Multiple sequence alignment - TraesCS5D01G340300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G340300 chr5D 100.000 5478 0 0 1 5478 428718236 428712759 0.000000e+00 10117.0
1 TraesCS5D01G340300 chr5D 88.636 176 17 2 48 223 12037642 12037470 1.550000e-50 211.0
2 TraesCS5D01G340300 chr5B 91.153 1865 86 36 680 2497 517869480 517867648 0.000000e+00 2457.0
3 TraesCS5D01G340300 chr5B 93.305 1673 59 21 3177 4814 517867055 517865401 0.000000e+00 2420.0
4 TraesCS5D01G340300 chr5B 96.785 591 15 4 4810 5397 517865338 517864749 0.000000e+00 983.0
5 TraesCS5D01G340300 chr5B 92.834 614 22 9 2551 3152 517867651 517867048 0.000000e+00 870.0
6 TraesCS5D01G340300 chr5B 84.158 303 19 18 257 532 517869958 517869658 3.250000e-67 267.0
7 TraesCS5D01G340300 chr5B 88.000 175 18 3 49 223 604911456 604911627 2.590000e-48 204.0
8 TraesCS5D01G340300 chr5B 96.721 61 2 0 2498 2558 317294296 317294236 9.710000e-18 102.0
9 TraesCS5D01G340300 chr5B 98.246 57 1 0 2498 2554 40880243 40880299 3.490000e-17 100.0
10 TraesCS5D01G340300 chr5A 92.568 1682 65 23 3177 4814 544566729 544565064 0.000000e+00 2359.0
11 TraesCS5D01G340300 chr5A 86.968 1458 72 55 438 1817 544569455 544568038 0.000000e+00 1531.0
12 TraesCS5D01G340300 chr5A 97.167 600 15 2 2554 3152 544567320 544566722 0.000000e+00 1013.0
13 TraesCS5D01G340300 chr5A 94.314 510 27 2 4912 5420 544563523 544563015 0.000000e+00 780.0
14 TraesCS5D01G340300 chr5A 83.447 731 72 21 1789 2497 544568028 544567325 7.740000e-178 634.0
15 TraesCS5D01G340300 chr5A 89.412 170 15 1 54 223 519947334 519947500 1.550000e-50 211.0
16 TraesCS5D01G340300 chr5A 92.086 139 8 3 4810 4947 544565000 544564864 5.600000e-45 193.0
17 TraesCS5D01G340300 chr6D 90.476 168 13 1 56 223 119803703 119803539 9.240000e-53 219.0
18 TraesCS5D01G340300 chr3D 89.595 173 15 1 51 223 526050794 526050625 3.320000e-52 217.0
19 TraesCS5D01G340300 chr3D 89.881 168 14 1 56 223 374922044 374922208 4.300000e-51 213.0
20 TraesCS5D01G340300 chr3D 88.889 171 16 1 53 223 412074485 412074652 2.000000e-49 207.0
21 TraesCS5D01G340300 chr3D 96.610 59 2 0 2497 2555 24062669 24062611 1.260000e-16 99.0
22 TraesCS5D01G340300 chr6A 88.690 168 16 1 56 223 481340588 481340424 9.300000e-48 202.0
23 TraesCS5D01G340300 chr1B 88.235 170 16 2 56 224 522838627 522838793 3.350000e-47 200.0
24 TraesCS5D01G340300 chr1B 96.610 59 2 0 2499 2557 349741683 349741741 1.260000e-16 99.0
25 TraesCS5D01G340300 chr1B 92.537 67 3 2 2498 2563 312230142 312230077 1.620000e-15 95.3
26 TraesCS5D01G340300 chr7B 92.632 95 7 0 1520 1614 716024677 716024583 2.660000e-28 137.0
27 TraesCS5D01G340300 chr4A 98.305 59 1 0 2498 2556 743141180 743141122 2.700000e-18 104.0
28 TraesCS5D01G340300 chr2B 84.259 108 15 1 1507 1614 44408981 44408876 2.700000e-18 104.0
29 TraesCS5D01G340300 chrUn 95.161 62 3 0 2497 2558 94824203 94824142 1.260000e-16 99.0
30 TraesCS5D01G340300 chr7D 96.610 59 2 0 2498 2556 626199913 626199971 1.260000e-16 99.0
31 TraesCS5D01G340300 chr2D 83.333 108 16 1 1507 1614 27912145 27912040 1.260000e-16 99.0
32 TraesCS5D01G340300 chr2A 83.333 108 16 1 1507 1614 30136558 30136453 1.260000e-16 99.0
33 TraesCS5D01G340300 chr6B 91.176 68 6 0 2498 2565 147684283 147684216 5.840000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G340300 chr5D 428712759 428718236 5477 True 10117.0 10117 100.000000 1 5478 1 chr5D.!!$R2 5477
1 TraesCS5D01G340300 chr5B 517864749 517869958 5209 True 1399.4 2457 91.647000 257 5397 5 chr5B.!!$R2 5140
2 TraesCS5D01G340300 chr5A 544563015 544569455 6440 True 1085.0 2359 91.091667 438 5420 6 chr5A.!!$R1 4982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.183492 ACCAGGACGGCGGTAGTATA 59.817 55.0 13.24 0.0 39.03 1.47 F
1300 1394 0.254747 CTTCGGATTGTAAGCCCCCA 59.745 55.0 0.00 0.0 0.00 4.96 F
1892 2065 0.879090 CGGGGAAGAAAAGGGAAACG 59.121 55.0 0.00 0.0 0.00 3.60 F
2334 2535 0.895100 TCCAGACCCAATGCAACAGC 60.895 55.0 0.00 0.0 0.00 4.40 F
4027 4266 0.248743 TCACCGTCGATAATCCACGC 60.249 55.0 0.00 0.0 32.03 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1740 0.312416 CGTATTCTGGCGAGGAGAGG 59.688 60.0 0.00 0.0 0.00 3.69 R
2537 2738 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.00 0.0 0.00 4.00 R
3371 3592 1.130054 AAGAGCTCCCTTGGCACTGA 61.130 55.0 10.93 0.0 31.59 3.41 R
4166 4405 0.250166 AACCGAACCTGAAGAACCGG 60.250 55.0 0.00 0.0 42.30 5.28 R
5448 7158 0.322322 TCATCTAAACGCGGGTGGTT 59.678 50.0 12.47 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.389906 GGGTTTGTCTTGTGATTATTCTTGG 58.610 40.000 0.00 0.00 0.00 3.61
