Multiple sequence alignment - TraesCS5D01G341700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G341700 chr5D 100.000 2828 0 0 1 2828 429741906 429744733 0.000000e+00 5223
1 TraesCS5D01G341700 chr5D 94.931 217 5 4 1 213 539719531 539719317 4.510000e-88 335
2 TraesCS5D01G341700 chr5D 93.548 217 8 4 1 213 478457651 478457437 4.550000e-83 318
3 TraesCS5D01G341700 chr5A 91.046 2122 89 42 468 2533 545600738 545602814 0.000000e+00 2772
4 TraesCS5D01G341700 chr5B 91.202 1614 75 32 468 2052 519018121 519019696 0.000000e+00 2132
5 TraesCS5D01G341700 chr5B 87.450 502 24 11 2333 2826 519020199 519020669 2.480000e-150 542
6 TraesCS5D01G341700 chr5B 96.596 235 6 2 2101 2334 519019697 519019930 3.420000e-104 388
7 TraesCS5D01G341700 chr2D 93.310 284 14 4 186 468 437917196 437916917 5.640000e-112 414
8 TraesCS5D01G341700 chr2D 89.716 282 23 4 189 468 168399062 168398785 3.470000e-94 355
9 TraesCS5D01G341700 chr2D 93.548 217 8 4 1 213 450909135 450908921 4.550000e-83 318
10 TraesCS5D01G341700 chr6D 92.361 288 18 3 187 473 68857622 68857338 9.430000e-110 407
11 TraesCS5D01G341700 chr6D 88.843 242 17 9 1 235 469264256 469264494 3.560000e-74 289
12 TraesCS5D01G341700 chr2B 92.632 285 15 3 187 470 494263038 494263317 3.390000e-109 405
13 TraesCS5D01G341700 chr2B 87.413 286 26 6 187 468 11202455 11202734 1.260000e-83 320
14 TraesCS5D01G341700 chrUn 89.273 289 20 7 187 468 31230740 31230456 4.480000e-93 351
15 TraesCS5D01G341700 chr4D 92.623 244 14 3 232 475 52767180 52767419 5.800000e-92 348
16 TraesCS5D01G341700 chr1D 87.973 291 18 9 187 471 299571419 299571140 7.550000e-86 327
17 TraesCS5D01G341700 chr1D 87.075 294 23 9 187 473 401022379 401022664 4.550000e-83 318
18 TraesCS5D01G341700 chr3D 97.396 192 3 1 1 190 14805681 14805872 2.720000e-85 326
19 TraesCS5D01G341700 chr3D 93.548 217 8 4 1 213 445086553 445086767 4.550000e-83 318
20 TraesCS5D01G341700 chr1A 94.009 217 7 4 1 213 455011497 455011711 9.770000e-85 324
21 TraesCS5D01G341700 chr7A 93.088 217 9 4 1 213 125481242 125481028 2.120000e-81 313
22 TraesCS5D01G341700 chr7D 92.627 217 10 4 1 213 168498429 168498215 9.840000e-80 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G341700 chr5D 429741906 429744733 2827 False 5223.000000 5223 100.000000 1 2828 1 chr5D.!!$F1 2827
1 TraesCS5D01G341700 chr5A 545600738 545602814 2076 False 2772.000000 2772 91.046000 468 2533 1 chr5A.!!$F1 2065
2 TraesCS5D01G341700 chr5B 519018121 519020669 2548 False 1020.666667 2132 91.749333 468 2826 3 chr5B.!!$F1 2358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.038983 TCGTCGGAGTCGCAAATGAA 60.039 50.0 0.0 0.0 39.21 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 1909 0.8951 ACGACACATTTGGCATGCCT 60.895 50.0 35.53 15.41 36.94 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.470876 GAATCGTCGGAGTCGCAA 57.529 55.556 0.00 0.00 39.21 4.85
37 38 2.733127 GAATCGTCGGAGTCGCAAA 58.267 52.632 0.00 0.00 39.21 3.68
38 39 1.278238 GAATCGTCGGAGTCGCAAAT 58.722 50.000 0.00 0.00 39.21 2.32
39 40 0.999406 AATCGTCGGAGTCGCAAATG 59.001 50.000 0.00 0.00 39.21 2.32
40 41 0.172578 ATCGTCGGAGTCGCAAATGA 59.827 50.000 0.00 0.00 39.21 2.57
41 42 0.038983 TCGTCGGAGTCGCAAATGAA 60.039 50.000 0.00 0.00 39.21 2.57
42 43 0.787787 CGTCGGAGTCGCAAATGAAA 59.212 50.000 0.00 0.00 36.13 2.69
43 44 1.393539 CGTCGGAGTCGCAAATGAAAT 59.606 47.619 0.00 0.00 36.13 2.17
44 45 2.159707 CGTCGGAGTCGCAAATGAAATT 60.160 45.455 0.00 0.00 35.24 1.82
45 46 3.163594 GTCGGAGTCGCAAATGAAATTG 58.836 45.455 0.00 0.00 34.35 2.32
46 47 2.811431 TCGGAGTCGCAAATGAAATTGT 59.189 40.909 0.00 0.00 34.35 2.71
47 48 2.910482 CGGAGTCGCAAATGAAATTGTG 59.090 45.455 0.00 0.00 41.13 3.33
48 49 3.244976 GGAGTCGCAAATGAAATTGTGG 58.755 45.455 1.30 0.00 40.38 4.17
49 50 3.057596 GGAGTCGCAAATGAAATTGTGGA 60.058 43.478 1.30 0.00 40.38 4.02
50 51 4.545610 GAGTCGCAAATGAAATTGTGGAA 58.454 39.130 1.30 0.00 40.38 3.53
51 52 4.942852 AGTCGCAAATGAAATTGTGGAAA 58.057 34.783 1.30 0.00 40.38 3.13
52 53 5.355596 AGTCGCAAATGAAATTGTGGAAAA 58.644 33.333 1.30 0.00 40.38 2.29
53 54 5.814705 AGTCGCAAATGAAATTGTGGAAAAA 59.185 32.000 1.30 0.00 40.38 1.94
69 70 3.946907 AAAAACTCGTCGGCGGAG 58.053 55.556 10.62 9.49 38.89 4.63
70 71 1.068585 AAAAACTCGTCGGCGGAGT 59.931 52.632 10.62 12.16 38.89 3.85
71 72 0.942884 AAAAACTCGTCGGCGGAGTC 60.943 55.000 17.09 1.55 38.89 3.36
72 73 2.760387 AAAACTCGTCGGCGGAGTCC 62.760 60.000 17.09 0.00 38.89 3.85
74 75 3.518998 CTCGTCGGCGGAGTCCAT 61.519 66.667 10.62 0.00 38.89 3.41
75 76 3.064987 CTCGTCGGCGGAGTCCATT 62.065 63.158 10.62 0.00 38.89 3.16
76 77 2.125673 CGTCGGCGGAGTCCATTT 60.126 61.111 10.49 0.00 0.00 2.32
77 78 1.740296 CGTCGGCGGAGTCCATTTT 60.740 57.895 10.49 0.00 0.00 1.82
78 79 1.693083 CGTCGGCGGAGTCCATTTTC 61.693 60.000 10.49 0.00 0.00 2.29
79 80 1.447140 TCGGCGGAGTCCATTTTCG 60.447 57.895 10.49 5.24 0.00 3.46
80 81 1.740296 CGGCGGAGTCCATTTTCGT 60.740 57.895 10.49 0.00 0.00 3.85
81 82 0.458889 CGGCGGAGTCCATTTTCGTA 60.459 55.000 10.49 0.00 0.00 3.43
82 83 1.004595 GGCGGAGTCCATTTTCGTAC 58.995 55.000 10.49 0.00 0.00 3.67
83 84 1.004595 GCGGAGTCCATTTTCGTACC 58.995 55.000 10.49 0.00 0.00 3.34
84 85 1.405121 GCGGAGTCCATTTTCGTACCT 60.405 52.381 10.49 0.00 0.00 3.08
85 86 2.933928 GCGGAGTCCATTTTCGTACCTT 60.934 50.000 10.49 0.00 0.00 3.50
86 87 2.671396 CGGAGTCCATTTTCGTACCTTG 59.329 50.000 10.49 0.00 0.00 3.61
87 88 3.007635 GGAGTCCATTTTCGTACCTTGG 58.992 50.000 3.60 0.00 0.00 3.61
88 89 2.418976 GAGTCCATTTTCGTACCTTGGC 59.581 50.000 0.00 0.00 0.00 4.52
