 385995529 385996039 510 False 523.000000 523 85.1560 4254 4764 1 chr4D.!!$F1 510
11 TraesCS5D01G341800 chr3A 729896217 729896726 509 False 516.000000 516 84.9900 4254 4764 1 chr3A.!!$F2 510
12 TraesCS5D01G341800 chr3A 721553985 721554552 567 False 396.000000 396 79.7640 4145 4724 1 chr3A.!!$F1 579
13 TraesCS5D01G341800 chr1D 182528211 182528728 517 False 433.000000 433 81.8510 3988 4537 1 chr1D.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 776 0.179067 GTGTGTTGGGTCGAGGAACA 60.179 55.000 0.00 0.00 0.00 3.18 F
666 793 0.614812 ACATTTTTCATGCAGCCCCC 59.385 50.000 0.00 0.00 0.00 5.40 F
670 797 0.686224 TTTTCATGCAGCCCCCTTTG 59.314 50.000 0.00 0.00 0.00 2.77 F
682 810 0.826062 CCCCTTTGCTGCCCATAAAG 59.174 55.000 0.00 0.01 0.00 1.85 F
2000 2189 1.262683 GCATTACGATCTGCTTCTGCC 59.737 52.381 0.00 0.00 38.71 4.85 F
2004 2193 1.769026 ACGATCTGCTTCTGCCTCTA 58.231 50.000 0.00 0.00 38.71 2.43 F
2005 2194 2.103373 ACGATCTGCTTCTGCCTCTAA 58.897 47.619 0.00 0.00 38.71 2.10 F
3740 4003 0.606401 ATGTTCAGGTCTTGGCACCG 60.606 55.000 0.00 0.00 41.90 4.94 F
3749 4013 2.223745 GTCTTGGCACCGGTCTTTAAA 58.776 47.619 2.59 0.00 0.00 1.52 F
4990 6802 1.616865 GACCAACCCCCTTTGTTTAGC 59.383 52.381 0.00 0.00 0.00 3.09 F
5466 7332 1.899814 GGCCGTATCATGGGATGTCTA 59.100 52.381 0.00 0.00 34.89 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2635 1.032014 CCATGTGGCCCCTTTAATCG 58.968 55.000 0.00 0.00 0.00 3.34 R
2546 2739 7.343357 TGACATAGAACCCCTTAAATAACAGG 58.657 38.462 0.00 0.00 0.00 4.00 R
2862 3057 8.820933 AGACACACATCATGATATTAAAGAACG 58.179 33.333 8.15 0.00 0.00 3.95 R
2941 3142 7.606456 TGACAGTGACCTCCTGATTTTATTTAC 59.394 37.037 0.00 0.00 34.04 2.01 R
3312 3570 3.304559 CCTCGACTTCAACTTGATAAGCG 59.695 47.826 0.00 0.00 0.00 4.68 R
3614 3875 3.891977 AGATACGCTCCAGCTTTATCAGA 59.108 43.478 14.75 0.00 36.73 3.27 R
3773 4037 4.211125 TGTTAACCACTGCCAAGAATTCA 58.789 39.130 8.44 0.00 0.00 2.57 R
4990 6802 4.083537 AGACGAGAATAGAATAGCGCTGAG 60.084 45.833 22.90 0.00 0.00 3.35 R
5289 7123 4.344102 CCCCTGGTTCTATATCGAACTTCA 59.656 45.833 16.95 8.72 42.20 3.02 R
6737 8744 0.755686 TGTTTGCCGAGCCCAAAATT 59.244 45.000 0.00 0.00 34.33 1.82 R
7559 9592 0.179086 CCCTTGCAACGTTTTTGCCT 60.179 50.000 8.16 0.00 44.32 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.226101 GCACGCCATCAACGTCATG 60.226 57.895 0.00 0.00 42.96 3.07
67 68 2.642427 CCATCAACGTCATGGATCCAA 58.358 47.619 20.67 0.00 43.32 3.53
151 169 2.590645 CCCGACCCGAGAGAGAGA 59.409 66.667 0.00 0.00 0.00 3.10
152 170 1.525077 CCCGACCCGAGAGAGAGAG 60.525 68.421 0.00 0.00 0.00 3.20
153 171 1.222387 CCGACCCGAGAGAGAGAGT 59.778 63.158 0.00 0.00 0.00 3.24
154 172 0.812412 CCGACCCGAGAGAGAGAGTC 60.812 65.000 0.00 0.00 0.00 3.36
155 173 0.812412 CGACCCGAGAGAGAGAGTCC 60.812 65.000 0.00 0.00 0.00 3.85
156 174 0.253610 GACCCGAGAGAGAGAGTCCA 59.746 60.000 0.00 0.00 0.00 4.02
157 175 0.923358 ACCCGAGAGAGAGAGTCCAT 59.077 55.000 0.00 0.00 0.00 3.41
159 177 1.604604 CCGAGAGAGAGAGTCCATCC 58.395 60.000 0.00 0.00 0.00 3.51
202 249 2.438434 CAACGCAGATCCCCACCC 60.438 66.667 0.00 0.00 0.00 4.61
203 250 2.933287 AACGCAGATCCCCACCCA 60.933 61.111 0.00 0.00 0.00 4.51
204 251 2.534396 AACGCAGATCCCCACCCAA 61.534 57.895 0.00 0.00 0.00 4.12
205 252 2.438434 CGCAGATCCCCACCCAAC 60.438 66.667 0.00 0.00 0.00 3.77
206 253 2.043953 GCAGATCCCCACCCAACC 60.044 66.667 0.00 0.00 0.00 3.77
222 279 2.983592 CCCAACCCAACCACTCGC 60.984 66.667 0.00 0.00 0.00 5.03
223 280 3.353836 CCAACCCAACCACTCGCG 61.354 66.667 0.00 0.00 0.00 5.87
224 281 4.025401 CAACCCAACCACTCGCGC 62.025 66.667 0.00 0.00 0.00 6.86
395 452 2.510613 CCCAGGAAAAAGCCGTTTCTA 58.489 47.619 9.00 0.00 37.60 2.10
396 453 2.888414 CCCAGGAAAAAGCCGTTTCTAA 59.112 45.455 9.00 0.00 37.60 2.10
400 457 2.029649 GGAAAAAGCCGTTTCTAACCCC 60.030 50.000 9.00 0.00 37.60 4.95
406 463 1.301874 CGTTTCTAACCCCCGCACA 60.302 57.895 0.00 0.00 0.00 4.57
408 465 1.073548 TTTCTAACCCCCGCACACC 59.926 57.895 0.00 0.00 0.00 4.16
409 466 2.414658 TTTCTAACCCCCGCACACCC 62.415 60.000 0.00 0.00 0.00 4.61
410 467 3.642503 CTAACCCCCGCACACCCA 61.643 66.667 0.00 0.00 0.00 4.51
411 468 3.912745 CTAACCCCCGCACACCCAC 62.913 68.421 0.00 0.00 0.00 4.61
436 494 0.586502 CGCGCCAGAAAAATAGTCGC 60.587 55.000 0.00 0.00 38.00 5.19
450 508 4.405671 TCGCTCGACTCCTCCGGT 62.406 66.667 0.00 0.00 0.00 5.28
452 510 2.110967 CGCTCGACTCCTCCGGTTA 61.111 63.158 0.00 0.00 0.00 2.85
456 514 2.603953 CTCGACTCCTCCGGTTAAAAC 58.396 52.381 0.00 0.00 0.00 2.43
457 515 1.962807 TCGACTCCTCCGGTTAAAACA 59.037 47.619 0.00 0.00 0.00 2.83
458 516 2.064014 CGACTCCTCCGGTTAAAACAC 58.936 52.381 0.00 0.00 0.00 3.32
459 517 2.288640 CGACTCCTCCGGTTAAAACACT 60.289 50.000 0.00 0.00 0.00 3.55
460 518 3.324117 GACTCCTCCGGTTAAAACACTC 58.676 50.000 0.00 0.00 0.00 3.51
461 519 2.038164 ACTCCTCCGGTTAAAACACTCC 59.962 50.000 0.00 0.00 0.00 3.85
462 520 2.038033 CTCCTCCGGTTAAAACACTCCA 59.962 50.000 0.00 0.00 0.00 3.86
463 521 2.148768 CCTCCGGTTAAAACACTCCAC 58.851 52.381 0.00 0.00 0.00 4.02
464 522 2.148768 CTCCGGTTAAAACACTCCACC 58.851 52.381 0.00 0.00 0.00 4.61
465 523 1.489649 TCCGGTTAAAACACTCCACCA 59.510 47.619 0.00 0.00 0.00 4.17
466 524 1.605232 CCGGTTAAAACACTCCACCAC 59.395 52.381 0.00 0.00 0.00 4.16
467 525 2.290464 CGGTTAAAACACTCCACCACA 58.710 47.619 0.00 0.00 0.00 4.17
468 526 2.289547 CGGTTAAAACACTCCACCACAG 59.710 50.000 0.00 0.00 0.00 3.66
481 568 1.521423 CACCACAGTTCGTTCGAGTTC 59.479 52.381 0.00 0.00 0.00 3.01
483 570 2.223971 ACCACAGTTCGTTCGAGTTCAT 60.224 45.455 0.00 0.00 0.00 2.57
488 575 6.347402 CCACAGTTCGTTCGAGTTCATATTTT 60.347 38.462 0.00 0.00 0.00 1.82
489 576 7.069569 CACAGTTCGTTCGAGTTCATATTTTT 58.930 34.615 0.00 0.00 0.00 1.94
490 577 7.266335 CACAGTTCGTTCGAGTTCATATTTTTC 59.734 37.037 0.00 0.00 0.00 2.29
491 578 7.042321 ACAGTTCGTTCGAGTTCATATTTTTCA 60.042 33.333 0.00 0.00 0.00 2.69
492 579 7.957484 CAGTTCGTTCGAGTTCATATTTTTCAT 59.043 33.333 0.00 0.00 0.00 2.57
495 582 8.251750 TCGTTCGAGTTCATATTTTTCATCTT 57.748 30.769 0.00 0.00 0.00 2.40
496 583 8.380644 TCGTTCGAGTTCATATTTTTCATCTTC 58.619 33.333 0.00 0.00 0.00 2.87
497 584 7.368254 CGTTCGAGTTCATATTTTTCATCTTCG 59.632 37.037 0.00 0.00 0.00 3.79
498 585 7.234187 TCGAGTTCATATTTTTCATCTTCGG 57.766 36.000 0.00 0.00 0.00 4.30
499 586 6.816640 TCGAGTTCATATTTTTCATCTTCGGT 59.183 34.615 0.00 0.00 0.00 4.69
500 587 7.333423 TCGAGTTCATATTTTTCATCTTCGGTT 59.667 33.333 0.00 0.00 0.00 4.44