25 26 6.389906 GGTTTGTCTTGTGATTATTCTTGGG 58.610 40.000 0.00 0.00 0.00 4.12
26 27 6.015434 GGTTTGTCTTGTGATTATTCTTGGGT 60.015 38.462 0.00 0.00 0.00 4.51
27 28 7.433680 GTTTGTCTTGTGATTATTCTTGGGTT 58.566 34.615 0.00 0.00 0.00 4.11
28 29 6.817765 TGTCTTGTGATTATTCTTGGGTTC 57.182 37.500 0.00 0.00 0.00 3.62
29 30 6.542821 TGTCTTGTGATTATTCTTGGGTTCT 58.457 36.000 0.00 0.00 0.00 3.01
30 31 7.004086 TGTCTTGTGATTATTCTTGGGTTCTT 58.996 34.615 0.00 0.00 0.00 2.52
31 32 7.040478 TGTCTTGTGATTATTCTTGGGTTCTTG 60.040 37.037 0.00 0.00 0.00 3.02
32 33 5.643379 TGTGATTATTCTTGGGTTCTTGC 57.357 39.130 0.00 0.00 0.00 4.01
33 34 4.462483 TGTGATTATTCTTGGGTTCTTGCC 59.538 41.667 0.00 0.00 0.00 4.52
34 35 3.694072 TGATTATTCTTGGGTTCTTGCCG 59.306 43.478 0.00 0.00 0.00 5.69
35 36 1.459450 TATTCTTGGGTTCTTGCCGC 58.541 50.000 0.00 0.00 0.00 6.53
36 37 1.586154 ATTCTTGGGTTCTTGCCGCG 61.586 55.000 0.00 0.00 0.00 6.46
37 38 2.951475 TTCTTGGGTTCTTGCCGCGT 62.951 55.000 4.92 0.00 0.00 6.01
38 39 1.669760 CTTGGGTTCTTGCCGCGTA 60.670 57.895 4.92 0.00 0.00 4.42
39 40 1.908066 CTTGGGTTCTTGCCGCGTAC 61.908 60.000 4.92 0.00 0.00 3.67
40 41 2.357760 GGGTTCTTGCCGCGTACA 60.358 61.111 4.92 0.00 0.00 2.90
41 42 1.743995 GGGTTCTTGCCGCGTACAT 60.744 57.895 4.92 0.00 0.00 2.29
42 43 0.460635 GGGTTCTTGCCGCGTACATA 60.461 55.000 4.92 0.00 0.00 2.29
43 44 0.648958 GGTTCTTGCCGCGTACATAC 59.351 55.000 4.92 2.28 0.00 2.39
44 45 0.648958 GTTCTTGCCGCGTACATACC 59.351 55.000 4.92 0.00 0.00 2.73
45 46 0.460635 TTCTTGCCGCGTACATACCC 60.461 55.000 4.92 0.00 0.00 3.69
46 47 1.885850 CTTGCCGCGTACATACCCC 60.886 63.158 4.92 0.00 0.00 4.95
47 48 3.388703 TTGCCGCGTACATACCCCC 62.389 63.158 4.92 0.00 0.00 5.40
48 49 3.543641 GCCGCGTACATACCCCCT 61.544 66.667 4.92 0.00 0.00 4.79
49 50 2.202395 GCCGCGTACATACCCCCTA 61.202 63.158 4.92 0.00 0.00 3.53
50 51 1.962144 CCGCGTACATACCCCCTAG 59.038 63.158 4.92 0.00 0.00 3.02
51 52 1.288127 CGCGTACATACCCCCTAGC 59.712 63.158 0.00 0.00 0.00 3.42
52 53 1.177256 CGCGTACATACCCCCTAGCT 61.177 60.000 0.00 0.00 0.00 3.32
53 54 1.046204 GCGTACATACCCCCTAGCTT 58.954 55.000 0.00 0.00 0.00 3.74
54 55 1.000618 GCGTACATACCCCCTAGCTTC 59.999 57.143 0.00 0.00 0.00 3.86
55 56 2.595238 CGTACATACCCCCTAGCTTCT 58.405 52.381 0.00 0.00 0.00 2.85
56 57 3.759581 CGTACATACCCCCTAGCTTCTA 58.240 50.000 0.00 0.00 0.00 2.10
57 58 3.505293 CGTACATACCCCCTAGCTTCTAC 59.495 52.174 0.00 0.00 0.00 2.59
58 59 3.995691 ACATACCCCCTAGCTTCTACT 57.004 47.619 0.00 0.00 0.00 2.57
59 60 3.847081 ACATACCCCCTAGCTTCTACTC 58.153 50.000 0.00 0.00 0.00 2.59
60 61 3.166679 CATACCCCCTAGCTTCTACTCC 58.833 54.545 0.00 0.00 0.00 3.85
61 62 0.265254 ACCCCCTAGCTTCTACTCCC 59.735 60.000 0.00 0.00 0.00 4.30
62 63 0.563672 CCCCCTAGCTTCTACTCCCT 59.436 60.000 0.00 0.00 0.00 4.20
63 64 1.481615 CCCCCTAGCTTCTACTCCCTC 60.482 61.905 0.00 0.00 0.00 4.30
64 65 1.481615 CCCCTAGCTTCTACTCCCTCC 60.482 61.905 0.00 0.00 0.00 4.30
65 66 1.611519 CCTAGCTTCTACTCCCTCCG 58.388 60.000 0.00 0.00 0.00 4.63
66 67 1.133730 CCTAGCTTCTACTCCCTCCGT 60.134 57.143 0.00 0.00 0.00 4.69
67 68 2.657143 CTAGCTTCTACTCCCTCCGTT 58.343 52.381 0.00 0.00 0.00 4.44
68 69 1.939980 AGCTTCTACTCCCTCCGTTT 58.060 50.000 0.00 0.00 0.00 3.60
69 70 1.826096 AGCTTCTACTCCCTCCGTTTC 59.174 52.381 0.00 0.00 0.00 2.78
70 71 1.826096 GCTTCTACTCCCTCCGTTTCT 59.174 52.381 0.00 0.00 0.00 2.52
71 72 3.022406 GCTTCTACTCCCTCCGTTTCTA 58.978 50.000 0.00 0.00 0.00 2.10
72 73 3.446516 GCTTCTACTCCCTCCGTTTCTAA 59.553 47.826 0.00 0.00 0.00 2.10
73 74 4.081807 GCTTCTACTCCCTCCGTTTCTAAA 60.082 45.833 0.00 0.00 0.00 1.85
74 75 5.395435 GCTTCTACTCCCTCCGTTTCTAAAT 60.395 44.000 0.00 0.00 0.00 1.40
75 76 6.183360 GCTTCTACTCCCTCCGTTTCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
76 77 7.471679 GCTTCTACTCCCTCCGTTTCTAAATAT 60.472 40.741 0.00 0.00 0.00 1.28
77 78 9.075678 CTTCTACTCCCTCCGTTTCTAAATATA 57.924 37.037 0.00 0.00 0.00 0.86
78 79 9.425248 TTCTACTCCCTCCGTTTCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
79 80 9.075678 TCTACTCCCTCCGTTTCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
80 81 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
81 82 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
82 83 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
83 84 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
84 85 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
85 86 9.043079 CCCTCCGTTTCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
86 87 9.819267 CCTCCGTTTCTAAATATAAGTCTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
