Multiple sequence alignment - TraesCS5D01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G340600 chr5D 100.000 3145 0 0 1 3145 429060925 429057781 0.000000e+00 5808.0
1 TraesCS5D01G340600 chr5D 84.038 639 83 10 1037 1664 429150814 429150184 5.810000e-167 597.0
2 TraesCS5D01G340600 chr5D 80.848 731 100 17 941 1664 439737298 439736601 3.570000e-149 538.0
3 TraesCS5D01G340600 chr5D 78.657 670 75 26 1708 2328 439736601 439735951 1.770000e-102 383.0
4 TraesCS5D01G340600 chr5D 78.395 648 79 24 1708 2315 440063930 440063304 6.410000e-97 364.0
5 TraesCS5D01G340600 chr5D 77.316 626 85 25 1708 2306 429150184 429149589 1.820000e-82 316.0
6 TraesCS5D01G340600 chr5A 95.206 1043 46 3 1 1042 544804831 544803792 0.000000e+00 1646.0
7 TraesCS5D01G340600 chr5A 95.801 905 33 2 1708 2611 544749202 544748302 0.000000e+00 1456.0
8 TraesCS5D01G340600 chr5A 95.691 905 34 2 1708 2611 544727611 544726711 0.000000e+00 1450.0
9 TraesCS5D01G340600 chr5A 95.691 905 34 2 1708 2611 544771230 544770330 0.000000e+00 1450.0
10 TraesCS5D01G340600 chr5A 95.691 905 33 4 1708 2611 544793539 544792640 0.000000e+00 1450.0
11 TraesCS5D01G340600 chr5A 95.200 625 24 2 1040 1664 544794157 544793539 0.000000e+00 983.0
12 TraesCS5D01G340600 chr5A 95.040 625 24 2 1040 1664 544728228 544727611 0.000000e+00 976.0
13 TraesCS5D01G340600 chr5A 95.040 625 24 2 1040 1664 544771847 544771230 0.000000e+00 976.0
14 TraesCS5D01G340600 chr5A 94.720 625 26 2 1040 1664 544749819 544749202 0.000000e+00 965.0
15 TraesCS5D01G340600 chr5A 84.639 638 81 7 1037 1664 545048864 545048234 1.240000e-173 619.0
16 TraesCS5D01G340600 chrUn 95.770 851 31 2 1762 2611 447561118 447560272 0.000000e+00 1367.0
17 TraesCS5D01G340600 chrUn 100.000 47 0 0 1663 1709 273237452 273237498 1.550000e-13 87.9
18 TraesCS5D01G340600 chr5B 84.796 638 80 10 1037 1664 518319713 518319083 2.660000e-175 625.0
19 TraesCS5D01G340600 chr5B 79.718 922 138 32 766 1662 534679226 534678329 3.450000e-174 621.0
20 TraesCS5D01G340600 chr5B 78.618 608 70 21 2556 3145 534641460 534640895 6.460000e-92 348.0
21 TraesCS5D01G340600 chr5B 77.008 635 94 24 1707 2310 534678328 534677715 1.820000e-82 316.0
22 TraesCS5D01G340600 chr5B 76.537 618 110 24 1708 2306 518319083 518318482 3.940000e-79 305.0
23 TraesCS5D01G340600 chr5B 78.554 401 39 18 1835 2205 534642566 534642183 1.470000e-53 220.0
24 TraesCS5D01G340600 chr4D 100.000 47 0 0 1663 1709 123577243 123577289 1.550000e-13 87.9
25 TraesCS5D01G340600 chr4D 79.808 104 21 0 1 104 241733979 241733876 3.360000e-10 76.8
26 TraesCS5D01G340600 chr4B 100.000 47 0 0 1663 1709 209150950 209150904 1.550000e-13 87.9
27 TraesCS5D01G340600 chr3D 100.000 47 0 0 1663 1709 202610601 202610647 1.550000e-13 87.9
28 TraesCS5D01G340600 chr3D 100.000 47 0 0 1663 1709 249995810 249995764 1.550000e-13 87.9
29 TraesCS5D01G340600 chr2D 100.000 47 0 0 1663 1709 39605910 39605956 1.550000e-13 87.9
30 TraesCS5D01G340600 chr2D 100.000 47 0 0 1663 1709 429493527 429493481 1.550000e-13 87.9
31 TraesCS5D01G340600 chr2D 100.000 47 0 0 1663 1709 635035915 635035961 1.550000e-13 87.9
32 TraesCS5D01G340600 chr1A 100.000 47 0 0 1663 1709 334078266 334078220 1.550000e-13 87.9
33 TraesCS5D01G340600 chr7B 80.000 100 16 4 1 98 157300867 157300964 1.560000e-08 71.3
34 TraesCS5D01G340600 chr7B 93.023 43 3 0 56 98 404039611 404039653 2.620000e-06 63.9
35 TraesCS5D01G340600 chr3B 78.641 103 18 4 1 101 583478240 583478140 7.280000e-07 65.8
36 TraesCS5D01G340600 chr6A 92.857 42 3 0 65 106 511678540 511678499 9.420000e-06 62.1
37 TraesCS5D01G340600 chr6A 100.000 30 0 0 77 106 122122345 122122316 4.380000e-04 56.5
38 TraesCS5D01G340600 chr7D 90.909 44 3 1 64 106 382544030 382543987 1.220000e-04 58.4
39 TraesCS5D01G340600 chr7D 100.000 30 0 0 77 106 632678646 632678617 4.380000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G340600 chr5D 429057781 429060925 3144 True 5808.0 5808 100.0000 1 3145 1 chr5D.!!$R1 3144