89 90 2.156098 GTCCATTTTCGTACCTTGGCA 58.844 47.619 0.00 0.00 0.00 4.92
90 91 2.554893 GTCCATTTTCGTACCTTGGCAA 59.445 45.455 0.00 0.00 0.00 4.52
91 92 3.004944 GTCCATTTTCGTACCTTGGCAAA 59.995 43.478 0.00 0.00 0.00 3.68
92 93 3.004944 TCCATTTTCGTACCTTGGCAAAC 59.995 43.478 0.00 0.00 0.00 2.93
93 94 3.005367 CCATTTTCGTACCTTGGCAAACT 59.995 43.478 0.00 0.00 0.00 2.66
94 95 3.701532 TTTTCGTACCTTGGCAAACTG 57.298 42.857 0.00 0.00 0.00 3.16
95 96 2.335316 TTCGTACCTTGGCAAACTGT 57.665 45.000 0.00 1.67 0.00 3.55
96 97 1.873698 TCGTACCTTGGCAAACTGTC 58.126 50.000 0.00 0.00 0.00 3.51
97 98 0.511221 CGTACCTTGGCAAACTGTCG 59.489 55.000 0.00 0.00 0.00 4.35
98 99 1.870580 CGTACCTTGGCAAACTGTCGA 60.871 52.381 0.00 0.00 0.00 4.20
99 100 2.215196 GTACCTTGGCAAACTGTCGAA 58.785 47.619 0.00 0.00 0.00 3.71
100 101 1.021968 ACCTTGGCAAACTGTCGAAC 58.978 50.000 0.00 0.00 0.00 3.95
101 102 1.021202 CCTTGGCAAACTGTCGAACA 58.979 50.000 0.00 0.00 0.00 3.18
102 103 1.403679 CCTTGGCAAACTGTCGAACAA 59.596 47.619 0.00 0.00 0.00 2.83
103 104 2.450160 CTTGGCAAACTGTCGAACAAC 58.550 47.619 0.00 0.00 0.00 3.32
104 105 1.745232 TGGCAAACTGTCGAACAACT 58.255 45.000 0.00 0.00 0.00 3.16
105 106 2.088423 TGGCAAACTGTCGAACAACTT 58.912 42.857 0.00 0.00 0.00 2.66
106 107 2.159448 TGGCAAACTGTCGAACAACTTG 60.159 45.455 0.00 0.00 0.00 3.16
107 108 1.846175 GCAAACTGTCGAACAACTTGC 59.154 47.619 13.03 13.03 38.05 4.01
108 109 2.101125 CAAACTGTCGAACAACTTGCG 58.899 47.619 0.00 0.00 0.00 4.85
109 110 0.655733 AACTGTCGAACAACTTGCGG 59.344 50.000 0.00 0.00 0.00 5.69
110 111 1.157870 ACTGTCGAACAACTTGCGGG 61.158 55.000 0.00 0.00 0.00 6.13
111 112 2.251371 GTCGAACAACTTGCGGGC 59.749 61.111 0.00 0.00 0.00 6.13
112 113 3.342627 TCGAACAACTTGCGGGCG 61.343 61.111 0.00 0.00 0.00 6.13
113 114 3.645975 CGAACAACTTGCGGGCGT 61.646 61.111 0.00 0.00 0.00 5.68
114 115 2.251371 GAACAACTTGCGGGCGTC 59.749 61.111 0.00 0.00 0.00 5.19
115 116 3.573489 GAACAACTTGCGGGCGTCG 62.573 63.158 0.00 0.00 42.76 5.12
116 117 4.595538 ACAACTTGCGGGCGTCGA 62.596 61.111 0.00 0.00 42.43 4.20
117 118 3.342627 CAACTTGCGGGCGTCGAA 61.343 61.111 0.00 0.00 42.43 3.71
118 119 3.041940 AACTTGCGGGCGTCGAAG 61.042 61.111 0.00 0.00 42.43 3.79
119 120 3.509137 AACTTGCGGGCGTCGAAGA 62.509 57.895 1.37 0.00 42.43 2.87
120 121 2.736995 CTTGCGGGCGTCGAAGAA 60.737 61.111 1.37 0.00 39.69 2.52
121 122 2.730672 CTTGCGGGCGTCGAAGAAG 61.731 63.158 1.37 0.00 39.69 2.85
122 123 4.735132 TGCGGGCGTCGAAGAAGG 62.735 66.667 1.37 0.00 39.69 3.46
123 124 4.430765 GCGGGCGTCGAAGAAGGA 62.431 66.667 1.37 0.00 39.69 3.36
124 125 2.202623 CGGGCGTCGAAGAAGGAG 60.203 66.667 1.37 0.00 39.69 3.69
125 126 2.697761 CGGGCGTCGAAGAAGGAGA 61.698 63.158 1.37 0.00 39.69 3.71
126 127 1.153804 GGGCGTCGAAGAAGGAGAC 60.154 63.158 1.37 0.00 39.69 3.36
129 130 4.480031 GTCGAAGAAGGAGACGGC 57.520 61.111 0.00 0.00 39.69 5.68
130 131 1.153804 GTCGAAGAAGGAGACGGCC 60.154 63.158 0.00 0.00 39.69 6.13
131 132 2.202623 CGAAGAAGGAGACGGCCG 60.203 66.667 26.86 26.86 0.00 6.13
132 133 2.184579 GAAGAAGGAGACGGCCGG 59.815 66.667 31.76 11.88 0.00 6.13
133 134 4.083862 AAGAAGGAGACGGCCGGC 62.084 66.667 31.76 30.01 0.00 6.13
155 156 4.400109 GGAGACGCGACGCACAGA 62.400 66.667 21.35 0.00 0.00 3.41
156 157 3.166630 GAGACGCGACGCACAGAC 61.167 66.667 21.35 4.12 0.00 3.51
157 158 4.702081 AGACGCGACGCACAGACC 62.702 66.667 21.35 1.54 0.00 3.85
158 159 4.994201 GACGCGACGCACAGACCA 62.994 66.667 21.35 0.00 0.00 4.02
162 163 2.566529 CGACGCACAGACCAGCTA 59.433 61.111 0.00 0.00 0.00 3.32
163 164 1.515088 CGACGCACAGACCAGCTAG 60.515 63.158 0.00 0.00 0.00 3.42
164 165 1.807573 GACGCACAGACCAGCTAGC 60.808 63.158 6.62 6.62 0.00 3.42
165 166 2.219325 GACGCACAGACCAGCTAGCT 62.219 60.000 12.68 12.68 0.00 3.32
166 167 1.808799 CGCACAGACCAGCTAGCTG 60.809 63.158 33.58 33.58 43.26 4.24
167 168 2.105466 GCACAGACCAGCTAGCTGC 61.105 63.158 34.82 23.56 42.35 5.25
168 169 1.449246 CACAGACCAGCTAGCTGCC 60.449 63.158 34.82 27.12 44.23 4.85
169 170 2.188994 CAGACCAGCTAGCTGCCC 59.811 66.667 34.82 26.80 44.23 5.36
170 171 2.040278 AGACCAGCTAGCTGCCCT 59.960 61.111 34.82 28.31 44.23 5.19
171 172 2.188994 GACCAGCTAGCTGCCCTG 59.811 66.667 34.82 24.29 44.23 4.45
172 173 4.106925 ACCAGCTAGCTGCCCTGC 62.107 66.667 34.82 0.00 44.23 4.85
173 174 4.871910 CCAGCTAGCTGCCCTGCC 62.872 72.222 34.82 0.00 44.23 4.85
208 209 4.452733 GGTGACGAAGGAGGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
209 210 4.452733 GTGACGAAGGAGGCGGGG 62.453 72.222 0.00 0.00 0.00 5.73
224 225 4.660938 GGGGCGAGGGTTGCTTGT 62.661 66.667 0.00 0.00 0.00 3.16
225 226 2.597510 GGGCGAGGGTTGCTTGTT 60.598 61.111 0.00 0.00 0.00 2.83
226 227 2.644992 GGCGAGGGTTGCTTGTTG 59.355 61.111 0.00 0.00 0.00 3.33
227 228 2.644992 GCGAGGGTTGCTTGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
228 229 2.644992 CGAGGGTTGCTTGTTGGC 59.355 61.111 0.00 0.00 0.00 4.52
229 230 2.919494 CGAGGGTTGCTTGTTGGCC 61.919 63.158 0.00 0.00 0.00 5.36
230 231 2.912025 AGGGTTGCTTGTTGGCCG 60.912 61.111 0.00 0.00 0.00 6.13
231 232 3.989787 GGGTTGCTTGTTGGCCGG 61.990 66.667 0.00 0.00 0.00 6.13
232 233 3.989787 GGTTGCTTGTTGGCCGGG 61.990 66.667 2.18 0.00 0.00 5.73
233 234 3.989787 GTTGCTTGTTGGCCGGGG 61.990 66.667 2.18 0.00 0.00 5.73
248 249 3.825623 GGGGGAGGGAGGCCAATG 61.826 72.222 5.01 0.00 0.00 2.82
249 250 3.023735 GGGGAGGGAGGCCAATGT 61.024 66.667 5.01 0.00 0.00 2.71
250 251 2.276740 GGGAGGGAGGCCAATGTG 59.723 66.667 5.01 0.00 0.00 3.21
251 252 2.440980 GGAGGGAGGCCAATGTGC 60.441 66.667 5.01 0.00 0.00 4.57
259 260 2.964978 GCCAATGTGCCACAGACC 59.035 61.111 3.00 0.00 0.00 3.85