103 104 8.545229 AGTCTTTCTAGTGATTTCATCAAGTG 57.455 34.615 0.00 0.00 41.69 3.16
104 105 8.370940 AGTCTTTCTAGTGATTTCATCAAGTGA 58.629 33.333 0.00 0.00 41.69 3.41
105 106 8.439286 GTCTTTCTAGTGATTTCATCAAGTGAC 58.561 37.037 0.00 0.00 41.69 3.67
106 107 8.370940 TCTTTCTAGTGATTTCATCAAGTGACT 58.629 33.333 0.00 0.00 41.69 3.41
107 108 9.645059 CTTTCTAGTGATTTCATCAAGTGACTA 57.355 33.333 0.00 0.00 41.69 2.59
108 109 8.988064 TTCTAGTGATTTCATCAAGTGACTAC 57.012 34.615 0.00 0.00 41.69 2.73
109 110 8.122472 TCTAGTGATTTCATCAAGTGACTACA 57.878 34.615 0.00 0.00 41.69 2.74
110 111 8.753133 TCTAGTGATTTCATCAAGTGACTACAT 58.247 33.333 0.00 0.00 41.69 2.29
112 113 8.709386 AGTGATTTCATCAAGTGACTACATAC 57.291 34.615 0.00 0.00 41.69 2.39
113 114 7.489435 AGTGATTTCATCAAGTGACTACATACG 59.511 37.037 0.00 0.00 41.69 3.06
114 115 7.488150 GTGATTTCATCAAGTGACTACATACGA 59.512 37.037 0.00 0.00 41.69 3.43
115 116 8.032451 TGATTTCATCAAGTGACTACATACGAA 58.968 33.333 0.00 0.00 36.32 3.85
116 117 7.812309 TTTCATCAAGTGACTACATACGAAG 57.188 36.000 0.00 0.00 36.32 3.79
117 118 5.340803 TCATCAAGTGACTACATACGAAGC 58.659 41.667 0.00 0.00 0.00 3.86
118 119 4.776795 TCAAGTGACTACATACGAAGCA 57.223 40.909 0.00 0.00 0.00 3.91
119 120 5.128992 TCAAGTGACTACATACGAAGCAA 57.871 39.130 0.00 0.00 0.00 3.91
120 121 5.534407 TCAAGTGACTACATACGAAGCAAA 58.466 37.500 0.00 0.00 0.00 3.68
121 122 5.986741 TCAAGTGACTACATACGAAGCAAAA 59.013 36.000 0.00 0.00 0.00 2.44
122 123 6.145534 TCAAGTGACTACATACGAAGCAAAAG 59.854 38.462 0.00 0.00 0.00 2.27
123 124 4.929808 AGTGACTACATACGAAGCAAAAGG 59.070 41.667 0.00 0.00 0.00 3.11
124 125 4.927425 GTGACTACATACGAAGCAAAAGGA 59.073 41.667 0.00 0.00 0.00 3.36
125 126 5.062308 GTGACTACATACGAAGCAAAAGGAG 59.938 44.000 0.00 0.00 0.00 3.69
126 127 5.148651 ACTACATACGAAGCAAAAGGAGT 57.851 39.130 0.00 0.00 0.00 3.85
127 128 4.929808 ACTACATACGAAGCAAAAGGAGTG 59.070 41.667 0.00 0.00 0.00 3.51
128 129 4.002906 ACATACGAAGCAAAAGGAGTGA 57.997 40.909 0.00 0.00 0.00 3.41
129 130 4.385825 ACATACGAAGCAAAAGGAGTGAA 58.614 39.130 0.00 0.00 0.00 3.18
130 131 5.003804 ACATACGAAGCAAAAGGAGTGAAT 58.996 37.500 0.00 0.00 0.00 2.57
131 132 6.170506 ACATACGAAGCAAAAGGAGTGAATA 58.829 36.000 0.00 0.00 0.00 1.75
132 133 6.823689 ACATACGAAGCAAAAGGAGTGAATAT 59.176 34.615 0.00 0.00 0.00 1.28
133 134 7.985184 ACATACGAAGCAAAAGGAGTGAATATA 59.015 33.333 0.00 0.00 0.00 0.86
134 135 6.663944 ACGAAGCAAAAGGAGTGAATATAC 57.336 37.500 0.00 0.00 0.00 1.47
135 136 6.170506 ACGAAGCAAAAGGAGTGAATATACA 58.829 36.000 0.00 0.00 0.00 2.29
136 137 6.092259 ACGAAGCAAAAGGAGTGAATATACAC 59.908 38.462 0.00 0.00 40.60 2.90
218 219 6.812879 AAACTTACATTTAAGAACGGAGGG 57.187 37.500 5.64 0.00 37.49 4.30
219 220 5.750352 ACTTACATTTAAGAACGGAGGGA 57.250 39.130 5.64 0.00 37.49 4.20
220 221 5.731591 ACTTACATTTAAGAACGGAGGGAG 58.268 41.667 5.64 0.00 37.49 4.30
221 222 5.247792 ACTTACATTTAAGAACGGAGGGAGT 59.752 40.000 5.64 0.00 37.49 3.85
222 223 6.438425 ACTTACATTTAAGAACGGAGGGAGTA 59.562 38.462 5.64 0.00 37.49 2.59
223 224 5.340439 ACATTTAAGAACGGAGGGAGTAG 57.660 43.478 0.00 0.00 0.00 2.57
224 225 5.021458 ACATTTAAGAACGGAGGGAGTAGA 58.979 41.667 0.00 0.00 0.00 2.59
225 226 5.482878 ACATTTAAGAACGGAGGGAGTAGAA 59.517 40.000 0.00 0.00 0.00 2.10
226 227 6.156429 ACATTTAAGAACGGAGGGAGTAGAAT 59.844 38.462 0.00 0.00 0.00 2.40
227 228 7.343833 ACATTTAAGAACGGAGGGAGTAGAATA 59.656 37.037 0.00 0.00 0.00 1.75
228 229 6.956202 TTAAGAACGGAGGGAGTAGAATAG 57.044 41.667 0.00 0.00 0.00 1.73
229 230 4.792513 AGAACGGAGGGAGTAGAATAGA 57.207 45.455 0.00 0.00 0.00 1.98
230 231 5.327737 AGAACGGAGGGAGTAGAATAGAT 57.672 43.478 0.00 0.00 0.00 1.98
231 232 6.451292 AGAACGGAGGGAGTAGAATAGATA 57.549 41.667 0.00 0.00 0.00 1.98
232 233 6.478129 AGAACGGAGGGAGTAGAATAGATAG 58.522 44.000 0.00 0.00 0.00 2.08
233 234 5.846528 ACGGAGGGAGTAGAATAGATAGT 57.153 43.478 0.00 0.00 0.00 2.12
234 235 6.949117 ACGGAGGGAGTAGAATAGATAGTA 57.051 41.667 0.00 0.00 0.00 1.82
235 236 6.710278 ACGGAGGGAGTAGAATAGATAGTAC 58.290 44.000 0.00 0.00 0.00 2.73
236 237 6.271857 ACGGAGGGAGTAGAATAGATAGTACA 59.728 42.308 0.00 0.00 0.00 2.90
237 238 6.819649 CGGAGGGAGTAGAATAGATAGTACAG 59.180 46.154 0.00 0.00 0.00 2.74
238 239 7.310547 CGGAGGGAGTAGAATAGATAGTACAGA 60.311 44.444 0.00 0.00 0.00 3.41
239 240 7.825761 GGAGGGAGTAGAATAGATAGTACAGAC 59.174 44.444 0.00 0.00 0.00 3.51
240 241 7.692172 AGGGAGTAGAATAGATAGTACAGACC 58.308 42.308 0.00 0.00 0.00 3.85
241 242 7.295196 AGGGAGTAGAATAGATAGTACAGACCA 59.705 40.741 0.00 0.00 0.00 4.02