501 588 7.426456 CGAGTTCATATTTTTCATCTTCGGTTG 59.574 37.037 0.00 0.00 0.00 3.77
502 589 8.335532 AGTTCATATTTTTCATCTTCGGTTGA 57.664 30.769 0.00 0.00 0.00 3.18
504 591 9.226345 GTTCATATTTTTCATCTTCGGTTGATC 57.774 33.333 0.00 0.00 0.00 2.92
506 593 8.615211 TCATATTTTTCATCTTCGGTTGATCTG 58.385 33.333 0.00 0.00 0.00 2.90
508 595 3.333029 TTCATCTTCGGTTGATCTGCA 57.667 42.857 0.00 0.00 0.00 4.41
509 596 2.897436 TCATCTTCGGTTGATCTGCAG 58.103 47.619 7.63 7.63 0.00 4.41
510 597 1.329906 CATCTTCGGTTGATCTGCAGC 59.670 52.381 9.47 0.00 0.00 5.25
511 598 0.610174 TCTTCGGTTGATCTGCAGCT 59.390 50.000 9.47 0.00 0.00 4.24
512 599 0.725686 CTTCGGTTGATCTGCAGCTG 59.274 55.000 10.11 10.11 35.61 4.24
513 600 1.300971 TTCGGTTGATCTGCAGCTGC 61.301 55.000 31.89 31.89 42.50 5.25
552 679 6.012113 TGGTTGTGATTCCATTCTGAATCTT 58.988 36.000 13.19 0.00 46.97 2.40
554 681 6.253746 GTTGTGATTCCATTCTGAATCTTCG 58.746 40.000 13.19 0.00 46.97 3.79
563 690 1.753649 TCTGAATCTTCGGAGCCTCTG 59.246 52.381 0.00 0.00 37.65 3.35
567 694 3.244561 TGAATCTTCGGAGCCTCTGTTTT 60.245 43.478 0.00 0.00 0.00 2.43
568 695 2.930826 TCTTCGGAGCCTCTGTTTTT 57.069 45.000 0.00 0.00 0.00 1.94
587 714 3.876309 TTTTTGTAGGTGGAGCCTCTT 57.124 42.857 0.00 0.00 46.96 2.85
591 718 3.418684 TGTAGGTGGAGCCTCTTTTTC 57.581 47.619 0.00 0.00 46.96 2.29
595 722 1.821136 GGTGGAGCCTCTTTTTCATGG 59.179 52.381 0.00 0.00 0.00 3.66
597 724 3.359950 GTGGAGCCTCTTTTTCATGGAT 58.640 45.455 0.00 0.00 0.00 3.41
606 733 6.623767 GCCTCTTTTTCATGGATGTAACTGTC 60.624 42.308 0.00 0.00 0.00 3.51
619 746 5.400066 TGTAACTGTCTCGGAATGAATCA 57.600 39.130 0.00 0.00 0.00 2.57
624 751 2.027285 TGTCTCGGAATGAATCAAGGCA 60.027 45.455 0.00 0.00 0.00 4.75
629 756 2.357009 CGGAATGAATCAAGGCAAGGAG 59.643 50.000 0.00 0.00 0.00 3.69
630 757 2.692041 GGAATGAATCAAGGCAAGGAGG 59.308 50.000 0.00 0.00 0.00 4.30
631 758 3.359950 GAATGAATCAAGGCAAGGAGGT 58.640 45.455 0.00 0.00 0.00 3.85
632 759 2.205022 TGAATCAAGGCAAGGAGGTG 57.795 50.000 0.00 0.00 0.00 4.00
633 760 1.425066 TGAATCAAGGCAAGGAGGTGT 59.575 47.619 0.00 0.00 0.00 4.16
634 761 1.815003 GAATCAAGGCAAGGAGGTGTG 59.185 52.381 0.00 0.00 0.00 3.82
635 762 0.773644 ATCAAGGCAAGGAGGTGTGT 59.226 50.000 0.00 0.00 0.00 3.72
636 763 0.550914 TCAAGGCAAGGAGGTGTGTT 59.449 50.000 0.00 0.00 0.00 3.32
637 764 0.670162 CAAGGCAAGGAGGTGTGTTG 59.330 55.000 0.00 0.00 0.00 3.33
638 765 0.468029 AAGGCAAGGAGGTGTGTTGG 60.468 55.000 0.00 0.00 0.00 3.77
639 766 1.903404 GGCAAGGAGGTGTGTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
640 767 1.152756 GCAAGGAGGTGTGTTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
641 768 1.172812 GCAAGGAGGTGTGTTGGGTC 61.173 60.000 0.00 0.00 0.00 4.46
642 769 0.884704 CAAGGAGGTGTGTTGGGTCG 60.885 60.000 0.00 0.00 0.00 4.79
643 770 1.052124 AAGGAGGTGTGTTGGGTCGA 61.052 55.000 0.00 0.00 0.00 4.20
644 771 1.004918 GGAGGTGTGTTGGGTCGAG 60.005 63.158 0.00 0.00 0.00 4.04
645 772 1.004918 GAGGTGTGTTGGGTCGAGG 60.005 63.158 0.00 0.00 0.00 4.63
646 773 1.458777 AGGTGTGTTGGGTCGAGGA 60.459 57.895 0.00 0.00 0.00 3.71
647 774 1.052124 AGGTGTGTTGGGTCGAGGAA 61.052 55.000 0.00 0.00 0.00 3.36
648 775 0.883370 GGTGTGTTGGGTCGAGGAAC 60.883 60.000 0.00 0.00 0.00 3.62
649 776 0.179067 GTGTGTTGGGTCGAGGAACA 60.179 55.000 0.00 0.00 0.00 3.18
650 777 0.762418 TGTGTTGGGTCGAGGAACAT 59.238 50.000 7.00 0.00 32.48 2.71
661 788 4.161333 GTCGAGGAACATTTTTCATGCAG 58.839 43.478 0.00 0.00 0.00 4.41
666 793 0.614812 ACATTTTTCATGCAGCCCCC 59.385 50.000 0.00 0.00 0.00 5.40
669 796 1.433121 TTTTTCATGCAGCCCCCTTT 58.567 45.000 0.00 0.00 0.00 3.11
670 797 0.686224 TTTTCATGCAGCCCCCTTTG 59.314 50.000 0.00 0.00 0.00 2.77
671 798 1.829523 TTTCATGCAGCCCCCTTTGC 61.830 55.000 0.00 0.00 40.67 3.68
682 810 0.826062 CCCCTTTGCTGCCCATAAAG 59.174 55.000 0.00 0.01 0.00 1.85
687 815 4.038402 CCCTTTGCTGCCCATAAAGATAAG 59.962 45.833 10.66 0.00 34.23 1.73
688 816 4.889409 CCTTTGCTGCCCATAAAGATAAGA 59.111 41.667 10.66 0.00 34.23 2.10
689 817 5.360714 CCTTTGCTGCCCATAAAGATAAGAA 59.639 40.000 10.66 0.00 34.23 2.52
705 833 2.859165 AGAAGAAATCGGCAGTGGAA 57.141 45.000 0.00 0.00 0.00 3.53
730 858 5.176223 CGTAAACCCCATGCGTTATTAGTAG 59.824 44.000 0.00 0.00 0.00 2.57
774 944 5.646692 AACCCATGCTATTTTAGGCTAGA 57.353 39.130 0.00 0.00 0.00 2.43
775 945 5.850046 ACCCATGCTATTTTAGGCTAGAT 57.150 39.130 0.00 0.00 0.00 1.98
836 1006 2.335712 CCTCCAGCTTTGCCGTTCC 61.336 63.158 0.00 0.00 0.00 3.62
849 1020 4.790861 GTTCCGGTCCGCGTCCTC 62.791 72.222 5.50 0.00 0.00 3.71
928 1115 4.373116 GGTTGCACGAGAGGCGGA 62.373 66.667 0.00 0.00 46.49 5.54
964 1153 2.036256 ATTTCAAGCTGGCCGCCT 59.964 55.556 11.61 2.58 40.39 5.52
1576 1765 4.317444 CCGCCAACCCGGTGTACA 62.317 66.667 0.00 0.00 44.51 2.90
1578 1767 2.359478 GCCAACCCGGTGTACAGG 60.359 66.667 0.00 0.00 36.97 4.00
2000 2189 1.262683 GCATTACGATCTGCTTCTGCC 59.737 52.381 0.00 0.00 38.71 4.85
2004 2193 1.769026 ACGATCTGCTTCTGCCTCTA 58.231 50.000 0.00 0.00 38.71 2.43
2005 2194 2.103373 ACGATCTGCTTCTGCCTCTAA 58.897 47.619 0.00 0.00 38.71 2.10
2006 2195 2.697751 ACGATCTGCTTCTGCCTCTAAT 59.302 45.455 0.00 0.00 38.71 1.73
2008 2197 4.125703 CGATCTGCTTCTGCCTCTAATTT 58.874 43.478 0.00 0.00 38.71 1.82
2009 2198 4.210955 CGATCTGCTTCTGCCTCTAATTTC 59.789 45.833 0.00 0.00 38.71 2.17
2011 2200 4.256920 TCTGCTTCTGCCTCTAATTTCAC 58.743 43.478 0.00 0.00 38.71 3.18
2018 2208 5.869579 TCTGCCTCTAATTTCACTTCACTT 58.130 37.500 0.00 0.00 0.00 3.16
2109 2300 9.973661 TTCTTTGGATTTTGTTCCATAGATAGA 57.026 29.630 12.41 0.00 46.50 1.98
2242 2434 8.975439 GTACGAATGTAATAGAGGGTAACAATG 58.025 37.037 0.00 0.00 31.79 2.82
2258 2450 7.968405 GGGTAACAATGAATTCATGACTGTTAC 59.032 37.037 35.41 35.41 43.27 2.50
2273 2465 6.052360 TGACTGTTACAGACTTGCAACAATA 58.948 36.000 20.07 0.00 39.44 1.90
2277 2469 6.195868 TGTTACAGACTTGCAACAATAAACG 58.804 36.000 0.00 0.00 37.57 3.60
2374 2566 9.436957 CAGTTTACCATAATCTATGACCATACC 57.563 37.037 0.00 0.00 38.45 2.73
2426 2618 9.871238 GTGTTCTCCAAATCTACTAATTAGTGA 57.129 33.333 25.27 19.72 37.10 3.41
2546 2739 6.372659 TCATACTTGCTCTTCCTTTTGATGTC 59.627 38.462 0.00 0.00 0.00 3.06
2552 2745 5.003804 GCTCTTCCTTTTGATGTCCTGTTA 58.996 41.667 0.00 0.00 0.00 2.41
2926 3125 7.013655 GGATAGTAAATGATGCCAAGTTGACAT 59.986 37.037 4.13 4.13 0.00 3.06
3036 3237 7.539034 TTGTATTCTGCAGGCTACTCATATA 57.461 36.000 15.13 0.00 0.00 0.86
