Multiple sequence alignment - TraesCS5D01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G341100 chr5D 100.000 2917 0 0 1 2917 429306209 429303293 0.000000e+00 5387.0
1 TraesCS5D01G341100 chr5D 94.954 218 11 0 2699 2916 491868125 491867908 2.780000e-90 342.0
2 TraesCS5D01G341100 chr5D 84.874 238 27 7 2479 2708 54051676 54051440 6.290000e-57 231.0
3 TraesCS5D01G341100 chr5D 82.553 235 39 2 2475 2708 341613647 341613414 3.810000e-49 206.0
4 TraesCS5D01G341100 chr5A 90.940 2042 116 39 208 2234 545130802 545128815 0.000000e+00 2682.0
5 TraesCS5D01G341100 chr5A 97.727 44 1 0 137 180 419329259 419329302 3.120000e-10 76.8
6 TraesCS5D01G341100 chr1B 90.886 1986 111 34 289 2234 516123425 516121470 0.000000e+00 2601.0
7 TraesCS5D01G341100 chr1B 84.120 233 28 5 2429 2653 516117884 516117653 1.760000e-52 217.0
8 TraesCS5D01G341100 chr5B 92.766 1092 60 12 1113 2195 518571577 518570496 0.000000e+00 1561.0
9 TraesCS5D01G341100 chr5B 92.991 799 30 12 299 1081 518572464 518571676 0.000000e+00 1142.0
10 TraesCS5D01G341100 chr5B 86.166 253 31 4 2429 2678 518567088 518566837 1.330000e-68 270.0
11 TraesCS5D01G341100 chr5B 83.654 208 28 6 2510 2714 29438287 29438491 1.070000e-44 191.0
12 TraesCS5D01G341100 chr3D 98.578 211 3 0 2707 2917 79595105 79594895 9.870000e-100 374.0
13 TraesCS5D01G341100 chr3D 97.156 211 6 0 2707 2917 79589500 79589290 9.940000e-95 357.0
14 TraesCS5D01G341100 chr3D 96.226 212 8 0 2706 2917 475131882 475132093 5.980000e-92 348.0
15 TraesCS5D01G341100 chr2D 98.104 211 4 0 2707 2917 539939206 539938996 4.590000e-98 368.0
16 TraesCS5D01G341100 chr2D 96.682 211 6 1 2707 2917 539907909 539907700 1.660000e-92 350.0
17 TraesCS5D01G341100 chr2D 84.100 239 30 5 2478 2708 607662704 607662942 1.050000e-54 224.0
18 TraesCS5D01G341100 chr6D 97.170 212 6 0 2706 2917 98088489 98088700 2.760000e-95 359.0
19 TraesCS5D01G341100 chr6D 85.774 239 26 6 2478 2708 456332297 456332535 2.250000e-61 246.0
20 TraesCS5D01G341100 chr1D 97.156 211 6 0 2707 2917 62744983 62745193 9.940000e-95 357.0
21 TraesCS5D01G341100 chr1D 96.682 211 7 0 2707 2917 57294083 57294293 4.630000e-93 351.0
22 TraesCS5D01G341100 chr7D 83.534 249 31 9 2475 2714 592974633 592974386 1.050000e-54 224.0
23 TraesCS5D01G341100 chr4D 85.202 223 24 5 2478 2697 40577651 40577435 1.360000e-53 220.0
24 TraesCS5D01G341100 chr4D 88.636 176 17 3 2534 2708 507761670 507761843 8.190000e-51 211.0
25 TraesCS5D01G341100 chr4D 92.727 55 2 2 127 180 353692233 353692180 8.670000e-11 78.7
26 TraesCS5D01G341100 chr4D 97.436 39 1 0 2387 2425 478031866 478031828 1.880000e-07 67.6
27 TraesCS5D01G341100 chr6B 83.471 242 28 10 2476 2708 693827677 693827915 6.330000e-52 215.0
28 TraesCS5D01G341100 chr2B 92.683 41 3 0 2385 2425 74025444 74025484 3.140000e-05 60.2
29 TraesCS5D01G341100 chr1A 97.143 35 1 0 2391 2425 109423189 109423155 3.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G341100 chr5D 429303293 429306209 2916 True 5387 5387 100.000 1 2917 1 chr5D.!!$R3 2916
1 TraesCS5D01G341100 chr5A 545128815 545130802 1987 True 2682 2682 90.940 208 2234 1 chr5A.!!$R1 2026
2 TraesCS5D01G341100 chr1B 516117653 516123425 5772 True 1409 2601 87.503 289 2653 2 chr1B.!!$R1 2364
3 TraesCS5D01G341100 chr5B 518566837 518572464 5627 True 991 1561 90.641 299 2678 3 chr5B.!!$R1 2379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.030101 AGAGCAAGCTATCGTCTCGC 59.970 55.0 0.0 0.0 0.00 5.03 F
170 171 0.457851 AGCAAGCTATCGTCTCGCTT 59.542 50.0 0.0 0.0 44.15 4.68 F
1701 1809 0.250234 TGCCTCCATGTCAGTGCTAC 59.750 55.0 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1809 0.028770 CTCGGACGAGAAGCTAGCTG 59.971 60.000 20.16 8.23 44.53 4.24 R
1746 1856 1.004610 CGTCAGCTAATCAATGGCACG 60.005 52.381 0.00 0.00 0.00 5.34 R
2796 6495 0.030101 CCTTCTCTCTGTCGGATCGC 59.970 60.000 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.744709 GCCTTTAGTTGGCCGCGA 60.745 61.111 8.23 0.00 44.32 5.87
21 22 2.112815 GCCTTTAGTTGGCCGCGAT 61.113 57.895 8.23 0.00 44.32 4.58
22 23 2.014594 CCTTTAGTTGGCCGCGATC 58.985 57.895 8.23 0.00 0.00 3.69
23 24 1.436983 CCTTTAGTTGGCCGCGATCC 61.437 60.000 8.23 9.32 0.00 3.36
24 25 0.462047 CTTTAGTTGGCCGCGATCCT 60.462 55.000 8.23 0.00 0.00 3.24
25 26 0.825410 TTTAGTTGGCCGCGATCCTA 59.175 50.000 8.23 2.04 0.00 2.94
26 27 0.103572 TTAGTTGGCCGCGATCCTAC 59.896 55.000 8.23 15.25 0.00 3.18
27 28 0.754217 TAGTTGGCCGCGATCCTACT 60.754 55.000 26.44 26.44 41.34 2.57
28 29 1.153429 GTTGGCCGCGATCCTACTT 60.153 57.895 8.23 0.00 0.00 2.24
29 30 1.143183 TTGGCCGCGATCCTACTTC 59.857 57.895 8.23 0.00 0.00 3.01
30 31 1.327690 TTGGCCGCGATCCTACTTCT 61.328 55.000 8.23 0.00 0.00 2.85
31 32 1.007154 GGCCGCGATCCTACTTCTC 60.007 63.158 8.23 0.00 0.00 2.87
32 33 1.734137 GCCGCGATCCTACTTCTCA 59.266 57.895 8.23 0.00 0.00 3.27
33 34 0.595310 GCCGCGATCCTACTTCTCAC 60.595 60.000 8.23 0.00 0.00 3.51
34 35 0.030908 CCGCGATCCTACTTCTCACC 59.969 60.000 8.23 0.00 0.00 4.02
35 36 0.738975 CGCGATCCTACTTCTCACCA 59.261 55.000 0.00 0.00 0.00 4.17
36 37 1.534175 CGCGATCCTACTTCTCACCAC 60.534 57.143 0.00 0.00 0.00 4.16
37 38 1.751924 GCGATCCTACTTCTCACCACT 59.248 52.381 0.00 0.00 0.00 4.00
38 39 2.950309 GCGATCCTACTTCTCACCACTA 59.050 50.000 0.00 0.00 0.00 2.74
39 40 3.380637 GCGATCCTACTTCTCACCACTAA 59.619 47.826 0.00 0.00 0.00 2.24
40 41 4.734108 GCGATCCTACTTCTCACCACTAAC 60.734 50.000 0.00 0.00 0.00 2.34
41 42 4.202030 CGATCCTACTTCTCACCACTAACC 60.202 50.000 0.00 0.00 0.00 2.85
42 43 4.122337 TCCTACTTCTCACCACTAACCA 57.878 45.455 0.00 0.00 0.00 3.67
43 44 4.087182 TCCTACTTCTCACCACTAACCAG 58.913 47.826 0.00 0.00 0.00 4.00
44 45 4.087182 CCTACTTCTCACCACTAACCAGA 58.913 47.826 0.00 0.00 0.00 3.86
45 46 4.527038 CCTACTTCTCACCACTAACCAGAA 59.473 45.833 0.00 0.00 0.00 3.02
46 47 4.608948 ACTTCTCACCACTAACCAGAAG 57.391 45.455 5.62 5.62 43.84 2.85
47 48 3.244249 ACTTCTCACCACTAACCAGAAGC 60.244 47.826 6.86 0.00 42.59 3.86
48 49 1.272490 TCTCACCACTAACCAGAAGCG 59.728 52.381 0.00 0.00 0.00 4.68
49 50 0.320374 TCACCACTAACCAGAAGCGG 59.680 55.000 0.00 0.00 0.00 5.52
50 51 0.673644 CACCACTAACCAGAAGCGGG 60.674 60.000 0.00 0.00 0.00 6.13
51 52 1.125711 ACCACTAACCAGAAGCGGGT 61.126 55.000 0.00 0.00 41.41 5.28
52 53 0.673644 CCACTAACCAGAAGCGGGTG 60.674 60.000 0.00 0.00 39.01 4.61
53 54 0.673644 CACTAACCAGAAGCGGGTGG 60.674 60.000 0.00 0.21 39.01 4.61
54 55 0.834687 ACTAACCAGAAGCGGGTGGA 60.835 55.000 8.11 0.00 39.01 4.02
55 56 0.108138 CTAACCAGAAGCGGGTGGAG 60.108 60.000 8.11 0.00 39.01 3.86
56 57 0.834687 TAACCAGAAGCGGGTGGAGT 60.835 55.000 8.11 0.00 39.01 3.85