260 261 1.902918 GCCAATGTGCCACAGACCA 60.903 57.895 3.00 0.00 0.00 4.02
261 262 1.870055 GCCAATGTGCCACAGACCAG 61.870 60.000 3.00 0.00 0.00 4.00
262 263 1.582968 CAATGTGCCACAGACCAGC 59.417 57.895 3.00 0.00 0.00 4.85
263 264 1.968017 AATGTGCCACAGACCAGCG 60.968 57.895 3.00 0.00 0.00 5.18
264 265 3.907260 ATGTGCCACAGACCAGCGG 62.907 63.158 3.00 0.00 0.00 5.52
281 282 2.686106 GGCCCGGGGACAGAAGTA 60.686 66.667 25.28 0.00 0.00 2.24
282 283 2.732619 GGCCCGGGGACAGAAGTAG 61.733 68.421 25.28 0.00 0.00 2.57
283 284 2.732619 GCCCGGGGACAGAAGTAGG 61.733 68.421 25.28 0.00 0.00 3.18
284 285 2.732619 CCCGGGGACAGAAGTAGGC 61.733 68.421 14.71 0.00 0.00 3.93
285 286 2.494918 CGGGGACAGAAGTAGGCG 59.505 66.667 0.00 0.00 0.00 5.52
286 287 2.050350 CGGGGACAGAAGTAGGCGA 61.050 63.158 0.00 0.00 0.00 5.54
287 288 1.516423 GGGGACAGAAGTAGGCGAC 59.484 63.158 0.00 0.00 0.00 5.19
288 289 1.516423 GGGACAGAAGTAGGCGACC 59.484 63.158 0.00 0.00 0.00 4.79
289 290 1.139095 GGACAGAAGTAGGCGACCG 59.861 63.158 0.00 0.00 0.00 4.79
290 291 1.516603 GACAGAAGTAGGCGACCGC 60.517 63.158 5.75 5.75 41.06 5.68
291 292 2.579787 CAGAAGTAGGCGACCGCG 60.580 66.667 8.36 0.00 43.06 6.46
326 327 4.287781 TGTCCTCGCCGACGCAAA 62.288 61.111 0.00 0.00 39.84 3.68
327 328 2.813908 GTCCTCGCCGACGCAAAT 60.814 61.111 0.00 0.00 39.84 2.32
328 329 2.508439 TCCTCGCCGACGCAAATC 60.508 61.111 0.00 0.00 39.84 2.17
329 330 2.813474 CCTCGCCGACGCAAATCA 60.813 61.111 0.00 0.00 39.84 2.57
330 331 2.697425 CTCGCCGACGCAAATCAG 59.303 61.111 0.00 0.00 39.84 2.90
331 332 2.802667 CTCGCCGACGCAAATCAGG 61.803 63.158 0.00 0.00 39.84 3.86
332 333 4.520846 CGCCGACGCAAATCAGGC 62.521 66.667 0.00 0.00 44.00 4.85
333 334 3.127533 GCCGACGCAAATCAGGCT 61.128 61.111 0.00 0.00 44.06 4.58
334 335 3.093278 CCGACGCAAATCAGGCTC 58.907 61.111 0.00 0.00 0.00 4.70
335 336 1.741401 CCGACGCAAATCAGGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
336 337 1.298157 CCGACGCAAATCAGGCTCAA 61.298 55.000 0.00 0.00 0.00 3.02
337 338 0.516877 CGACGCAAATCAGGCTCAAA 59.483 50.000 0.00 0.00 0.00 2.69
338 339 1.069296 CGACGCAAATCAGGCTCAAAA 60.069 47.619 0.00 0.00 0.00 2.44
339 340 2.604373 CGACGCAAATCAGGCTCAAAAA 60.604 45.455 0.00 0.00 0.00 1.94
340 341 3.578688 GACGCAAATCAGGCTCAAAAAT 58.421 40.909 0.00 0.00 0.00 1.82
341 342 3.319755 ACGCAAATCAGGCTCAAAAATG 58.680 40.909 0.00 0.00 0.00 2.32
342 343 2.669434 CGCAAATCAGGCTCAAAAATGG 59.331 45.455 0.00 0.00 0.00 3.16
343 344 3.004862 GCAAATCAGGCTCAAAAATGGG 58.995 45.455 0.00 0.00 0.00 4.00
344 345 3.557686 GCAAATCAGGCTCAAAAATGGGT 60.558 43.478 0.00 0.00 0.00 4.51
345 346 4.248058 CAAATCAGGCTCAAAAATGGGTC 58.752 43.478 0.00 0.00 0.00 4.46
346 347 1.533625 TCAGGCTCAAAAATGGGTCG 58.466 50.000 0.00 0.00 0.00 4.79
347 348 0.109132 CAGGCTCAAAAATGGGTCGC 60.109 55.000 0.00 0.00 0.00 5.19
348 349 0.251341 AGGCTCAAAAATGGGTCGCT 60.251 50.000 0.00 0.00 0.00 4.93
349 350 0.171231 GGCTCAAAAATGGGTCGCTC 59.829 55.000 0.00 0.00 0.00 5.03
350 351 0.179189 GCTCAAAAATGGGTCGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
351 352 0.179189 CTCAAAAATGGGTCGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
352 353 1.511887 CAAAAATGGGTCGCTCGCG 60.512 57.895 0.00 0.00 41.35 5.87
353 354 2.686816 AAAAATGGGTCGCTCGCGG 61.687 57.895 6.13 0.00 40.25 6.46
354 355 3.599285 AAAATGGGTCGCTCGCGGA 62.599 57.895 6.13 0.00 40.25 5.54
355 356 4.814294 AATGGGTCGCTCGCGGAC 62.814 66.667 6.13 5.77 40.25 4.79
359 360 3.039588 GGTCGCTCGCGGACAAAA 61.040 61.111 6.13 0.00 40.25 2.44
360 361 2.600475 GGTCGCTCGCGGACAAAAA 61.600 57.895 6.13 0.00 40.25 1.94
361 362 1.495951 GTCGCTCGCGGACAAAAAT 59.504 52.632 6.13 0.00 40.25 1.82
362 363 0.717224 GTCGCTCGCGGACAAAAATA 59.283 50.000 6.13 0.00 40.25 1.40
363 364 0.717224 TCGCTCGCGGACAAAAATAC 59.283 50.000 6.13 0.00 40.25 1.89
364 365 0.583083 CGCTCGCGGACAAAAATACG 60.583 55.000 6.13 0.00 35.56 3.06
365 366 0.247537 GCTCGCGGACAAAAATACGG 60.248 55.000 6.13 0.00 0.00 4.02
366 367 1.352114 CTCGCGGACAAAAATACGGA 58.648 50.000 6.13 0.00 0.00 4.69
367 368 1.060122 CTCGCGGACAAAAATACGGAC 59.940 52.381 6.13 0.00 0.00 4.79
368 369 0.791422 CGCGGACAAAAATACGGACA 59.209 50.000 0.00 0.00 0.00 4.02
369 370 1.462869 CGCGGACAAAAATACGGACAC 60.463 52.381 0.00 0.00 0.00 3.67
371 372 1.462869 CGGACAAAAATACGGACACGC 60.463 52.381 0.00 0.00 46.04 5.34
372 373 1.532007 GGACAAAAATACGGACACGCA 59.468 47.619 0.00 0.00 46.04 5.24
373 374 2.160813 GGACAAAAATACGGACACGCAT 59.839 45.455 0.00 0.00 46.04 4.73
374 375 3.413558 GACAAAAATACGGACACGCATC 58.586 45.455 0.00 0.00 46.04 3.91
375 376 2.160813 ACAAAAATACGGACACGCATCC 59.839 45.455 0.00 0.00 46.04 3.51
376 377 2.102070 AAAATACGGACACGCATCCA 57.898 45.000 6.38 0.00 46.04 3.41
377 378 2.325583 AAATACGGACACGCATCCAT 57.674 45.000 6.38 0.00 46.04 3.41
378 379 2.325583 AATACGGACACGCATCCATT 57.674 45.000 6.38 0.00 46.04 3.16
379 380 2.325583 ATACGGACACGCATCCATTT 57.674 45.000 6.38 0.00 46.04 2.32
380 381 1.364721 TACGGACACGCATCCATTTG 58.635 50.000 6.38 0.00 46.04 2.32
381 382 1.305219 ACGGACACGCATCCATTTGG 61.305 55.000 6.38 0.00 46.04 3.28
382 383 1.809207 GGACACGCATCCATTTGGG 59.191 57.895 0.67 0.00 38.77 4.12
383 384 0.965363 GGACACGCATCCATTTGGGT 60.965 55.000 0.67 0.00 42.80 4.51
384 385 0.451783 GACACGCATCCATTTGGGTC 59.548 55.000 0.00 0.00 40.40 4.46
385 386 1.305219 ACACGCATCCATTTGGGTCG 61.305 55.000 0.00 1.31 40.40 4.79
386 387 1.024046 CACGCATCCATTTGGGTCGA 61.024 55.000 11.08 0.00 40.40 4.20
387 388 1.024579 ACGCATCCATTTGGGTCGAC 61.025 55.000 7.13 7.13 38.25 4.20