3289 3490 4.475944 CCAACATTTTCGGTGAGTTCATC 58.524 43.478 0.00 0.00 0.00 2.92
3312 3570 9.722056 CATCTTTGCCAATATGTTTTACTCTAC 57.278 33.333 0.00 0.00 0.00 2.59
3341 3599 5.909477 TCAAGTTGAAGTCGAGGAAGTAAA 58.091 37.500 2.20 0.00 0.00 2.01
3614 3875 1.483827 TCTCGCTGGAAAGATGATGCT 59.516 47.619 0.00 0.00 0.00 3.79
3656 3919 4.205587 TCTCGTGGATACTTAGTCCTTCC 58.794 47.826 0.00 0.00 36.68 3.46
3739 4002 0.883833 CATGTTCAGGTCTTGGCACC 59.116 55.000 0.00 0.00 36.58 5.01
3740 4003 0.606401 ATGTTCAGGTCTTGGCACCG 60.606 55.000 0.00 0.00 41.90 4.94
3749 4013 2.223745 GTCTTGGCACCGGTCTTTAAA 58.776 47.619 2.59 0.00 0.00 1.52
3773 4037 4.956085 TGTGCTTATGTCAGTACTTGTGT 58.044 39.130 0.00 0.00 31.10 3.72
3774 4038 4.749598 TGTGCTTATGTCAGTACTTGTGTG 59.250 41.667 0.00 0.00 31.10 3.82
3781 4045 8.902540 TTATGTCAGTACTTGTGTGAATTCTT 57.097 30.769 7.05 0.00 0.00 2.52
3786 4050 3.996150 ACTTGTGTGAATTCTTGGCAG 57.004 42.857 7.05 0.52 0.00 4.85
3912 4176 5.361571 TGGCACGTCTTCATTATACTCCTTA 59.638 40.000 0.00 0.00 0.00 2.69
4281 4554 9.613428 CTTGGAATATTGATTGTTAGGTACAGA 57.387 33.333 0.00 0.00 38.19 3.41
4474 4757 5.333263 GGCCACATTCTTTTTGTTTCATTCG 60.333 40.000 0.00 0.00 0.00 3.34
4783 5154 7.126421 AGCTATTAGGAAACTCCAAATCTGAGA 59.874 37.037 0.00 0.00 43.67 3.27
4784 5155 7.936301 GCTATTAGGAAACTCCAAATCTGAGAT 59.064 37.037 0.00 0.00 43.67 2.75
4785 5156 9.844257 CTATTAGGAAACTCCAAATCTGAGATT 57.156 33.333 0.97 0.97 43.67 2.40
4787 5158 9.844257 ATTAGGAAACTCCAAATCTGAGATTAG 57.156 33.333 8.30 5.08 43.67 1.73
4861 5232 6.968131 TCTCATTCGACCTTGTAATTTCAG 57.032 37.500 0.00 0.00 0.00 3.02
4990 6802 1.616865 GACCAACCCCCTTTGTTTAGC 59.383 52.381 0.00 0.00 0.00 3.09
5159 6987 6.210396 TGATTGTACGCGAATGATGATTAC 57.790 37.500 15.93 1.36 0.00 1.89
5395 7256 6.073276 GGTTCCCATTTTCATTACAAAAGTGC 60.073 38.462 0.00 0.00 0.00 4.40
5466 7332 1.899814 GGCCGTATCATGGGATGTCTA 59.100 52.381 0.00 0.00 34.89 2.59
5747 7622 5.893824 TGCAAGAGAGGATATACAGTGAAGA 59.106 40.000 0.00 0.00 0.00 2.87
5783 7658 4.770531 ACTTGTAGGCTTCCCCATAAAAAC 59.229 41.667 0.00 0.00 35.39 2.43
5811 7686 8.946085 CAACTCACTTGTAGGCTTGAATAAATA 58.054 33.333 0.00 0.00 0.00 1.40
6095 7970 6.807708 ACGTAGTATCATCAGTTTTAAGCG 57.192 37.500 0.00 0.00 41.94 4.68
6146 8029 7.823745 AAGTTCTAGTGGATGTCAAAACATT 57.176 32.000 0.00 0.00 46.20 2.71
6340 8223 7.129109 TGTTTTGTTTCTATCCTTGATCGTC 57.871 36.000 0.00 0.00 0.00 4.20
6695 8702 2.613026 AACATCGGCGGTTCATGATA 57.387 45.000 7.21 0.00 0.00 2.15
6737 8744 7.303261 GGATGATTGTAGACGATGAATACGTA 58.697 38.462 0.00 0.00 43.97 3.57
6926 8933 3.654414 ACAGCAGAGGTTTCGTTAGAAG 58.346 45.455 0.00 0.00 37.70 2.85
6955 8962 1.935199 CCTTTGTTTTGCTTGCAGGTG 59.065 47.619 0.00 0.00 0.00 4.00
7156 9163 2.633481 GGTAGAGCCCGATGGTAAGATT 59.367 50.000 0.00 0.00 0.00 2.40
7279 9286 3.251484 TGACTTCTCTTCAGGGTCCAAT 58.749 45.455 0.00 0.00 0.00 3.16
7287 9294 0.613260 TCAGGGTCCAATCTGGTTCG 59.387 55.000 0.00 0.00 39.03 3.95
7321 9328 6.148480 CCTGTAAAACCTCTCTGAATGTCTTG 59.852 42.308 0.00 0.00 0.00 3.02
7322 9329 6.591935 TGTAAAACCTCTCTGAATGTCTTGT 58.408 36.000 0.00 0.00 0.00 3.16
7323 9330 6.706270 TGTAAAACCTCTCTGAATGTCTTGTC 59.294 38.462 0.00 0.00 0.00 3.18
7324 9331 5.559148 AAACCTCTCTGAATGTCTTGTCT 57.441 39.130 0.00 0.00 0.00 3.41
7325 9332 4.799564 ACCTCTCTGAATGTCTTGTCTC 57.200 45.455 0.00 0.00 0.00 3.36
7449 9466 2.828520 ACAGTCTGTACATGAGACAGGG 59.171 50.000 23.32 17.64 43.76 4.45
7450 9467 1.827969 AGTCTGTACATGAGACAGGGC 59.172 52.381 23.32 18.22 43.76 5.19
7451 9468 1.550524 GTCTGTACATGAGACAGGGCA 59.449 52.381 23.32 9.28 43.76 5.36
7452 9469 1.827344 TCTGTACATGAGACAGGGCAG 59.173 52.381 23.32 10.16 43.76 4.85
7453 9470 0.904649 TGTACATGAGACAGGGCAGG 59.095 55.000 0.00 0.00 0.00 4.85
7454 9471 0.179000 GTACATGAGACAGGGCAGGG 59.821 60.000 0.00 0.00 0.00 4.45
7519 9552 4.128643 CACAGCCATTTTTCATTTGGTGT 58.871 39.130 0.00 0.00 32.90 4.16
7557 9590 2.294512 CCAGCTCTTCCCACAGAAAAAC 59.705 50.000 0.00 0.00 32.88 2.43
7559 9592 2.091885 AGCTCTTCCCACAGAAAAACCA 60.092 45.455 0.00 0.00 32.88 3.67
7560 9593 2.294512 GCTCTTCCCACAGAAAAACCAG 59.705 50.000 0.00 0.00 32.88 4.00
7562 9595 1.341209 CTTCCCACAGAAAAACCAGGC 59.659 52.381 0.00 0.00 32.88 4.85
7563 9596 0.260230 TCCCACAGAAAAACCAGGCA 59.740 50.000 0.00 0.00 0.00 4.75
7564 9597 1.118838 CCCACAGAAAAACCAGGCAA 58.881 50.000 0.00 0.00 0.00 4.52
7567 9600 3.604582 CCACAGAAAAACCAGGCAAAAA 58.395 40.909 0.00 0.00 0.00 1.94
7570 9603 3.258228 CAGAAAAACCAGGCAAAAACGT 58.742 40.909 0.00 0.00 0.00 3.99
7573 9606 1.364721 AAACCAGGCAAAAACGTTGC 58.635 45.000 0.00 0.83 44.22 4.17
7574 9607 0.247736 AACCAGGCAAAAACGTTGCA 59.752 45.000 12.42 0.00 46.58 4.08
7575 9608 0.247736 ACCAGGCAAAAACGTTGCAA 59.752 45.000 12.42 0.00 46.58 4.08
7576 9609 0.929615 CCAGGCAAAAACGTTGCAAG 59.070 50.000 12.42 4.27 46.58 4.01
7612 9699 3.257561 CTCGTCGCTCCATTGCCG 61.258 66.667 0.00 0.00 0.00 5.69
7616 9703 4.838152 TCGCTCCATTGCCGCTCC 62.838 66.667 0.00 0.00 0.00 4.70
7618 9705 3.512516 GCTCCATTGCCGCTCCAC 61.513 66.667 0.00 0.00 0.00 4.02
7619 9706 2.825836 CTCCATTGCCGCTCCACC 60.826 66.667 0.00 0.00 0.00 4.61
7658 9745 1.301677 CTGGAAAGCTCCTGCGGAAC 61.302 60.000 0.00 0.00 42.94 3.62
7664 9751 1.078143 GCTCCTGCGGAACCTCATT 60.078 57.895 0.00 0.00 0.00 2.57
7665 9752 0.678048 GCTCCTGCGGAACCTCATTT 60.678 55.000 0.00 0.00 0.00 2.32
7666 9753 1.373570 CTCCTGCGGAACCTCATTTC 58.626 55.000 0.00 0.00 0.00 2.17
7717 9804 9.850198 TTTTTACCTGTGTAAAGTGTAGGTTAT 57.150 29.630 0.00 0.00 45.15 1.89
7718 9805 9.850198 TTTTACCTGTGTAAAGTGTAGGTTATT 57.150 29.630 0.00 0.00 45.15 1.40
7719 9806 8.836268 TTACCTGTGTAAAGTGTAGGTTATTG 57.164 34.615 0.00 0.00 41.67 1.90
7720 9807 7.069877 ACCTGTGTAAAGTGTAGGTTATTGA 57.930 36.000 0.00 0.00 38.56 2.57
7721 9808 7.686434 ACCTGTGTAAAGTGTAGGTTATTGAT 58.314 34.615 0.00 0.00 38.56 2.57
7722 9809 8.161425 ACCTGTGTAAAGTGTAGGTTATTGATT 58.839 33.333 0.00 0.00 38.56 2.57
7723 9810 8.665685 CCTGTGTAAAGTGTAGGTTATTGATTC 58.334 37.037 0.00 0.00 0.00 2.52
7724 9811 9.436957 CTGTGTAAAGTGTAGGTTATTGATTCT 57.563 33.333 0.00 0.00 0.00 2.40
7731 9818 9.668497 AAGTGTAGGTTATTGATTCTAAAGTCC 57.332 33.333 0.00 0.00 0.00 3.85
7732 9819 9.047947 AGTGTAGGTTATTGATTCTAAAGTCCT 57.952 33.333 0.00 0.00 0.00 3.85
7742 9829 7.827819 TGATTCTAAAGTCCTAATGTCGTTG 57.172 36.000 0.00 0.00 0.00 4.10
7743 9830 6.816640 TGATTCTAAAGTCCTAATGTCGTTGG 59.183 38.462 0.00 0.00 0.00 3.77