1 TraesCS5D01G340600 chr5D 439735951 439737298 1347 True 460.5 538 79.7525 941 2328 2 chr5D.!!$R4 1387
2 TraesCS5D01G340600 chr5D 429149589 429150814 1225 True 456.5 597 80.6770 1037 2306 2 chr5D.!!$R3 1269
3 TraesCS5D01G340600 chr5D 440063304 440063930 626 True 364.0 364 78.3950 1708 2315 1 chr5D.!!$R2 607
4 TraesCS5D01G340600 chr5A 544803792 544804831 1039 True 1646.0 1646 95.2060 1 1042 1 chr5A.!!$R1 1041
5 TraesCS5D01G340600 chr5A 544792640 544794157 1517 True 1216.5 1450 95.4455 1040 2611 2 chr5A.!!$R6 1571
6 TraesCS5D01G340600 chr5A 544726711 544728228 1517 True 1213.0 1450 95.3655 1040 2611 2 chr5A.!!$R3 1571
7 TraesCS5D01G340600 chr5A 544770330 544771847 1517 True 1213.0 1450 95.3655 1040 2611 2 chr5A.!!$R5 1571
8 TraesCS5D01G340600 chr5A 544748302 544749819 1517 True 1210.5 1456 95.2605 1040 2611 2 chr5A.!!$R4 1571
9 TraesCS5D01G340600 chr5A 545048234 545048864 630 True 619.0 619 84.6390 1037 1664 1 chr5A.!!$R2 627
10 TraesCS5D01G340600 chrUn 447560272 447561118 846 True 1367.0 1367 95.7700 1762 2611 1 chrUn.!!$R1 849
11 TraesCS5D01G340600 chr5B 534677715 534679226 1511 True 468.5 621 78.3630 766 2310 2 chr5B.!!$R3 1544
12 TraesCS5D01G340600 chr5B 518318482 518319713 1231 True 465.0 625 80.6665 1037 2306 2 chr5B.!!$R1 1269
13 TraesCS5D01G340600 chr5B 534640895 534642566 1671 True 284.0 348 78.5860 1835 3145 2 chr5B.!!$R2 1310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.035630 CCAGCTCAGACCTCCTTTGG 60.036 60.0 0.00 0.00 0.00 3.28 F
1662 1702 0.039527 ATTGCTTTCGGAACCGCAAC 60.040 50.0 21.58 0.82 44.07 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1839 0.413037 TCCCTGCAAAATGGATGGGT 59.587 50.0 3.55 0.0 36.23 4.51 R
2899 3433 0.035056 CACAGGAGAATGACCCCACC 60.035 60.0 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.179097 GTCGGATCTGGGCAGAAGTC 60.179 60.000 0.62 0.00 41.36 3.01
36 37 1.522580 GATCTGGGCAGAAGTCCGC 60.523 63.158 0.00 0.00 44.71 5.54
55 56 1.071605 CGCGAGTTTGGGAGAAAGAG 58.928 55.000 0.00 0.00 0.00 2.85
58 59 2.689646 CGAGTTTGGGAGAAAGAGTCC 58.310 52.381 0.00 0.00 0.00 3.85
83 84 0.035630 CCAGCTCAGACCTCCTTTGG 60.036 60.000 0.00 0.00 0.00 3.28
140 141 4.814771 GGAAGACGATCCGATGGTAAAAAT 59.185 41.667 0.00 0.00 0.00 1.82
161 162 2.771688 TCCGGGGGATACAAGAAAGAT 58.228 47.619 0.00 0.00 39.74 2.40
175 176 5.109903 CAAGAAAGATACCCTAACCGTCAG 58.890 45.833 0.00 0.00 0.00 3.51
208 209 2.716017 CCTCGCTCCCCTCTGTGTC 61.716 68.421 0.00 0.00 0.00 3.67
221 222 1.968493 TCTGTGTCTAACCACCACTCC 59.032 52.381 0.00 0.00 34.35 3.85
253 254 1.966845 CAGAGGGGAGGGGTTTTCTA 58.033 55.000 0.00 0.00 0.00 2.10
256 257 1.560146 GAGGGGAGGGGTTTTCTAGTG 59.440 57.143 0.00 0.00 0.00 2.74
290 291 6.699642 TGCATGTAAGAAGTTTTTGGCTAAAC 59.300 34.615 0.00 7.44 38.09 2.01
380 381 4.517285 TGAAGGAGAAGATGTGCAATACC 58.483 43.478 0.00 0.00 0.00 2.73
405 406 0.179197 GAAGACGATGTCGAGACGCA 60.179 55.000 9.67 0.00 43.02 5.24
458 459 2.108566 CCTCTGCAGAGATGGGCG 59.891 66.667 39.34 20.84 44.74 6.13
519 520 1.230635 TGGCTTTTCGCTCTGACAGC 61.231 55.000 0.00 0.00 45.85 4.40
541 542 3.515901 CCACTCAGGTTACTTAGCTTCCT 59.484 47.826 0.00 0.00 30.51 3.36
561 562 4.796231 CCGAAGGCAGGGACGTCG 62.796 72.222 9.92 0.32 46.14 5.12
662 664 3.476552 AGAAGTTTCTGCGATTTGGACA 58.523 40.909 0.00 0.00 35.89 4.02
665 667 2.151202 GTTTCTGCGATTTGGACAGGA 58.849 47.619 0.00 0.00 32.19 3.86
684 686 2.960384 GGAACTAGGGCTAGAGGAAGAC 59.040 54.545 0.00 0.00 36.97 3.01
699 701 2.189342 GAAGACGATGAAGAAGAGCCG 58.811 52.381 0.00 0.00 0.00 5.52
763 765 1.779569 ATGTCAGACGACCGTCAAAC 58.220 50.000 22.26 18.49 46.76 2.93
770 772 2.100252 AGACGACCGTCAAACTCTTTGA 59.900 45.455 22.26 0.00 46.68 2.69
802 804 1.323271 ATCGCTCTCATGGTGACGGT 61.323 55.000 0.00 0.00 0.00 4.83