242 243 7.608761 GGGAGTAGAATAGATAGTACAGACCAG 59.391 44.444 0.00 0.00 0.00 4.00
243 244 7.608761 GGAGTAGAATAGATAGTACAGACCAGG 59.391 44.444 0.00 0.00 0.00 4.45
244 245 8.277720 AGTAGAATAGATAGTACAGACCAGGA 57.722 38.462 0.00 0.00 0.00 3.86
245 246 8.158789 AGTAGAATAGATAGTACAGACCAGGAC 58.841 40.741 0.00 0.00 0.00 3.85
246 247 5.998981 AGAATAGATAGTACAGACCAGGACG 59.001 44.000 0.00 0.00 0.00 4.79
247 248 2.933573 AGATAGTACAGACCAGGACGG 58.066 52.381 0.00 0.00 42.50 4.79
248 249 1.337387 GATAGTACAGACCAGGACGGC 59.663 57.143 0.00 0.00 39.03 5.68
249 250 1.028330 TAGTACAGACCAGGACGGCG 61.028 60.000 4.80 4.80 39.03 6.46
250 251 3.066190 TACAGACCAGGACGGCGG 61.066 66.667 13.24 0.00 39.03 6.13
251 252 3.873679 TACAGACCAGGACGGCGGT 62.874 63.158 13.24 0.00 39.03 5.68
252 253 2.482796 TACAGACCAGGACGGCGGTA 62.483 60.000 13.24 0.00 39.03 4.02
253 254 2.754658 AGACCAGGACGGCGGTAG 60.755 66.667 13.24 0.00 39.03 3.18
254 255 3.066814 GACCAGGACGGCGGTAGT 61.067 66.667 13.24 0.27 39.03 2.73
255 256 1.750399 GACCAGGACGGCGGTAGTA 60.750 63.158 13.24 0.00 39.03 1.82
256 257 1.076485 ACCAGGACGGCGGTAGTAT 60.076 57.895 13.24 0.00 39.03 2.12
257 258 0.183492 ACCAGGACGGCGGTAGTATA 59.817 55.000 13.24 0.00 39.03 1.47
258 259 0.879765 CCAGGACGGCGGTAGTATAG 59.120 60.000 13.24 0.00 0.00 1.31
259 260 1.544093 CCAGGACGGCGGTAGTATAGA 60.544 57.143 13.24 0.00 0.00 1.98
260 261 2.434428 CAGGACGGCGGTAGTATAGAT 58.566 52.381 13.24 0.00 0.00 1.98
303 304 2.122547 AGGGTCCAAGTCCACGGT 60.123 61.111 0.00 0.00 0.00 4.83
346 348 4.047059 CCGCCGTGGTGTACTCGT 62.047 66.667 0.00 0.00 34.46 4.18
352 354 1.270550 CCGTGGTGTACTCGTACCTTT 59.729 52.381 4.89 0.00 37.84 3.11
353 355 2.322161 CGTGGTGTACTCGTACCTTTG 58.678 52.381 4.89 0.00 37.84 2.77
360 368 1.264295 ACTCGTACCTTTGACCCCTC 58.736 55.000 0.00 0.00 0.00 4.30
366 374 1.302511 CCTTTGACCCCTCACCGTG 60.303 63.158 0.00 0.00 0.00 4.94
367 375 1.450211 CTTTGACCCCTCACCGTGT 59.550 57.895 0.00 0.00 0.00 4.49
383 391 0.307760 GTGTTTCTGCCGTGTGGAAG 59.692 55.000 0.00 0.00 43.21 3.46
396 404 0.669625 GTGGAAGACCTACACCACGC 60.670 60.000 0.00 0.00 42.20 5.34
398 406 1.180029 GGAAGACCTACACCACGCTA 58.820 55.000 0.00 0.00 0.00 4.26
400 408 1.134560 GAAGACCTACACCACGCTAGG 59.865 57.143 0.00 0.00 36.35 3.02
401 409 0.683504 AGACCTACACCACGCTAGGG 60.684 60.000 5.05 5.05 34.77 3.53
402 410 0.682209 GACCTACACCACGCTAGGGA 60.682 60.000 14.59 0.00 34.77 4.20
403 411 0.683504 ACCTACACCACGCTAGGGAG 60.684 60.000 14.59 5.44 34.77 4.30
404 412 1.392710 CCTACACCACGCTAGGGAGG 61.393 65.000 19.57 19.57 0.00 4.30
406 414 2.509931 TACACCACGCTAGGGAGGCT 62.510 60.000 20.80 10.36 0.00 4.58
413 431 1.452145 CGCTAGGGAGGCTCAGACTC 61.452 65.000 17.69 0.00 36.87 3.36
422 440 1.022451 GGCTCAGACTCGACTCGACT 61.022 60.000 0.00 0.00 0.00 4.18
423 441 0.372334 GCTCAGACTCGACTCGACTC 59.628 60.000 0.00 0.00 0.00 3.36
424 442 1.715993 CTCAGACTCGACTCGACTCA 58.284 55.000 9.79 0.00 0.00 3.41
426 444 2.003301 TCAGACTCGACTCGACTCATG 58.997 52.381 9.79 0.00 0.00 3.07
429 447 0.805614 ACTCGACTCGACTCATGTGG 59.194 55.000 0.00 0.00 0.00 4.17
536 562 1.304052 CAGGACCCAAATCCGGCAA 60.304 57.895 0.00 0.00 44.22 4.52
538 564 2.348104 GGACCCAAATCCGGCAACC 61.348 63.158 0.00 0.00 0.00 3.77
539 565 2.283604 ACCCAAATCCGGCAACCC 60.284 61.111 0.00 0.00 0.00 4.11
603 645 1.227943 CAGCCCATACATCACCCCG 60.228 63.158 0.00 0.00 0.00 5.73
637 679 1.673009 GAATCCGCCGACCCAAACA 60.673 57.895 0.00 0.00 0.00 2.83
638 680 1.228306 AATCCGCCGACCCAAACAA 60.228 52.632 0.00 0.00 0.00 2.83
640 682 1.520600 ATCCGCCGACCCAAACAAAC 61.521 55.000 0.00 0.00 0.00 2.93
655 697 1.410882 ACAAACAACCAAACCCCATCG 59.589 47.619 0.00 0.00 0.00 3.84
675 738 2.672714 GCTCCCAACGGAAAATCAAAC 58.327 47.619 0.00 0.00 37.86 2.93
699 782 2.047179 GGTCCAGTCCAACGGAGC 60.047 66.667 0.00 0.00 42.14 4.70
728 811 2.997897 GCTCACTGACGACCCCCT 60.998 66.667 0.00 0.00 0.00 4.79
729 812 3.007973 GCTCACTGACGACCCCCTC 62.008 68.421 0.00 0.00 0.00 4.30
730 813 2.283676 TCACTGACGACCCCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
731 814 3.391382 CACTGACGACCCCCTCCC 61.391 72.222 0.00 0.00 0.00 4.30
732 815 4.716977 ACTGACGACCCCCTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
758 841 4.903355 CGCTCTCTCTCGCTGCGG 62.903 72.222 23.03 12.92 42.46 5.69
819 902 1.202580 CCTCACCTCACCGATCATTCC 60.203 57.143 0.00 0.00 0.00 3.01
892 975 1.094785 GAGCACCACCAACGCATATT 58.905 50.000 0.00 0.00 0.00 1.28
996 1087 2.047179 CTGCTCTGCTCTGCTGCA 60.047 61.111 0.88 0.88 41.05 4.41