7744 9831 5.080969 TCTAAAGTCCTAATGTCGTTGGG 57.919 43.478 0.70 0.70 39.68 4.12
7745 9832 3.782656 AAAGTCCTAATGTCGTTGGGT 57.217 42.857 7.04 0.00 39.36 4.51
7746 9833 2.762535 AGTCCTAATGTCGTTGGGTG 57.237 50.000 7.04 0.00 39.36 4.61
7747 9834 1.278127 AGTCCTAATGTCGTTGGGTGG 59.722 52.381 7.04 0.00 39.36 4.61
7748 9835 0.035820 TCCTAATGTCGTTGGGTGGC 60.036 55.000 7.04 0.00 39.36 5.01
7749 9836 0.322098 CCTAATGTCGTTGGGTGGCA 60.322 55.000 0.00 0.00 33.97 4.92
7750 9837 1.529226 CTAATGTCGTTGGGTGGCAA 58.471 50.000 0.00 0.00 0.00 4.52
7751 9838 2.091541 CTAATGTCGTTGGGTGGCAAT 58.908 47.619 0.00 0.00 0.00 3.56
7752 9839 0.602562 AATGTCGTTGGGTGGCAATG 59.397 50.000 0.00 0.00 0.00 2.82
7753 9840 1.250154 ATGTCGTTGGGTGGCAATGG 61.250 55.000 0.00 0.00 0.00 3.16
7754 9841 2.988684 TCGTTGGGTGGCAATGGC 60.989 61.111 0.00 0.00 40.13 4.40
7755 9842 3.301554 CGTTGGGTGGCAATGGCA 61.302 61.111 5.05 5.05 43.71 4.92
7756 9843 2.648143 CGTTGGGTGGCAATGGCAT 61.648 57.895 13.81 0.00 43.71 4.40
7757 9844 1.078988 GTTGGGTGGCAATGGCATG 60.079 57.895 13.81 0.00 43.71 4.06
7758 9845 2.957080 TTGGGTGGCAATGGCATGC 61.957 57.895 13.81 9.90 45.67 4.06
7764 9851 4.806571 GCAATGGCATGCAGTCAG 57.193 55.556 21.36 6.03 45.70 3.51
7765 9852 1.888018 GCAATGGCATGCAGTCAGT 59.112 52.632 21.36 4.66 45.70 3.41
7766 9853 1.097232 GCAATGGCATGCAGTCAGTA 58.903 50.000 21.36 0.00 45.70 2.74
7767 9854 1.679680 GCAATGGCATGCAGTCAGTAT 59.320 47.619 21.36 0.00 45.70 2.12
7768 9855 2.543031 GCAATGGCATGCAGTCAGTATG 60.543 50.000 21.36 9.94 45.70 2.39
7777 9864 3.127081 GCAGTCAGTATGCATGTTGTG 57.873 47.619 10.16 4.29 43.31 3.33
7778 9865 2.485426 GCAGTCAGTATGCATGTTGTGT 59.515 45.455 10.16 0.00 43.31 3.72
7779 9866 3.058016 GCAGTCAGTATGCATGTTGTGTT 60.058 43.478 10.16 0.00 43.31 3.32
7780 9867 4.557296 GCAGTCAGTATGCATGTTGTGTTT 60.557 41.667 10.16 0.00 43.31 2.83
7781 9868 4.913345 CAGTCAGTATGCATGTTGTGTTTG 59.087 41.667 10.16 2.60 34.76 2.93
7782 9869 4.821260 AGTCAGTATGCATGTTGTGTTTGA 59.179 37.500 10.16 0.00 34.76 2.69
7783 9870 5.299028 AGTCAGTATGCATGTTGTGTTTGAA 59.701 36.000 10.16 0.00 34.76 2.69
7784 9871 6.016024 AGTCAGTATGCATGTTGTGTTTGAAT 60.016 34.615 10.16 0.00 34.76 2.57
7785 9872 6.642131 GTCAGTATGCATGTTGTGTTTGAATT 59.358 34.615 10.16 0.00 34.76 2.17
7786 9873 7.807433 GTCAGTATGCATGTTGTGTTTGAATTA 59.193 33.333 10.16 0.00 34.76 1.40
7787 9874 8.022550 TCAGTATGCATGTTGTGTTTGAATTAG 58.977 33.333 10.16 0.00 34.76 1.73
7788 9875 7.809331 CAGTATGCATGTTGTGTTTGAATTAGT 59.191 33.333 10.16 0.00 0.00 2.24
7789 9876 8.359642 AGTATGCATGTTGTGTTTGAATTAGTT 58.640 29.630 10.16 0.00 0.00 2.24
7790 9877 9.619316 GTATGCATGTTGTGTTTGAATTAGTTA 57.381 29.630 10.16 0.00 0.00 2.24
7791 9878 7.922505 TGCATGTTGTGTTTGAATTAGTTAC 57.077 32.000 0.00 0.00 0.00 2.50
7792 9879 6.634837 TGCATGTTGTGTTTGAATTAGTTACG 59.365 34.615 0.00 0.00 0.00 3.18
7793 9880 6.635239 GCATGTTGTGTTTGAATTAGTTACGT 59.365 34.615 0.00 0.00 0.00 3.57
7794 9881 7.799447 GCATGTTGTGTTTGAATTAGTTACGTA 59.201 33.333 0.00 0.00 0.00 3.57
7795 9882 9.313323 CATGTTGTGTTTGAATTAGTTACGTAG 57.687 33.333 0.00 0.00 0.00 3.51
7796 9883 7.346695 TGTTGTGTTTGAATTAGTTACGTAGC 58.653 34.615 0.48 0.48 0.00 3.58
7797 9884 7.225145 TGTTGTGTTTGAATTAGTTACGTAGCT 59.775 33.333 16.45 16.45 0.00 3.32
7798 9885 8.702438 GTTGTGTTTGAATTAGTTACGTAGCTA 58.298 33.333 14.36 14.36 0.00 3.32
7799 9886 8.231304 TGTGTTTGAATTAGTTACGTAGCTAC 57.769 34.615 17.51 14.19 0.00 3.58
7812 9899 3.423571 CGTAGCTACGTACAAAGTGAGG 58.576 50.000 32.96 5.26 44.13 3.86
7813 9900 3.125829 CGTAGCTACGTACAAAGTGAGGA 59.874 47.826 32.96 0.00 44.13 3.71
7814 9901 4.201891 CGTAGCTACGTACAAAGTGAGGAT 60.202 45.833 32.96 0.00 44.13 3.24
7815 9902 4.803098 AGCTACGTACAAAGTGAGGATT 57.197 40.909 0.00 0.00 0.00 3.01
7816 9903 5.148651 AGCTACGTACAAAGTGAGGATTT 57.851 39.130 0.00 0.00 0.00 2.17
7817 9904 5.548406 AGCTACGTACAAAGTGAGGATTTT 58.452 37.500 0.00 0.00 0.00 1.82
7818 9905 5.638234 AGCTACGTACAAAGTGAGGATTTTC 59.362 40.000 0.00 0.00 0.00 2.29
7819 9906 5.407387 GCTACGTACAAAGTGAGGATTTTCA 59.593 40.000 0.00 0.00 0.00 2.69
7820 9907 5.668558 ACGTACAAAGTGAGGATTTTCAC 57.331 39.130 0.00 0.00 46.14 3.18
7821 9908 4.514066 ACGTACAAAGTGAGGATTTTCACC 59.486 41.667 2.76 0.00 46.81 4.02
7822 9909 4.513692 CGTACAAAGTGAGGATTTTCACCA 59.486 41.667 2.76 0.00 46.81 4.17
7823 9910 5.008217 CGTACAAAGTGAGGATTTTCACCAA 59.992 40.000 2.76 0.00 46.81 3.67
7824 9911 5.262588 ACAAAGTGAGGATTTTCACCAAC 57.737 39.130 2.76 0.00 46.81 3.77
7850 9937 1.947456 AGTTTGACAAGCCGGAGTTTC 59.053 47.619 5.05 0.00 0.00 2.78
7877 9964 2.341846 TTCTTGGTCGCCAAAGAGTT 57.658 45.000 11.56 0.00 43.44 3.01
7878 9965 2.341846 TCTTGGTCGCCAAAGAGTTT 57.658 45.000 11.56 0.00 43.44 2.66
7879 9966 3.478857 TCTTGGTCGCCAAAGAGTTTA 57.521 42.857 11.56 0.00 43.44 2.01
7883 9970 2.158726 TGGTCGCCAAAGAGTTTACCTT 60.159 45.455 0.00 0.00 0.00 3.50
7889 9976 4.274950 CGCCAAAGAGTTTACCTTCAAAGA 59.725 41.667 0.00 0.00 0.00 2.52
7898 9985 9.416284 AGAGTTTACCTTCAAAGAAAACCAATA 57.584 29.630 12.88 0.00 34.77 1.90
7899 9986 9.459640 GAGTTTACCTTCAAAGAAAACCAATAC 57.540 33.333 12.88 0.00 34.77 1.89
7900 9987 8.132995 AGTTTACCTTCAAAGAAAACCAATACG 58.867 33.333 12.88 0.00 34.77 3.06
7901 9988 7.571080 TTACCTTCAAAGAAAACCAATACGT 57.429 32.000 0.00 0.00 0.00 3.57
7917 10004 8.791355 ACCAATACGTAACAAAAATCTGAAAC 57.209 30.769 0.00 0.00 0.00 2.78
7925 10012 5.070770 ACAAAAATCTGAAACTGTGCACA 57.929 34.783 20.37 20.37 0.00 4.57
7954 10041 2.672961 TCACGAATGGAAGCTGGTAG 57.327 50.000 0.00 0.00 0.00 3.18
7994 10319 3.498397 AGTTCACTGCAATTAGTCCAACG 59.502 43.478 0.00 0.00 30.81 4.10
8004 10329 5.563867 GCAATTAGTCCAACGACAATCCAAA 60.564 40.000 0.00 0.00 41.87 3.28
8038 10367 5.583854 CCTCTTCAGTGTATTCATTGTCTGG 59.416 44.000 0.00 0.00 33.83 3.86
8059 10388 0.392461 TCTGCCGGGTTGTAATCTGC 60.392 55.000 2.18 0.00 0.00 4.26
8099 10428 2.909662 CCCTTCCTCTTCTTCCTCTTGT 59.090 50.000 0.00 0.00 0.00 3.16
8123 10452 7.445402 TGTTCTTCTTCTACCTCTTTTTCATGG 59.555 37.037 0.00 0.00 0.00 3.66
8189 10518 6.198650 TCATCAACAATGTCATCATTCCAC 57.801 37.500 0.00 0.00 41.66 4.02
8190 10519 5.947566 TCATCAACAATGTCATCATTCCACT 59.052 36.000 0.00 0.00 41.66 4.00
8191 10520 6.434965 TCATCAACAATGTCATCATTCCACTT 59.565 34.615 0.00 0.00 41.66 3.16
8192 10521 6.258230 TCAACAATGTCATCATTCCACTTC 57.742 37.500 0.00 0.00 41.66 3.01