980 1003 0.782384 CCGAACACTACGCACACTTC 59.218 55.000 0.00 0.00 0.00 3.01
992 1015 1.677217 GCACACTTCTCCTAGCCCAAG 60.677 57.143 0.00 0.00 0.00 3.61
1239 1262 2.282674 TACGGCACTCTCCACGGT 60.283 61.111 0.00 0.00 0.00 4.83
1272 1298 2.809601 GTCGGCCACTACTGCGTG 60.810 66.667 2.24 0.00 34.71 5.34
1383 1409 2.719979 GTCGCCGCTCGGAATCTA 59.280 61.111 13.11 0.00 39.05 1.98
1476 1504 2.962569 CTCGTCTTCGACAGGGCA 59.037 61.111 0.00 0.00 41.35 5.36
1477 1505 1.153939 CTCGTCTTCGACAGGGCAG 60.154 63.158 0.00 0.00 41.35 4.85
1631 1671 2.227388 GCATGTCAAACTTCAGGGTGAG 59.773 50.000 0.00 0.00 0.00 3.51
1632 1672 1.967319 TGTCAAACTTCAGGGTGAGC 58.033 50.000 0.00 0.00 0.00 4.26
1662 1702 0.039527 ATTGCTTTCGGAACCGCAAC 60.040 50.000 21.58 0.82 44.07 4.17
1663 1703 2.127383 GCTTTCGGAACCGCAACG 60.127 61.111 8.48 3.63 39.59 4.10
1675 1715 2.827604 CGCAACGGATCTGTGAAGT 58.172 52.632 8.25 0.00 0.00 3.01
1676 1716 1.148310 CGCAACGGATCTGTGAAGTT 58.852 50.000 8.25 0.00 0.00 2.66
1677 1717 1.126846 CGCAACGGATCTGTGAAGTTC 59.873 52.381 8.25 0.00 0.00 3.01
1678 1718 2.143122 GCAACGGATCTGTGAAGTTCA 58.857 47.619 8.25 0.08 0.00 3.18
1679 1719 2.158449 GCAACGGATCTGTGAAGTTCAG 59.842 50.000 8.25 0.00 0.00 3.02
1680 1720 2.738846 CAACGGATCTGTGAAGTTCAGG 59.261 50.000 8.25 2.67 34.15 3.86
1681 1721 1.971357 ACGGATCTGTGAAGTTCAGGT 59.029 47.619 6.33 0.00 34.15 4.00
1682 1722 2.368875 ACGGATCTGTGAAGTTCAGGTT 59.631 45.455 6.33 0.00 34.15 3.50
1683 1723 3.181454 ACGGATCTGTGAAGTTCAGGTTT 60.181 43.478 6.33 0.00 34.15 3.27
1684 1724 3.815401 CGGATCTGTGAAGTTCAGGTTTT 59.185 43.478 5.62 0.00 34.15 2.43
1685 1725 4.319766 CGGATCTGTGAAGTTCAGGTTTTG 60.320 45.833 5.62 0.00 34.15 2.44
1686 1726 4.022849 GGATCTGTGAAGTTCAGGTTTTGG 60.023 45.833 5.62 0.00 34.15 3.28
1687 1727 4.229304 TCTGTGAAGTTCAGGTTTTGGA 57.771 40.909 5.62 0.00 34.15 3.53
1688 1728 4.199310 TCTGTGAAGTTCAGGTTTTGGAG 58.801 43.478 5.62 0.00 34.15 3.86
1689 1729 3.947834 CTGTGAAGTTCAGGTTTTGGAGT 59.052 43.478 5.62 0.00 0.00 3.85
1690 1730 5.104693 TCTGTGAAGTTCAGGTTTTGGAGTA 60.105 40.000 5.62 0.00 34.15 2.59
1691 1731 5.123227 TGTGAAGTTCAGGTTTTGGAGTAG 58.877 41.667 5.62 0.00 0.00 2.57
1692 1732 5.104693 TGTGAAGTTCAGGTTTTGGAGTAGA 60.105 40.000 5.62 0.00 0.00 2.59
1693 1733 5.467063 GTGAAGTTCAGGTTTTGGAGTAGAG 59.533 44.000 5.62 0.00 0.00 2.43
1694 1734 4.625607 AGTTCAGGTTTTGGAGTAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
1695 1735 3.974642 AGTTCAGGTTTTGGAGTAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
1696 1736 4.040584 AGTTCAGGTTTTGGAGTAGAGGTC 59.959 45.833 0.00 0.00 0.00 3.85
1697 1737 3.583228 TCAGGTTTTGGAGTAGAGGTCA 58.417 45.455 0.00 0.00 0.00 4.02
1698 1738 3.578716 TCAGGTTTTGGAGTAGAGGTCAG 59.421 47.826 0.00 0.00 0.00 3.51
1699 1739 3.578716 CAGGTTTTGGAGTAGAGGTCAGA 59.421 47.826 0.00 0.00 0.00 3.27
1700 1740 3.835395 AGGTTTTGGAGTAGAGGTCAGAG 59.165 47.826 0.00 0.00 0.00 3.35
1701 1741 3.055747 GGTTTTGGAGTAGAGGTCAGAGG 60.056 52.174 0.00 0.00 0.00 3.69
1702 1742 1.853963 TTGGAGTAGAGGTCAGAGGC 58.146 55.000 0.00 0.00 0.00 4.70
1703 1743 1.003646 TGGAGTAGAGGTCAGAGGCT 58.996 55.000 0.00 0.00 0.00 4.58
1704 1744 2.206223 TGGAGTAGAGGTCAGAGGCTA 58.794 52.381 0.00 0.00 0.00 3.93
1705 1745 2.173782 TGGAGTAGAGGTCAGAGGCTAG 59.826 54.545 0.00 0.00 0.00 3.42
1799 1839 1.682849 CCCGGACATGGAGTTGGAA 59.317 57.895 0.73 0.00 0.00 3.53
1908 1958 2.737252 GAGCTTACCTGTTTTCTCGTGG 59.263 50.000 0.00 0.00 0.00 4.94
2017 2074 0.107508 TGCTTGTCCTAGCTGCATCC 60.108 55.000 1.02 0.00 41.76 3.51
2020 2077 1.409064 CTTGTCCTAGCTGCATCCGTA 59.591 52.381 1.02 0.00 0.00 4.02
2070 2155 2.237392 AGGTTCTGAACTCCATAGCACC 59.763 50.000 19.05 0.37 0.00 5.01
2071 2156 2.027192 GGTTCTGAACTCCATAGCACCA 60.027 50.000 19.05 0.00 0.00 4.17
2072 2157 3.370953 GGTTCTGAACTCCATAGCACCAT 60.371 47.826 19.05 0.00 0.00 3.55