57 58 2.046892 CCAGAAGCGGGTGGAGTG 60.047 66.667 0.00 0.00 35.67 3.51
58 59 2.046892 CAGAAGCGGGTGGAGTGG 60.047 66.667 0.00 0.00 0.00 4.00
59 60 2.526873 AGAAGCGGGTGGAGTGGT 60.527 61.111 0.00 0.00 0.00 4.16
60 61 2.147387 AGAAGCGGGTGGAGTGGTT 61.147 57.895 0.00 0.00 0.00 3.67
61 62 0.834687 AGAAGCGGGTGGAGTGGTTA 60.835 55.000 0.00 0.00 0.00 2.85
62 63 0.391263 GAAGCGGGTGGAGTGGTTAG 60.391 60.000 0.00 0.00 0.00 2.34
63 64 2.436115 GCGGGTGGAGTGGTTAGC 60.436 66.667 0.00 0.00 0.00 3.09
64 65 2.955881 GCGGGTGGAGTGGTTAGCT 61.956 63.158 0.00 0.00 0.00 3.32
65 66 1.079127 CGGGTGGAGTGGTTAGCTG 60.079 63.158 0.00 0.00 0.00 4.24
66 67 1.377333 GGGTGGAGTGGTTAGCTGC 60.377 63.158 0.00 0.00 0.00 5.25
67 68 1.741770 GGTGGAGTGGTTAGCTGCG 60.742 63.158 0.00 0.00 0.00 5.18
68 69 1.004918 GTGGAGTGGTTAGCTGCGT 60.005 57.895 0.00 0.00 0.00 5.24
69 70 0.602905 GTGGAGTGGTTAGCTGCGTT 60.603 55.000 0.00 0.00 0.00 4.84
70 71 0.602638 TGGAGTGGTTAGCTGCGTTG 60.603 55.000 0.00 0.00 0.00 4.10
71 72 1.298859 GGAGTGGTTAGCTGCGTTGG 61.299 60.000 0.00 0.00 0.00 3.77
72 73 1.912371 GAGTGGTTAGCTGCGTTGGC 61.912 60.000 0.00 0.00 40.52 4.52
73 74 2.671619 TGGTTAGCTGCGTTGGCC 60.672 61.111 0.00 0.00 38.85 5.36
74 75 2.671619 GGTTAGCTGCGTTGGCCA 60.672 61.111 0.00 0.00 38.85 5.36
75 76 2.046285 GGTTAGCTGCGTTGGCCAT 61.046 57.895 6.09 0.00 38.85 4.40
76 77 1.429423 GTTAGCTGCGTTGGCCATC 59.571 57.895 6.09 4.57 38.85 3.51
77 78 1.026718 GTTAGCTGCGTTGGCCATCT 61.027 55.000 6.09 0.00 38.85 2.90
78 79 0.744414 TTAGCTGCGTTGGCCATCTC 60.744 55.000 6.09 0.31 38.85 2.75
79 80 2.593468 TAGCTGCGTTGGCCATCTCC 62.593 60.000 6.09 0.00 38.85 3.71
80 81 2.270205 CTGCGTTGGCCATCTCCT 59.730 61.111 6.09 0.00 38.85 3.69
81 82 1.377725 CTGCGTTGGCCATCTCCTT 60.378 57.895 6.09 0.00 38.85 3.36
82 83 1.372087 CTGCGTTGGCCATCTCCTTC 61.372 60.000 6.09 0.00 38.85 3.46
83 84 1.078143 GCGTTGGCCATCTCCTTCT 60.078 57.895 6.09 0.00 0.00 2.85
84 85 0.678048 GCGTTGGCCATCTCCTTCTT 60.678 55.000 6.09 0.00 0.00 2.52
85 86 1.826385 CGTTGGCCATCTCCTTCTTT 58.174 50.000 6.09 0.00 0.00 2.52
86 87 2.162681 CGTTGGCCATCTCCTTCTTTT 58.837 47.619 6.09 0.00 0.00 2.27
87 88 2.558359 CGTTGGCCATCTCCTTCTTTTT 59.442 45.455 6.09 0.00 0.00 1.94
88 89 3.366374 CGTTGGCCATCTCCTTCTTTTTC 60.366 47.826 6.09 0.00 0.00 2.29
89 90 2.807676 TGGCCATCTCCTTCTTTTTCC 58.192 47.619 0.00 0.00 0.00 3.13
90 91 2.379907 TGGCCATCTCCTTCTTTTTCCT 59.620 45.455 0.00 0.00 0.00 3.36
91 92 3.181418 TGGCCATCTCCTTCTTTTTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
92 93 3.834813 GGCCATCTCCTTCTTTTTCCTTT 59.165 43.478 0.00 0.00 0.00 3.11
93 94 5.016831 GGCCATCTCCTTCTTTTTCCTTTA 58.983 41.667 0.00 0.00 0.00 1.85
94 95 5.480422 GGCCATCTCCTTCTTTTTCCTTTAA 59.520 40.000 0.00 0.00 0.00 1.52
95 96 6.155221 GGCCATCTCCTTCTTTTTCCTTTAAT 59.845 38.462 0.00 0.00 0.00 1.40
96 97 7.038048 GCCATCTCCTTCTTTTTCCTTTAATG 58.962 38.462 0.00 0.00 0.00 1.90
97 98 7.310052 GCCATCTCCTTCTTTTTCCTTTAATGT 60.310 37.037 0.00 0.00 0.00 2.71
98 99 9.243105 CCATCTCCTTCTTTTTCCTTTAATGTA 57.757 33.333 0.00 0.00 0.00 2.29
100 101 8.319143 TCTCCTTCTTTTTCCTTTAATGTACG 57.681 34.615 0.00 0.00 0.00 3.67
101 102 6.905578 TCCTTCTTTTTCCTTTAATGTACGC 58.094 36.000 0.00 0.00 0.00 4.42
102 103 5.793457 CCTTCTTTTTCCTTTAATGTACGCG 59.207 40.000 3.53 3.53 0.00 6.01
103 104 4.714851 TCTTTTTCCTTTAATGTACGCGC 58.285 39.130 5.73 0.00 0.00 6.86
104 105 2.791417 TTTCCTTTAATGTACGCGCG 57.209 45.000 30.96 30.96 0.00 6.86
105 106 1.993542 TTCCTTTAATGTACGCGCGA 58.006 45.000 39.36 15.84 0.00 5.87
106 107 2.212869 TCCTTTAATGTACGCGCGAT 57.787 45.000 39.36 22.80 0.00 4.58
107 108 1.855978 TCCTTTAATGTACGCGCGATG 59.144 47.619 39.36 13.87 0.00 3.84
108 109 1.070843 CCTTTAATGTACGCGCGATGG 60.071 52.381 39.36 19.12 0.00 3.51
109 110 0.931702 TTTAATGTACGCGCGATGGG 59.068 50.000 39.36 7.37 0.00 4.00
110 111 1.492319 TTAATGTACGCGCGATGGGC 61.492 55.000 39.36 20.06 38.15 5.36
111 112 2.358193 TAATGTACGCGCGATGGGCT 62.358 55.000 39.36 16.04 39.38 5.19
119 120 4.575973 GCGATGGGCTGGCCTGAT 62.576 66.667 21.72 7.32 39.11 2.90
120 121 2.194056 CGATGGGCTGGCCTGATT 59.806 61.111 21.72 3.64 36.10 2.57
121 122 1.895707 CGATGGGCTGGCCTGATTC 60.896 63.158 21.72 11.44 36.10 2.52
122 123 1.895707 GATGGGCTGGCCTGATTCG 60.896 63.158 21.72 0.00 36.10 3.34
123 124 2.615227 GATGGGCTGGCCTGATTCGT 62.615 60.000 21.72 2.94 36.10 3.85
124 125 1.344953 ATGGGCTGGCCTGATTCGTA 61.345 55.000 21.72 0.00 36.10 3.43
125 126 1.227674 GGGCTGGCCTGATTCGTAG 60.228 63.158 14.77 0.00 36.10 3.51
126 127 1.227674 GGCTGGCCTGATTCGTAGG 60.228 63.158 14.77 0.00 38.39 3.18
145 146 2.704725 GCGACAGCAAAATTCCTTCA 57.295 45.000 0.00 0.00 44.35 3.02
146 147 2.589014 GCGACAGCAAAATTCCTTCAG 58.411 47.619 0.00 0.00 44.35 3.02
147 148 2.589014 CGACAGCAAAATTCCTTCAGC 58.411 47.619 0.00 0.00 0.00 4.26
148 149 2.227388 CGACAGCAAAATTCCTTCAGCT 59.773 45.455 0.00 0.00 0.00 4.24
149 150 3.436704 CGACAGCAAAATTCCTTCAGCTA 59.563 43.478 0.00 0.00 29.83 3.32
150 151 4.436584 CGACAGCAAAATTCCTTCAGCTAG 60.437 45.833 0.00 0.00 29.83 3.42
151 152 4.655963 ACAGCAAAATTCCTTCAGCTAGA 58.344 39.130 0.00 0.00 29.83 2.43
152 153 4.699257 ACAGCAAAATTCCTTCAGCTAGAG 59.301 41.667 0.00 0.00 29.83 2.43
153 154 3.693578 AGCAAAATTCCTTCAGCTAGAGC 59.306 43.478 0.00 0.00 42.49 4.09
154 155 3.441572 GCAAAATTCCTTCAGCTAGAGCA 59.558 43.478 4.01 0.00 45.16 4.26
155 156 4.082571 GCAAAATTCCTTCAGCTAGAGCAA 60.083 41.667 4.01 0.00 45.16 3.91
156 157 5.638783 CAAAATTCCTTCAGCTAGAGCAAG 58.361 41.667 4.01 0.00 45.16 4.01
157 158 2.393271 TTCCTTCAGCTAGAGCAAGC 57.607 50.000 4.01 0.00 45.16 4.01
166 167 2.928694 GCTAGAGCAAGCTATCGTCTC 58.071 52.381 0.00 0.00 39.50 3.36
167 168 2.664424 GCTAGAGCAAGCTATCGTCTCG 60.664 54.545 0.00 0.00 39.50 4.04
168 169 0.030101 AGAGCAAGCTATCGTCTCGC 59.970 55.000 0.00 0.00 0.00 5.03
169 170 0.030101 GAGCAAGCTATCGTCTCGCT 59.970 55.000 0.00 0.00 35.09 4.93
170 171 0.457851 AGCAAGCTATCGTCTCGCTT 59.542 50.000 0.00 0.00 44.15 4.68
171 172 1.676529 AGCAAGCTATCGTCTCGCTTA 59.323 47.619 0.00 0.00 41.65 3.09
172 173 2.099263 AGCAAGCTATCGTCTCGCTTAA 59.901 45.455 0.00 0.00 41.65 1.85
173 174 2.858344 GCAAGCTATCGTCTCGCTTAAA 59.142 45.455 0.00 0.00 41.65 1.52
174 175 3.060873 GCAAGCTATCGTCTCGCTTAAAG 60.061 47.826 0.00 0.00 41.65 1.85
175 176 2.733517 AGCTATCGTCTCGCTTAAAGC 58.266 47.619 0.00 0.00 38.02 3.51
188 189 4.992381 GCTTAAAGCGAGACTCAAAGAA 57.008 40.909 2.82 0.00 0.00 2.52
189 190 5.344207 GCTTAAAGCGAGACTCAAAGAAA 57.656 39.130 2.82 0.00 0.00 2.52
190 191 5.748592 GCTTAAAGCGAGACTCAAAGAAAA 58.251 37.500 2.82 0.00 0.00 2.29