388 389 1.721487 GCATCCATTTGGGTCGACG 59.279 57.895 9.92 0.00 38.11 5.12
389 390 1.721487 CATCCATTTGGGTCGACGC 59.279 57.895 24.41 24.41 38.11 5.19
390 391 1.813753 ATCCATTTGGGTCGACGCG 60.814 57.895 25.18 3.53 38.11 6.01
391 392 2.515996 ATCCATTTGGGTCGACGCGT 62.516 55.000 25.18 13.85 38.11 6.01
392 393 2.322081 CCATTTGGGTCGACGCGTT 61.322 57.895 25.18 11.31 0.00 4.84
393 394 1.154488 CATTTGGGTCGACGCGTTG 60.154 57.895 25.18 20.76 0.00 4.10
394 395 2.322081 ATTTGGGTCGACGCGTTGG 61.322 57.895 25.66 15.24 0.00 3.77
395 396 4.973055 TTGGGTCGACGCGTTGGG 62.973 66.667 25.66 12.67 0.00 4.12
406 407 2.983592 CGTTGGGCCGCCTTTTCT 60.984 61.111 9.86 0.00 0.00 2.52
407 408 2.650778 GTTGGGCCGCCTTTTCTG 59.349 61.111 9.86 0.00 0.00 3.02
408 409 2.197324 TTGGGCCGCCTTTTCTGT 59.803 55.556 9.86 0.00 0.00 3.41
409 410 1.901464 TTGGGCCGCCTTTTCTGTC 60.901 57.895 9.86 0.00 0.00 3.51
410 411 3.062466 GGGCCGCCTTTTCTGTCC 61.062 66.667 9.86 0.00 0.00 4.02
411 412 3.431725 GGCCGCCTTTTCTGTCCG 61.432 66.667 0.71 0.00 0.00 4.79
412 413 4.103103 GCCGCCTTTTCTGTCCGC 62.103 66.667 0.00 0.00 0.00 5.54
413 414 3.788766 CCGCCTTTTCTGTCCGCG 61.789 66.667 0.00 0.00 42.37 6.46
414 415 4.445545 CGCCTTTTCTGTCCGCGC 62.446 66.667 0.00 0.00 36.02 6.86
415 416 4.103103 GCCTTTTCTGTCCGCGCC 62.103 66.667 0.00 0.00 0.00 6.53
416 417 3.788766 CCTTTTCTGTCCGCGCCG 61.789 66.667 0.00 0.00 0.00 6.46
417 418 2.736995 CTTTTCTGTCCGCGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
418 419 3.011760 CTTTTCTGTCCGCGCCGAC 62.012 63.158 20.04 20.04 0.00 4.79
448 449 3.192922 CCGCGGACGAAATGGGTC 61.193 66.667 24.07 0.00 43.93 4.46
449 450 3.550992 CGCGGACGAAATGGGTCG 61.551 66.667 0.00 0.00 46.54 4.79
450 451 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
451 452 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
452 453 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
462 463 2.355115 GGTCGCCCCATTGGAGTT 59.645 61.111 3.62 0.00 35.07 3.01
463 464 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
464 465 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
465 466 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
466 467 2.409870 CGCCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 35.39 4.26
472 473 2.360165 CCCATTGGAGTTGCTCTTATGC 59.640 50.000 3.62 0.00 0.00 3.14
477 478 1.405526 GGAGTTGCTCTTATGCCACGA 60.406 52.381 0.00 0.00 34.35 4.35
490 491 2.738480 CACGAGGAAACCGGGTCA 59.262 61.111 6.32 0.00 0.00 4.02
499 504 2.159085 GGAAACCGGGTCATCTCAGTAG 60.159 54.545 6.32 0.00 0.00 2.57
530 542 4.138109 CGCGCGGGAAACGGTAAC 62.138 66.667 24.84 0.00 44.51 2.50
538 550 2.874086 CGGGAAACGGTAACATAATCCC 59.126 50.000 0.00 0.00 39.95 3.85
541 553 1.957668 AACGGTAACATAATCCCGGC 58.042 50.000 0.00 0.00 44.57 6.13
542 554 1.125633 ACGGTAACATAATCCCGGCT 58.874 50.000 0.00 0.00 44.57 5.52
743 759 3.670377 GCCTTTGACCACCGCACC 61.670 66.667 0.00 0.00 0.00 5.01
744 760 3.353836 CCTTTGACCACCGCACCG 61.354 66.667 0.00 0.00 0.00 4.94
745 761 4.025401 CTTTGACCACCGCACCGC 62.025 66.667 0.00 0.00 0.00 5.68
746 762 4.858680 TTTGACCACCGCACCGCA 62.859 61.111 0.00 0.00 0.00 5.69
916 934 0.600057 GGACAAGGCTGAAAAGGCAG 59.400 55.000 1.95 0.00 38.91 4.85
920 938 1.682854 CAAGGCTGAAAAGGCAGACAA 59.317 47.619 0.00 0.00 46.60 3.18
921 939 2.298163 CAAGGCTGAAAAGGCAGACAAT 59.702 45.455 0.00 0.00 46.60 2.71
923 941 1.203287 GGCTGAAAAGGCAGACAATCC 59.797 52.381 0.00 0.00 43.57 3.01
924 942 1.888512 GCTGAAAAGGCAGACAATCCA 59.111 47.619 0.00 0.00 38.14 3.41
925 943 2.494870 GCTGAAAAGGCAGACAATCCAT 59.505 45.455 0.00 0.00 38.14 3.41
926 944 3.428589 GCTGAAAAGGCAGACAATCCATC 60.429 47.826 0.00 0.00 38.14 3.51
927 945 2.749076 TGAAAAGGCAGACAATCCATCG 59.251 45.455 0.00 0.00 0.00 3.84
928 946 2.787473 AAAGGCAGACAATCCATCGA 57.213 45.000 0.00 0.00 0.00 3.59
929 947 2.029838 AAGGCAGACAATCCATCGAC 57.970 50.000 0.00 0.00 0.00 4.20
930 948 0.904649 AGGCAGACAATCCATCGACA 59.095 50.000 0.00 0.00 0.00 4.35
931 949 1.487976 AGGCAGACAATCCATCGACAT 59.512 47.619 0.00 0.00 0.00 3.06
932 950 1.869767 GGCAGACAATCCATCGACATC 59.130 52.381 0.00 0.00 0.00 3.06
933 951 1.524355 GCAGACAATCCATCGACATCG 59.476 52.381 0.00 0.00 41.45 3.84
1284 1308 3.934391 CTCGTCGCCCAAGGTGTCC 62.934 68.421 0.00 0.00 34.40 4.02
1488 1515 2.341101 GCCTTCGTCCTCCTCGTCA 61.341 63.158 0.00 0.00 0.00 4.35
2046 2100 3.273434 TCAGGCATGAGTGAAAGCATAC 58.727 45.455 0.00 0.00 0.00 2.39
2052 2106 4.860907 GCATGAGTGAAAGCATACTTTTGG 59.139 41.667 0.00 0.00 46.20 3.28
2054 2108 6.680810 CATGAGTGAAAGCATACTTTTGGAA 58.319 36.000 0.00 0.00 46.20 3.53
2055 2109 6.899393 TGAGTGAAAGCATACTTTTGGAAT 57.101 33.333 0.00 0.00 46.20 3.01
2056 2110 6.680810 TGAGTGAAAGCATACTTTTGGAATG 58.319 36.000 0.00 0.00 46.20 2.67
2078 2132 6.424176 TGAAACATGTACAAAGACGAACAA 57.576 33.333 0.00 0.00 0.00 2.83
2082 2136 6.861065 ACATGTACAAAGACGAACAAAGAT 57.139 33.333 0.00 0.00 0.00 2.40
2088 2142 8.402472 TGTACAAAGACGAACAAAGATGATTTT 58.598 29.630 0.00 0.00 0.00 1.82
2092 2146 7.914537 AAGACGAACAAAGATGATTTTGAAC 57.085 32.000 5.58 0.00 39.79 3.18
2097 2151 7.379529 ACGAACAAAGATGATTTTGAACACATC 59.620 33.333 5.58 0.00 39.79 3.06
2099 2153 8.807667 AACAAAGATGATTTTGAACACATCTC 57.192 30.769 0.00 0.00 45.40 2.75
2113 2167 3.254060 CACATCTCCAAAGTCGACGAAT 58.746 45.455 10.46 0.00 0.00 3.34
2122 2176 4.259970 CCAAAGTCGACGAATGAGCATAAG 60.260 45.833 10.46 0.00 0.00 1.73
2142 2197 1.265635 GTTTGCACACACGCATCCTTA 59.734 47.619 0.00 0.00 42.62 2.69
2418 2753 5.618056 TCATCATGTTCAGAGCAGTTTTC 57.382 39.130 0.00 0.00 0.00 2.29