2073 2158 3.548745 TCTGAACTCCATAGCACCATG 57.451 47.619 0.00 0.00 0.00 3.66
2128 2213 4.507756 GTGGCAAACAATTTCAGAAGTTCC 59.492 41.667 0.00 0.00 0.00 3.62
2182 2271 6.773200 TCAGTACATTGGATGGTTTGTTGTTA 59.227 34.615 0.00 0.00 33.60 2.41
2334 2432 3.227614 TGCTGATGTAGTATTCGGGCTA 58.772 45.455 0.00 0.00 0.00 3.93
2335 2433 3.005472 TGCTGATGTAGTATTCGGGCTAC 59.995 47.826 0.00 0.00 38.35 3.58
2387 2914 4.039973 AGAACAATGACGGGAGAAACACTA 59.960 41.667 0.00 0.00 0.00 2.74
2396 2923 2.094130 GGGAGAAACACTAACGAGAGGG 60.094 54.545 0.00 0.00 0.00 4.30
2440 2967 7.178451 AGTTGGTGGTATAAATTCCTTTCTTGG 59.822 37.037 0.00 0.00 0.00 3.61
2490 3023 8.836413 GTGCAGCTTAAACAATATTCCATACTA 58.164 33.333 0.00 0.00 0.00 1.82
2529 3062 6.017400 TGAAATTCCTGAAGCAGCTTTAAG 57.983 37.500 9.62 10.18 0.00 1.85
2530 3063 5.769662 TGAAATTCCTGAAGCAGCTTTAAGA 59.230 36.000 9.62 1.09 0.00 2.10
2538 3071 7.230510 TCCTGAAGCAGCTTTAAGAAAAATGTA 59.769 33.333 9.62 0.00 0.00 2.29
2612 3145 4.545208 TCATCTGGTTAATTGACCGTCA 57.455 40.909 14.16 0.00 42.83 4.35
2614 3147 2.695359 TCTGGTTAATTGACCGTCAGC 58.305 47.619 14.16 0.00 42.83 4.26
2625 3158 4.988598 CGTCAGCGTTGCCACCCT 62.989 66.667 0.00 0.00 0.00 4.34
2626 3159 2.594592 GTCAGCGTTGCCACCCTT 60.595 61.111 0.00 0.00 0.00 3.95
2627 3160 1.302192 GTCAGCGTTGCCACCCTTA 60.302 57.895 0.00 0.00 0.00 2.69
2628 3161 1.302192 TCAGCGTTGCCACCCTTAC 60.302 57.895 0.00 0.00 0.00 2.34
2629 3162 2.033602 AGCGTTGCCACCCTTACC 59.966 61.111 0.00 0.00 0.00 2.85
2630 3163 2.281900 GCGTTGCCACCCTTACCA 60.282 61.111 0.00 0.00 0.00 3.25
2649 3182 2.834549 CCATATAGGCAGGGTGTCCTAG 59.165 54.545 0.00 0.00 42.67 3.02
2655 3188 1.498176 GCAGGGTGTCCTAGGGGTTT 61.498 60.000 9.46 0.00 42.67 3.27
2656 3189 1.073098 CAGGGTGTCCTAGGGGTTTT 58.927 55.000 9.46 0.00 42.67 2.43
2663 3196 5.221864 GGGTGTCCTAGGGGTTTTATAGATG 60.222 48.000 9.46 0.00 0.00 2.90
2680 3213 6.909550 ATAGATGTAGAGGTCAGGAATGAC 57.090 41.667 0.00 0.00 38.04 3.06
2681 3214 4.614475 AGATGTAGAGGTCAGGAATGACA 58.386 43.478 10.29 0.00 40.38 3.58
2684 3217 4.894784 TGTAGAGGTCAGGAATGACAAAC 58.105 43.478 10.29 3.59 40.38 2.93
2688 3221 7.618117 TGTAGAGGTCAGGAATGACAAACTATA 59.382 37.037 10.29 6.10 40.38 1.31
2689 3222 7.496346 AGAGGTCAGGAATGACAAACTATAA 57.504 36.000 10.29 0.00 40.38 0.98
2690 3223 7.331791 AGAGGTCAGGAATGACAAACTATAAC 58.668 38.462 10.29 0.00 40.38 1.89
2693 3226 7.038302 AGGTCAGGAATGACAAACTATAACTGA 60.038 37.037 10.29 0.00 40.38 3.41
2724 3257 3.776417 TCAGACCTGATCCATCACATTCA 59.224 43.478 0.00 0.00 34.14 2.57
2725 3258 4.225717 TCAGACCTGATCCATCACATTCAA 59.774 41.667 0.00 0.00 34.14 2.69
2727 3260 5.008712 CAGACCTGATCCATCACATTCAATG 59.991 44.000 0.00 0.00 32.50 2.82
2728 3261 3.635373 ACCTGATCCATCACATTCAATGC 59.365 43.478 0.00 0.00 32.50 3.56
2729 3262 3.634910 CCTGATCCATCACATTCAATGCA 59.365 43.478 0.00 0.00 32.50 3.96
2730 3263 4.280929 CCTGATCCATCACATTCAATGCAT 59.719 41.667 0.00 0.00 32.50 3.96
2731 3264 5.475564 CCTGATCCATCACATTCAATGCATA 59.524 40.000 0.00 0.00 32.50 3.14
2732 3265 6.152831 CCTGATCCATCACATTCAATGCATAT 59.847 38.462 0.00 0.00 32.50 1.78
2748 3281 9.214957 TCAATGCATATTTCTACCTATAAACCG 57.785 33.333 0.00 0.00 0.00 4.44
2770 3303 0.399376 ATGGTCTACCCGGCCATACA 60.399 55.000 8.62 0.00 40.83 2.29
2771 3304 1.046472 TGGTCTACCCGGCCATACAG 61.046 60.000 2.24 0.00 35.15 2.74
2801 3334 3.869272 CGCGAGCAATCTGTGGCC 61.869 66.667 0.00 0.00 0.00 5.36
2802 3335 2.747460 GCGAGCAATCTGTGGCCA 60.747 61.111 0.00 0.00 0.00 5.36
2804 3337 1.376424 CGAGCAATCTGTGGCCACT 60.376 57.895 34.75 14.54 0.00 4.00
2817 3351 2.418976 GTGGCCACTCGATCTTTTTACC 59.581 50.000 29.12 0.00 0.00 2.85
2818 3352 1.664151 GGCCACTCGATCTTTTTACCG 59.336 52.381 0.00 0.00 0.00 4.02
2819 3353 2.344025 GCCACTCGATCTTTTTACCGT 58.656 47.619 0.00 0.00 0.00 4.83
2828 3362 5.066246 TCGATCTTTTTACCGTGGTTGTTTT 59.934 36.000 0.00 0.00 0.00 2.43