191 192 6.199393 GCTTAAAGCGAGACTCAAAGAAAAA 58.801 36.000 2.82 0.00 0.00 1.94
228 229 9.404348 CAGGCGATACATATCAATATATCAGTC 57.596 37.037 0.00 0.00 32.98 3.51
317 318 2.588989 CTGCCTCCTCCAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
318 319 2.203983 TGCCTCCTCCAAGCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
457 458 0.951558 CACAGTTGGGTGCAAGGTAC 59.048 55.000 0.00 0.00 31.10 3.34
477 486 1.474478 CTACATGAGAGCACAGGTCGT 59.526 52.381 0.00 0.00 36.27 4.34
558 569 0.532115 GCAAAGCAAATCCCATCCGT 59.468 50.000 0.00 0.00 0.00 4.69
559 570 1.736696 GCAAAGCAAATCCCATCCGTG 60.737 52.381 0.00 0.00 0.00 4.94
560 571 0.532115 AAAGCAAATCCCATCCGTGC 59.468 50.000 0.00 0.00 35.41 5.34
561 572 0.611618 AAGCAAATCCCATCCGTGCA 60.612 50.000 0.00 0.00 37.68 4.57
706 730 4.075910 TCGCGCTTGCTTGCTTCG 62.076 61.111 5.56 4.11 36.08 3.79
740 765 3.782523 TCAGATGCCCTCTTAACTCCATT 59.217 43.478 0.00 0.00 29.16 3.16
806 831 3.195698 GCCCGGAGCAACGACATC 61.196 66.667 0.73 0.00 42.97 3.06
813 838 2.742372 GCAACGACATCCCGCTGT 60.742 61.111 0.00 0.00 0.00 4.40
865 890 3.511699 CATATATATGTGCACGCGTCCT 58.488 45.455 9.86 0.00 0.00 3.85
906 941 0.935898 CTCCGTGTCGATAGCTACGT 59.064 55.000 13.06 0.00 41.36 3.57
970 1005 2.701107 GTCACAAACTCCTTAGGCTCC 58.299 52.381 0.00 0.00 0.00 4.70
1129 1236 8.128582 TCTGTCTTATTTTTGCGCCATAATTAG 58.871 33.333 4.18 4.66 0.00 1.73
1163 1270 2.872245 CGATTGATTAACCGAGGTGCAT 59.128 45.455 0.00 0.00 0.00 3.96
1220 1327 2.750350 CTCCTGTGGGGCTTCGTT 59.250 61.111 0.00 0.00 34.39 3.85
1400 1507 2.787994 GGAGATTGGATCGCCATTGAT 58.212 47.619 5.92 0.00 46.93 2.57
1404 1511 3.567164 AGATTGGATCGCCATTGATCAAC 59.433 43.478 11.07 0.00 45.46 3.18
1552 1660 3.108289 CAGCAGCACCACTCGTCG 61.108 66.667 0.00 0.00 0.00 5.12
1701 1809 0.250234 TGCCTCCATGTCAGTGCTAC 59.750 55.000 0.00 0.00 0.00 3.58
1745 1855 4.560128 AGTGATAGTATAGCGCCAATGTG 58.440 43.478 2.29 0.00 38.44 3.21
1767 1877 1.331756 GTGCCATTGATTAGCTGACGG 59.668 52.381 0.00 0.00 0.00 4.79
1771 1881 3.557054 GCCATTGATTAGCTGACGGGATA 60.557 47.826 0.00 0.00 0.00 2.59
2205 2348 0.550914 TCTGCAACCAACTCCCTGTT 59.449 50.000 0.00 0.00 39.92 3.16
2217 2360 0.976641 TCCCTGTTTGTCGCTGAGAT 59.023 50.000 0.00 0.00 0.00 2.75
2236 2379 3.533691 GCGAGAGGCGAACGAACG 61.534 66.667 0.00 0.00 44.57 3.95
2237 2380 2.175078 CGAGAGGCGAACGAACGA 59.825 61.111 9.67 0.00 44.57 3.85
2238 2381 1.441515 CGAGAGGCGAACGAACGAA 60.442 57.895 9.67 0.00 44.57 3.85
2239 2382 1.662845 CGAGAGGCGAACGAACGAAC 61.663 60.000 9.67 2.70 44.57 3.95
2240 2383 1.662845 GAGAGGCGAACGAACGAACG 61.663 60.000 9.67 7.22 39.31 3.95
2241 2384 2.713894 GAGGCGAACGAACGAACGG 61.714 63.158 9.67 0.00 37.61 4.44
2242 2385 2.730604 GGCGAACGAACGAACGGA 60.731 61.111 9.67 0.00 37.61 4.69
2243 2386 2.462898 GCGAACGAACGAACGGAC 59.537 61.111 9.67 3.85 37.61 4.79
2244 2387 2.752614 CGAACGAACGAACGGACG 59.247 61.111 0.14 11.61 37.61 4.79
2245 2388 1.722163 CGAACGAACGAACGGACGA 60.722 57.895 17.35 0.00 37.79 4.20
2259 2402 4.649088 ACGGACGAGATCACATTGATTA 57.351 40.909 0.00 0.00 37.20 1.75
2261 2404 4.804139 ACGGACGAGATCACATTGATTAAC 59.196 41.667 0.00 0.00 37.20 2.01
2262 2405 4.803613 CGGACGAGATCACATTGATTAACA 59.196 41.667 0.00 0.00 37.20 2.41
2263 2406 5.290885 CGGACGAGATCACATTGATTAACAA 59.709 40.000 0.00 0.00 37.20 2.83
2264 2407 6.478588 GGACGAGATCACATTGATTAACAAC 58.521 40.000 0.00 0.00 41.52 3.32
2265 2408 6.422776 ACGAGATCACATTGATTAACAACC 57.577 37.500 0.00 0.00 41.52 3.77
2266 2409 6.173339 ACGAGATCACATTGATTAACAACCT 58.827 36.000 0.00 0.00 41.52 3.50
2267 2410 7.327975 ACGAGATCACATTGATTAACAACCTA 58.672 34.615 0.00 0.00 41.52 3.08
2268 2411 7.822334 ACGAGATCACATTGATTAACAACCTAA 59.178 33.333 0.00 0.00 41.52 2.69
2269 2412 8.116753 CGAGATCACATTGATTAACAACCTAAC 58.883 37.037 0.00 0.00 41.52 2.34
2270 2413 9.167311 GAGATCACATTGATTAACAACCTAACT 57.833 33.333 0.00 0.00 41.52 2.24
2274 2417 9.787435 TCACATTGATTAACAACCTAACTAACT 57.213 29.630 0.00 0.00 41.52 2.24
2275 2418 9.825972 CACATTGATTAACAACCTAACTAACTG 57.174 33.333 0.00 0.00 41.52 3.16
2276 2419 9.569122 ACATTGATTAACAACCTAACTAACTGT 57.431 29.630 0.00 0.00 41.52 3.55
2319 2462 2.632987 AGCCGGGTTACATTACATCC 57.367 50.000 0.00 0.00 0.00 3.51
2350 2493 1.734465 GCTCGAAAATGACCACTCCAG 59.266 52.381 0.00 0.00 0.00 3.86
2351 2494 2.872038 GCTCGAAAATGACCACTCCAGT 60.872 50.000 0.00 0.00 0.00 4.00
2352 2495 2.996621 CTCGAAAATGACCACTCCAGTC 59.003 50.000 0.00 0.00 34.72 3.51
2353 2496 2.632996 TCGAAAATGACCACTCCAGTCT 59.367 45.455 0.00 0.00 35.21 3.24
2355 2498 3.339141 GAAAATGACCACTCCAGTCTCC 58.661 50.000 0.00 0.00 35.21 3.71
2356 2499 0.898320 AATGACCACTCCAGTCTCCG 59.102 55.000 0.00 0.00 35.21 4.63
2357 2500 0.039764 ATGACCACTCCAGTCTCCGA 59.960 55.000 0.00 0.00 35.21 4.55
2367 3398 2.160205 CCAGTCTCCGACAACTACTCA 58.840 52.381 0.00 0.00 34.60 3.41
2368 3399 2.755655 CCAGTCTCCGACAACTACTCAT 59.244 50.000 0.00 0.00 34.60 2.90
2374 3405 5.010933 TCTCCGACAACTACTCATCTCTTT 58.989 41.667 0.00 0.00 0.00 2.52
2377 3408 5.477291 TCCGACAACTACTCATCTCTTTCTT 59.523 40.000 0.00 0.00 0.00 2.52
2379 3410 6.309251 CCGACAACTACTCATCTCTTTCTTTC 59.691 42.308 0.00 0.00 0.00 2.62
2380 3411 6.309251 CGACAACTACTCATCTCTTTCTTTCC 59.691 42.308 0.00 0.00 0.00 3.13
2381 3412 6.159988 ACAACTACTCATCTCTTTCTTTCCG 58.840 40.000 0.00 0.00 0.00 4.30
2383 3414 5.715070 ACTACTCATCTCTTTCTTTCCGTG 58.285 41.667 0.00 0.00 0.00 4.94
2386 3417 4.991687 ACTCATCTCTTTCTTTCCGTGAAC 59.008 41.667 0.00 0.00 0.00 3.18
2400 3431 3.319238 CGTGAACGGGATTGCTAAATC 57.681 47.619 0.00 0.00 41.37 2.17
2401 3432 2.936498 CGTGAACGGGATTGCTAAATCT 59.064 45.455 0.00 0.00 41.74 2.40
2411 3587 6.223852 GGGATTGCTAAATCTCAGTCGATTA 58.776 40.000 0.00 0.00 42.13 1.75
2412 3588 6.706270 GGGATTGCTAAATCTCAGTCGATTAA 59.294 38.462 0.00 0.00 42.13 1.40
2415 3591 7.757097 TTGCTAAATCTCAGTCGATTAAGAC 57.243 36.000 0.00 0.00 41.23 3.01
2453 6142 1.483827 GTGATCCACTGGATGCTCTCA 59.516 52.381 15.78 4.80 43.27 3.27
2463 6152 0.737715 GATGCTCTCAACGTCGCCTT 60.738 55.000 0.00 0.00 0.00 4.35
2464 6153 0.320771 ATGCTCTCAACGTCGCCTTT 60.321 50.000 0.00 0.00 0.00 3.11
2499 6188 4.408182 GAGCATCTACAACCACATACCT 57.592 45.455 0.00 0.00 0.00 3.08
2514 6203 4.101119 CACATACCTCTAATTCGACCCCTT 59.899 45.833 0.00 0.00 0.00 3.95
2519 6208 4.533311 ACCTCTAATTCGACCCCTTAAACA 59.467 41.667 0.00 0.00 0.00 2.83
2523 6212 2.793288 TTCGACCCCTTAAACATCCC 57.207 50.000 0.00 0.00 0.00 3.85
2525 6214 0.621609 CGACCCCTTAAACATCCCCA 59.378 55.000 0.00 0.00 0.00 4.96
2526 6215 1.004979 CGACCCCTTAAACATCCCCAA 59.995 52.381 0.00 0.00 0.00 4.12