1298 1392 1.101635 GCCTTCGGATTGTAAGCCCC 61.102 60.000 0.00 0.00 0.00 5.80
1300 1394 0.254747 CTTCGGATTGTAAGCCCCCA 59.745 55.000 0.00 0.00 0.00 4.96
1309 1403 1.615424 TAAGCCCCCACCCTCTCAC 60.615 63.158 0.00 0.00 0.00 3.51
1322 1416 3.116590 ACCCTCTCACCATCATCATCCTA 60.117 47.826 0.00 0.00 0.00 2.94
1323 1417 4.102598 CCCTCTCACCATCATCATCCTAT 58.897 47.826 0.00 0.00 0.00 2.57
1324 1418 4.161942 CCCTCTCACCATCATCATCCTATC 59.838 50.000 0.00 0.00 0.00 2.08
1327 1421 5.347978 TCTCACCATCATCATCCTATCCAT 58.652 41.667 0.00 0.00 0.00 3.41
1328 1422 5.189145 TCTCACCATCATCATCCTATCCATG 59.811 44.000 0.00 0.00 0.00 3.66
1329 1423 4.226620 TCACCATCATCATCCTATCCATGG 59.773 45.833 4.97 4.97 36.23 3.66
1331 1425 3.202373 CCATCATCATCCTATCCATGGCT 59.798 47.826 6.96 0.00 0.00 4.75
1333 1427 3.523792 TCATCATCCTATCCATGGCTCA 58.476 45.455 6.96 0.00 0.00 4.26
1334 1428 4.109320 TCATCATCCTATCCATGGCTCAT 58.891 43.478 6.96 0.00 0.00 2.90
1335 1429 3.994931 TCATCCTATCCATGGCTCATG 57.005 47.619 6.96 4.88 41.10 3.07
1336 1430 3.523792 TCATCCTATCCATGGCTCATGA 58.476 45.455 6.96 7.18 43.81 3.07
1343 1449 2.041701 TCCATGGCTCATGATCGAGAA 58.958 47.619 6.96 0.00 43.81 2.87
1354 1460 4.280425 TCATGATCGAGAAGAGAGATTGGG 59.720 45.833 0.00 0.00 0.00 4.12
1453 1563 2.154462 ACTGTCTGGCCATCTTTTTCG 58.846 47.619 5.51 0.00 0.00 3.46
1458 1568 2.303022 TCTGGCCATCTTTTTCGTCTCT 59.697 45.455 5.51 0.00 0.00 3.10
1601 1713 1.216710 CAGCGACCTCTTCTGGGTC 59.783 63.158 3.08 3.08 46.93 4.46
1719 1845 7.092079 TGTTAATTTCTTACGATTCGACCTCA 58.908 34.615 13.95 0.00 0.00 3.86
1720 1846 7.062605 TGTTAATTTCTTACGATTCGACCTCAC 59.937 37.037 13.95 0.00 0.00 3.51
1721 1847 4.508461 TTTCTTACGATTCGACCTCACA 57.492 40.909 13.95 0.00 0.00 3.58
1732 1858 1.298859 GACCTCACATGTCCGTTGCC 61.299 60.000 0.00 0.00 0.00 4.52
1740 1866 3.056328 GTCCGTTGCCCCAAGAGC 61.056 66.667 0.00 0.00 0.00 4.09
1743 1869 1.224592 CCGTTGCCCCAAGAGCTAT 59.775 57.895 0.00 0.00 0.00 2.97
1766 1892 3.050523 TCCGGGGGCTAAGTAGTTAAT 57.949 47.619 0.00 0.00 0.00 1.40
1804 1939 5.133221 GGTAGGATTTGTTGCATGGTAGAT 58.867 41.667 0.00 0.00 0.00 1.98
1892 2065 0.879090 CGGGGAAGAAAAGGGAAACG 59.121 55.000 0.00 0.00 0.00 3.60
1901 2074 2.094762 AAAGGGAAACGATCACGGAG 57.905 50.000 0.00 0.00 44.46 4.63
1906 2079 1.683790 GAAACGATCACGGAGGCACG 61.684 60.000 0.00 0.00 44.46 5.34
2062 2259 6.655003 TGTAATCTTGTTGGAGGTTGAGATTC 59.345 38.462 0.00 0.00 35.91 2.52
2064 2261 4.389374 TCTTGTTGGAGGTTGAGATTCAC 58.611 43.478 0.00 0.00 0.00 3.18
2085 2282 4.092821 CACGACTCTTGTGACAGTGAAAAA 59.907 41.667 0.00 0.00 39.73 1.94
2109 2306 9.900710 AAATATTTACGCTTTACACACATTTGA 57.099 25.926 0.00 0.00 0.00 2.69
2184 2384 7.041780 TGTCTCTTCTTCATGTTCTTGCTTAAC 60.042 37.037 0.00 0.00 0.00 2.01
2185 2385 6.146184 TCTCTTCTTCATGTTCTTGCTTAACG 59.854 38.462 0.00 0.00 0.00 3.18
2186 2386 5.758296 TCTTCTTCATGTTCTTGCTTAACGT 59.242 36.000 0.00 0.00 0.00 3.99
2187 2387 5.342806 TCTTCATGTTCTTGCTTAACGTG 57.657 39.130 10.49 10.49 42.59 4.49
2188 2388 4.814234 TCTTCATGTTCTTGCTTAACGTGT 59.186 37.500 14.19 0.00 42.11 4.49
2190 2390 5.090652 TCATGTTCTTGCTTAACGTGTTC 57.909 39.130 14.19 0.00 42.11 3.18
2191 2391 3.955771 TGTTCTTGCTTAACGTGTTCC 57.044 42.857 0.00 0.00 0.00 3.62
2192 2392 2.614983 TGTTCTTGCTTAACGTGTTCCC 59.385 45.455 0.00 0.00 0.00 3.97
2200 2400 4.214545 TGCTTAACGTGTTCCCTAAATGTG 59.785 41.667 0.00 0.00 0.00 3.21
2204 2404 2.105134 ACGTGTTCCCTAAATGTGACCA 59.895 45.455 0.00 0.00 0.00 4.02
2211 2411 2.486592 CCCTAAATGTGACCACGTTTCC 59.513 50.000 19.82 0.00 44.60 3.13
2239 2440 3.627577 ACGGCGATATTTTGAGCAGAATT 59.372 39.130 16.62 0.00 0.00 2.17
2322 2523 1.142748 CCTGTGCGATCTCCAGACC 59.857 63.158 5.11 0.00 0.00 3.85
2334 2535 0.895100 TCCAGACCCAATGCAACAGC 60.895 55.000 0.00 0.00 0.00 4.40
2404 2605 3.636231 CGTCCAAGGGGGTGCTCA 61.636 66.667 0.00 0.00 38.11 4.26
2429 2630 1.001597 GGACGTCCTATACCTTGCGAG 60.002 57.143 27.64 0.00 0.00 5.03
2457 2658 1.065126 GGGAAGTCCAAGATCACCCAG 60.065 57.143 0.00 0.00 37.91 4.45
2500 2701 9.574516 GGTATGTCCCTTGTGATCTATTATTTT 57.425 33.333 0.00 0.00 0.00 1.82
2528 2729 8.684973 GACTCTATTGTAGTGTCAATAAACGT 57.315 34.615 12.00 0.00 44.48 3.99
2529 2730 8.684973 ACTCTATTGTAGTGTCAATAAACGTC 57.315 34.615 0.00 0.00 39.01 4.34
2530 2731 8.521176 ACTCTATTGTAGTGTCAATAAACGTCT 58.479 33.333 0.00 0.00 39.01 4.18
2531 2732 9.355215 CTCTATTGTAGTGTCAATAAACGTCTT 57.645 33.333 0.00 0.00 39.01 3.01
2534 2735 8.821147 ATTGTAGTGTCAATAAACGTCTTACA 57.179 30.769 0.00 0.00 36.44 2.41
2535 2736 8.821147 TTGTAGTGTCAATAAACGTCTTACAT 57.179 30.769 0.00 0.00 0.00 2.29