2420 2755 5.410746 TCATCATGTTCAGAGCAGTTTTCTC 59.589 40.000 0.00 0.00 0.00 2.87
2423 2758 3.733337 TGTTCAGAGCAGTTTTCTCTCC 58.267 45.455 0.00 0.00 38.76 3.71
2483 2827 2.135933 CGTGGAGTGTTTTCAGTCTCC 58.864 52.381 0.00 0.00 46.30 3.71
2487 2831 3.118555 TGGAGTGTTTTCAGTCTCCGAAA 60.119 43.478 0.00 0.00 46.30 3.46
2546 2890 2.549134 CGGCCGGACCATCATATGTTAA 60.549 50.000 20.10 0.00 39.03 2.01
2555 2899 3.558006 CCATCATATGTTAACCGAACGCA 59.442 43.478 2.48 0.00 41.35 5.24
2556 2900 4.034626 CCATCATATGTTAACCGAACGCAA 59.965 41.667 2.48 0.00 41.35 4.85
2576 2920 4.618460 GCAAGGACTGACTCTCGTTAATGA 60.618 45.833 0.00 0.00 0.00 2.57
2620 2964 6.983906 TCTAGCTAATGATCTTCACATGGA 57.016 37.500 0.00 0.00 0.00 3.41
2695 3040 2.885135 TGCACCCAGTTGATCAAGAT 57.115 45.000 8.80 0.00 0.00 2.40
2806 3151 6.822073 TTAATCTTCAATCATGGTACGACG 57.178 37.500 0.00 0.00 0.00 5.12
2817 3162 0.727122 GGTACGACGACGAACACCAG 60.727 60.000 15.32 0.00 42.66 4.00
2826 3171 5.052567 CGACGACGAACACCAGAAATAATAG 60.053 44.000 0.00 0.00 42.66 1.73
2827 3172 5.957798 ACGACGAACACCAGAAATAATAGA 58.042 37.500 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.099831 GCGACTCCGACGATTCGT 59.900 61.111 12.25 12.25 44.28 3.85
18 19 1.068832 TTTGCGACTCCGACGATTCG 61.069 55.000 4.14 4.14 45.44 3.34
19 20 1.005975 CATTTGCGACTCCGACGATTC 60.006 52.381 0.00 0.00 38.22 2.52
20 21 0.999406 CATTTGCGACTCCGACGATT 59.001 50.000 0.00 0.00 38.22 3.34
21 22 0.172578 TCATTTGCGACTCCGACGAT 59.827 50.000 0.00 0.00 38.22 3.73
22 23 0.038983 TTCATTTGCGACTCCGACGA 60.039 50.000 0.00 0.00 38.22 4.20
23 24 0.787787 TTTCATTTGCGACTCCGACG 59.212 50.000 0.00 0.00 38.22 5.12
24 25 3.163594 CAATTTCATTTGCGACTCCGAC 58.836 45.455 0.00 0.00 38.22 4.79
25 26 2.811431 ACAATTTCATTTGCGACTCCGA 59.189 40.909 0.00 0.00 38.22 4.55
26 27 2.910482 CACAATTTCATTTGCGACTCCG 59.090 45.455 0.00 0.00 39.16 4.63
27 28 3.057596 TCCACAATTTCATTTGCGACTCC 60.058 43.478 0.00 0.00 0.00 3.85
28 29 4.159377 TCCACAATTTCATTTGCGACTC 57.841 40.909 0.00 0.00 0.00 3.36
29 30 4.582701 TTCCACAATTTCATTTGCGACT 57.417 36.364 0.00 0.00 0.00 4.18
30 31 5.649602 TTTTCCACAATTTCATTTGCGAC 57.350 34.783 0.00 0.00 0.00 5.19
52 53 0.942884 GACTCCGCCGACGAGTTTTT 60.943 55.000 0.00 0.00 43.93 1.94
53 54 1.372623 GACTCCGCCGACGAGTTTT 60.373 57.895 0.00 0.00 43.93 2.43
54 55 2.257676 GACTCCGCCGACGAGTTT 59.742 61.111 0.00 0.00 43.93 2.66
55 56 3.745803 GGACTCCGCCGACGAGTT 61.746 66.667 0.00 0.00 43.93 3.01
57 58 2.558554 AAATGGACTCCGCCGACGAG 62.559 60.000 0.00 0.00 43.93 4.18
58 59 2.162338 AAAATGGACTCCGCCGACGA 62.162 55.000 0.00 0.00 43.93 4.20
59 60 1.693083 GAAAATGGACTCCGCCGACG 61.693 60.000 0.00 0.00 39.67 5.12
60 61 1.693083 CGAAAATGGACTCCGCCGAC 61.693 60.000 0.00 0.00 0.00 4.79
61 62 1.447140 CGAAAATGGACTCCGCCGA 60.447 57.895 0.00 0.00 0.00 5.54
62 63 0.458889 TACGAAAATGGACTCCGCCG 60.459 55.000 0.00 0.00 0.00 6.46
63 64 1.004595 GTACGAAAATGGACTCCGCC 58.995 55.000 0.00 0.00 0.00 6.13
64 65 1.004595 GGTACGAAAATGGACTCCGC 58.995 55.000 0.00 0.00 0.00 5.54
65 66 2.667473 AGGTACGAAAATGGACTCCG 57.333 50.000 0.00 0.00 0.00 4.63
66 67 3.007635 CCAAGGTACGAAAATGGACTCC 58.992 50.000 0.00 0.00 32.82 3.85
67 68 2.418976 GCCAAGGTACGAAAATGGACTC 59.581 50.000 0.00 0.00 32.82 3.36
68 69 2.224670 TGCCAAGGTACGAAAATGGACT 60.225 45.455 0.00 0.00 32.82 3.85
69 70 2.156098 TGCCAAGGTACGAAAATGGAC 58.844 47.619 0.00 0.00 32.82 4.02
70 71 2.570415 TGCCAAGGTACGAAAATGGA 57.430 45.000 0.00 0.00 32.82 3.41
71 72 3.005367 AGTTTGCCAAGGTACGAAAATGG 59.995 43.478 0.00 0.00 0.00 3.16
72 73 3.980775 CAGTTTGCCAAGGTACGAAAATG 59.019 43.478 0.00 0.00 0.00 2.32
73 74 3.634910 ACAGTTTGCCAAGGTACGAAAAT 59.365 39.130 0.00 0.00 0.00 1.82
74 75 3.018149 ACAGTTTGCCAAGGTACGAAAA 58.982 40.909 0.00 0.00 0.00 2.29
75 76 2.614983 GACAGTTTGCCAAGGTACGAAA 59.385 45.455 0.00 0.00 0.00 3.46
76 77 2.215196 GACAGTTTGCCAAGGTACGAA 58.785 47.619 0.00 0.00 0.00 3.85
77 78 1.870580 CGACAGTTTGCCAAGGTACGA 60.871 52.381 0.00 0.00 0.00 3.43
78 79 0.511221 CGACAGTTTGCCAAGGTACG 59.489 55.000 0.00 0.00 0.00 3.67
79 80 1.873698 TCGACAGTTTGCCAAGGTAC 58.126 50.000 0.00 0.00 0.00 3.34
80 81 2.215196 GTTCGACAGTTTGCCAAGGTA 58.785 47.619 0.00 0.00 0.00 3.08
81 82 1.021968 GTTCGACAGTTTGCCAAGGT 58.978 50.000 0.00 0.00 0.00 3.50
82 83 1.021202 TGTTCGACAGTTTGCCAAGG 58.979 50.000 0.00 0.00 0.00 3.61
83 84 2.097466 AGTTGTTCGACAGTTTGCCAAG 59.903 45.455 0.00 0.00 0.00 3.61
84 85 2.088423 AGTTGTTCGACAGTTTGCCAA 58.912 42.857 0.00 0.00 0.00 4.52
85 86 1.745232 AGTTGTTCGACAGTTTGCCA 58.255 45.000 0.00 0.00 0.00 4.92
86 87 2.450160 CAAGTTGTTCGACAGTTTGCC 58.550 47.619 0.00 0.00 0.00 4.52
87 88 1.846175 GCAAGTTGTTCGACAGTTTGC 59.154 47.619 4.48 15.36 39.87 3.68
88 89 2.101125 CGCAAGTTGTTCGACAGTTTG 58.899 47.619 4.48 0.00 0.00 2.93
89 90 1.063469 CCGCAAGTTGTTCGACAGTTT 59.937 47.619 4.48 0.00 0.00 2.66
90 91 0.655733 CCGCAAGTTGTTCGACAGTT 59.344 50.000 4.48 0.00 0.00 3.16
91 92 1.157870 CCCGCAAGTTGTTCGACAGT 61.158 55.000 4.48 0.00 0.00 3.55
92 93 1.569493 CCCGCAAGTTGTTCGACAG 59.431 57.895 4.48 0.00 0.00 3.51
93 94 2.539338 GCCCGCAAGTTGTTCGACA 61.539 57.895 4.48 0.00 0.00 4.35
94 95 2.251371 GCCCGCAAGTTGTTCGAC 59.749 61.111 4.48 0.00 0.00 4.20
95 96 3.342627 CGCCCGCAAGTTGTTCGA 61.343 61.111 4.48 0.00 0.00 3.71
96 97 3.573489 GACGCCCGCAAGTTGTTCG 62.573 63.158 4.48 5.81 0.00 3.95
97 98 2.251371 GACGCCCGCAAGTTGTTC 59.749 61.111 4.48 0.00 0.00 3.18
98 99 3.645975 CGACGCCCGCAAGTTGTT 61.646 61.111 4.48 0.00 0.00 2.83
99 100 4.595538 TCGACGCCCGCAAGTTGT 62.596 61.111 4.48 0.00 38.37 3.32