2528 6217 2.829720 GACCCCTTAAACATCCCCAAAC 59.170 50.000 0.00 0.00 0.00 2.93
2556 6252 0.525761 CCGGGCGTGTTCATTTTGAT 59.474 50.000 0.00 0.00 0.00 2.57
2570 6266 5.836705 TCATTTTGATCCCCTATTTGTCCA 58.163 37.500 0.00 0.00 0.00 4.02
2579 6275 1.013596 CTATTTGTCCATCCGCGCAA 58.986 50.000 8.75 0.00 0.00 4.85
2599 6295 5.335583 CGCAACCACAATCCTCATTTTCTTA 60.336 40.000 0.00 0.00 0.00 2.10
2638 6334 4.277174 ACTTGCACGTGATTGGTGAAAATA 59.723 37.500 22.23 0.00 37.60 1.40
2653 6349 9.627123 TTGGTGAAAATAAAGAGAGAGAAAGAA 57.373 29.630 0.00 0.00 0.00 2.52
2684 6383 9.541143 TGAATAAAGAAAAAGAAAATGTGGTCC 57.459 29.630 0.00 0.00 0.00 4.46
2685 6384 8.587952 AATAAAGAAAAAGAAAATGTGGTCCG 57.412 30.769 0.00 0.00 0.00 4.79
2686 6385 4.584327 AGAAAAAGAAAATGTGGTCCGG 57.416 40.909 0.00 0.00 0.00 5.14
2687 6386 3.320826 AGAAAAAGAAAATGTGGTCCGGG 59.679 43.478 0.00 0.00 0.00 5.73
2688 6387 2.668144 AAAGAAAATGTGGTCCGGGA 57.332 45.000 0.00 0.00 0.00 5.14
2689 6388 2.899303 AAGAAAATGTGGTCCGGGAT 57.101 45.000 0.00 0.00 0.00 3.85
2690 6389 2.128771 AGAAAATGTGGTCCGGGATG 57.871 50.000 0.00 0.00 0.00 3.51
2691 6390 1.102978 GAAAATGTGGTCCGGGATGG 58.897 55.000 0.00 0.00 40.09 3.51
2692 6391 0.324275 AAAATGTGGTCCGGGATGGG 60.324 55.000 0.00 0.00 38.76 4.00
2693 6392 1.211567 AAATGTGGTCCGGGATGGGA 61.212 55.000 0.00 0.00 38.76 4.37
2718 6417 5.464965 GTGTCCTACGTGTTGGAAATATG 57.535 43.478 4.75 0.00 36.32 1.78
2719 6418 5.172934 GTGTCCTACGTGTTGGAAATATGA 58.827 41.667 4.75 0.00 36.32 2.15
2720 6419 5.291128 GTGTCCTACGTGTTGGAAATATGAG 59.709 44.000 4.75 0.00 36.32 2.90
2721 6420 4.270325 GTCCTACGTGTTGGAAATATGAGC 59.730 45.833 4.75 0.00 36.32 4.26
2722 6421 4.081365 TCCTACGTGTTGGAAATATGAGCA 60.081 41.667 0.00 0.00 31.75 4.26
2723 6422 4.634004 CCTACGTGTTGGAAATATGAGCAA 59.366 41.667 0.00 0.00 0.00 3.91
2724 6423 5.296780 CCTACGTGTTGGAAATATGAGCAAT 59.703 40.000 0.00 0.00 0.00 3.56
2725 6424 5.643379 ACGTGTTGGAAATATGAGCAATT 57.357 34.783 0.00 0.00 0.00 2.32
2726 6425 6.024552 ACGTGTTGGAAATATGAGCAATTT 57.975 33.333 0.00 0.00 0.00 1.82
2727 6426 7.151999 ACGTGTTGGAAATATGAGCAATTTA 57.848 32.000 0.00 0.00 0.00 1.40
2728 6427 7.027161 ACGTGTTGGAAATATGAGCAATTTAC 58.973 34.615 0.00 0.00 0.00 2.01
2729 6428 6.472163 CGTGTTGGAAATATGAGCAATTTACC 59.528 38.462 0.00 0.00 0.00 2.85
2730 6429 7.319646 GTGTTGGAAATATGAGCAATTTACCA 58.680 34.615 0.00 0.00 0.00 3.25
2731 6430 7.816995 GTGTTGGAAATATGAGCAATTTACCAA 59.183 33.333 0.00 0.00 34.63 3.67
2732 6431 8.370940 TGTTGGAAATATGAGCAATTTACCAAA 58.629 29.630 0.00 0.00 36.45 3.28
2733 6432 9.382275 GTTGGAAATATGAGCAATTTACCAAAT 57.618 29.630 0.00 0.00 36.45 2.32
2734 6433 8.945481 TGGAAATATGAGCAATTTACCAAATG 57.055 30.769 0.00 0.00 0.00 2.32
2735 6434 8.756927 TGGAAATATGAGCAATTTACCAAATGA 58.243 29.630 0.00 0.00 0.00 2.57
2736 6435 9.768662 GGAAATATGAGCAATTTACCAAATGAT 57.231 29.630 0.00 0.00 0.00 2.45
2798 6497 6.408858 AACAGTGATAAAACTAGTCATGCG 57.591 37.500 0.00 0.00 0.00 4.73
2799 6498 5.720202 ACAGTGATAAAACTAGTCATGCGA 58.280 37.500 0.00 0.00 0.00 5.10
2800 6499 6.341316 ACAGTGATAAAACTAGTCATGCGAT 58.659 36.000 0.00 0.00 0.00 4.58
2801 6500 6.477033 ACAGTGATAAAACTAGTCATGCGATC 59.523 38.462 0.00 0.00 0.00 3.69
2802 6501 5.986135 AGTGATAAAACTAGTCATGCGATCC 59.014 40.000 0.00 0.00 0.00 3.36
2803 6502 4.982295 TGATAAAACTAGTCATGCGATCCG 59.018 41.667 0.00 0.00 0.00 4.18
2804 6503 3.520290 AAAACTAGTCATGCGATCCGA 57.480 42.857 0.00 0.00 0.00 4.55
2805 6504 2.493713 AACTAGTCATGCGATCCGAC 57.506 50.000 0.00 0.00 0.00 4.79
2806 6505 1.389555 ACTAGTCATGCGATCCGACA 58.610 50.000 0.00 0.00 31.92 4.35
2807 6506 1.335182 ACTAGTCATGCGATCCGACAG 59.665 52.381 0.00 0.00 31.92 3.51
2808 6507 1.604278 CTAGTCATGCGATCCGACAGA 59.396 52.381 0.00 0.00 31.92 3.41
2809 6508 0.383590 AGTCATGCGATCCGACAGAG 59.616 55.000 0.00 0.00 31.92 3.35
2810 6509 0.382158 GTCATGCGATCCGACAGAGA 59.618 55.000 0.00 0.00 0.00 3.10
2811 6510 0.665298 TCATGCGATCCGACAGAGAG 59.335 55.000 0.00 0.00 0.00 3.20
2812 6511 0.665298 CATGCGATCCGACAGAGAGA 59.335 55.000 0.00 0.00 0.00 3.10
2813 6512 1.066152 CATGCGATCCGACAGAGAGAA 59.934 52.381 0.00 0.00 0.00 2.87
2814 6513 0.735471 TGCGATCCGACAGAGAGAAG 59.265 55.000 0.00 0.00 0.00 2.85
2815 6514 0.030101 GCGATCCGACAGAGAGAAGG 59.970 60.000 0.00 0.00 0.00 3.46
2816 6515 1.384525 CGATCCGACAGAGAGAAGGT 58.615 55.000 0.00 0.00 0.00 3.50
2817 6516 2.562635 CGATCCGACAGAGAGAAGGTA 58.437 52.381 0.00 0.00 0.00 3.08
2818 6517 2.943690 CGATCCGACAGAGAGAAGGTAA 59.056 50.000 0.00 0.00 0.00 2.85
2819 6518 3.377485 CGATCCGACAGAGAGAAGGTAAA 59.623 47.826 0.00 0.00 0.00 2.01
2820 6519 4.036971 CGATCCGACAGAGAGAAGGTAAAT 59.963 45.833 0.00 0.00 0.00 1.40
2821 6520 5.238868 CGATCCGACAGAGAGAAGGTAAATA 59.761 44.000 0.00 0.00 0.00 1.40
2822 6521 6.238676 CGATCCGACAGAGAGAAGGTAAATAA 60.239 42.308 0.00 0.00 0.00 1.40
2823 6522 6.205101 TCCGACAGAGAGAAGGTAAATAAC 57.795 41.667 0.00 0.00 0.00 1.89
2824 6523 5.713389 TCCGACAGAGAGAAGGTAAATAACA 59.287 40.000 0.00 0.00 0.00 2.41
2825 6524 6.380274 TCCGACAGAGAGAAGGTAAATAACAT 59.620 38.462 0.00 0.00 0.00 2.71
2826 6525 6.697892 CCGACAGAGAGAAGGTAAATAACATC 59.302 42.308 0.00 0.00 0.00 3.06
2827 6526 7.416890 CCGACAGAGAGAAGGTAAATAACATCT 60.417 40.741 0.00 0.00 0.00 2.90
2828 6527 7.433719 CGACAGAGAGAAGGTAAATAACATCTG 59.566 40.741 0.00 0.00 37.16 2.90
2829 6528 7.044798 ACAGAGAGAAGGTAAATAACATCTGC 58.955 38.462 0.00 0.00 35.09 4.26
2830 6529 7.044181 CAGAGAGAAGGTAAATAACATCTGCA 58.956 38.462 0.00 0.00 0.00 4.41
2831 6530 7.714377 CAGAGAGAAGGTAAATAACATCTGCAT 59.286 37.037 0.00 0.00 0.00 3.96
2832 6531 8.928448 AGAGAGAAGGTAAATAACATCTGCATA 58.072 33.333 0.00 0.00 0.00 3.14
2833 6532 9.717942 GAGAGAAGGTAAATAACATCTGCATAT 57.282 33.333 0.00 0.00 0.00 1.78
2846 6545 7.969536 ACATCTGCATATATGAACTGTAACC 57.030 36.000 17.10 0.00 0.00 2.85
2847 6546 7.508687 ACATCTGCATATATGAACTGTAACCA 58.491 34.615 17.10 0.82 0.00 3.67
2848 6547 7.992608 ACATCTGCATATATGAACTGTAACCAA 59.007 33.333 17.10 0.00 0.00 3.67
2849 6548 8.501580 CATCTGCATATATGAACTGTAACCAAG 58.498 37.037 17.10 0.00 0.00 3.61
2850 6549 7.564793 TCTGCATATATGAACTGTAACCAAGT 58.435 34.615 17.10 0.00 0.00 3.16
2851 6550 8.046708 TCTGCATATATGAACTGTAACCAAGTT 58.953 33.333 17.10 0.00 0.00 2.66
2852 6551 8.574251 TGCATATATGAACTGTAACCAAGTTT 57.426 30.769 17.10 0.00 0.00 2.66
2853 6552 9.674068 TGCATATATGAACTGTAACCAAGTTTA 57.326 29.630 17.10 0.00 0.00 2.01
2860 6559 9.877178 ATGAACTGTAACCAAGTTTATCTAGAG 57.123 33.333 0.00 0.00 0.00 2.43
2861 6560 7.817962 TGAACTGTAACCAAGTTTATCTAGAGC 59.182 37.037 0.00 0.00 0.00 4.09