2536 2737 8.821147 TGTAGTGTCAATAAACGTCTTACATT 57.179 30.769 0.00 0.00 0.00 2.71
2537 2738 9.911138 TGTAGTGTCAATAAACGTCTTACATTA 57.089 29.630 0.00 0.00 0.00 1.90
2540 2741 8.879759 AGTGTCAATAAACGTCTTACATTATGG 58.120 33.333 0.00 0.00 0.00 2.74
2541 2742 8.120465 GTGTCAATAAACGTCTTACATTATGGG 58.880 37.037 0.00 0.00 0.00 4.00
2542 2743 8.041919 TGTCAATAAACGTCTTACATTATGGGA 58.958 33.333 0.00 0.00 0.00 4.37
2543 2744 8.333186 GTCAATAAACGTCTTACATTATGGGAC 58.667 37.037 0.00 1.75 0.00 4.46
2546 2747 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2547 2748 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2548 2749 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2549 2750 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2550 2751 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2572 2773 1.898938 ACATGACAATGCGCAATTCG 58.101 45.000 17.11 5.59 37.29 3.34
2768 2981 3.512724 CCAATTCCTTCTCCATGTGCTTT 59.487 43.478 0.00 0.00 0.00 3.51
2860 3073 7.358352 GCTGAACATTTACAAACACAAGTATGC 60.358 37.037 0.00 0.00 0.00 3.14
2910 3123 6.552445 AGCAAACAATATAGGTCTCTGACT 57.448 37.500 0.00 0.00 32.47 3.41
2911 3124 6.951971 AGCAAACAATATAGGTCTCTGACTT 58.048 36.000 0.00 0.00 32.47 3.01
2923 3136 3.550678 GTCTCTGACTTTTTCACGACGTT 59.449 43.478 0.00 0.00 0.00 3.99
2947 3160 1.576356 CGCTCTATTTCTGCAGTCCC 58.424 55.000 14.67 0.00 0.00 4.46
3249 3462 1.003438 GAAATCAGGCCGATTCTTCGC 60.003 52.381 18.78 7.07 43.83 4.70
3254 3467 3.929948 GCCGATTCTTCGCTGCCG 61.930 66.667 0.00 0.00 44.12 5.69
3329 3550 5.590530 TGTGAGGCACATTTTTACAAACT 57.409 34.783 0.00 0.00 39.62 2.66
3340 3561 8.868916 CACATTTTTACAAACTACTGCTTGTTT 58.131 29.630 0.00 0.00 37.05 2.83
3371 3592 1.767088 TGGATATGCTGCTGCTCTCTT 59.233 47.619 17.00 0.00 40.48 2.85
3435 3656 2.949644 GGCGAAAGGTGGCAGTATATTT 59.050 45.455 0.00 0.00 0.00 1.40
3484 3705 3.846360 ACGGACATTTCTTCGGTAAGAG 58.154 45.455 0.00 0.00 42.60 2.85
3521 3744 4.502105 TTCATCCAGCCATGTAAGCTAA 57.498 40.909 0.00 0.00 38.95 3.09
3522 3745 4.077300 TCATCCAGCCATGTAAGCTAAG 57.923 45.455 0.00 0.00 38.95 2.18
3523 3746 2.332063 TCCAGCCATGTAAGCTAAGC 57.668 50.000 0.00 0.00 38.95 3.09
3524 3747 1.839994 TCCAGCCATGTAAGCTAAGCT 59.160 47.619 0.00 0.00 42.56 3.74
3525 3748 3.038280 TCCAGCCATGTAAGCTAAGCTA 58.962 45.455 0.00 0.00 38.25 3.32
3651 3874 3.497332 TCCTGTACTCTACACTGTTGCT 58.503 45.455 0.00 0.00 34.46 3.91
3819 4057 9.520204 GAACCAATGATTAATGAATAACCACTG 57.480 33.333 0.00 0.00 0.00 3.66
3835 4074 3.084039 CCACTGCTTTTCAGATGCCTTA 58.916 45.455 0.00 0.00 45.72 2.69
3836 4075 3.507233 CCACTGCTTTTCAGATGCCTTAA 59.493 43.478 0.00 0.00 45.72 1.85
3885 4124 6.071616 GCTTTATTGGTCAGGTTTTATGTCCA 60.072 38.462 0.00 0.00 34.66 4.02
3992 4231 3.560896 TGTACGTACCTTTTTGCCTTGAC 59.439 43.478 22.43 0.00 0.00 3.18
4027 4266 0.248743 TCACCGTCGATAATCCACGC 60.249 55.000 0.00 0.00 32.03 5.34
4057 4296 1.047002 ACTGCTGTCTGCTCACTTCT 58.953 50.000 3.20 0.00 43.37 2.85
4166 4405 0.739813 CAACTCGACATCCCCCGAAC 60.740 60.000 0.00 0.00 34.17 3.95
4188 4427 2.567985 GGTTCTTCAGGTTCGGTTTCA 58.432 47.619 0.00 0.00 0.00 2.69
4192 4431 3.463944 TCTTCAGGTTCGGTTTCAGTTC 58.536 45.455 0.00 0.00 0.00 3.01
4198 4437 2.736197 TCGGTTTCAGTTCCCGAGA 58.264 52.632 0.00 0.00 45.20 4.04
4232 4474 2.490509 ACACACCATGCTTGTCATCATG 59.509 45.455 8.04 8.04 39.67 3.07
4264 4506 1.924320 GCTACAGCGTCGACCACTCT 61.924 60.000 10.58 0.00 0.00 3.24
4273 4515 1.067495 GTCGACCACTCTAGCAAGCTT 60.067 52.381 3.51 0.00 0.00 3.74
4318 4560 3.391382 CCTCCGAAACCCGCCTCT 61.391 66.667 0.00 0.00 36.84 3.69
4402 4644 4.388499 GCCAAGCCTTCGTCCGGA 62.388 66.667 0.00 0.00 0.00 5.14
4417 4659 1.226603 CGGATCGTCGGTCCACTTC 60.227 63.158 23.90 0.00 35.41 3.01
4458 4703 4.827087 CGCCATCGCTCCACTGCT 62.827 66.667 0.00 0.00 0.00 4.24
4459 4704 2.894387 GCCATCGCTCCACTGCTC 60.894 66.667 0.00 0.00 0.00 4.26
4542 4789 2.297315 TGATCACACACTCTCACACTCC 59.703 50.000 0.00 0.00 0.00 3.85
4753 5010 7.095313 CCACAGAATAATGATCATACTCACTGC 60.095 40.741 9.04 0.00 0.00 4.40
4862 5196 9.231297 TCGAATCAATCAATTATAAATCTCCCC 57.769 33.333 0.00 0.00 0.00 4.81
5077 6786 5.186996 TCCACTTGCACTTTTTGAAGATC 57.813 39.130 0.00 0.00 0.00 2.75
5377 7087 0.895530 TGGCTTCTTCGGACAGGTAG 59.104 55.000 0.00 0.00 0.00 3.18
5401 7111 4.594970 TGGAATGGACGAACAATTATGGT 58.405 39.130 0.00 0.00 0.00 3.55
5404 7114 5.449999 GGAATGGACGAACAATTATGGTTCC 60.450 44.000 6.87 0.00 41.16 3.62
5406 7116 2.353579 GGACGAACAATTATGGTTCCGG 59.646 50.000 6.87 0.00 41.16 5.14