8193 10522 6.005823 TCAACAATGTCATCATTCCACTTCT 58.994 36.000 0.00 0.00 41.66 2.85
8194 10523 6.149973 TCAACAATGTCATCATTCCACTTCTC 59.850 38.462 0.00 0.00 41.66 2.87
8195 10524 5.813383 ACAATGTCATCATTCCACTTCTCT 58.187 37.500 0.00 0.00 41.66 3.10
8196 10525 6.243900 ACAATGTCATCATTCCACTTCTCTT 58.756 36.000 0.00 0.00 41.66 2.85
8197 10526 6.373774 ACAATGTCATCATTCCACTTCTCTTC 59.626 38.462 0.00 0.00 41.66 2.87
8198 10527 5.752036 TGTCATCATTCCACTTCTCTTCT 57.248 39.130 0.00 0.00 0.00 2.85
8199 10528 5.728471 TGTCATCATTCCACTTCTCTTCTC 58.272 41.667 0.00 0.00 0.00 2.87
8200 10529 5.115480 GTCATCATTCCACTTCTCTTCTCC 58.885 45.833 0.00 0.00 0.00 3.71
8201 10530 5.028802 TCATCATTCCACTTCTCTTCTCCT 58.971 41.667 0.00 0.00 0.00 3.69
8202 10531 5.128499 TCATCATTCCACTTCTCTTCTCCTC 59.872 44.000 0.00 0.00 0.00 3.71
8212 10541 6.209391 CACTTCTCTTCTCCTCTTTCTCTTCT 59.791 42.308 0.00 0.00 0.00 2.85
8216 10545 6.434028 TCTCTTCTCCTCTTTCTCTTCTTCTG 59.566 42.308 0.00 0.00 0.00 3.02
8231 10560 1.664659 CTTCTGCCTCTTCTTCATGCG 59.335 52.381 0.00 0.00 0.00 4.73
8232 10561 0.107993 TCTGCCTCTTCTTCATGCGG 60.108 55.000 0.00 0.00 0.00 5.69
8233 10562 1.078214 TGCCTCTTCTTCATGCGGG 60.078 57.895 0.00 0.00 0.00 6.13
8234 10563 1.078143 GCCTCTTCTTCATGCGGGT 60.078 57.895 0.00 0.00 0.00 5.28
8235 10564 0.678048 GCCTCTTCTTCATGCGGGTT 60.678 55.000 0.00 0.00 0.00 4.11
8236 10565 1.089920 CCTCTTCTTCATGCGGGTTG 58.910 55.000 0.00 0.00 0.00 3.77
8237 10566 1.611673 CCTCTTCTTCATGCGGGTTGT 60.612 52.381 0.00 0.00 0.00 3.32
8238 10567 2.354704 CCTCTTCTTCATGCGGGTTGTA 60.355 50.000 0.00 0.00 0.00 2.41
8239 10568 3.334691 CTCTTCTTCATGCGGGTTGTAA 58.665 45.455 0.00 0.00 0.00 2.41
8240 10569 3.941483 CTCTTCTTCATGCGGGTTGTAAT 59.059 43.478 0.00 0.00 0.00 1.89
8241 10570 3.938963 TCTTCTTCATGCGGGTTGTAATC 59.061 43.478 0.00 0.00 0.00 1.75
8242 10571 3.627395 TCTTCATGCGGGTTGTAATCT 57.373 42.857 0.00 0.00 0.00 2.40
8243 10572 3.270027 TCTTCATGCGGGTTGTAATCTG 58.730 45.455 0.00 0.00 0.00 2.90
8244 10573 2.036958 TCATGCGGGTTGTAATCTGG 57.963 50.000 0.00 0.00 0.00 3.86
8245 10574 1.557371 TCATGCGGGTTGTAATCTGGA 59.443 47.619 0.00 0.00 0.00 3.86
8246 10575 2.172505 TCATGCGGGTTGTAATCTGGAT 59.827 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 173 3.781307 TTCAGGTCGGCCGGGATG 61.781 66.667 27.83 20.46 40.50 3.51
156 174 3.782443 GTTCAGGTCGGCCGGGAT 61.782 66.667 27.83 8.34 40.50 3.85
159 177 4.760047 CAGGTTCAGGTCGGCCGG 62.760 72.222 27.83 9.38 40.50 6.13
202 249 1.452145 CGAGTGGTTGGGTTGGGTTG 61.452 60.000 0.00 0.00 0.00 3.77
203 250 1.152839 CGAGTGGTTGGGTTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
204 251 2.513895 CGAGTGGTTGGGTTGGGT 59.486 61.111 0.00 0.00 0.00 4.51
205 252 2.983592 GCGAGTGGTTGGGTTGGG 60.984 66.667 0.00 0.00 0.00 4.12
206 253 3.353836 CGCGAGTGGTTGGGTTGG 61.354 66.667 0.00 0.00 0.00 3.77
227 284 4.803426 CCAGGGTCGCTCGCTCAC 62.803 72.222 0.00 0.00 37.22 3.51
352 409 1.154112 GCCGTGCGTTTTATGGTGG 60.154 57.895 0.00 0.00 0.00 4.61
353 410 0.039978 TTGCCGTGCGTTTTATGGTG 60.040 50.000 0.00 0.00 0.00 4.17
354 411 0.039888 GTTGCCGTGCGTTTTATGGT 60.040 50.000 0.00 0.00 0.00 3.55
376 433 3.305131 GGTTAGAAACGGCTTTTTCCTGG 60.305 47.826 6.88 0.00 36.31 4.45
450 508 3.623960 CGAACTGTGGTGGAGTGTTTTAA 59.376 43.478 0.00 0.00 0.00 1.52
452 510 2.014128 CGAACTGTGGTGGAGTGTTTT 58.986 47.619 0.00 0.00 0.00 2.43
456 514 1.217882 GAACGAACTGTGGTGGAGTG 58.782 55.000 0.00 0.00 0.00 3.51
457 515 0.249322 CGAACGAACTGTGGTGGAGT 60.249 55.000 0.00 0.00 0.00 3.85
458 516 0.031585 TCGAACGAACTGTGGTGGAG 59.968 55.000 0.00 0.00 0.00 3.86
459 517 0.031585 CTCGAACGAACTGTGGTGGA 59.968 55.000 0.00 0.00 0.00 4.02
460 518 0.249322 ACTCGAACGAACTGTGGTGG 60.249 55.000 0.00 0.00 0.00 4.61
461 519 1.521423 GAACTCGAACGAACTGTGGTG 59.479 52.381 0.00 0.00 0.00 4.17
462 520 1.135527 TGAACTCGAACGAACTGTGGT 59.864 47.619 0.00 0.00 0.00 4.16
463 521 1.847818 TGAACTCGAACGAACTGTGG 58.152 50.000 0.00 0.00 0.00 4.17
464 522 5.763444 AATATGAACTCGAACGAACTGTG 57.237 39.130 0.00 0.00 0.00 3.66
465 523 6.780706 AAAATATGAACTCGAACGAACTGT 57.219 33.333 0.00 0.00 0.00 3.55
466 524 7.287950 TGAAAAATATGAACTCGAACGAACTG 58.712 34.615 0.00 0.00 0.00 3.16
467 525 7.416154 TGAAAAATATGAACTCGAACGAACT 57.584 32.000 0.00 0.00 0.00 3.01
468 526 8.169268 AGATGAAAAATATGAACTCGAACGAAC 58.831 33.333 0.00 0.00 0.00 3.95
481 568 7.377928 GCAGATCAACCGAAGATGAAAAATATG 59.622 37.037 0.00 0.00 0.00 1.78
483 570 6.374053 TGCAGATCAACCGAAGATGAAAAATA 59.626 34.615 0.00 0.00 0.00 1.40
488 575 3.264947 CTGCAGATCAACCGAAGATGAA 58.735 45.455 8.42 0.00 0.00 2.57
489 576 2.897436 CTGCAGATCAACCGAAGATGA 58.103 47.619 8.42 0.00 0.00 2.92
490 577 1.329906 GCTGCAGATCAACCGAAGATG 59.670 52.381 20.43 0.00 0.00 2.90
491 578 1.209019 AGCTGCAGATCAACCGAAGAT 59.791 47.619 20.43 0.00 0.00 2.40
492 579 0.610174 AGCTGCAGATCAACCGAAGA 59.390 50.000 20.43 0.00 0.00 2.87
495 582 1.742880 GCAGCTGCAGATCAACCGA 60.743 57.895 33.36 0.00 41.59 4.69
496 583 2.789917 GCAGCTGCAGATCAACCG 59.210 61.111 33.36 0.00 41.59 4.44
544 671 1.480137 ACAGAGGCTCCGAAGATTCAG 59.520 52.381 11.71 0.00 0.00 3.02
575 702 1.821136 CCATGAAAAAGAGGCTCCACC 59.179 52.381 11.71 0.00 39.61 4.61
576 703 2.795329 TCCATGAAAAAGAGGCTCCAC 58.205 47.619 11.71 0.00 0.00 4.02
577 704 3.245371 ACATCCATGAAAAAGAGGCTCCA 60.245 43.478 11.71 1.44 0.00 3.86
578 705 3.359950 ACATCCATGAAAAAGAGGCTCC 58.640 45.455 11.71 0.00 0.00 4.70
579 706 5.649831 AGTTACATCCATGAAAAAGAGGCTC 59.350 40.000 6.34 6.34 0.00 4.70
580 707 5.416952 CAGTTACATCCATGAAAAAGAGGCT 59.583 40.000 0.00 0.00 0.00 4.58
581 708 5.183904 ACAGTTACATCCATGAAAAAGAGGC 59.816 40.000 0.00 0.00 0.00 4.70
582 709 6.656693 AGACAGTTACATCCATGAAAAAGAGG 59.343 38.462 0.00 0.00 0.00 3.69
583 710 7.412346 CGAGACAGTTACATCCATGAAAAAGAG 60.412 40.741 0.00 0.00 0.00 2.85
584 711 6.368791 CGAGACAGTTACATCCATGAAAAAGA 59.631 38.462 0.00 0.00 0.00 2.52
585 712 6.402550 CCGAGACAGTTACATCCATGAAAAAG 60.403 42.308 0.00 0.00 0.00 2.27
586 713 5.411361 CCGAGACAGTTACATCCATGAAAAA 59.589 40.000 0.00 0.00 0.00 1.94
587 714 4.935205 CCGAGACAGTTACATCCATGAAAA 59.065 41.667 0.00 0.00 0.00 2.29
591 718 3.801114 TCCGAGACAGTTACATCCATG 57.199 47.619 0.00 0.00 0.00 3.66
595 722 6.042777 TGATTCATTCCGAGACAGTTACATC 58.957 40.000 0.00 0.00 0.00 3.06
597 724 5.400066 TGATTCATTCCGAGACAGTTACA 57.600 39.130 0.00 0.00 0.00 2.41
606 733 2.357009 CCTTGCCTTGATTCATTCCGAG 59.643 50.000 0.00 0.00 0.00 4.63