2862 6561 7.241042 ACTGTAACCAAGTTTATCTAGAGCA 57.759 36.000 0.00 0.00 0.00 4.26
2863 6562 7.324178 ACTGTAACCAAGTTTATCTAGAGCAG 58.676 38.462 0.00 0.00 0.00 4.24
2864 6563 7.178628 ACTGTAACCAAGTTTATCTAGAGCAGA 59.821 37.037 0.00 0.00 37.79 4.26
2865 6564 7.321153 TGTAACCAAGTTTATCTAGAGCAGAC 58.679 38.462 0.00 0.00 35.62 3.51
2866 6565 6.360370 AACCAAGTTTATCTAGAGCAGACA 57.640 37.500 0.00 0.00 35.62 3.41
2867 6566 5.971763 ACCAAGTTTATCTAGAGCAGACAG 58.028 41.667 0.00 0.00 35.62 3.51
2868 6567 5.482175 ACCAAGTTTATCTAGAGCAGACAGT 59.518 40.000 0.00 0.00 35.62 3.55
2869 6568 6.663953 ACCAAGTTTATCTAGAGCAGACAGTA 59.336 38.462 0.00 0.00 35.62 2.74
2870 6569 7.147983 ACCAAGTTTATCTAGAGCAGACAGTAG 60.148 40.741 0.00 0.00 35.62 2.57
2871 6570 6.952773 AGTTTATCTAGAGCAGACAGTAGG 57.047 41.667 0.00 0.00 35.62 3.18
2872 6571 6.664714 AGTTTATCTAGAGCAGACAGTAGGA 58.335 40.000 0.00 0.00 35.62 2.94
2873 6572 6.544564 AGTTTATCTAGAGCAGACAGTAGGAC 59.455 42.308 0.00 0.00 35.62 3.85
2874 6573 4.511786 ATCTAGAGCAGACAGTAGGACA 57.488 45.455 0.00 0.00 35.62 4.02
2875 6574 4.302559 TCTAGAGCAGACAGTAGGACAA 57.697 45.455 0.00 0.00 0.00 3.18
2876 6575 4.265893 TCTAGAGCAGACAGTAGGACAAG 58.734 47.826 0.00 0.00 0.00 3.16
2877 6576 2.883026 AGAGCAGACAGTAGGACAAGT 58.117 47.619 0.00 0.00 0.00 3.16
2878 6577 3.235200 AGAGCAGACAGTAGGACAAGTT 58.765 45.455 0.00 0.00 0.00 2.66
2879 6578 3.643792 AGAGCAGACAGTAGGACAAGTTT 59.356 43.478 0.00 0.00 0.00 2.66
2880 6579 3.991121 GAGCAGACAGTAGGACAAGTTTC 59.009 47.826 0.00 0.00 0.00 2.78
2881 6580 3.388024 AGCAGACAGTAGGACAAGTTTCA 59.612 43.478 0.00 0.00 0.00 2.69
2882 6581 4.040952 AGCAGACAGTAGGACAAGTTTCAT 59.959 41.667 0.00 0.00 0.00 2.57
2883 6582 5.246203 AGCAGACAGTAGGACAAGTTTCATA 59.754 40.000 0.00 0.00 0.00 2.15
2884 6583 6.070538 AGCAGACAGTAGGACAAGTTTCATAT 60.071 38.462 0.00 0.00 0.00 1.78
2885 6584 7.124298 AGCAGACAGTAGGACAAGTTTCATATA 59.876 37.037 0.00 0.00 0.00 0.86
2886 6585 7.928706 GCAGACAGTAGGACAAGTTTCATATAT 59.071 37.037 0.00 0.00 0.00 0.86
2887 6586 9.254133 CAGACAGTAGGACAAGTTTCATATATG 57.746 37.037 6.36 6.36 0.00 1.78
2888 6587 9.201989 AGACAGTAGGACAAGTTTCATATATGA 57.798 33.333 11.49 11.49 34.44 2.15
2889 6588 9.817809 GACAGTAGGACAAGTTTCATATATGAA 57.182 33.333 21.67 21.67 44.42 2.57
2890 6589 9.823647 ACAGTAGGACAAGTTTCATATATGAAG 57.176 33.333 23.61 16.32 46.34 3.02
2891 6590 9.823647 CAGTAGGACAAGTTTCATATATGAAGT 57.176 33.333 23.61 18.88 46.34 3.01
2912 6611 9.032624 TGAAGTAGAACCTAACATATATAGGGC 57.967 37.037 14.95 8.67 43.55 5.19
2913 6612 8.967779 AAGTAGAACCTAACATATATAGGGCA 57.032 34.615 14.95 0.00 43.55 5.36
2914 6613 8.967779 AGTAGAACCTAACATATATAGGGCAA 57.032 34.615 14.95 0.30 43.55 4.52
2915 6614 9.388672 AGTAGAACCTAACATATATAGGGCAAA 57.611 33.333 14.95 0.56 43.55 3.68
2916 6615 9.433153 GTAGAACCTAACATATATAGGGCAAAC 57.567 37.037 14.95 7.02 43.55 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.436983 GGATCGCGGCCAACTAAAGG 61.437 60.000 6.13 0.00 0.00 3.11
7 8 0.103572 GTAGGATCGCGGCCAACTAA 59.896 55.000 18.70 0.00 0.00 2.24
8 9 0.754217 AGTAGGATCGCGGCCAACTA 60.754 55.000 18.70 7.14 0.00 2.24
9 10 1.614241 AAGTAGGATCGCGGCCAACT 61.614 55.000 18.70 8.55 0.00 3.16
11 12 1.143183 GAAGTAGGATCGCGGCCAA 59.857 57.895 18.70 0.00 0.00 4.52
12 13 1.735376 GAGAAGTAGGATCGCGGCCA 61.735 60.000 18.70 4.80 0.00 5.36
13 14 1.007154 GAGAAGTAGGATCGCGGCC 60.007 63.158 6.13 8.74 0.00 6.13
14 15 0.595310 GTGAGAAGTAGGATCGCGGC 60.595 60.000 6.13 0.00 0.00 6.53
16 17 0.738975 TGGTGAGAAGTAGGATCGCG 59.261 55.000 0.00 0.00 0.00 5.87
17 18 1.751924 AGTGGTGAGAAGTAGGATCGC 59.248 52.381 0.00 0.00 0.00 4.58
18 19 4.202030 GGTTAGTGGTGAGAAGTAGGATCG 60.202 50.000 0.00 0.00 0.00 3.69
19 20 4.710375 TGGTTAGTGGTGAGAAGTAGGATC 59.290 45.833 0.00 0.00 0.00 3.36
20 21 4.684724 TGGTTAGTGGTGAGAAGTAGGAT 58.315 43.478 0.00 0.00 0.00 3.24
21 22 4.087182 CTGGTTAGTGGTGAGAAGTAGGA 58.913 47.826 0.00 0.00 0.00 2.94
22 23 4.087182 TCTGGTTAGTGGTGAGAAGTAGG 58.913 47.826 0.00 0.00 0.00 3.18
23 24 5.715070 CTTCTGGTTAGTGGTGAGAAGTAG 58.285 45.833 0.00 0.00 36.46 2.57
24 25 4.021368 GCTTCTGGTTAGTGGTGAGAAGTA 60.021 45.833 0.00 0.00 41.09 2.24
25 26 3.244249 GCTTCTGGTTAGTGGTGAGAAGT 60.244 47.826 0.00 0.00 41.09 3.01
26 27 3.330267 GCTTCTGGTTAGTGGTGAGAAG 58.670 50.000 0.00 0.00 41.67 2.85
27 28 2.288825 CGCTTCTGGTTAGTGGTGAGAA 60.289 50.000 0.00 0.00 0.00 2.87
28 29 1.272490 CGCTTCTGGTTAGTGGTGAGA 59.728 52.381 0.00 0.00 0.00 3.27
29 30 1.673033 CCGCTTCTGGTTAGTGGTGAG 60.673 57.143 0.00 0.00 38.26 3.51
30 31 0.320374 CCGCTTCTGGTTAGTGGTGA 59.680 55.000 0.00 0.00 38.26 4.02
31 32 0.673644 CCCGCTTCTGGTTAGTGGTG 60.674 60.000 0.00 0.00 40.84 4.17
32 33 1.125711 ACCCGCTTCTGGTTAGTGGT 61.126 55.000 0.00 0.00 40.84 4.16
33 34 0.673644 CACCCGCTTCTGGTTAGTGG 60.674 60.000 0.00 0.00 41.85 4.00
34 35 0.673644 CCACCCGCTTCTGGTTAGTG 60.674 60.000 0.00 0.00 32.46 2.74
35 36 0.834687 TCCACCCGCTTCTGGTTAGT 60.835 55.000 0.00 0.00 32.46 2.24
36 37 0.108138 CTCCACCCGCTTCTGGTTAG 60.108 60.000 0.00 0.00 32.46 2.34
37 38 0.834687 ACTCCACCCGCTTCTGGTTA 60.835 55.000 0.00 0.00 32.46 2.85
38 39 2.147387 ACTCCACCCGCTTCTGGTT 61.147 57.895 0.00 0.00 32.46 3.67
39 40 2.526873 ACTCCACCCGCTTCTGGT 60.527 61.111 0.00 0.00 36.21 4.00
40 41 2.046892 CACTCCACCCGCTTCTGG 60.047 66.667 0.00 0.00 0.00 3.86
41 42 2.046892 CCACTCCACCCGCTTCTG 60.047 66.667 0.00 0.00 0.00 3.02
42 43 0.834687 TAACCACTCCACCCGCTTCT 60.835 55.000 0.00 0.00 0.00 2.85
43 44 0.391263 CTAACCACTCCACCCGCTTC 60.391 60.000 0.00 0.00 0.00 3.86
44 45 1.677552 CTAACCACTCCACCCGCTT 59.322 57.895 0.00 0.00 0.00 4.68
45 46 2.955881 GCTAACCACTCCACCCGCT 61.956 63.158 0.00 0.00 0.00 5.52
46 47 2.436115 GCTAACCACTCCACCCGC 60.436 66.667 0.00 0.00 0.00 6.13
47 48 1.079127 CAGCTAACCACTCCACCCG 60.079 63.158 0.00 0.00 0.00 5.28
48 49 1.377333 GCAGCTAACCACTCCACCC 60.377 63.158 0.00 0.00 0.00 4.61
49 50 1.741770 CGCAGCTAACCACTCCACC 60.742 63.158 0.00 0.00 0.00 4.61
50 51 0.602905 AACGCAGCTAACCACTCCAC 60.603 55.000 0.00 0.00 0.00 4.02
51 52 0.602638 CAACGCAGCTAACCACTCCA 60.603 55.000 0.00 0.00 0.00 3.86
52 53 1.298859 CCAACGCAGCTAACCACTCC 61.299 60.000 0.00 0.00 0.00 3.85
53 54 1.912371 GCCAACGCAGCTAACCACTC 61.912 60.000 0.00 0.00 34.03 3.51
54 55 1.966451 GCCAACGCAGCTAACCACT 60.966 57.895 0.00 0.00 34.03 4.00
55 56 2.561373 GCCAACGCAGCTAACCAC 59.439 61.111 0.00 0.00 34.03 4.16
56 57 2.671619 GGCCAACGCAGCTAACCA 60.672 61.111 0.00 0.00 36.38 3.67
57 58 1.993369 GATGGCCAACGCAGCTAACC 61.993 60.000 10.96 0.00 36.38 2.85