100 101 3.295228 CTTCGACGCCCGCAAGTTG 62.295 63.158 0.00 0.00 38.37 3.16
101 102 2.981977 TTCTTCGACGCCCGCAAGTT 62.982 55.000 0.00 0.00 38.37 2.66
102 103 3.509137 TTCTTCGACGCCCGCAAGT 62.509 57.895 0.00 0.00 38.37 3.16
103 104 2.730672 CTTCTTCGACGCCCGCAAG 61.731 63.158 0.00 0.00 38.37 4.01
104 105 2.736995 CTTCTTCGACGCCCGCAA 60.737 61.111 0.00 0.00 38.37 4.85
105 106 4.735132 CCTTCTTCGACGCCCGCA 62.735 66.667 0.00 0.00 38.37 5.69
106 107 4.430765 TCCTTCTTCGACGCCCGC 62.431 66.667 0.00 0.00 38.37 6.13
107 108 2.202623 CTCCTTCTTCGACGCCCG 60.203 66.667 0.00 0.00 40.25 6.13
108 109 1.153804 GTCTCCTTCTTCGACGCCC 60.154 63.158 0.00 0.00 0.00 6.13
109 110 1.514443 CGTCTCCTTCTTCGACGCC 60.514 63.158 0.00 0.00 43.02 5.68
110 111 1.514443 CCGTCTCCTTCTTCGACGC 60.514 63.158 5.60 0.00 46.49 5.19
112 113 1.153804 GGCCGTCTCCTTCTTCGAC 60.154 63.158 0.00 0.00 0.00 4.20
113 114 2.697761 CGGCCGTCTCCTTCTTCGA 61.698 63.158 19.50 0.00 0.00 3.71
114 115 2.202623 CGGCCGTCTCCTTCTTCG 60.203 66.667 19.50 0.00 0.00 3.79
115 116 2.184579 CCGGCCGTCTCCTTCTTC 59.815 66.667 26.12 0.00 0.00 2.87
116 117 4.083862 GCCGGCCGTCTCCTTCTT 62.084 66.667 26.12 0.00 0.00 2.52
138 139 4.400109 TCTGTGCGTCGCGTCTCC 62.400 66.667 13.38 0.00 0.00 3.71
139 140 3.166630 GTCTGTGCGTCGCGTCTC 61.167 66.667 13.38 0.00 0.00 3.36
140 141 4.702081 GGTCTGTGCGTCGCGTCT 62.702 66.667 13.38 0.00 0.00 4.18
141 142 4.994201 TGGTCTGTGCGTCGCGTC 62.994 66.667 13.38 8.92 0.00 5.19
144 145 3.626680 TAGCTGGTCTGTGCGTCGC 62.627 63.158 11.10 11.10 0.00 5.19
145 146 1.515088 CTAGCTGGTCTGTGCGTCG 60.515 63.158 0.00 0.00 0.00 5.12
146 147 1.807573 GCTAGCTGGTCTGTGCGTC 60.808 63.158 7.70 0.00 0.00 5.19
147 148 2.262915 GCTAGCTGGTCTGTGCGT 59.737 61.111 7.70 0.00 0.00 5.24
148 149 1.808799 CAGCTAGCTGGTCTGTGCG 60.809 63.158 33.06 7.65 40.17 5.34
149 150 2.105466 GCAGCTAGCTGGTCTGTGC 61.105 63.158 38.52 23.68 43.77 4.57
150 151 1.449246 GGCAGCTAGCTGGTCTGTG 60.449 63.158 38.52 18.45 43.77 3.66
151 152 2.664081 GGGCAGCTAGCTGGTCTGT 61.664 63.158 38.52 5.67 43.77 3.41
152 153 2.188994 GGGCAGCTAGCTGGTCTG 59.811 66.667 38.52 19.84 43.77 3.51
153 154 2.040278 AGGGCAGCTAGCTGGTCT 59.960 61.111 38.52 20.33 43.77 3.85
154 155 2.188994 CAGGGCAGCTAGCTGGTC 59.811 66.667 38.52 25.69 43.77 4.02
155 156 4.106925 GCAGGGCAGCTAGCTGGT 62.107 66.667 38.52 8.07 43.77 4.00
156 157 4.871910 GGCAGGGCAGCTAGCTGG 62.872 72.222 38.52 25.64 43.77 4.85
188 189 2.126031 GCCTCCTTCGTCACCGAC 60.126 66.667 0.00 0.00 44.13 4.79
189 190 3.744719 CGCCTCCTTCGTCACCGA 61.745 66.667 0.00 0.00 42.41 4.69
190 191 4.796231 CCGCCTCCTTCGTCACCG 62.796 72.222 0.00 0.00 0.00 4.94
191 192 4.452733 CCCGCCTCCTTCGTCACC 62.453 72.222 0.00 0.00 0.00 4.02
192 193 4.452733 CCCCGCCTCCTTCGTCAC 62.453 72.222 0.00 0.00 0.00 3.67
207 208 4.660938 ACAAGCAACCCTCGCCCC 62.661 66.667 0.00 0.00 0.00 5.80
208 209 2.597510 AACAAGCAACCCTCGCCC 60.598 61.111 0.00 0.00 0.00 6.13
209 210 2.644992 CAACAAGCAACCCTCGCC 59.355 61.111 0.00 0.00 0.00 5.54
210 211 2.644992 CCAACAAGCAACCCTCGC 59.355 61.111 0.00 0.00 0.00 5.03
211 212 2.644992 GCCAACAAGCAACCCTCG 59.355 61.111 0.00 0.00 0.00 4.63
212 213 2.919494 CGGCCAACAAGCAACCCTC 61.919 63.158 2.24 0.00 0.00 4.30
213 214 2.912025 CGGCCAACAAGCAACCCT 60.912 61.111 2.24 0.00 0.00 4.34
214 215 3.989787 CCGGCCAACAAGCAACCC 61.990 66.667 2.24 0.00 0.00 4.11
215 216 3.989787 CCCGGCCAACAAGCAACC 61.990 66.667 2.24 0.00 0.00 3.77
216 217 3.989787 CCCCGGCCAACAAGCAAC 61.990 66.667 2.24 0.00 0.00 4.17
231 232 3.825623 CATTGGCCTCCCTCCCCC 61.826 72.222 3.32 0.00 0.00 5.40
232 233 3.023735 ACATTGGCCTCCCTCCCC 61.024 66.667 3.32 0.00 0.00 4.81
233 234 2.276740 CACATTGGCCTCCCTCCC 59.723 66.667 3.32 0.00 0.00 4.30
234 235 2.440980 GCACATTGGCCTCCCTCC 60.441 66.667 3.32 0.00 0.00 4.30
242 243 1.870055 CTGGTCTGTGGCACATTGGC 61.870 60.000 22.35 12.00 44.52 4.52
243 244 1.870055 GCTGGTCTGTGGCACATTGG 61.870 60.000 22.35 10.02 44.52 3.16
244 245 1.582968 GCTGGTCTGTGGCACATTG 59.417 57.895 22.35 10.82 44.52 2.82
245 246 1.968017 CGCTGGTCTGTGGCACATT 60.968 57.895 22.35 0.00 44.52 2.71
246 247 2.359107 CGCTGGTCTGTGGCACAT 60.359 61.111 22.35 0.00 44.52 3.21
247 248 4.624364 CCGCTGGTCTGTGGCACA 62.624 66.667 20.76 20.76 0.00 4.57
264 265 2.686106 TACTTCTGTCCCCGGGCC 60.686 66.667 17.73 8.41 0.00 5.80
265 266 2.732619 CCTACTTCTGTCCCCGGGC 61.733 68.421 17.73 2.17 0.00 6.13
266 267 2.732619 GCCTACTTCTGTCCCCGGG 61.733 68.421 15.80 15.80 0.00 5.73
267 268 2.901042 GCCTACTTCTGTCCCCGG 59.099 66.667 0.00 0.00 0.00 5.73
268 269 2.050350 TCGCCTACTTCTGTCCCCG 61.050 63.158 0.00 0.00 0.00 5.73
269 270 1.516423 GTCGCCTACTTCTGTCCCC 59.484 63.158 0.00 0.00 0.00 4.81
270 271 1.516423 GGTCGCCTACTTCTGTCCC 59.484 63.158 0.00 0.00 0.00 4.46
271 272 1.139095 CGGTCGCCTACTTCTGTCC 59.861 63.158 0.00 0.00 0.00 4.02
272 273 1.516603 GCGGTCGCCTACTTCTGTC 60.517 63.158 3.73 0.00 34.56 3.51
273 274 2.572284 GCGGTCGCCTACTTCTGT 59.428 61.111 3.73 0.00 34.56 3.41
274 275 2.579787 CGCGGTCGCCTACTTCTG 60.580 66.667 9.85 0.00 37.98 3.02
309 310 3.583276 ATTTGCGTCGGCGAGGACA 62.583 57.895 31.06 23.66 44.10 4.02
310 311 2.799540 GATTTGCGTCGGCGAGGAC 61.800 63.158 31.06 21.61 44.10 3.85
311 312 2.508439 GATTTGCGTCGGCGAGGA 60.508 61.111 31.06 14.35 44.10 3.71
312 313 2.802667 CTGATTTGCGTCGGCGAGG 61.803 63.158 23.88 23.88 44.10 4.63
313 314 2.697425 CTGATTTGCGTCGGCGAG 59.303 61.111 16.53 5.86 44.10 5.03
314 315 2.813474 CCTGATTTGCGTCGGCGA 60.813 61.111 16.53 4.99 44.10 5.54
315 316 4.520846 GCCTGATTTGCGTCGGCG 62.521 66.667 4.29 4.29 44.10 6.46