2829 3363 5.744819 CGATCTTTTTACCGTGGTTGTTTTT 59.255 36.000 0.00 0.00 0.00 1.94
2830 3364 6.911511 CGATCTTTTTACCGTGGTTGTTTTTA 59.088 34.615 0.00 0.00 0.00 1.52
2831 3365 7.592164 CGATCTTTTTACCGTGGTTGTTTTTAT 59.408 33.333 0.00 0.00 0.00 1.40
2832 3366 8.806177 ATCTTTTTACCGTGGTTGTTTTTATC 57.194 30.769 0.00 0.00 0.00 1.75
2833 3367 6.911511 TCTTTTTACCGTGGTTGTTTTTATCG 59.088 34.615 0.00 0.00 0.00 2.92
2834 3368 2.691984 ACCGTGGTTGTTTTTATCGC 57.308 45.000 0.00 0.00 0.00 4.58
2835 3369 2.223745 ACCGTGGTTGTTTTTATCGCT 58.776 42.857 0.00 0.00 0.00 4.93
2836 3370 2.031508 ACCGTGGTTGTTTTTATCGCTG 60.032 45.455 0.00 0.00 0.00 5.18
2837 3371 2.031508 CCGTGGTTGTTTTTATCGCTGT 60.032 45.455 0.00 0.00 0.00 4.40
2838 3372 2.970609 CGTGGTTGTTTTTATCGCTGTG 59.029 45.455 0.00 0.00 0.00 3.66
2839 3373 3.547214 CGTGGTTGTTTTTATCGCTGTGT 60.547 43.478 0.00 0.00 0.00 3.72
2840 3374 3.972502 GTGGTTGTTTTTATCGCTGTGTC 59.027 43.478 0.00 0.00 0.00 3.67
2851 3385 3.117171 CTGTGTCAGCTGCTCGGC 61.117 66.667 9.47 0.00 0.00 5.54
2860 3394 2.892425 CTGCTCGGCCGTTCATCC 60.892 66.667 27.15 8.62 0.00 3.51
2870 3404 1.467374 GCCGTTCATCCATTTTCCACG 60.467 52.381 0.00 0.00 0.00 4.94
2878 3412 4.398598 ATTTTCCACGCACGCGCC 62.399 61.111 12.02 0.00 44.19 6.53
2897 3431 0.110678 CTGGGCTGATGCTGGATGAT 59.889 55.000 0.00 0.00 39.59 2.45
2899 3433 0.959553 GGGCTGATGCTGGATGATTG 59.040 55.000 0.00 0.00 39.59 2.67
2904 3438 1.325355 GATGCTGGATGATTGGTGGG 58.675 55.000 0.00 0.00 0.00 4.61
2908 3442 0.625316 CTGGATGATTGGTGGGGTCA 59.375 55.000 0.00 0.00 0.00 4.02
2920 3454 1.207488 TGGGGTCATTCTCCTGTGGG 61.207 60.000 0.00 0.00 37.63 4.61
2922 3456 1.609783 GGTCATTCTCCTGTGGGGG 59.390 63.158 0.00 0.00 35.33 5.40
2923 3457 1.077429 GTCATTCTCCTGTGGGGGC 60.077 63.158 0.00 0.00 35.33 5.80
2927 3461 0.846427 ATTCTCCTGTGGGGGCAAGA 60.846 55.000 0.00 0.00 35.33 3.02
2930 3464 1.229951 TCCTGTGGGGGCAAGAGAT 60.230 57.895 0.00 0.00 35.33 2.75
2951 3496 0.877213 GTGGCTGGTTTGACGTACGT 60.877 55.000 23.04 23.04 0.00 3.57
2958 3503 2.159268 TGGTTTGACGTACGTGAACTGA 60.159 45.455 28.16 16.16 0.00 3.41
2965 3510 1.699343 GTACGTGAACTGAGAGGTGC 58.301 55.000 0.00 0.00 0.00 5.01
2977 3522 2.043248 AGGTGCGGGGTAGATCGT 60.043 61.111 0.00 0.00 0.00 3.73
2982 3527 2.171725 GCGGGGTAGATCGTGTTGC 61.172 63.158 0.00 0.00 0.00 4.17
3054 3604 2.042831 GCATGCTCTCCACCACCAC 61.043 63.158 11.37 0.00 0.00 4.16
3055 3605 1.377725 CATGCTCTCCACCACCACC 60.378 63.158 0.00 0.00 0.00 4.61
3056 3606 1.847506 ATGCTCTCCACCACCACCA 60.848 57.895 0.00 0.00 0.00 4.17
3058 3608 2.750350 CTCTCCACCACCACCACC 59.250 66.667 0.00 0.00 0.00 4.61
3059 3609 2.040359 TCTCCACCACCACCACCA 60.040 61.111 0.00 0.00 0.00 4.17
3060 3610 2.113139 CTCCACCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
3061 3611 3.825160 CTCCACCACCACCACCACG 62.825 68.421 0.00 0.00 0.00 4.94
3091 3641 2.103934 CGCTTCTCTGCTCCTCCG 59.896 66.667 0.00 0.00 0.00 4.63
3096 3646 0.613292 TTCTCTGCTCCTCCGCTCTT 60.613 55.000 0.00 0.00 0.00 2.85
3104 3654 1.825474 CTCCTCCGCTCTTGAAACCTA 59.175 52.381 0.00 0.00 0.00 3.08
3107 3657 3.071892 TCCTCCGCTCTTGAAACCTAAAA 59.928 43.478 0.00 0.00 0.00 1.52
3117 3667 2.227865 TGAAACCTAAAAGCATGGTCGC 59.772 45.455 0.00 0.00 32.98 5.19
3120 3670 1.062525 CTAAAAGCATGGTCGCCGC 59.937 57.895 0.00 0.00 0.00 6.53
3137 3687 1.355066 CGCCGCCTCTGTTTTCTCTC 61.355 60.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.144936 CCAGATCCGACAGGGCTTC 59.855 63.158 0.00 0.00 38.33 3.86
33 34 4.735132 TCTCCCAAACTCGCGCGG 62.735 66.667 31.69 22.52 0.00 6.46
36 37 1.071605 CTCTTTCTCCCAAACTCGCG 58.928 55.000 0.00 0.00 0.00 5.87
83 84 4.130118 AGCATATGAACGGTTGGATCTTC 58.870 43.478 6.97 0.00 0.00 2.87
140 141 2.553464 TCTTTCTTGTATCCCCCGGAA 58.447 47.619 0.73 0.00 34.34 4.30
161 162 0.685458 GGAGGCTGACGGTTAGGGTA 60.685 60.000 0.00 0.00 0.00 3.69