619 746 0.468029 CCAACACACCTCCTTGCCTT 60.468 55.000 0.00 0.00 0.00 4.35
624 751 1.052124 TCGACCCAACACACCTCCTT 61.052 55.000 0.00 0.00 0.00 3.36
629 756 0.883370 GTTCCTCGACCCAACACACC 60.883 60.000 0.00 0.00 0.00 4.16
630 757 0.179067 TGTTCCTCGACCCAACACAC 60.179 55.000 0.00 0.00 0.00 3.82
631 758 0.762418 ATGTTCCTCGACCCAACACA 59.238 50.000 2.07 0.00 32.96 3.72
632 759 1.892209 AATGTTCCTCGACCCAACAC 58.108 50.000 2.07 0.00 32.96 3.32
633 760 2.649531 AAATGTTCCTCGACCCAACA 57.350 45.000 2.45 2.45 34.61 3.33
634 761 3.316868 TGAAAAATGTTCCTCGACCCAAC 59.683 43.478 0.00 0.00 0.00 3.77
635 762 3.556999 TGAAAAATGTTCCTCGACCCAA 58.443 40.909 0.00 0.00 0.00 4.12
636 763 3.216187 TGAAAAATGTTCCTCGACCCA 57.784 42.857 0.00 0.00 0.00 4.51
637 764 3.673323 GCATGAAAAATGTTCCTCGACCC 60.673 47.826 0.00 0.00 0.00 4.46
638 765 3.057596 TGCATGAAAAATGTTCCTCGACC 60.058 43.478 0.00 0.00 0.00 4.79
639 766 4.159377 TGCATGAAAAATGTTCCTCGAC 57.841 40.909 0.00 0.00 0.00 4.20
640 767 3.366273 GCTGCATGAAAAATGTTCCTCGA 60.366 43.478 0.00 0.00 0.00 4.04
641 768 2.919229 GCTGCATGAAAAATGTTCCTCG 59.081 45.455 0.00 0.00 0.00 4.63
642 769 3.256558 GGCTGCATGAAAAATGTTCCTC 58.743 45.455 0.50 0.00 0.00 3.71
643 770 2.027837 GGGCTGCATGAAAAATGTTCCT 60.028 45.455 0.50 0.00 0.00 3.36
644 771 2.349590 GGGCTGCATGAAAAATGTTCC 58.650 47.619 0.50 0.00 0.00 3.62
645 772 2.349590 GGGGCTGCATGAAAAATGTTC 58.650 47.619 0.50 0.00 0.00 3.18
646 773 1.003464 GGGGGCTGCATGAAAAATGTT 59.997 47.619 0.50 0.00 0.00 2.71
647 774 0.614812 GGGGGCTGCATGAAAAATGT 59.385 50.000 0.50 0.00 0.00 2.71
648 775 0.906775 AGGGGGCTGCATGAAAAATG 59.093 50.000 0.50 0.00 0.00 2.32
649 776 1.660242 AAGGGGGCTGCATGAAAAAT 58.340 45.000 0.50 0.00 0.00 1.82
650 777 1.072015 CAAAGGGGGCTGCATGAAAAA 59.928 47.619 0.50 0.00 0.00 1.94
661 788 3.677480 TATGGGCAGCAAAGGGGGC 62.677 63.158 0.00 0.00 0.00 5.80
666 793 6.319658 TCTTCTTATCTTTATGGGCAGCAAAG 59.680 38.462 0.00 0.00 0.00 2.77
669 796 5.372343 TCTTCTTATCTTTATGGGCAGCA 57.628 39.130 0.00 0.00 0.00 4.41
670 797 6.699575 TTTCTTCTTATCTTTATGGGCAGC 57.300 37.500 0.00 0.00 0.00 5.25
671 798 7.308229 CCGATTTCTTCTTATCTTTATGGGCAG 60.308 40.741 0.00 0.00 0.00 4.85
682 810 4.442706 TCCACTGCCGATTTCTTCTTATC 58.557 43.478 0.00 0.00 0.00 1.75
687 815 1.128692 CGTTCCACTGCCGATTTCTTC 59.871 52.381 0.00 0.00 0.00 2.87
688 816 1.156736 CGTTCCACTGCCGATTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
689 817 0.034896 ACGTTCCACTGCCGATTTCT 59.965 50.000 0.00 0.00 0.00 2.52
705 833 2.406596 ATAACGCATGGGGTTTACGT 57.593 45.000 14.94 0.00 39.36 3.57
730 858 6.800408 GGTTTTACTTTTCGCCAGAGAAATAC 59.200 38.462 0.00 0.00 39.52 1.89
774 944 1.819632 GGATCTCGGCGTTGGCAAT 60.820 57.895 6.85 0.00 42.47 3.56
775 945 2.435938 GGATCTCGGCGTTGGCAA 60.436 61.111 6.85 0.00 42.47 4.52
870 1041 3.489513 GGGATTCCGGTGGGGGAG 61.490 72.222 0.00 0.00 37.40 4.30
943 1130 2.764314 CGGCCAGCTTGAAATCGGG 61.764 63.158 2.24 0.00 0.00 5.14
2000 2189 9.495572 AAACTAGGAAGTGAAGTGAAATTAGAG 57.504 33.333 0.00 0.00 35.62 2.43
2004 2193 7.060421 TCCAAACTAGGAAGTGAAGTGAAATT 58.940 34.615 0.00 0.00 35.62 1.82
2005 2194 6.601332 TCCAAACTAGGAAGTGAAGTGAAAT 58.399 36.000 0.00 0.00 35.62 2.17
2006 2195 5.996644 TCCAAACTAGGAAGTGAAGTGAAA 58.003 37.500 0.00 0.00 35.62 2.69
2008 2197 5.825593 ATCCAAACTAGGAAGTGAAGTGA 57.174 39.130 0.00 0.00 41.92 3.41
2009 2198 5.582665 GCTATCCAAACTAGGAAGTGAAGTG 59.417 44.000 0.00 0.00 41.92 3.16
2011 2200 5.119694 GGCTATCCAAACTAGGAAGTGAAG 58.880 45.833 0.00 0.00 41.92 3.02
2018 2208 1.679680 CGACGGCTATCCAAACTAGGA 59.320 52.381 0.00 0.00 43.01 2.94
2109 2300 5.570320 ACCTGCGCAATAATAAATCCCTAT 58.430 37.500 13.05 0.00 0.00 2.57
2110 2301 4.980573 ACCTGCGCAATAATAAATCCCTA 58.019 39.130 13.05 0.00 0.00 3.53
2111 2302 3.832527 ACCTGCGCAATAATAAATCCCT 58.167 40.909 13.05 0.00 0.00 4.20
2112 2303 4.298332 CAACCTGCGCAATAATAAATCCC 58.702 43.478 13.05 0.00 0.00 3.85
2125 2316 2.023223 CAAATGCACCAACCTGCGC 61.023 57.895 0.00 0.00 40.31 6.09
2219 2410 8.657074 TTCATTGTTACCCTCTATTACATTCG 57.343 34.615 0.00 0.00 0.00 3.34
2242 2434 6.073058 TGCAAGTCTGTAACAGTCATGAATTC 60.073 38.462 0.00 0.00 32.61 2.17
2246 2438 4.335400 TGCAAGTCTGTAACAGTCATGA 57.665 40.909 0.00 0.00 32.61 3.07
2247 2439 4.776743 GTTGCAAGTCTGTAACAGTCATG 58.223 43.478 0.00 0.00 44.80 3.07
2258 2450 4.481930 TCCGTTTATTGTTGCAAGTCTG 57.518 40.909 0.00 0.00 0.00 3.51
2300 2492 5.474876 CCATATATCCAGGTTCAGGCTTTTC 59.525 44.000 0.00 0.00 0.00 2.29
2374 2566 3.324993 GAGGTGTGAGCTCAGAAAAGAG 58.675 50.000 18.89 0.00 42.03 2.85
2382 2574 3.695606 GGCCGAGGTGTGAGCTCA 61.696 66.667 13.74 13.74 42.53 4.26
2426 2618 9.191995 CCTTTAATCGAAAAATTAAACTGTGCT 57.808 29.630 0.00 0.00 36.60 4.40
2443 2635 1.032014 CCATGTGGCCCCTTTAATCG 58.968 55.000 0.00 0.00 0.00 3.34
2546 2739 7.343357 TGACATAGAACCCCTTAAATAACAGG 58.657 38.462 0.00 0.00 0.00 4.00
2862 3057 8.820933 AGACACACATCATGATATTAAAGAACG 58.179 33.333 8.15 0.00 0.00 3.95
2941 3142 7.606456 TGACAGTGACCTCCTGATTTTATTTAC 59.394 37.037 0.00 0.00 34.04 2.01
2963 3164 5.702865 GCTTATTCTGAAAGCAACATGACA 58.297 37.500 0.00 0.00 46.85 3.58
3036 3237 4.635324 CCAAATGTGGCAAAACAAAAGAGT 59.365 37.500 0.00 0.00 38.35 3.24
3289 3490 6.687105 GCGTAGAGTAAAACATATTGGCAAAG 59.313 38.462 3.01 0.00 0.00 2.77
3312 3570 3.304559 CCTCGACTTCAACTTGATAAGCG 59.695 47.826 0.00 0.00 0.00 4.68
3614 3875 3.891977 AGATACGCTCCAGCTTTATCAGA 59.108 43.478 14.75 0.00 36.73 3.27
3656 3919 6.720112 ACATGATCATTTGGAACATTAGGG 57.280 37.500 5.16 0.00 36.95 3.53
3739 4002 6.607689 TGACATAAGCACAATTTAAAGACCG 58.392 36.000 0.00 0.00 0.00 4.79
3740 4003 7.593825 ACTGACATAAGCACAATTTAAAGACC 58.406 34.615 0.00 0.00 0.00 3.85
3749 4013 5.997746 ACACAAGTACTGACATAAGCACAAT 59.002 36.000 0.00 0.00 0.00 2.71
3773 4037 4.211125 TGTTAACCACTGCCAAGAATTCA 58.789 39.130 8.44 0.00 0.00 2.57
3774 4038 4.846779 TGTTAACCACTGCCAAGAATTC 57.153 40.909 2.48 0.00 0.00 2.17
3781 4045 9.860650 AGAATTAATATATGTTAACCACTGCCA 57.139 29.630 6.79 0.00 0.00 4.92
3912 4176 7.414222 AGATGTGGATTTATTGAACATTGCT 57.586 32.000 0.00 0.00 31.82 3.91
3986 4256 6.017770 CGTTGTTCCAAATAGTACAGGACAAA 60.018 38.462 0.00 0.00 0.00 2.83
4474 4757 1.008538 CCGACAGCAACAAAGGCAC 60.009 57.895 0.00 0.00 0.00 5.01
4861 5232 6.153340 TGGAAATTCATTCATTGGGAGAAGAC 59.847 38.462 0.00 0.00 39.98 3.01
4990 6802 4.083537 AGACGAGAATAGAATAGCGCTGAG 60.084 45.833 22.90 0.00 0.00 3.35