316 317 3.100862 GAGCCTGATTTGCGTCGGC 62.101 63.158 0.00 0.00 37.76 5.54
317 318 1.298157 TTGAGCCTGATTTGCGTCGG 61.298 55.000 0.00 0.00 0.00 4.79
318 319 0.516877 TTTGAGCCTGATTTGCGTCG 59.483 50.000 0.00 0.00 0.00 5.12
319 320 2.704725 TTTTGAGCCTGATTTGCGTC 57.295 45.000 0.00 0.00 0.00 5.19
320 321 3.319755 CATTTTTGAGCCTGATTTGCGT 58.680 40.909 0.00 0.00 0.00 5.24
321 322 2.669434 CCATTTTTGAGCCTGATTTGCG 59.331 45.455 0.00 0.00 0.00 4.85
322 323 3.004862 CCCATTTTTGAGCCTGATTTGC 58.995 45.455 0.00 0.00 0.00 3.68
323 324 4.248058 GACCCATTTTTGAGCCTGATTTG 58.752 43.478 0.00 0.00 0.00 2.32
324 325 3.056607 CGACCCATTTTTGAGCCTGATTT 60.057 43.478 0.00 0.00 0.00 2.17
325 326 2.493278 CGACCCATTTTTGAGCCTGATT 59.507 45.455 0.00 0.00 0.00 2.57
326 327 2.094675 CGACCCATTTTTGAGCCTGAT 58.905 47.619 0.00 0.00 0.00 2.90
327 328 1.533625 CGACCCATTTTTGAGCCTGA 58.466 50.000 0.00 0.00 0.00 3.86
328 329 0.109132 GCGACCCATTTTTGAGCCTG 60.109 55.000 0.00 0.00 0.00 4.85
329 330 0.251341 AGCGACCCATTTTTGAGCCT 60.251 50.000 0.00 0.00 0.00 4.58
330 331 0.171231 GAGCGACCCATTTTTGAGCC 59.829 55.000 0.00 0.00 0.00 4.70
331 332 0.179189 CGAGCGACCCATTTTTGAGC 60.179 55.000 0.00 0.00 0.00 4.26
332 333 0.179189 GCGAGCGACCCATTTTTGAG 60.179 55.000 0.00 0.00 0.00 3.02
333 334 1.873165 GCGAGCGACCCATTTTTGA 59.127 52.632 0.00 0.00 0.00 2.69
334 335 1.511887 CGCGAGCGACCCATTTTTG 60.512 57.895 12.58 0.00 42.83 2.44
335 336 2.686816 CCGCGAGCGACCCATTTTT 61.687 57.895 19.72 0.00 42.83 1.94
336 337 3.124921 CCGCGAGCGACCCATTTT 61.125 61.111 19.72 0.00 42.83 1.82
337 338 4.077184 TCCGCGAGCGACCCATTT 62.077 61.111 19.72 0.00 42.83 2.32
338 339 4.814294 GTCCGCGAGCGACCCATT 62.814 66.667 19.72 0.00 42.83 3.16
342 343 1.908066 ATTTTTGTCCGCGAGCGACC 61.908 55.000 19.72 9.03 42.83 4.79
343 344 0.717224 TATTTTTGTCCGCGAGCGAC 59.283 50.000 19.72 14.59 42.83 5.19
344 345 0.717224 GTATTTTTGTCCGCGAGCGA 59.283 50.000 19.72 2.29 42.83 4.93
345 346 0.583083 CGTATTTTTGTCCGCGAGCG 60.583 55.000 8.23 10.86 39.44 5.03
346 347 0.247537 CCGTATTTTTGTCCGCGAGC 60.248 55.000 8.23 0.00 0.00 5.03
347 348 1.060122 GTCCGTATTTTTGTCCGCGAG 59.940 52.381 8.23 0.00 0.00 5.03
348 349 1.070038 GTCCGTATTTTTGTCCGCGA 58.930 50.000 8.23 0.00 0.00 5.87
349 350 0.791422 TGTCCGTATTTTTGTCCGCG 59.209 50.000 0.00 0.00 0.00 6.46
350 351 1.462869 CGTGTCCGTATTTTTGTCCGC 60.463 52.381 0.00 0.00 0.00 5.54
351 352 1.462869 GCGTGTCCGTATTTTTGTCCG 60.463 52.381 0.00 0.00 36.15 4.79
352 353 1.532007 TGCGTGTCCGTATTTTTGTCC 59.468 47.619 0.00 0.00 36.15 4.02
353 354 2.953640 TGCGTGTCCGTATTTTTGTC 57.046 45.000 0.00 0.00 36.15 3.18
354 355 2.160813 GGATGCGTGTCCGTATTTTTGT 59.839 45.455 0.00 0.00 39.60 2.83
355 356 2.160615 TGGATGCGTGTCCGTATTTTTG 59.839 45.455 4.19 0.00 39.60 2.44
356 357 2.428491 TGGATGCGTGTCCGTATTTTT 58.572 42.857 4.19 0.00 39.60 1.94
357 358 2.102070 TGGATGCGTGTCCGTATTTT 57.898 45.000 4.19 0.00 39.60 1.82
358 359 2.325583 ATGGATGCGTGTCCGTATTT 57.674 45.000 1.68 0.00 39.60 1.40
359 360 2.325583 AATGGATGCGTGTCCGTATT 57.674 45.000 3.80 0.00 39.60 1.89
360 361 1.939934 CAAATGGATGCGTGTCCGTAT 59.060 47.619 3.80 0.00 42.32 3.06
361 362 1.364721 CAAATGGATGCGTGTCCGTA 58.635 50.000 3.80 0.00 41.35 4.02
362 363 1.305219 CCAAATGGATGCGTGTCCGT 61.305 55.000 0.00 1.21 41.35 4.69
363 364 1.429021 CCAAATGGATGCGTGTCCG 59.571 57.895 0.00 0.00 41.35 4.79
364 365 0.965363 ACCCAAATGGATGCGTGTCC 60.965 55.000 0.00 1.76 38.81 4.02
365 366 0.451783 GACCCAAATGGATGCGTGTC 59.548 55.000 0.00 0.00 37.39 3.67
366 367 1.305219 CGACCCAAATGGATGCGTGT 61.305 55.000 0.00 0.00 37.39 4.49
367 368 1.024046 TCGACCCAAATGGATGCGTG 61.024 55.000 0.00 0.00 37.39 5.34
368 369 1.024579 GTCGACCCAAATGGATGCGT 61.025 55.000 3.51 0.00 37.39 5.24
369 370 1.721487 GTCGACCCAAATGGATGCG 59.279 57.895 3.51 1.94 37.39 4.73
370 371 1.721487 CGTCGACCCAAATGGATGC 59.279 57.895 10.58 0.00 37.39 3.91
371 372 1.721487 GCGTCGACCCAAATGGATG 59.279 57.895 10.58 0.00 37.39 3.51
372 373 1.813753 CGCGTCGACCCAAATGGAT 60.814 57.895 10.58 0.00 37.39 3.41
373 374 2.433491 CGCGTCGACCCAAATGGA 60.433 61.111 10.58 0.00 37.39 3.41
374 375 2.322081 AACGCGTCGACCCAAATGG 61.322 57.895 14.44 0.00 41.37 3.16
375 376 1.154488 CAACGCGTCGACCCAAATG 60.154 57.895 14.44 0.00 0.00 2.32
376 377 2.322081 CCAACGCGTCGACCCAAAT 61.322 57.895 14.44 0.00 0.00 2.32
377 378 2.968156 CCAACGCGTCGACCCAAA 60.968 61.111 14.44 0.00 0.00 3.28
378 379 4.973055 CCCAACGCGTCGACCCAA 62.973 66.667 14.44 0.00 0.00 4.12
389 390 2.983592 AGAAAAGGCGGCCCAACG 60.984 61.111 17.02 0.00 0.00 4.10
390 391 2.142357 GACAGAAAAGGCGGCCCAAC 62.142 60.000 17.02 5.20 0.00 3.77
391 392 1.901464 GACAGAAAAGGCGGCCCAA 60.901 57.895 17.02 0.00 0.00 4.12
392 393 2.282180 GACAGAAAAGGCGGCCCA 60.282 61.111 17.02 0.00 0.00 5.36
393 394 3.062466 GGACAGAAAAGGCGGCCC 61.062 66.667 17.02 0.00 0.00 5.80
394 395 3.431725 CGGACAGAAAAGGCGGCC 61.432 66.667 12.11 12.11 0.00 6.13
395 396 4.103103 GCGGACAGAAAAGGCGGC 62.103 66.667 0.00 0.00 0.00 6.53
396 397 3.788766 CGCGGACAGAAAAGGCGG 61.789 66.667 0.00 0.00 42.86 6.13
398 399 4.103103 GGCGCGGACAGAAAAGGC 62.103 66.667 8.83 0.00 0.00 4.35
399 400 3.788766 CGGCGCGGACAGAAAAGG 61.789 66.667 9.72 0.00 0.00 3.11
400 401 2.736995 TCGGCGCGGACAGAAAAG 60.737 61.111 14.27 0.00 0.00 2.27
401 402 3.039588 GTCGGCGCGGACAGAAAA 61.040 61.111 34.74 4.76 36.91 2.29
431 432 3.192922 GACCCATTTCGTCCGCGG 61.193 66.667 22.12 22.12 38.89 6.46
432 433 3.550992 CGACCCATTTCGTCCGCG 61.551 66.667 0.00 0.00 39.92 6.46