175 176 3.314083 GAGGATCGGATTTGGAGGC 57.686 57.895 0.00 0.00 0.00 4.70
253 254 4.898320 TCTTACATGCACAATGAGACACT 58.102 39.130 0.00 0.00 38.72 3.55
256 257 5.869753 ACTTCTTACATGCACAATGAGAC 57.130 39.130 0.00 0.00 38.72 3.36
290 291 1.533756 CCAATATGGACGGCGCAAAAG 60.534 52.381 10.83 0.00 40.96 2.27
331 332 1.091771 ATGAAATCGACTGGCGCCTG 61.092 55.000 29.48 29.48 40.61 4.85
366 367 1.668419 GCCTCGGTATTGCACATCTT 58.332 50.000 0.00 0.00 0.00 2.40
367 368 0.530650 CGCCTCGGTATTGCACATCT 60.531 55.000 0.00 0.00 0.00 2.90
380 381 1.934956 CGACATCGTCTTCGCCTCG 60.935 63.158 0.00 0.00 36.96 4.63
405 406 1.343478 CCTGGGGTCTACATCCTCACT 60.343 57.143 0.00 0.00 31.53 3.41
445 446 1.144716 GATGACGCCCATCTCTGCA 59.855 57.895 10.18 0.00 46.33 4.41
458 459 1.300233 CCTCGCCTTAGCCGATGAC 60.300 63.158 0.00 0.00 34.57 3.06
463 464 1.519455 CACTTCCTCGCCTTAGCCG 60.519 63.158 0.00 0.00 34.57 5.52
473 474 1.804601 CACGGTTTACCCACTTCCTC 58.195 55.000 0.00 0.00 0.00 3.71
519 520 3.515901 AGGAAGCTAAGTAACCTGAGTGG 59.484 47.826 0.00 0.00 42.93 4.00
541 542 3.691342 CGTCCCTGCCTTCGGTGA 61.691 66.667 0.00 0.00 0.00 4.02
564 565 2.202676 CTCCTCGTTGCCTCTCGC 60.203 66.667 0.00 0.00 38.31 5.03
620 621 1.078214 TCCTCCAATCGCTTGCCTG 60.078 57.895 0.00 0.00 0.00 4.85
662 664 2.860041 TCTTCCTCTAGCCCTAGTTCCT 59.140 50.000 2.53 0.00 34.84 3.36
665 667 2.241685 TCGTCTTCCTCTAGCCCTAGTT 59.758 50.000 2.53 0.00 34.84 2.24
684 686 1.002366 CCAACGGCTCTTCTTCATCG 58.998 55.000 0.00 0.00 0.00 3.84
748 750 2.135664 AAGAGTTTGACGGTCGTCTG 57.864 50.000 21.57 0.00 44.80 3.51
763 765 1.532437 TGTCGCTGCAACATCAAAGAG 59.468 47.619 0.00 0.00 0.00 2.85
980 1003 1.341089 GGGAAAACCTTGGGCTAGGAG 60.341 57.143 12.18 0.00 38.73 3.69
992 1015 2.565841 CTGGATCTCGATGGGAAAACC 58.434 52.381 0.00 0.00 40.81 3.27
1239 1262 1.731613 GACAACGTCGTCGGATGCA 60.732 57.895 7.05 0.00 41.85 3.96
1383 1409 2.501610 GGGAGGAAATCGAGCGCT 59.498 61.111 11.27 11.27 0.00 5.92
1631 1671 2.728922 GAAAGCAATAGAGCATGCAGC 58.271 47.619 21.98 11.59 44.95 5.25
1632 1672 2.286831 CCGAAAGCAATAGAGCATGCAG 60.287 50.000 21.98 3.27 44.95 4.41
1662 1702 2.751166 ACCTGAACTTCACAGATCCG 57.249 50.000 0.00 0.00 37.54 4.18
1663 1703 4.022849 CCAAAACCTGAACTTCACAGATCC 60.023 45.833 0.00 0.00 37.54 3.36
1664 1704 4.821805 TCCAAAACCTGAACTTCACAGATC 59.178 41.667 0.00 0.00 37.54 2.75
1665 1705 4.792068 TCCAAAACCTGAACTTCACAGAT 58.208 39.130 0.00 0.00 37.54 2.90
1666 1706 4.199310 CTCCAAAACCTGAACTTCACAGA 58.801 43.478 0.00 0.00 37.54 3.41
1667 1707 3.947834 ACTCCAAAACCTGAACTTCACAG 59.052 43.478 0.00 0.00 35.43 3.66
1668 1708 3.963129 ACTCCAAAACCTGAACTTCACA 58.037 40.909 0.00 0.00 0.00 3.58
1669 1709 5.365619 TCTACTCCAAAACCTGAACTTCAC 58.634 41.667 0.00 0.00 0.00 3.18
1670 1710 5.454755 CCTCTACTCCAAAACCTGAACTTCA 60.455 44.000 0.00 0.00 0.00 3.02
1671 1711 4.998033 CCTCTACTCCAAAACCTGAACTTC 59.002 45.833 0.00 0.00 0.00 3.01
1672 1712 4.412528 ACCTCTACTCCAAAACCTGAACTT 59.587 41.667 0.00 0.00 0.00 2.66
1673 1713 3.974642 ACCTCTACTCCAAAACCTGAACT 59.025 43.478 0.00 0.00 0.00 3.01
1674 1714 4.202326 TGACCTCTACTCCAAAACCTGAAC 60.202 45.833 0.00 0.00 0.00 3.18
1675 1715 3.971305 TGACCTCTACTCCAAAACCTGAA 59.029 43.478 0.00 0.00 0.00 3.02
1676 1716 3.578716 CTGACCTCTACTCCAAAACCTGA 59.421 47.826 0.00 0.00 0.00 3.86
1677 1717 3.578716 TCTGACCTCTACTCCAAAACCTG 59.421 47.826 0.00 0.00 0.00 4.00
1678 1718 3.835395 CTCTGACCTCTACTCCAAAACCT 59.165 47.826 0.00 0.00 0.00 3.50
1679 1719 3.055747 CCTCTGACCTCTACTCCAAAACC 60.056 52.174 0.00 0.00 0.00 3.27
1680 1720 3.617775 GCCTCTGACCTCTACTCCAAAAC 60.618 52.174 0.00 0.00 0.00 2.43
1681 1721 2.567615 GCCTCTGACCTCTACTCCAAAA 59.432 50.000 0.00 0.00 0.00 2.44
1682 1722 2.180276 GCCTCTGACCTCTACTCCAAA 58.820 52.381 0.00 0.00 0.00 3.28
1683 1723 1.359474 AGCCTCTGACCTCTACTCCAA 59.641 52.381 0.00 0.00 0.00 3.53
1684 1724 1.003646 AGCCTCTGACCTCTACTCCA 58.996 55.000 0.00 0.00 0.00 3.86