58 59 1.026718 AGATGGCCAACGCAGCTAAC 61.027 55.000 10.96 0.00 36.38 2.34
59 60 0.744414 GAGATGGCCAACGCAGCTAA 60.744 55.000 10.96 0.00 36.38 3.09
60 61 1.153369 GAGATGGCCAACGCAGCTA 60.153 57.895 10.96 0.00 36.38 3.32
61 62 2.437359 GAGATGGCCAACGCAGCT 60.437 61.111 10.96 0.00 36.38 4.24
62 63 3.512516 GGAGATGGCCAACGCAGC 61.513 66.667 18.07 4.64 36.38 5.25
63 64 1.372087 GAAGGAGATGGCCAACGCAG 61.372 60.000 18.07 0.00 36.38 5.18
64 65 1.377202 GAAGGAGATGGCCAACGCA 60.377 57.895 18.07 0.00 36.38 5.24
65 66 0.678048 AAGAAGGAGATGGCCAACGC 60.678 55.000 10.96 9.39 0.00 4.84
66 67 1.826385 AAAGAAGGAGATGGCCAACG 58.174 50.000 10.96 0.00 0.00 4.10
67 68 3.056536 GGAAAAAGAAGGAGATGGCCAAC 60.057 47.826 10.96 7.42 0.00 3.77
68 69 3.165071 GGAAAAAGAAGGAGATGGCCAA 58.835 45.455 10.96 0.00 0.00 4.52
69 70 2.379907 AGGAAAAAGAAGGAGATGGCCA 59.620 45.455 8.56 8.56 0.00 5.36
70 71 3.093057 AGGAAAAAGAAGGAGATGGCC 57.907 47.619 0.00 0.00 0.00 5.36
71 72 6.590234 TTAAAGGAAAAAGAAGGAGATGGC 57.410 37.500 0.00 0.00 0.00 4.40
72 73 8.127150 ACATTAAAGGAAAAAGAAGGAGATGG 57.873 34.615 0.00 0.00 0.00 3.51
74 75 8.947115 CGTACATTAAAGGAAAAAGAAGGAGAT 58.053 33.333 0.00 0.00 0.00 2.75
75 76 7.094933 GCGTACATTAAAGGAAAAAGAAGGAGA 60.095 37.037 0.00 0.00 0.00 3.71
76 77 7.021790 GCGTACATTAAAGGAAAAAGAAGGAG 58.978 38.462 0.00 0.00 0.00 3.69
77 78 6.347888 CGCGTACATTAAAGGAAAAAGAAGGA 60.348 38.462 0.00 0.00 0.00 3.36
78 79 5.793457 CGCGTACATTAAAGGAAAAAGAAGG 59.207 40.000 0.00 0.00 0.00 3.46
79 80 5.283012 GCGCGTACATTAAAGGAAAAAGAAG 59.717 40.000 8.43 0.00 0.00 2.85
80 81 5.148568 GCGCGTACATTAAAGGAAAAAGAA 58.851 37.500 8.43 0.00 0.00 2.52
81 82 4.667161 CGCGCGTACATTAAAGGAAAAAGA 60.667 41.667 24.19 0.00 0.00 2.52
82 83 3.536837 CGCGCGTACATTAAAGGAAAAAG 59.463 43.478 24.19 0.00 0.00 2.27
83 84 3.186001 TCGCGCGTACATTAAAGGAAAAA 59.814 39.130 30.98 0.00 0.00 1.94
84 85 2.735663 TCGCGCGTACATTAAAGGAAAA 59.264 40.909 30.98 0.22 0.00 2.29
85 86 2.335752 TCGCGCGTACATTAAAGGAAA 58.664 42.857 30.98 1.00 0.00 3.13
86 87 1.993542 TCGCGCGTACATTAAAGGAA 58.006 45.000 30.98 1.54 0.00 3.36
87 88 1.855978 CATCGCGCGTACATTAAAGGA 59.144 47.619 30.98 5.67 0.00 3.36
88 89 1.070843 CCATCGCGCGTACATTAAAGG 60.071 52.381 30.98 11.12 0.00 3.11
89 90 1.070843 CCCATCGCGCGTACATTAAAG 60.071 52.381 30.98 5.08 0.00 1.85
90 91 0.931702 CCCATCGCGCGTACATTAAA 59.068 50.000 30.98 8.03 0.00 1.52
91 92 1.492319 GCCCATCGCGCGTACATTAA 61.492 55.000 30.98 8.92 0.00 1.40
92 93 1.952133 GCCCATCGCGCGTACATTA 60.952 57.895 30.98 9.80 0.00 1.90
93 94 3.269347 GCCCATCGCGCGTACATT 61.269 61.111 30.98 7.90 0.00 2.71
94 95 4.221422 AGCCCATCGCGCGTACAT 62.221 61.111 30.98 13.73 44.76 2.29
102 103 4.575973 ATCAGGCCAGCCCATCGC 62.576 66.667 5.01 0.00 36.58 4.58
103 104 1.895707 GAATCAGGCCAGCCCATCG 60.896 63.158 5.01 0.00 36.58 3.84
104 105 1.895707 CGAATCAGGCCAGCCCATC 60.896 63.158 5.01 0.00 36.58 3.51
105 106 1.344953 TACGAATCAGGCCAGCCCAT 61.345 55.000 5.01 0.00 36.58 4.00
106 107 1.971505 CTACGAATCAGGCCAGCCCA 61.972 60.000 5.01 0.00 36.58 5.36
107 108 1.227674 CTACGAATCAGGCCAGCCC 60.228 63.158 5.01 0.00 36.58 5.19
108 109 1.227674 CCTACGAATCAGGCCAGCC 60.228 63.158 5.01 0.00 0.00 4.85
109 110 4.445699 CCTACGAATCAGGCCAGC 57.554 61.111 5.01 0.00 0.00 4.85
121 122 1.202031 GGAATTTTGCTGTCGCCTACG 60.202 52.381 0.00 0.00 42.01 3.51
122 123 2.084546 AGGAATTTTGCTGTCGCCTAC 58.915 47.619 0.00 0.00 34.43 3.18
123 124 2.489938 AGGAATTTTGCTGTCGCCTA 57.510 45.000 0.00 0.00 34.43 3.93
124 125 1.541588 GAAGGAATTTTGCTGTCGCCT 59.458 47.619 0.00 0.00 34.43 5.52
125 126 1.269448 TGAAGGAATTTTGCTGTCGCC 59.731 47.619 0.00 0.00 34.43 5.54
126 127 2.589014 CTGAAGGAATTTTGCTGTCGC 58.411 47.619 0.00 0.00 0.00 5.19
127 128 2.227388 AGCTGAAGGAATTTTGCTGTCG 59.773 45.455 0.00 0.00 31.00 4.35
128 129 3.930634 AGCTGAAGGAATTTTGCTGTC 57.069 42.857 0.00 0.00 31.00 3.51
129 130 4.655963 TCTAGCTGAAGGAATTTTGCTGT 58.344 39.130 0.00 0.00 33.22 4.40
130 131 4.438472 GCTCTAGCTGAAGGAATTTTGCTG 60.438 45.833 0.00 0.00 38.21 4.41
131 132 3.693578 GCTCTAGCTGAAGGAATTTTGCT 59.306 43.478 0.00 0.00 38.21 3.91
132 133 3.441572 TGCTCTAGCTGAAGGAATTTTGC 59.558 43.478 0.00 0.00 42.66 3.68
133 134 5.633830 TTGCTCTAGCTGAAGGAATTTTG 57.366 39.130 0.00 0.00 42.66 2.44
134 135 4.157472 GCTTGCTCTAGCTGAAGGAATTTT 59.843 41.667 0.00 0.00 42.66 1.82
135 136 3.693578 GCTTGCTCTAGCTGAAGGAATTT 59.306 43.478 0.00 0.00 42.66 1.82
136 137 3.277715 GCTTGCTCTAGCTGAAGGAATT 58.722 45.455 0.00 0.00 42.66 2.17
137 138 2.916640 GCTTGCTCTAGCTGAAGGAAT 58.083 47.619 0.00 0.00 42.66 3.01
138 139 2.393271 GCTTGCTCTAGCTGAAGGAA 57.607 50.000 0.00 0.00 42.66 3.36
146 147 2.664424 CGAGACGATAGCTTGCTCTAGC 60.664 54.545 0.00 0.00 41.53 3.42
147 148 2.664424 GCGAGACGATAGCTTGCTCTAG 60.664 54.545 0.00 0.00 42.53 2.43
148 149 1.264557 GCGAGACGATAGCTTGCTCTA 59.735 52.381 0.00 0.00 42.53 2.43
149 150 0.030101 GCGAGACGATAGCTTGCTCT 59.970 55.000 0.00 0.00 42.53 4.09
150 151 2.501071 GCGAGACGATAGCTTGCTC 58.499 57.895 0.00 0.00 42.53 4.26
151 152 4.719997 GCGAGACGATAGCTTGCT 57.280 55.556 0.00 0.00 42.53 3.91
152 153 2.964911 AAGCGAGACGATAGCTTGC 58.035 52.632 10.68 7.43 46.63 4.01
155 156 2.733517 GCTTTAAGCGAGACGATAGCT 58.266 47.619 0.00 0.00 42.30 3.32
167 168 4.992381 TTCTTTGAGTCTCGCTTTAAGC 57.008 40.909 6.92 6.92 38.02 3.09
198 199 6.668541 ATATTGATATGTATCGCCTGTTGC 57.331 37.500 0.00 0.00 35.48 4.17
199 200 9.533253 TGATATATTGATATGTATCGCCTGTTG 57.467 33.333 0.00 0.00 37.56 3.33
200 201 9.755804 CTGATATATTGATATGTATCGCCTGTT 57.244 33.333 0.00 0.00 37.56 3.16
201 202 8.918116 ACTGATATATTGATATGTATCGCCTGT 58.082 33.333 0.00 0.00 37.56 4.00
202 203 9.404348 GACTGATATATTGATATGTATCGCCTG 57.596 37.037 0.00 0.00 37.56 4.85
203 204 8.293157 CGACTGATATATTGATATGTATCGCCT 58.707 37.037 0.00 0.00 37.56 5.52
204 205 7.539022 CCGACTGATATATTGATATGTATCGCC 59.461 40.741 0.00 0.00 37.56 5.54
205 206 7.539022 CCCGACTGATATATTGATATGTATCGC 59.461 40.741 0.00 0.00 37.56 4.58
206 207 7.539022 GCCCGACTGATATATTGATATGTATCG 59.461 40.741 0.00 0.00 37.56 2.92
218 219 2.828520 CCTGTCTGCCCGACTGATATAT 59.171 50.000 10.40 0.00 42.32 0.86
228 229 3.775654 GGACCTCCTGTCTGCCCG 61.776 72.222 0.00 0.00 43.89 6.13
238 239 3.400054 CCGGGACAAGGGACCTCC 61.400 72.222 0.00 0.00 0.00 4.30
317 318 3.575630 CGTTCCTATGTACGGATGGATG 58.424 50.000 0.00 0.00 32.36 3.51
318 319 3.936372 CGTTCCTATGTACGGATGGAT 57.064 47.619 0.00 0.00 32.36 3.41
425 426 3.304391 CCCAACTGTGTACGTCCAAATTG 60.304 47.826 0.00 0.00 0.00 2.32
428 429 1.209990 ACCCAACTGTGTACGTCCAAA 59.790 47.619 0.00 0.00 0.00 3.28