5420 7130 1.486726 GTTCCGGGTCTCTCCATGATT 59.513 52.381 0.00 0.00 38.11 2.57
5421 7131 1.123077 TCCGGGTCTCTCCATGATTG 58.877 55.000 0.00 0.00 38.11 2.67
5422 7132 0.107456 CCGGGTCTCTCCATGATTGG 59.893 60.000 0.00 0.00 45.15 3.16
5432 7142 2.359981 CCATGATTGGAGCCATCACT 57.640 50.000 0.00 0.00 46.92 3.41
5433 7143 2.662866 CCATGATTGGAGCCATCACTT 58.337 47.619 0.00 0.00 46.92 3.16
5434 7144 3.028850 CCATGATTGGAGCCATCACTTT 58.971 45.455 0.00 0.00 46.92 2.66
5435 7145 3.449737 CCATGATTGGAGCCATCACTTTT 59.550 43.478 0.00 0.00 46.92 2.27
5436 7146 4.646040 CCATGATTGGAGCCATCACTTTTA 59.354 41.667 0.00 0.00 46.92 1.52
5437 7147 5.221185 CCATGATTGGAGCCATCACTTTTAG 60.221 44.000 0.00 0.00 46.92 1.85
5438 7148 5.178096 TGATTGGAGCCATCACTTTTAGA 57.822 39.130 0.00 0.00 0.00 2.10
5439 7149 5.569355 TGATTGGAGCCATCACTTTTAGAA 58.431 37.500 0.00 0.00 0.00 2.10
5440 7150 6.009589 TGATTGGAGCCATCACTTTTAGAAA 58.990 36.000 0.00 0.00 0.00 2.52
5441 7151 6.664816 TGATTGGAGCCATCACTTTTAGAAAT 59.335 34.615 0.00 0.00 0.00 2.17
5442 7152 5.902613 TGGAGCCATCACTTTTAGAAATG 57.097 39.130 0.00 0.00 0.00 2.32
5443 7153 4.158394 TGGAGCCATCACTTTTAGAAATGC 59.842 41.667 0.00 0.00 0.00 3.56
5444 7154 4.400567 GGAGCCATCACTTTTAGAAATGCT 59.599 41.667 0.00 0.00 0.00 3.79
5445 7155 5.105595 GGAGCCATCACTTTTAGAAATGCTT 60.106 40.000 0.00 0.00 0.00 3.91
5446 7156 5.717119 AGCCATCACTTTTAGAAATGCTTG 58.283 37.500 0.00 0.00 0.00 4.01
5447 7157 4.328169 GCCATCACTTTTAGAAATGCTTGC 59.672 41.667 0.00 0.00 0.00 4.01
5448 7158 5.472148 CCATCACTTTTAGAAATGCTTGCA 58.528 37.500 0.00 0.00 0.00 4.08
5449 7159 5.927689 CCATCACTTTTAGAAATGCTTGCAA 59.072 36.000 0.00 0.00 0.00 4.08
5450 7160 6.128742 CCATCACTTTTAGAAATGCTTGCAAC 60.129 38.462 0.00 0.00 0.00 4.17
5451 7161 5.288804 TCACTTTTAGAAATGCTTGCAACC 58.711 37.500 0.00 0.00 0.00 3.77
5452 7162 5.049167 CACTTTTAGAAATGCTTGCAACCA 58.951 37.500 0.00 0.00 0.00 3.67
5453 7163 5.049828 ACTTTTAGAAATGCTTGCAACCAC 58.950 37.500 0.00 0.00 0.00 4.16
5454 7164 3.658757 TTAGAAATGCTTGCAACCACC 57.341 42.857 0.00 0.00 0.00 4.61
5455 7165 0.681175 AGAAATGCTTGCAACCACCC 59.319 50.000 0.00 0.00 0.00 4.61
5456 7166 0.667184 GAAATGCTTGCAACCACCCG 60.667 55.000 0.00 0.00 0.00 5.28
5457 7167 2.713927 AAATGCTTGCAACCACCCGC 62.714 55.000 0.00 0.00 0.00 6.13
5460 7170 3.591835 CTTGCAACCACCCGCGTT 61.592 61.111 4.92 0.00 0.00 4.84
5461 7171 3.132481 CTTGCAACCACCCGCGTTT 62.132 57.895 4.92 0.00 0.00 3.60
5462 7172 1.787057 CTTGCAACCACCCGCGTTTA 61.787 55.000 4.92 0.00 0.00 2.01
5463 7173 1.787057 TTGCAACCACCCGCGTTTAG 61.787 55.000 4.92 0.00 0.00 1.85
5464 7174 1.962306 GCAACCACCCGCGTTTAGA 60.962 57.895 4.92 0.00 0.00 2.10
5465 7175 1.303091 GCAACCACCCGCGTTTAGAT 61.303 55.000 4.92 0.00 0.00 1.98
5466 7176 0.446222 CAACCACCCGCGTTTAGATG 59.554 55.000 4.92 0.00 0.00 2.90
5467 7177 0.322322 AACCACCCGCGTTTAGATGA 59.678 50.000 4.92 0.00 0.00 2.92
5468 7178 0.322322 ACCACCCGCGTTTAGATGAA 59.678 50.000 4.92 0.00 0.00 2.57
5469 7179 1.065709 ACCACCCGCGTTTAGATGAAT 60.066 47.619 4.92 0.00 0.00 2.57
5470 7180 2.014128 CCACCCGCGTTTAGATGAATT 58.986 47.619 4.92 0.00 0.00 2.17
5471 7181 3.199677 CCACCCGCGTTTAGATGAATTA 58.800 45.455 4.92 0.00 0.00 1.40
5472 7182 3.623960 CCACCCGCGTTTAGATGAATTAA 59.376 43.478 4.92 0.00 0.00 1.40
5473 7183 4.495184 CCACCCGCGTTTAGATGAATTAAC 60.495 45.833 4.92 0.00 0.00 2.01
5474 7184 4.331717 CACCCGCGTTTAGATGAATTAACT 59.668 41.667 4.92 0.00 0.00 2.24
5475 7185 4.331717 ACCCGCGTTTAGATGAATTAACTG 59.668 41.667 4.92 0.00 0.00 3.16
5476 7186 4.271687 CCGCGTTTAGATGAATTAACTGC 58.728 43.478 4.92 0.00 0.00 4.40
5477 7187 4.034048 CCGCGTTTAGATGAATTAACTGCT 59.966 41.667 4.92 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.389906 CCAAGAATAATCACAAGACAAACCC 58.610 40.000 0.00 0.00 0.00 4.11
1 2 6.015434 ACCCAAGAATAATCACAAGACAAACC 60.015 38.462 0.00 0.00 0.00 3.27
4 5 7.004086 AGAACCCAAGAATAATCACAAGACAA 58.996 34.615 0.00 0.00 0.00 3.18
6 7 7.308435 CAAGAACCCAAGAATAATCACAAGAC 58.692 38.462 0.00 0.00 0.00 3.01
7 8 6.071952 GCAAGAACCCAAGAATAATCACAAGA 60.072 38.462 0.00 0.00 0.00 3.02
8 9 6.095377 GCAAGAACCCAAGAATAATCACAAG 58.905 40.000 0.00 0.00 0.00 3.16
9 10 5.047377 GGCAAGAACCCAAGAATAATCACAA 60.047 40.000 0.00 0.00 0.00 3.33
10 11 4.462483 GGCAAGAACCCAAGAATAATCACA 59.538 41.667 0.00 0.00 0.00 3.58
11 12 4.438744 CGGCAAGAACCCAAGAATAATCAC 60.439 45.833 0.00 0.00 0.00 3.06
12 13 3.694072 CGGCAAGAACCCAAGAATAATCA 59.306 43.478 0.00 0.00 0.00 2.57
13 14 3.489229 GCGGCAAGAACCCAAGAATAATC 60.489 47.826 0.00 0.00 0.00 1.75