5159 6987 4.591321 AATATGGTAGGCATGTATGGGG 57.409 45.455 0.00 0.00 0.00 4.96
5285 7119 7.815068 CCCTGGTTCTATATCGAACTTCATTAG 59.185 40.741 16.95 8.20 42.20 1.73
5287 7121 6.464465 CCCCTGGTTCTATATCGAACTTCATT 60.464 42.308 16.95 0.00 42.20 2.57
5289 7123 4.344102 CCCCTGGTTCTATATCGAACTTCA 59.656 45.833 16.95 8.72 42.20 3.02
5395 7256 4.679373 AGCATAGGATTGTACAGGACAG 57.321 45.455 0.00 0.00 39.88 3.51
6146 8029 4.100189 GGGTTTCTCTAGCAAGCTATCTGA 59.900 45.833 1.74 0.00 0.00 3.27
6695 8702 6.989155 ATCATCCCTTTTGCATGAACATAT 57.011 33.333 0.00 0.00 30.43 1.78
6737 8744 0.755686 TGTTTGCCGAGCCCAAAATT 59.244 45.000 0.00 0.00 34.33 1.82
6915 8922 7.119553 ACAAAGGTTACAACACTTCTAACGAAA 59.880 33.333 0.00 0.00 0.00 3.46
6926 8933 5.670094 GCAAGCAAAACAAAGGTTACAACAC 60.670 40.000 0.00 0.00 35.82 3.32
7279 9286 0.468226 AGGTGAGCAAACGAACCAGA 59.532 50.000 0.00 0.00 35.01 3.86
7287 9294 3.883489 AGAGGTTTTACAGGTGAGCAAAC 59.117 43.478 0.00 0.00 0.00 2.93
7321 9328 1.996786 TTACCATCCGTCGGCGAGAC 61.997 60.000 12.93 0.00 46.16 3.36
7322 9329 1.105167 ATTACCATCCGTCGGCGAGA 61.105 55.000 12.93 7.09 41.33 4.04
7323 9330 0.663568 GATTACCATCCGTCGGCGAG 60.664 60.000 12.93 0.03 41.33 5.03
7324 9331 1.105167 AGATTACCATCCGTCGGCGA 61.105 55.000 12.93 4.99 41.33 5.54
7325 9332 0.939577 CAGATTACCATCCGTCGGCG 60.940 60.000 6.34 0.29 37.95 6.46
7449 9466 0.183492 TATCAATGACCCTGCCCTGC 59.817 55.000 0.00 0.00 0.00 4.85
7450 9467 1.492176 ACTATCAATGACCCTGCCCTG 59.508 52.381 0.00 0.00 0.00 4.45
7451 9468 1.898863 ACTATCAATGACCCTGCCCT 58.101 50.000 0.00 0.00 0.00 5.19
7452 9469 2.736670 AACTATCAATGACCCTGCCC 57.263 50.000 0.00 0.00 0.00 5.36
7453 9470 3.131046 CCAAAACTATCAATGACCCTGCC 59.869 47.826 0.00 0.00 0.00 4.85
7454 9471 4.016444 TCCAAAACTATCAATGACCCTGC 58.984 43.478 0.00 0.00 0.00 4.85
7501 9534 4.756135 ACATGACACCAAATGAAAAATGGC 59.244 37.500 0.00 0.00 37.77 4.40
7505 9538 7.173907 ACAAAACACATGACACCAAATGAAAAA 59.826 29.630 0.00 0.00 0.00 1.94
7519 9552 1.067364 CTGGCAGCACAAAACACATGA 59.933 47.619 0.00 0.00 0.00 3.07
7557 9590 0.929615 CTTGCAACGTTTTTGCCTGG 59.070 50.000 8.16 0.00 44.32 4.45
7559 9592 0.179086 CCCTTGCAACGTTTTTGCCT 60.179 50.000 8.16 0.00 44.32 4.75
7560 9593 1.771073 GCCCTTGCAACGTTTTTGCC 61.771 55.000 8.16 0.00 44.32 4.52
7562 9595 1.157257 GGGCCCTTGCAACGTTTTTG 61.157 55.000 17.04 0.00 40.13 2.44
7563 9596 1.145156 GGGCCCTTGCAACGTTTTT 59.855 52.632 17.04 0.00 40.13 1.94
7564 9597 2.802724 GGGGCCCTTGCAACGTTTT 61.803 57.895 24.38 0.00 40.13 2.43
7573 9606 4.410400 GAGTCACGGGGGCCCTTG 62.410 72.222 24.38 19.74 36.78 3.61
7574 9607 4.658786 AGAGTCACGGGGGCCCTT 62.659 66.667 24.38 7.02 0.00 3.95
7616 9703 4.156622 CATGCTGCTCACGCGGTG 62.157 66.667 12.47 6.71 44.55 4.94
7617 9704 4.377708 TCATGCTGCTCACGCGGT 62.378 61.111 12.47 0.00 44.55 5.68
7618 9705 3.857854 GTCATGCTGCTCACGCGG 61.858 66.667 12.47 0.00 45.53 6.46
7619 9706 4.200851 CGTCATGCTGCTCACGCG 62.201 66.667 3.53 3.53 39.65 6.01
7658 9745 2.733227 GCAGGTGCATTTCGAAATGAGG 60.733 50.000 41.10 27.57 46.72 3.86
7664 9751 0.527113 CATGGCAGGTGCATTTCGAA 59.473 50.000 4.01 0.00 44.36 3.71
7665 9752 1.936436 GCATGGCAGGTGCATTTCGA 61.936 55.000 8.15 0.00 44.36 3.71
7666 9753 1.517694 GCATGGCAGGTGCATTTCG 60.518 57.895 8.15 0.00 44.36 3.46
7693 9780 9.275398 CAATAACCTACACTTTACACAGGTAAA 57.725 33.333 0.00 0.00 44.88 2.01
7695 9782 8.192743 TCAATAACCTACACTTTACACAGGTA 57.807 34.615 0.00 0.00 38.67 3.08
7696 9783 7.069877 TCAATAACCTACACTTTACACAGGT 57.930 36.000 0.00 0.00 41.38 4.00
7697 9784 8.561738 AATCAATAACCTACACTTTACACAGG 57.438 34.615 0.00 0.00 0.00 4.00
7698 9785 9.436957 AGAATCAATAACCTACACTTTACACAG 57.563 33.333 0.00 0.00 0.00 3.66
7705 9792 9.668497 GGACTTTAGAATCAATAACCTACACTT 57.332 33.333 0.00 0.00 0.00 3.16
7706 9793 9.047947 AGGACTTTAGAATCAATAACCTACACT 57.952 33.333 0.00 0.00 0.00 3.55
7716 9803 8.883731 CAACGACATTAGGACTTTAGAATCAAT 58.116 33.333 0.00 0.00 0.00 2.57
7717 9804 7.333423 CCAACGACATTAGGACTTTAGAATCAA 59.667 37.037 0.00 0.00 0.00 2.57
7718 9805 6.816640 CCAACGACATTAGGACTTTAGAATCA 59.183 38.462 0.00 0.00 0.00 2.57
7719 9806 6.258068 CCCAACGACATTAGGACTTTAGAATC 59.742 42.308 0.00 0.00 0.00 2.52
7720 9807 6.113411 CCCAACGACATTAGGACTTTAGAAT 58.887 40.000 0.00 0.00 0.00 2.40
7721 9808 5.012354 ACCCAACGACATTAGGACTTTAGAA 59.988 40.000 0.00 0.00 0.00 2.10
7722 9809 4.529377 ACCCAACGACATTAGGACTTTAGA 59.471 41.667 0.00 0.00 0.00 2.10
7723 9810 4.630069 CACCCAACGACATTAGGACTTTAG 59.370 45.833 0.00 0.00 0.00 1.85
7724 9811 4.563993 CCACCCAACGACATTAGGACTTTA 60.564 45.833 0.00 0.00 0.00 1.85
7725 9812 3.408634 CACCCAACGACATTAGGACTTT 58.591 45.455 0.00 0.00 0.00 2.66
7726 9813 2.290071 CCACCCAACGACATTAGGACTT 60.290 50.000 0.00 0.00 0.00 3.01
7727 9814 1.278127 CCACCCAACGACATTAGGACT 59.722 52.381 0.00 0.00 0.00 3.85
7728 9815 1.734163 CCACCCAACGACATTAGGAC 58.266 55.000 0.00 0.00 0.00 3.85
7729 9816 0.035820 GCCACCCAACGACATTAGGA 60.036 55.000 0.00 0.00 0.00 2.94
7730 9817 0.322098 TGCCACCCAACGACATTAGG 60.322 55.000 0.00 0.00 0.00 2.69
7731 9818 1.529226 TTGCCACCCAACGACATTAG 58.471 50.000 0.00 0.00 0.00 1.73
7732 9819 1.815613 CATTGCCACCCAACGACATTA 59.184 47.619 0.00 0.00 35.99 1.90
7733 9820 0.602562 CATTGCCACCCAACGACATT 59.397 50.000 0.00 0.00 35.99 2.71
7734 9821 1.250154 CCATTGCCACCCAACGACAT 61.250 55.000 0.00 0.00 35.99 3.06
7735 9822 1.900981 CCATTGCCACCCAACGACA 60.901 57.895 0.00 0.00 35.99 4.35
7736 9823 2.961768 CCATTGCCACCCAACGAC 59.038 61.111 0.00 0.00 35.99 4.34
7737 9824 2.988684 GCCATTGCCACCCAACGA 60.989 61.111 0.00 0.00 35.99 3.85
7738 9825 2.648143 ATGCCATTGCCACCCAACG 61.648 57.895 0.00 0.00 35.99 4.10
7739 9826 1.078988 CATGCCATTGCCACCCAAC 60.079 57.895 0.00 0.00 35.99 3.77
7740 9827 2.957080 GCATGCCATTGCCACCCAA 61.957 57.895 6.36 0.00 36.60 4.12
7741 9828 3.392243 GCATGCCATTGCCACCCA 61.392 61.111 6.36 0.00 36.60 4.51
7742 9829 3.379865 CTGCATGCCATTGCCACCC 62.380 63.158 16.68 0.00 42.06 4.61
7743 9830 2.185867 CTGCATGCCATTGCCACC 59.814 61.111 16.68 0.00 42.06 4.61
7744 9831 1.153706 GACTGCATGCCATTGCCAC 60.154 57.895 16.68 0.00 42.06 5.01
7745 9832 1.600511 CTGACTGCATGCCATTGCCA 61.601 55.000 16.68 3.86 42.06 4.92
7746 9833 1.141019 CTGACTGCATGCCATTGCC 59.859 57.895 16.68 0.00 42.06 4.52
7747 9834 1.097232 TACTGACTGCATGCCATTGC 58.903 50.000 16.68 0.60 43.07 3.56