457 458 1.474478 ACGACCTGTGCTCTCATGTAG 59.526 52.381 0.00 0.00 0.00 2.74
477 486 1.514678 AAAGAAGCGGTTGATGCGCA 61.515 50.000 14.96 14.96 37.44 6.09
865 890 2.894126 GCGGAATGGAGGAGAAGATAGA 59.106 50.000 0.00 0.00 0.00 1.98
906 941 1.062047 GAGATCGAGCACGCACGTA 59.938 57.895 2.38 0.00 39.58 3.57
970 1005 1.061799 CGTTCACGTACGAAGGACCG 61.062 60.000 24.41 15.74 43.99 4.79
1129 1236 6.401153 GGTTAATCAATCGCCATAAGATCGTC 60.401 42.308 0.00 0.00 0.00 4.20
1163 1270 2.248135 CGTACCGGCTGCACACAAA 61.248 57.895 0.00 0.00 0.00 2.83
1220 1327 1.880894 CAGCAGTCCGTCCTCGTTA 59.119 57.895 0.00 0.00 35.01 3.18
1367 1474 0.327924 AATCTCCAACATGGCGACCA 59.672 50.000 0.00 1.01 33.58 4.02
1426 1534 0.319727 CCAGCCGCTGCAAAATGAAA 60.320 50.000 15.36 0.00 41.13 2.69
1701 1809 0.028770 CTCGGACGAGAAGCTAGCTG 59.971 60.000 20.16 8.23 44.53 4.24
1745 1855 1.016627 TCAGCTAATCAATGGCACGC 58.983 50.000 0.00 0.00 0.00 5.34
1746 1856 1.004610 CGTCAGCTAATCAATGGCACG 60.005 52.381 0.00 0.00 0.00 5.34
1747 1857 1.331756 CCGTCAGCTAATCAATGGCAC 59.668 52.381 0.00 0.00 0.00 5.01
1748 1858 1.667236 CCGTCAGCTAATCAATGGCA 58.333 50.000 0.00 0.00 0.00 4.92
1767 1877 4.517285 TGAGCAGGACAAGAACATTATCC 58.483 43.478 0.00 0.00 0.00 2.59
2186 2312 0.550914 AACAGGGAGTTGGTTGCAGA 59.449 50.000 0.00 0.00 39.49 4.26
2190 2316 1.333619 CGACAAACAGGGAGTTGGTTG 59.666 52.381 2.48 2.48 44.46 3.77
2199 2325 1.081892 CATCTCAGCGACAAACAGGG 58.918 55.000 0.00 0.00 0.00 4.45
2200 2326 1.081892 CCATCTCAGCGACAAACAGG 58.918 55.000 0.00 0.00 0.00 4.00
2217 2360 3.676605 TTCGTTCGCCTCTCGCCA 61.677 61.111 0.00 0.00 38.27 5.69
2234 2377 0.809385 ATGTGATCTCGTCCGTTCGT 59.191 50.000 0.00 0.00 0.00 3.85
2235 2378 1.583856 CAATGTGATCTCGTCCGTTCG 59.416 52.381 0.00 0.00 0.00 3.95
2236 2379 2.876091 TCAATGTGATCTCGTCCGTTC 58.124 47.619 0.00 0.00 0.00 3.95
2237 2380 3.526931 ATCAATGTGATCTCGTCCGTT 57.473 42.857 0.00 0.00 29.59 4.44
2238 2381 3.526931 AATCAATGTGATCTCGTCCGT 57.473 42.857 0.00 0.00 35.76 4.69
2239 2382 4.803613 TGTTAATCAATGTGATCTCGTCCG 59.196 41.667 0.00 0.00 35.76 4.79
2240 2383 6.456988 GGTTGTTAATCAATGTGATCTCGTCC 60.457 42.308 0.00 0.00 35.76 4.79
2241 2384 6.313905 AGGTTGTTAATCAATGTGATCTCGTC 59.686 38.462 0.00 0.00 35.76 4.20
2242 2385 6.173339 AGGTTGTTAATCAATGTGATCTCGT 58.827 36.000 0.00 0.00 35.76 4.18
2243 2386 6.668541 AGGTTGTTAATCAATGTGATCTCG 57.331 37.500 0.00 0.00 35.76 4.04
2244 2387 9.167311 AGTTAGGTTGTTAATCAATGTGATCTC 57.833 33.333 0.00 0.00 35.76 2.75
2284 2427 4.042062 ACCCGGCTAGTTAGTTAGGTTTTT 59.958 41.667 0.00 0.00 0.00 1.94
2285 2428 3.584406 ACCCGGCTAGTTAGTTAGGTTTT 59.416 43.478 0.00 0.00 0.00 2.43
2286 2429 3.176411 ACCCGGCTAGTTAGTTAGGTTT 58.824 45.455 0.00 0.00 0.00 3.27
2298 2441 3.556423 GGGATGTAATGTAACCCGGCTAG 60.556 52.174 0.00 0.00 0.00 3.42
2332 2475 2.632996 AGACTGGAGTGGTCATTTTCGA 59.367 45.455 0.00 0.00 36.29 3.71
2351 2494 4.223556 AGAGATGAGTAGTTGTCGGAGA 57.776 45.455 0.00 0.00 0.00 3.71
2352 2495 4.974368 AAGAGATGAGTAGTTGTCGGAG 57.026 45.455 0.00 0.00 0.00 4.63
2353 2496 5.010933 AGAAAGAGATGAGTAGTTGTCGGA 58.989 41.667 0.00 0.00 0.00 4.55
2355 2498 6.309251 GGAAAGAAAGAGATGAGTAGTTGTCG 59.691 42.308 0.00 0.00 0.00 4.35
2356 2499 6.309251 CGGAAAGAAAGAGATGAGTAGTTGTC 59.691 42.308 0.00 0.00 0.00 3.18
2357 2500 6.159988 CGGAAAGAAAGAGATGAGTAGTTGT 58.840 40.000 0.00 0.00 0.00 3.32
2380 3411 2.936498 AGATTTAGCAATCCCGTTCACG 59.064 45.455 0.00 0.00 39.95 4.35
2381 3412 3.938963 TGAGATTTAGCAATCCCGTTCAC 59.061 43.478 0.00 0.00 39.95 3.18
2383 3414 4.192317 ACTGAGATTTAGCAATCCCGTTC 58.808 43.478 0.00 0.00 39.95 3.95
2386 3417 2.797156 CGACTGAGATTTAGCAATCCCG 59.203 50.000 0.00 0.00 39.95 5.14
2388 3419 7.653713 TCTTAATCGACTGAGATTTAGCAATCC 59.346 37.037 7.99 0.00 39.95 3.01
2393 3424 7.995463 AAGTCTTAATCGACTGAGATTTAGC 57.005 36.000 0.00 6.05 43.14 3.09
2411 3587 3.251571 GGACGACGCTTGATTAAGTCTT 58.748 45.455 0.00 0.00 36.27 3.01
2412 3588 2.731341 CGGACGACGCTTGATTAAGTCT 60.731 50.000 0.00 0.00 36.27 3.24
2426 3602 1.153823 CCAGTGGATCACGGACGAC 60.154 63.158 1.68 0.00 39.64 4.34
2427 3603 0.683179 ATCCAGTGGATCACGGACGA 60.683 55.000 19.53 0.00 38.09 4.20
2453 6142 1.599797 CCTGGGAAAAGGCGACGTT 60.600 57.895 0.00 0.00 0.00 3.99
2499 6188 5.397109 GGGATGTTTAAGGGGTCGAATTAGA 60.397 44.000 0.00 0.00 0.00 2.10
2514 6203 1.877367 GCGCGTTTGGGGATGTTTA 59.123 52.632 8.43 0.00 0.00 2.01
2519 6208 4.690719 TCACGCGCGTTTGGGGAT 62.691 61.111 35.90 5.97 0.00 3.85
2547 6243 5.836705 TGGACAAATAGGGGATCAAAATGA 58.163 37.500 0.00 0.00 0.00 2.57
2556 6252 0.472471 GCGGATGGACAAATAGGGGA 59.528 55.000 0.00 0.00 0.00 4.81
2570 6266 2.406616 GGATTGTGGTTGCGCGGAT 61.407 57.895 8.83 0.00 0.00 4.18
2579 6275 6.542821 TGAGTAAGAAAATGAGGATTGTGGT 58.457 36.000 0.00 0.00 0.00 4.16
2599 6295 2.418746 GCAAGTGACCGGACATATGAGT 60.419 50.000 20.15 0.95 0.00 3.41
2658 6354 9.541143 GGACCACATTTTCTTTTTCTTTATTCA 57.459 29.630 0.00 0.00 0.00 2.57
2661 6357 7.151976 CCGGACCACATTTTCTTTTTCTTTAT 58.848 34.615 0.00 0.00 0.00 1.40
2662 6358 6.461788 CCCGGACCACATTTTCTTTTTCTTTA 60.462 38.462 0.73 0.00 0.00 1.85
2672 6371 1.102978 CCATCCCGGACCACATTTTC 58.897 55.000 0.73 0.00 36.56 2.29
2673 6372 0.324275 CCCATCCCGGACCACATTTT 60.324 55.000 0.73 0.00 36.56 1.82
2684 6383 4.157120 GGACACGGTCCCATCCCG 62.157 72.222 10.92 0.00 46.19 5.14
2696 6395 5.172934 TCATATTTCCAACACGTAGGACAC 58.827 41.667 3.31 0.00 32.62 3.67
2697 6396 5.408880 TCATATTTCCAACACGTAGGACA 57.591 39.130 3.31 0.00 32.62 4.02
2698 6397 4.270325 GCTCATATTTCCAACACGTAGGAC 59.730 45.833 3.31 0.00 32.62 3.85
2699 6398 4.081365 TGCTCATATTTCCAACACGTAGGA 60.081 41.667 0.00 0.00 0.00 2.94
2700 6399 4.188462 TGCTCATATTTCCAACACGTAGG 58.812 43.478 0.00 0.00 0.00 3.18
2701 6400 5.794687 TTGCTCATATTTCCAACACGTAG 57.205 39.130 0.00 0.00 0.00 3.51
2702 6401 6.751514 AATTGCTCATATTTCCAACACGTA 57.248 33.333 0.00 0.00 0.00 3.57
2703 6402 5.643379 AATTGCTCATATTTCCAACACGT 57.357 34.783 0.00 0.00 0.00 4.49
2704 6403 6.472163 GGTAAATTGCTCATATTTCCAACACG 59.528 38.462 0.00 0.00 0.00 4.49
2705 6404 7.319646 TGGTAAATTGCTCATATTTCCAACAC 58.680 34.615 0.00 0.00 0.00 3.32
2706 6405 7.473735 TGGTAAATTGCTCATATTTCCAACA 57.526 32.000 0.00 0.00 0.00 3.33
2707 6406 8.770438 TTTGGTAAATTGCTCATATTTCCAAC 57.230 30.769 0.00 0.00 35.01 3.77
2708 6407 9.381033 CATTTGGTAAATTGCTCATATTTCCAA 57.619 29.630 0.00 0.00 34.34 3.53
2709 6408 8.756927 TCATTTGGTAAATTGCTCATATTTCCA 58.243 29.630 0.00 0.00 0.00 3.53
2710 6409 9.768662 ATCATTTGGTAAATTGCTCATATTTCC 57.231 29.630 0.00 0.00 0.00 3.13
2772 6471 9.244799 CGCATGACTAGTTTTATCACTGTTATA 57.755 33.333 0.00 0.00 0.00 0.98