1685 1725 2.173996 ACTAGCCTCTGACCTCTACTCC 59.826 54.545 0.00 0.00 0.00 3.85
1686 1726 3.211045 CACTAGCCTCTGACCTCTACTC 58.789 54.545 0.00 0.00 0.00 2.59
1687 1727 2.685522 GCACTAGCCTCTGACCTCTACT 60.686 54.545 0.00 0.00 33.58 2.57
1688 1728 1.679153 GCACTAGCCTCTGACCTCTAC 59.321 57.143 0.00 0.00 33.58 2.59
1689 1729 2.060050 GCACTAGCCTCTGACCTCTA 57.940 55.000 0.00 0.00 33.58 2.43
1690 1730 2.894858 GCACTAGCCTCTGACCTCT 58.105 57.895 0.00 0.00 33.58 3.69
1701 1741 3.721706 ACAGGCCCTGGCACTAGC 61.722 66.667 16.70 0.00 44.11 3.42
1702 1742 2.270205 CACAGGCCCTGGCACTAG 59.730 66.667 16.70 0.00 44.11 2.57
1703 1743 4.033776 GCACAGGCCCTGGCACTA 62.034 66.667 16.70 0.00 44.11 2.74
1799 1839 0.413037 TCCCTGCAAAATGGATGGGT 59.587 50.000 3.55 0.00 36.23 4.51
1892 1942 2.040939 TCCACCACGAGAAAACAGGTA 58.959 47.619 0.00 0.00 0.00 3.08
1908 1958 1.423056 CGTACTCCTCGTCGTCCAC 59.577 63.158 0.00 0.00 0.00 4.02
2017 2074 2.049063 GCCTATCCGCAGCCTACG 60.049 66.667 0.00 0.00 0.00 3.51
2070 2155 8.943909 ATAGACAGACACATATGATATGCATG 57.056 34.615 10.16 6.89 37.87 4.06
2072 2157 8.689972 CCTATAGACAGACACATATGATATGCA 58.310 37.037 10.38 0.00 0.00 3.96
2073 2158 7.651304 GCCTATAGACAGACACATATGATATGC 59.349 40.741 10.38 0.00 0.00 3.14
2128 2213 6.956520 TGTATACGATTACAACAAACGCAATG 59.043 34.615 0.00 0.00 0.00 2.82
2334 2432 5.588648 CAGTGTTATGAATATGAAACCCCGT 59.411 40.000 0.00 0.00 0.00 5.28
2335 2433 5.820423 TCAGTGTTATGAATATGAAACCCCG 59.180 40.000 0.00 0.00 0.00 5.73
2387 2914 3.442076 ACTTCTTATCCACCCTCTCGTT 58.558 45.455 0.00 0.00 0.00 3.85
2396 2923 6.316390 CACCAACTATCCAACTTCTTATCCAC 59.684 42.308 0.00 0.00 0.00 4.02
2440 2967 4.461198 ACAATAGAATCGATTTCCCCACC 58.539 43.478 12.81 0.00 34.67 4.61
2490 3023 7.012704 CAGGAATTTCAAACCGAGACATCATAT 59.987 37.037 0.00 0.00 0.00 1.78
2538 3071 5.243207 CACCGTACCTTCCTCTAAAACAAT 58.757 41.667 0.00 0.00 0.00 2.71
2548 3081 1.677552 CTTGCCACCGTACCTTCCT 59.322 57.895 0.00 0.00 0.00 3.36
2549 3082 1.376812 CCTTGCCACCGTACCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
2614 3147 2.341846 ATATGGTAAGGGTGGCAACG 57.658 50.000 0.00 0.00 42.51 4.10
2625 3158 2.976882 GGACACCCTGCCTATATGGTAA 59.023 50.000 0.00 0.00 38.35 2.85
2626 3159 2.181419 AGGACACCCTGCCTATATGGTA 59.819 50.000 0.00 0.00 42.42 3.25
2627 3160 1.061346 AGGACACCCTGCCTATATGGT 60.061 52.381 0.00 0.00 42.42 3.55
2628 3161 1.734655 AGGACACCCTGCCTATATGG 58.265 55.000 0.00 0.00 42.42 2.74
2629 3162 2.834549 CCTAGGACACCCTGCCTATATG 59.165 54.545 1.05 0.00 44.15 1.78
2630 3163 2.225650 CCCTAGGACACCCTGCCTATAT 60.226 54.545 11.48 0.00 44.15 0.86
2649 3182 6.239629 CCTGACCTCTACATCTATAAAACCCC 60.240 46.154 0.00 0.00 0.00 4.95
2655 3188 8.410673 GTCATTCCTGACCTCTACATCTATAA 57.589 38.462 0.00 0.00 45.06 0.98
2684 3217 9.307121 CAGGTCTGACTTTAACATCAGTTATAG 57.693 37.037 7.85 0.00 42.52 1.31
2688 3221 6.174720 TCAGGTCTGACTTTAACATCAGTT 57.825 37.500 7.85 0.00 42.52 3.16
2689 3222 5.808366 TCAGGTCTGACTTTAACATCAGT 57.192 39.130 7.85 0.00 42.52 3.41
2690 3223 5.814705 GGATCAGGTCTGACTTTAACATCAG 59.185 44.000 7.85 8.33 43.11 2.90
2693 3226 5.762179 TGGATCAGGTCTGACTTTAACAT 57.238 39.130 7.85 0.00 43.11 2.71
2724 3257 8.999431 CACGGTTTATAGGTAGAAATATGCATT 58.001 33.333 3.54 0.00 0.00 3.56
2725 3258 8.372459 TCACGGTTTATAGGTAGAAATATGCAT 58.628 33.333 3.79 3.79 0.00 3.96
2727 3260 8.656849 CATCACGGTTTATAGGTAGAAATATGC 58.343 37.037 0.00 0.00 0.00 3.14
2728 3261 9.151471 CCATCACGGTTTATAGGTAGAAATATG 57.849 37.037 0.00 0.00 0.00 1.78
2748 3281 1.696097 ATGGCCGGGTAGACCATCAC 61.696 60.000 2.18 0.00 40.14 3.06
2755 3288 4.288234 CCTGTATGGCCGGGTAGA 57.712 61.111 2.18 0.00 0.00 2.59
2777 3310 4.276739 GATTGCTCGCGCGCTCAG 62.277 66.667 30.48 24.30 39.65 3.35
2790 3323 1.134580 AGATCGAGTGGCCACAGATTG 60.135 52.381 36.39 20.22 33.41 2.67