7748 9835 2.543031 GCATACTGACTGCATGCCATTG 60.543 50.000 16.68 5.41 39.03 2.82
7749 9836 1.679680 GCATACTGACTGCATGCCATT 59.320 47.619 16.68 2.86 39.03 3.16
7750 9837 1.315690 GCATACTGACTGCATGCCAT 58.684 50.000 16.68 2.19 39.03 4.40
7751 9838 0.035247 TGCATACTGACTGCATGCCA 60.035 50.000 16.68 4.99 44.30 4.92
7752 9839 2.784547 TGCATACTGACTGCATGCC 58.215 52.632 16.68 0.00 44.30 4.40
7757 9844 2.485426 ACACAACATGCATACTGACTGC 59.515 45.455 12.81 0.00 40.10 4.40
7758 9845 4.754372 AACACAACATGCATACTGACTG 57.246 40.909 12.81 5.56 0.00 3.51
7759 9846 4.821260 TCAAACACAACATGCATACTGACT 59.179 37.500 12.81 0.00 0.00 3.41
7760 9847 5.107109 TCAAACACAACATGCATACTGAC 57.893 39.130 12.81 0.00 0.00 3.51
7761 9848 5.764487 TTCAAACACAACATGCATACTGA 57.236 34.783 12.81 0.00 0.00 3.41
7762 9849 7.809331 ACTAATTCAAACACAACATGCATACTG 59.191 33.333 0.00 1.89 0.00 2.74
7763 9850 7.885297 ACTAATTCAAACACAACATGCATACT 58.115 30.769 0.00 0.00 0.00 2.12
7764 9851 8.519492 AACTAATTCAAACACAACATGCATAC 57.481 30.769 0.00 0.00 0.00 2.39
7765 9852 9.619316 GTAACTAATTCAAACACAACATGCATA 57.381 29.630 0.00 0.00 0.00 3.14
7766 9853 7.325821 CGTAACTAATTCAAACACAACATGCAT 59.674 33.333 0.00 0.00 0.00 3.96
7767 9854 6.634837 CGTAACTAATTCAAACACAACATGCA 59.365 34.615 0.00 0.00 0.00 3.96
7768 9855 6.635239 ACGTAACTAATTCAAACACAACATGC 59.365 34.615 0.00 0.00 0.00 4.06
7769 9856 9.313323 CTACGTAACTAATTCAAACACAACATG 57.687 33.333 0.00 0.00 0.00 3.21
7770 9857 8.013378 GCTACGTAACTAATTCAAACACAACAT 58.987 33.333 0.00 0.00 0.00 2.71
7771 9858 7.225145 AGCTACGTAACTAATTCAAACACAACA 59.775 33.333 0.00 0.00 0.00 3.33
7772 9859 7.570161 AGCTACGTAACTAATTCAAACACAAC 58.430 34.615 0.00 0.00 0.00 3.32
7773 9860 7.718272 AGCTACGTAACTAATTCAAACACAA 57.282 32.000 0.00 0.00 0.00 3.33
7774 9861 7.060979 CGTAGCTACGTAACTAATTCAAACACA 59.939 37.037 32.96 0.00 44.13 3.72
7775 9862 7.378804 CGTAGCTACGTAACTAATTCAAACAC 58.621 38.462 32.96 0.00 44.13 3.32
7776 9863 7.496704 CGTAGCTACGTAACTAATTCAAACA 57.503 36.000 32.96 0.00 44.13 2.83
7792 9879 4.691860 TCCTCACTTTGTACGTAGCTAC 57.308 45.455 14.19 14.19 0.00 3.58
7793 9880 5.909621 AATCCTCACTTTGTACGTAGCTA 57.090 39.130 0.00 0.00 0.00 3.32
7794 9881 4.803098 AATCCTCACTTTGTACGTAGCT 57.197 40.909 0.00 0.00 0.00 3.32
7795 9882 5.407387 TGAAAATCCTCACTTTGTACGTAGC 59.593 40.000 0.00 0.00 0.00 3.58
7796 9883 6.128634 GGTGAAAATCCTCACTTTGTACGTAG 60.129 42.308 0.00 0.00 44.33 3.51
7797 9884 5.697633 GGTGAAAATCCTCACTTTGTACGTA 59.302 40.000 0.00 0.00 44.33 3.57
7798 9885 4.514066 GGTGAAAATCCTCACTTTGTACGT 59.486 41.667 0.00 0.00 44.33 3.57
7799 9886 4.513692 TGGTGAAAATCCTCACTTTGTACG 59.486 41.667 3.94 0.00 44.33 3.67
7800 9887 6.206498 GTTGGTGAAAATCCTCACTTTGTAC 58.794 40.000 3.94 0.00 44.33 2.90
7801 9888 5.300792 GGTTGGTGAAAATCCTCACTTTGTA 59.699 40.000 3.94 0.00 44.33 2.41
7802 9889 4.099419 GGTTGGTGAAAATCCTCACTTTGT 59.901 41.667 3.94 0.00 44.33 2.83
7803 9890 4.501400 GGGTTGGTGAAAATCCTCACTTTG 60.501 45.833 3.94 0.00 44.33 2.77
7804 9891 3.641436 GGGTTGGTGAAAATCCTCACTTT 59.359 43.478 3.94 0.00 44.33 2.66
7805 9892 3.230976 GGGTTGGTGAAAATCCTCACTT 58.769 45.455 3.94 0.00 44.33 3.16
7806 9893 2.490902 GGGGTTGGTGAAAATCCTCACT 60.491 50.000 3.94 0.00 44.33 3.41
7807 9894 1.893137 GGGGTTGGTGAAAATCCTCAC 59.107 52.381 0.00 0.00 44.21 3.51
7808 9895 1.203125 GGGGGTTGGTGAAAATCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
7809 9896 1.557099 GGGGGTTGGTGAAAATCCTC 58.443 55.000 0.00 0.00 0.00 3.71
7810 9897 3.786495 GGGGGTTGGTGAAAATCCT 57.214 52.632 0.00 0.00 0.00 3.24
7850 9937 1.879380 TGGCGACCAAGAAATGAGTTG 59.121 47.619 0.00 0.00 0.00 3.16
7863 9950 2.180432 AGGTAAACTCTTTGGCGACC 57.820 50.000 0.00 0.00 0.00 4.79
7877 9964 7.571080 ACGTATTGGTTTTCTTTGAAGGTAA 57.429 32.000 0.00 0.00 0.00 2.85
7878 9965 8.558700 GTTACGTATTGGTTTTCTTTGAAGGTA 58.441 33.333 0.00 0.00 0.00 3.08
7879 9966 7.067251 TGTTACGTATTGGTTTTCTTTGAAGGT 59.933 33.333 0.00 0.00 0.00 3.50
7883 9970 9.635520 TTTTTGTTACGTATTGGTTTTCTTTGA 57.364 25.926 0.00 0.00 0.00 2.69
7889 9976 9.804758 TTCAGATTTTTGTTACGTATTGGTTTT 57.195 25.926 0.00 0.00 0.00 2.43
7898 9985 5.741982 GCACAGTTTCAGATTTTTGTTACGT 59.258 36.000 0.00 0.00 0.00 3.57
7899 9986 5.741510 TGCACAGTTTCAGATTTTTGTTACG 59.258 36.000 0.00 0.00 0.00 3.18
7900 9987 6.529829 TGTGCACAGTTTCAGATTTTTGTTAC 59.470 34.615 17.42 0.00 0.00 2.50
7901 9988 6.625362 TGTGCACAGTTTCAGATTTTTGTTA 58.375 32.000 17.42 0.00 0.00 2.41
7925 10012 6.203530 CAGCTTCCATTCGTGATACATGTAAT 59.796 38.462 10.14 0.00 0.00 1.89
7954 10041 1.270147 ACTCGTGACTTGTGTAAGCCC 60.270 52.381 0.00 0.00 37.43 5.19
7994 10319 5.942826 AGAGGAAGATGAAGTTTGGATTGTC 59.057 40.000 0.00 0.00 0.00 3.18
8004 10329 6.865834 ATACACTGAAGAGGAAGATGAAGT 57.134 37.500 0.00 0.00 0.00 3.01
8038 10367 2.213499 CAGATTACAACCCGGCAGATC 58.787 52.381 0.00 0.00 0.00 2.75
8059 10388 3.071312 AGGGAATGCTCAGCTCTTAGATG 59.929 47.826 0.00 0.00 31.83 2.90
8099 10428 6.942576 CCCATGAAAAAGAGGTAGAAGAAGAA 59.057 38.462 0.00 0.00 0.00 2.52
8123 10452 2.435805 TCAGCCAACACTAGATCATCCC 59.564 50.000 0.00 0.00 0.00 3.85
8189 10518 6.840780 AGAAGAGAAAGAGGAGAAGAGAAG 57.159 41.667 0.00 0.00 0.00 2.85
8190 10519 7.010160 AGAAGAAGAGAAAGAGGAGAAGAGAA 58.990 38.462 0.00 0.00 0.00 2.87
8191 10520 6.434028 CAGAAGAAGAGAAAGAGGAGAAGAGA 59.566 42.308 0.00 0.00 0.00 3.10
8192 10521 6.624423 CAGAAGAAGAGAAAGAGGAGAAGAG 58.376 44.000 0.00 0.00 0.00 2.85
8193 10522 5.047377 GCAGAAGAAGAGAAAGAGGAGAAGA 60.047 44.000 0.00 0.00 0.00 2.87
8194 10523 5.170748 GCAGAAGAAGAGAAAGAGGAGAAG 58.829 45.833 0.00 0.00 0.00 2.85
8195 10524 4.020662 GGCAGAAGAAGAGAAAGAGGAGAA 60.021 45.833 0.00 0.00 0.00 2.87
8196 10525 3.513515 GGCAGAAGAAGAGAAAGAGGAGA 59.486 47.826 0.00 0.00 0.00 3.71
8197 10526 3.515104 AGGCAGAAGAAGAGAAAGAGGAG 59.485 47.826 0.00 0.00 0.00 3.69
8198 10527 3.513515 GAGGCAGAAGAAGAGAAAGAGGA 59.486 47.826 0.00 0.00 0.00 3.71
8199 10528 3.515104 AGAGGCAGAAGAAGAGAAAGAGG 59.485 47.826 0.00 0.00 0.00 3.69
8200 10529 4.806640 AGAGGCAGAAGAAGAGAAAGAG 57.193 45.455 0.00 0.00 0.00 2.85
8201 10530 4.837860 AGAAGAGGCAGAAGAAGAGAAAGA 59.162 41.667 0.00 0.00 0.00 2.52
8202 10531 5.151297 AGAAGAGGCAGAAGAAGAGAAAG 57.849 43.478 0.00 0.00 0.00 2.62
8212 10541 1.676916 CCGCATGAAGAAGAGGCAGAA 60.677 52.381 0.00 0.00 0.00 3.02
8216 10545 0.678048 AACCCGCATGAAGAAGAGGC 60.678 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.