2773 6472 7.979537 TCGCATGACTAGTTTTATCACTGTTAT 59.020 33.333 0.00 0.00 0.00 1.89
2774 6473 7.317390 TCGCATGACTAGTTTTATCACTGTTA 58.683 34.615 0.00 0.00 0.00 2.41
2775 6474 6.163476 TCGCATGACTAGTTTTATCACTGTT 58.837 36.000 0.00 0.00 0.00 3.16
2776 6475 5.720202 TCGCATGACTAGTTTTATCACTGT 58.280 37.500 0.00 0.00 0.00 3.55
2777 6476 6.074088 GGATCGCATGACTAGTTTTATCACTG 60.074 42.308 0.00 0.00 0.00 3.66
2778 6477 5.986135 GGATCGCATGACTAGTTTTATCACT 59.014 40.000 0.00 0.00 0.00 3.41
2779 6478 5.107837 CGGATCGCATGACTAGTTTTATCAC 60.108 44.000 0.00 0.00 0.00 3.06
2780 6479 4.982295 CGGATCGCATGACTAGTTTTATCA 59.018 41.667 0.00 0.00 0.00 2.15
2781 6480 5.117287 GTCGGATCGCATGACTAGTTTTATC 59.883 44.000 0.00 0.00 0.00 1.75
2782 6481 4.982916 GTCGGATCGCATGACTAGTTTTAT 59.017 41.667 0.00 0.00 0.00 1.40
2783 6482 4.142337 TGTCGGATCGCATGACTAGTTTTA 60.142 41.667 0.00 0.00 33.81 1.52
2784 6483 3.187700 GTCGGATCGCATGACTAGTTTT 58.812 45.455 0.00 0.00 0.00 2.43
2785 6484 2.165641 TGTCGGATCGCATGACTAGTTT 59.834 45.455 0.00 0.00 33.81 2.66
2786 6485 1.749063 TGTCGGATCGCATGACTAGTT 59.251 47.619 0.00 0.00 33.81 2.24
2787 6486 1.335182 CTGTCGGATCGCATGACTAGT 59.665 52.381 0.00 0.00 33.81 2.57
2788 6487 1.604278 TCTGTCGGATCGCATGACTAG 59.396 52.381 0.00 0.00 33.81 2.57
2789 6488 1.604278 CTCTGTCGGATCGCATGACTA 59.396 52.381 0.00 0.00 33.81 2.59
2790 6489 0.383590 CTCTGTCGGATCGCATGACT 59.616 55.000 0.00 0.00 33.81 3.41
2791 6490 0.382158 TCTCTGTCGGATCGCATGAC 59.618 55.000 0.00 0.00 0.00 3.06
2792 6491 0.665298 CTCTCTGTCGGATCGCATGA 59.335 55.000 0.00 0.00 0.00 3.07
2793 6492 0.665298 TCTCTCTGTCGGATCGCATG 59.335 55.000 0.00 0.00 0.00 4.06
2794 6493 1.336440 CTTCTCTCTGTCGGATCGCAT 59.664 52.381 0.00 0.00 0.00 4.73
2795 6494 0.735471 CTTCTCTCTGTCGGATCGCA 59.265 55.000 0.00 0.00 0.00 5.10
2796 6495 0.030101 CCTTCTCTCTGTCGGATCGC 59.970 60.000 0.00 0.00 0.00 4.58
2797 6496 1.384525 ACCTTCTCTCTGTCGGATCG 58.615 55.000 0.00 0.00 0.00 3.69
2798 6497 4.985538 TTTACCTTCTCTCTGTCGGATC 57.014 45.455 0.00 0.00 0.00 3.36
2799 6498 6.380274 TGTTATTTACCTTCTCTCTGTCGGAT 59.620 38.462 0.00 0.00 0.00 4.18
2800 6499 5.713389 TGTTATTTACCTTCTCTCTGTCGGA 59.287 40.000 0.00 0.00 0.00 4.55
2801 6500 5.962433 TGTTATTTACCTTCTCTCTGTCGG 58.038 41.667 0.00 0.00 0.00 4.79
2802 6501 7.433719 CAGATGTTATTTACCTTCTCTCTGTCG 59.566 40.741 0.00 0.00 0.00 4.35
2803 6502 7.223777 GCAGATGTTATTTACCTTCTCTCTGTC 59.776 40.741 0.00 0.00 31.38 3.51
2804 6503 7.044798 GCAGATGTTATTTACCTTCTCTCTGT 58.955 38.462 0.00 0.00 31.38 3.41
2805 6504 7.044181 TGCAGATGTTATTTACCTTCTCTCTG 58.956 38.462 0.00 0.00 0.00 3.35
2806 6505 7.187824 TGCAGATGTTATTTACCTTCTCTCT 57.812 36.000 0.00 0.00 0.00 3.10
2807 6506 9.717942 ATATGCAGATGTTATTTACCTTCTCTC 57.282 33.333 0.00 0.00 0.00 3.20
2820 6519 9.489084 GGTTACAGTTCATATATGCAGATGTTA 57.511 33.333 7.92 2.28 0.00 2.41
2821 6520 7.992608 TGGTTACAGTTCATATATGCAGATGTT 59.007 33.333 7.92 0.00 0.00 2.71
2822 6521 7.508687 TGGTTACAGTTCATATATGCAGATGT 58.491 34.615 7.92 11.47 0.00 3.06
2823 6522 7.967890 TGGTTACAGTTCATATATGCAGATG 57.032 36.000 7.92 1.85 0.00 2.90
2824 6523 8.213679 ACTTGGTTACAGTTCATATATGCAGAT 58.786 33.333 7.92 0.00 0.00 2.90
2825 6524 7.564793 ACTTGGTTACAGTTCATATATGCAGA 58.435 34.615 7.92 0.00 0.00 4.26
2826 6525 7.792374 ACTTGGTTACAGTTCATATATGCAG 57.208 36.000 7.92 0.70 0.00 4.41
2827 6526 8.574251 AAACTTGGTTACAGTTCATATATGCA 57.426 30.769 7.92 0.00 0.00 3.96
2834 6533 9.877178 CTCTAGATAAACTTGGTTACAGTTCAT 57.123 33.333 0.00 0.00 0.00 2.57
2835 6534 7.817962 GCTCTAGATAAACTTGGTTACAGTTCA 59.182 37.037 0.00 0.00 0.00 3.18
2836 6535 7.817962 TGCTCTAGATAAACTTGGTTACAGTTC 59.182 37.037 0.00 0.00 0.00 3.01
2837 6536 7.676947 TGCTCTAGATAAACTTGGTTACAGTT 58.323 34.615 0.00 0.00 0.00 3.16
2838 6537 7.178628 TCTGCTCTAGATAAACTTGGTTACAGT 59.821 37.037 0.00 0.00 0.00 3.55
2839 6538 7.489757 GTCTGCTCTAGATAAACTTGGTTACAG 59.510 40.741 0.00 0.00 37.83 2.74
2840 6539 7.039293 TGTCTGCTCTAGATAAACTTGGTTACA 60.039 37.037 0.00 0.00 37.83 2.41
2841 6540 7.321153 TGTCTGCTCTAGATAAACTTGGTTAC 58.679 38.462 0.00 0.00 37.83 2.50
2842 6541 7.178628 ACTGTCTGCTCTAGATAAACTTGGTTA 59.821 37.037 0.00 0.00 37.83 2.85
2843 6542 6.014156 ACTGTCTGCTCTAGATAAACTTGGTT 60.014 38.462 0.00 0.00 37.83 3.67
2844 6543 5.482175 ACTGTCTGCTCTAGATAAACTTGGT 59.518 40.000 0.00 0.00 37.83 3.67
2845 6544 5.971763 ACTGTCTGCTCTAGATAAACTTGG 58.028 41.667 0.00 0.00 37.83 3.61
2846 6545 7.067615 TCCTACTGTCTGCTCTAGATAAACTTG 59.932 40.741 0.00 0.00 37.83 3.16
2847 6546 7.067737 GTCCTACTGTCTGCTCTAGATAAACTT 59.932 40.741 0.00 0.00 37.83 2.66
2848 6547 6.544564 GTCCTACTGTCTGCTCTAGATAAACT 59.455 42.308 0.00 0.00 37.83 2.66
2849 6548 6.319152 TGTCCTACTGTCTGCTCTAGATAAAC 59.681 42.308 0.00 0.00 37.83 2.01
2850 6549 6.424032 TGTCCTACTGTCTGCTCTAGATAAA 58.576 40.000 0.00 0.00 37.83 1.40
2851 6550 6.002653 TGTCCTACTGTCTGCTCTAGATAA 57.997 41.667 0.00 0.00 37.83 1.75
2852 6551 5.632034 TGTCCTACTGTCTGCTCTAGATA 57.368 43.478 0.00 0.00 37.83 1.98
2853 6552 4.511786 TGTCCTACTGTCTGCTCTAGAT 57.488 45.455 0.00 0.00 37.83 1.98
2854 6553 4.263550 ACTTGTCCTACTGTCTGCTCTAGA 60.264 45.833 0.00 0.00 0.00 2.43
2855 6554 4.013728 ACTTGTCCTACTGTCTGCTCTAG 58.986 47.826 0.00 0.00 0.00 2.43
2856 6555 4.035612 ACTTGTCCTACTGTCTGCTCTA 57.964 45.455 0.00 0.00 0.00 2.43
2857 6556 2.883026 ACTTGTCCTACTGTCTGCTCT 58.117 47.619 0.00 0.00 0.00 4.09
2858 6557 3.669251 AACTTGTCCTACTGTCTGCTC 57.331 47.619 0.00 0.00 0.00 4.26
2859 6558 3.388024 TGAAACTTGTCCTACTGTCTGCT 59.612 43.478 0.00 0.00 0.00 4.24
2860 6559 3.728845 TGAAACTTGTCCTACTGTCTGC 58.271 45.455 0.00 0.00 0.00 4.26
2861 6560 9.254133 CATATATGAAACTTGTCCTACTGTCTG 57.746 37.037 6.92 0.00 0.00 3.51
2862 6561 9.201989 TCATATATGAAACTTGTCCTACTGTCT 57.798 33.333 13.12 0.00 33.08 3.41
2863 6562 9.817809 TTCATATATGAAACTTGTCCTACTGTC 57.182 33.333 22.95 0.00 43.26 3.51
2864 6563 9.823647 CTTCATATATGAAACTTGTCCTACTGT 57.176 33.333 24.61 0.00 45.26 3.55
2865 6564 9.823647 ACTTCATATATGAAACTTGTCCTACTG 57.176 33.333 24.61 13.01 45.26 2.74
2886 6585 9.032624 GCCCTATATATGTTAGGTTCTACTTCA 57.967 37.037 10.87 0.00 35.42 3.02
2887 6586 9.032624 TGCCCTATATATGTTAGGTTCTACTTC 57.967 37.037 10.87 0.00 35.42 3.01
2888 6587 8.967779 TGCCCTATATATGTTAGGTTCTACTT 57.032 34.615 10.87 0.00 35.42 2.24
2889 6588 8.967779 TTGCCCTATATATGTTAGGTTCTACT 57.032 34.615 10.87 0.00 35.42 2.57
2890 6589 9.433153 GTTTGCCCTATATATGTTAGGTTCTAC 57.567 37.037 10.87 3.44 35.42 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.