2791 3324 1.198713 AGATCGAGTGGCCACAGATT 58.801 50.000 36.39 23.58 33.41 2.40
2796 3329 2.418976 GGTAAAAAGATCGAGTGGCCAC 59.581 50.000 29.22 29.22 0.00 5.01
2801 3334 3.323243 ACCACGGTAAAAAGATCGAGTG 58.677 45.455 0.00 0.00 0.00 3.51
2802 3335 3.672767 ACCACGGTAAAAAGATCGAGT 57.327 42.857 0.00 0.00 0.00 4.18
2804 3337 3.731089 ACAACCACGGTAAAAAGATCGA 58.269 40.909 0.00 0.00 0.00 3.59
2817 3351 2.970609 CACAGCGATAAAAACAACCACG 59.029 45.455 0.00 0.00 0.00 4.94
2818 3352 3.959943 ACACAGCGATAAAAACAACCAC 58.040 40.909 0.00 0.00 0.00 4.16
2819 3353 3.628032 TGACACAGCGATAAAAACAACCA 59.372 39.130 0.00 0.00 0.00 3.67
2834 3368 3.117171 GCCGAGCAGCTGACACAG 61.117 66.667 20.43 2.12 34.12 3.66
2835 3369 4.687215 GGCCGAGCAGCTGACACA 62.687 66.667 20.43 0.00 0.00 3.72
2839 3373 4.742201 GAACGGCCGAGCAGCTGA 62.742 66.667 35.90 0.00 42.00 4.26
2851 3385 1.467374 GCGTGGAAAATGGATGAACGG 60.467 52.381 0.00 0.00 0.00 4.44
2860 3394 3.165318 GCGCGTGCGTGGAAAATG 61.165 61.111 16.27 0.00 42.09 2.32
2878 3412 0.110678 ATCATCCAGCATCAGCCCAG 59.889 55.000 0.00 0.00 43.56 4.45
2881 3415 0.959553 CCAATCATCCAGCATCAGCC 59.040 55.000 0.00 0.00 43.56 4.85
2887 3421 1.307309 CCCCACCAATCATCCAGCA 59.693 57.895 0.00 0.00 0.00 4.41
2897 3431 0.698238 CAGGAGAATGACCCCACCAA 59.302 55.000 0.00 0.00 0.00 3.67
2899 3433 0.035056 CACAGGAGAATGACCCCACC 60.035 60.000 0.00 0.00 0.00 4.61
2904 3438 1.609783 CCCCCACAGGAGAATGACC 59.390 63.158 0.00 0.00 38.24 4.02
2908 3442 0.846427 TCTTGCCCCCACAGGAGAAT 60.846 55.000 0.00 0.00 38.24 2.40
2920 3454 0.179034 CCAGCCACTATCTCTTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
2922 3456 2.409948 AACCAGCCACTATCTCTTGC 57.590 50.000 0.00 0.00 0.00 4.01
2923 3457 3.686726 GTCAAACCAGCCACTATCTCTTG 59.313 47.826 0.00 0.00 0.00 3.02
2927 3461 1.623811 ACGTCAAACCAGCCACTATCT 59.376 47.619 0.00 0.00 0.00 1.98
2930 3464 1.336148 CGTACGTCAAACCAGCCACTA 60.336 52.381 7.22 0.00 0.00 2.74
2951 3496 2.583441 CCCCGCACCTCTCAGTTCA 61.583 63.158 0.00 0.00 0.00 3.18
2958 3503 1.828660 CGATCTACCCCGCACCTCT 60.829 63.158 0.00 0.00 0.00 3.69
2965 3510 4.104143 GCAACACGATCTACCCCG 57.896 61.111 0.00 0.00 0.00 5.73
2977 3522 0.871722 GCTATTCACCACACGCAACA 59.128 50.000 0.00 0.00 0.00 3.33
3026 3576 4.247380 GAGCATGCGAGGAGGGGG 62.247 72.222 13.01 0.00 0.00 5.40
3027 3577 3.160047 AGAGCATGCGAGGAGGGG 61.160 66.667 13.01 0.00 0.00 4.79
3028 3578 2.420890 GAGAGCATGCGAGGAGGG 59.579 66.667 13.01 0.00 0.00 4.30
3029 3579 2.420890 GGAGAGCATGCGAGGAGG 59.579 66.667 13.01 0.00 0.00 4.30
3030 3580 1.227205 GTGGAGAGCATGCGAGGAG 60.227 63.158 13.01 0.00 0.00 3.69
3031 3581 2.725312 GGTGGAGAGCATGCGAGGA 61.725 63.158 13.01 0.00 0.00 3.71
3032 3582 2.202987 GGTGGAGAGCATGCGAGG 60.203 66.667 13.01 0.00 0.00 4.63
3033 3583 1.812922 GTGGTGGAGAGCATGCGAG 60.813 63.158 13.01 0.00 30.75 5.03
3034 3584 2.265739 GTGGTGGAGAGCATGCGA 59.734 61.111 13.01 0.00 30.75 5.10
3040 3590 2.032681 GTGGTGGTGGTGGAGAGC 59.967 66.667 0.00 0.00 0.00 4.09
3054 3604 3.775654 GAGGAGGAGGCGTGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
3055 3605 3.775654 GGAGGAGGAGGCGTGGTG 61.776 72.222 0.00 0.00 0.00 4.17
3056 3606 3.966930 GAGGAGGAGGAGGCGTGGT 62.967 68.421 0.00 0.00 0.00 4.16
3058 3608 3.522731 CGAGGAGGAGGAGGCGTG 61.523 72.222 0.00 0.00 0.00 5.34
3061 3611 2.762043 AAGCGAGGAGGAGGAGGC 60.762 66.667 0.00 0.00 0.00 4.70
3062 3612 1.076339 AGAAGCGAGGAGGAGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
3091 3641 4.021981 ACCATGCTTTTAGGTTTCAAGAGC 60.022 41.667 0.00 0.00 34.58 4.09
3096 3646 2.227865 GCGACCATGCTTTTAGGTTTCA 59.772 45.455 0.00 0.00 35.36 2.69
3104 3654 3.747976 GGCGGCGACCATGCTTTT 61.748 61.111 12.98 0.00 34.52 2.27
3117 3667 2.358737 AGAAAACAGAGGCGGCGG 60.359 61.111 9.78 0.00 0.00 6.13
3120 3670 1.548269 AGAGAGAGAAAACAGAGGCGG 59.452 52.381 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.