433 434 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
434 435 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
446 447 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
447 448 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
448 449 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
449 450 0.613012 AAGAGCAACTCCAATGGGGC 60.613 55.000 0.00 0.00 36.21 5.80
450 451 2.806945 TAAGAGCAACTCCAATGGGG 57.193 50.000 0.00 0.00 38.37 4.96
451 452 2.360165 GCATAAGAGCAACTCCAATGGG 59.640 50.000 0.00 0.00 0.00 4.00
452 453 2.360165 GGCATAAGAGCAACTCCAATGG 59.640 50.000 0.00 0.00 35.83 3.16
453 454 3.018856 TGGCATAAGAGCAACTCCAATG 58.981 45.455 0.00 0.00 35.83 2.82
454 455 3.019564 GTGGCATAAGAGCAACTCCAAT 58.980 45.455 0.00 0.00 35.53 3.16
455 456 2.436417 GTGGCATAAGAGCAACTCCAA 58.564 47.619 0.00 0.00 35.53 3.53
456 457 1.675714 CGTGGCATAAGAGCAACTCCA 60.676 52.381 0.00 0.00 36.27 3.86
457 458 1.009829 CGTGGCATAAGAGCAACTCC 58.990 55.000 0.00 0.00 36.27 3.85
458 459 1.929836 CTCGTGGCATAAGAGCAACTC 59.070 52.381 0.00 0.00 36.27 3.01
459 460 1.406069 CCTCGTGGCATAAGAGCAACT 60.406 52.381 10.72 0.00 36.27 3.16
460 461 1.009829 CCTCGTGGCATAAGAGCAAC 58.990 55.000 10.72 0.00 34.09 4.17
461 462 0.901827 TCCTCGTGGCATAAGAGCAA 59.098 50.000 10.72 1.38 34.09 3.91
462 463 0.901827 TTCCTCGTGGCATAAGAGCA 59.098 50.000 10.72 0.00 34.09 4.26
463 464 1.666189 GTTTCCTCGTGGCATAAGAGC 59.334 52.381 10.72 0.00 34.09 4.09
464 465 2.280628 GGTTTCCTCGTGGCATAAGAG 58.719 52.381 0.00 9.63 35.05 2.85
465 466 1.404986 CGGTTTCCTCGTGGCATAAGA 60.405 52.381 0.00 0.00 0.00 2.10
466 467 1.006832 CGGTTTCCTCGTGGCATAAG 58.993 55.000 0.00 0.00 0.00 1.73
472 473 2.047560 GACCCGGTTTCCTCGTGG 60.048 66.667 0.00 0.00 0.00 4.94
477 478 0.905357 CTGAGATGACCCGGTTTCCT 59.095 55.000 0.00 0.00 0.00 3.36
490 491 0.748367 TCGGCGCTCACTACTGAGAT 60.748 55.000 7.64 0.00 46.32 2.75
526 531 1.145803 GCGAGCCGGGATTATGTTAC 58.854 55.000 2.18 0.00 0.00 2.50
652 664 1.135915 AGCTACTCGTGCTCCTCATTG 59.864 52.381 0.00 0.00 35.67 2.82
744 760 4.759096 GAATGGCGTGTGCGGTGC 62.759 66.667 0.00 0.00 44.10 5.01
745 761 4.101790 GGAATGGCGTGTGCGGTG 62.102 66.667 0.00 0.00 44.10 4.94
746 762 4.634703 TGGAATGGCGTGTGCGGT 62.635 61.111 0.00 0.00 44.10 5.68
747 763 4.101790 GTGGAATGGCGTGTGCGG 62.102 66.667 0.00 0.00 44.10 5.69
748 764 4.101790 GGTGGAATGGCGTGTGCG 62.102 66.667 0.00 0.00 44.10 5.34
749 765 2.981560 CTGGTGGAATGGCGTGTGC 61.982 63.158 0.00 0.00 41.71 4.57
750 766 1.600636 ACTGGTGGAATGGCGTGTG 60.601 57.895 0.00 0.00 0.00 3.82
751 767 1.600636 CACTGGTGGAATGGCGTGT 60.601 57.895 0.00 0.00 0.00 4.49
752 768 2.981560 GCACTGGTGGAATGGCGTG 61.982 63.158 2.84 0.00 0.00 5.34
932 950 2.950877 GTTGATCAGCTCGACCTCG 58.049 57.895 1.76 0.00 41.45 4.63
936 954 2.370281 TCTTGGTTGATCAGCTCGAC 57.630 50.000 9.57 0.00 37.52 4.20
1336 1360 4.084888 GGCGACGTTCTTTGCCGG 62.085 66.667 0.00 0.00 36.27 6.13
1422 1449 1.515952 CCTGACGAGCGAGCTCTTG 60.516 63.158 20.97 10.32 40.69 3.02
1488 1515 2.579201 CCGCTCGACTTGTGGGAT 59.421 61.111 0.00 0.00 0.00 3.85
1623 1650 1.179814 AGTCGAAGTCCTGGAACGCT 61.180 55.000 0.00 4.53 0.00 5.07
1800 1827 2.442272 TCCAGCGGAGTAGGAGGC 60.442 66.667 0.00 0.00 0.00 4.70
1871 1909 0.895100 ACGACACATTTGGCATGCCT 60.895 50.000 35.53 15.41 36.94 4.75
2021 2069 3.192001 TGCTTTCACTCATGCCTGATTTC 59.808 43.478 0.00 0.00 0.00 2.17
2032 2086 6.489700 TCATTCCAAAAGTATGCTTTCACTCA 59.510 34.615 9.35 0.00 43.52 3.41
2046 2100 8.755018 GTCTTTGTACATGTTTCATTCCAAAAG 58.245 33.333 2.30 4.35 0.00 2.27
2052 2106 7.129622 TGTTCGTCTTTGTACATGTTTCATTC 58.870 34.615 2.30 0.00 0.00 2.67
2054 2108 6.612247 TGTTCGTCTTTGTACATGTTTCAT 57.388 33.333 2.30 0.00 0.00 2.57
2055 2109 6.424176 TTGTTCGTCTTTGTACATGTTTCA 57.576 33.333 2.30 1.04 0.00 2.69
2056 2110 7.184106 TCTTTGTTCGTCTTTGTACATGTTTC 58.816 34.615 2.30 0.00 0.00 2.78
2078 2132 7.528996 TTGGAGATGTGTTCAAAATCATCTT 57.471 32.000 7.72 0.00 44.33 2.40
2082 2136 6.513230 CGACTTTGGAGATGTGTTCAAAATCA 60.513 38.462 0.00 0.00 29.36 2.57
2088 2142 3.390135 GTCGACTTTGGAGATGTGTTCA 58.610 45.455 8.70 0.00 0.00 3.18
2092 2146 2.347697 TCGTCGACTTTGGAGATGTG 57.652 50.000 14.70 0.00 0.00 3.21
2097 2151 1.656095 GCTCATTCGTCGACTTTGGAG 59.344 52.381 14.70 15.18 0.00 3.86
2099 2153 1.428448 TGCTCATTCGTCGACTTTGG 58.572 50.000 14.70 0.00 0.00 3.28
2113 2167 2.032117 CGTGTGTGCAAACTTATGCTCA 60.032 45.455 8.83 0.54 46.54 4.26
2142 2197 1.404035 GTTCGACCAACCAAAGCAAGT 59.596 47.619 0.00 0.00 0.00 3.16
2381 2711 0.900647 GATGATCGATCGGGAGGGGT 60.901 60.000 20.03 0.00 0.00 4.95
2418 2753 1.606350 GACGAAACGTGCGTGGAGAG 61.606 60.000 19.49 0.00 41.37 3.20
2420 2755 0.386352 TAGACGAAACGTGCGTGGAG 60.386 55.000 19.49 0.00 41.37 3.86
2423 2758 1.401530 TTCTAGACGAAACGTGCGTG 58.598 50.000 19.49 7.40 41.37 5.34
2483 2827 3.354089 ACTTGTGCTGACCAAATTTCG 57.646 42.857 0.00 0.00 0.00 3.46
2487 2831 3.317993 GTGGTAACTTGTGCTGACCAAAT 59.682 43.478 0.00 0.00 41.69 2.32
2546 2890 1.300697 GTCAGTCCTTGCGTTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
2591 2935 8.828688 TGTGAAGATCATTAGCTAGATCATTG 57.171 34.615 19.63 3.69 42.36 2.82
2620 2964 1.004628 TCAGCACTTGTGCCATATGGT 59.995 47.619 22.79 0.00 37.57 3.55
2633 2977 1.884579 CAGTTTGGATTGCTCAGCACT 59.115 47.619 0.00 0.00 38.71 4.40
2639 2983 3.896648 TTCGAACAGTTTGGATTGCTC 57.103 42.857 0.00 0.00 0.00 4.26
2695 3040 9.662545 CACGAATCAACAATATAATGCATGTTA 57.337 29.630 0.00 0.00 34.45 2.41
2785 3130 4.804139 GTCGTCGTACCATGATTGAAGATT 59.196 41.667 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.