14 15 2.427095 GCGGCAAGAACCCAAGAATAAT 59.573 45.455 0.00 0.00 0.00 1.28
15 16 1.816224 GCGGCAAGAACCCAAGAATAA 59.184 47.619 0.00 0.00 0.00 1.40
16 17 1.459450 GCGGCAAGAACCCAAGAATA 58.541 50.000 0.00 0.00 0.00 1.75
17 18 1.586154 CGCGGCAAGAACCCAAGAAT 61.586 55.000 0.00 0.00 0.00 2.40
18 19 2.258013 CGCGGCAAGAACCCAAGAA 61.258 57.895 0.00 0.00 0.00 2.52
19 20 2.102109 TACGCGGCAAGAACCCAAGA 62.102 55.000 12.47 0.00 0.00 3.02
20 21 1.669760 TACGCGGCAAGAACCCAAG 60.670 57.895 12.47 0.00 0.00 3.61
21 22 1.962306 GTACGCGGCAAGAACCCAA 60.962 57.895 12.47 0.00 0.00 4.12
22 23 2.357760 GTACGCGGCAAGAACCCA 60.358 61.111 12.47 0.00 0.00 4.51
23 24 0.460635 TATGTACGCGGCAAGAACCC 60.461 55.000 12.47 0.00 0.00 4.11
24 25 0.648958 GTATGTACGCGGCAAGAACC 59.351 55.000 12.47 0.00 0.00 3.62
25 26 0.648958 GGTATGTACGCGGCAAGAAC 59.351 55.000 12.47 9.06 0.00 3.01
26 27 0.460635 GGGTATGTACGCGGCAAGAA 60.461 55.000 12.47 0.00 0.00 2.52
27 28 1.142314 GGGTATGTACGCGGCAAGA 59.858 57.895 12.47 0.00 0.00 3.02
28 29 1.885850 GGGGTATGTACGCGGCAAG 60.886 63.158 12.47 0.00 39.73 4.01
29 30 2.187424 GGGGTATGTACGCGGCAA 59.813 61.111 12.47 0.00 39.73 4.52
30 31 2.925416 TAGGGGGTATGTACGCGGCA 62.925 60.000 12.47 9.88 39.73 5.69
31 32 2.151049 CTAGGGGGTATGTACGCGGC 62.151 65.000 12.47 3.05 39.73 6.53
32 33 1.962144 CTAGGGGGTATGTACGCGG 59.038 63.158 12.47 0.00 39.73 6.46
33 34 1.177256 AGCTAGGGGGTATGTACGCG 61.177 60.000 3.53 3.53 39.73 6.01
34 35 1.000618 GAAGCTAGGGGGTATGTACGC 59.999 57.143 0.00 0.00 38.30 4.42
35 36 2.595238 AGAAGCTAGGGGGTATGTACG 58.405 52.381 0.00 0.00 0.00 3.67
36 37 4.738685 AGTAGAAGCTAGGGGGTATGTAC 58.261 47.826 0.00 0.00 0.00 2.90
37 38 4.202652 GGAGTAGAAGCTAGGGGGTATGTA 60.203 50.000 0.00 0.00 0.00 2.29
38 39 3.438225 GGAGTAGAAGCTAGGGGGTATGT 60.438 52.174 0.00 0.00 0.00 2.29
39 40 3.166679 GGAGTAGAAGCTAGGGGGTATG 58.833 54.545 0.00 0.00 0.00 2.39
40 41 2.112151 GGGAGTAGAAGCTAGGGGGTAT 59.888 54.545 0.00 0.00 0.00 2.73
41 42 1.502474 GGGAGTAGAAGCTAGGGGGTA 59.498 57.143 0.00 0.00 0.00 3.69
42 43 0.265254 GGGAGTAGAAGCTAGGGGGT 59.735 60.000 0.00 0.00 0.00 4.95
43 44 0.563672 AGGGAGTAGAAGCTAGGGGG 59.436 60.000 0.00 0.00 0.00 5.40
44 45 1.481615 GGAGGGAGTAGAAGCTAGGGG 60.482 61.905 0.00 0.00 0.00 4.79
45 46 1.820090 CGGAGGGAGTAGAAGCTAGGG 60.820 61.905 0.00 0.00 0.00 3.53
46 47 1.133730 ACGGAGGGAGTAGAAGCTAGG 60.134 57.143 0.00 0.00 0.00 3.02
47 48 2.351706 ACGGAGGGAGTAGAAGCTAG 57.648 55.000 0.00 0.00 0.00 3.42
48 49 2.822707 AACGGAGGGAGTAGAAGCTA 57.177 50.000 0.00 0.00 0.00 3.32
49 50 1.826096 GAAACGGAGGGAGTAGAAGCT 59.174 52.381 0.00 0.00 0.00 3.74
50 51 1.826096 AGAAACGGAGGGAGTAGAAGC 59.174 52.381 0.00 0.00 0.00 3.86
51 52 5.656213 TTTAGAAACGGAGGGAGTAGAAG 57.344 43.478 0.00 0.00 0.00 2.85
52 53 7.909485 ATATTTAGAAACGGAGGGAGTAGAA 57.091 36.000 0.00 0.00 0.00 2.10
53 54 9.075678 CTTATATTTAGAAACGGAGGGAGTAGA 57.924 37.037 0.00 0.00 0.00 2.59
54 55 8.858094 ACTTATATTTAGAAACGGAGGGAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
55 56 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
56 57 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
57 58 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
58 59 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
59 60 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
60 61 9.819267 AGAAAGACTTATATTTAGAAACGGAGG 57.181 33.333 0.00 0.00 0.00 4.30
90 91 7.987268 TCGTATGTAGTCACTTGATGAAATC 57.013 36.000 0.00 0.00 45.83 2.17
91 92 7.010552 GCTTCGTATGTAGTCACTTGATGAAAT 59.989 37.037 0.00 0.00 39.72 2.17
92 93 6.310467 GCTTCGTATGTAGTCACTTGATGAAA 59.690 38.462 0.00 0.00 39.72 2.69
93 94 5.805486 GCTTCGTATGTAGTCACTTGATGAA 59.195 40.000 0.00 0.00 39.72 2.57
94 95 5.105917 TGCTTCGTATGTAGTCACTTGATGA 60.106 40.000 0.00 0.00 33.79 2.92
95 96 5.102313 TGCTTCGTATGTAGTCACTTGATG 58.898 41.667 0.00 0.00 0.00 3.07
96 97 5.324784 TGCTTCGTATGTAGTCACTTGAT 57.675 39.130 0.00 0.00 0.00 2.57
97 98 4.776795 TGCTTCGTATGTAGTCACTTGA 57.223 40.909 0.00 0.00 0.00 3.02
98 99 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
99 100 5.408604 CCTTTTGCTTCGTATGTAGTCACTT 59.591 40.000 0.00 0.00 0.00 3.16
100 101 4.929808 CCTTTTGCTTCGTATGTAGTCACT 59.070 41.667 0.00 0.00 0.00 3.41
101 102 4.927425 TCCTTTTGCTTCGTATGTAGTCAC 59.073 41.667 0.00 0.00 0.00 3.67
102 103 5.142061 TCCTTTTGCTTCGTATGTAGTCA 57.858 39.130 0.00 0.00 0.00 3.41
103 104 5.062308 CACTCCTTTTGCTTCGTATGTAGTC 59.938 44.000 0.00 0.00 0.00 2.59
104 105 4.929808 CACTCCTTTTGCTTCGTATGTAGT 59.070 41.667 0.00 0.00 0.00 2.73
105 106 5.168569 TCACTCCTTTTGCTTCGTATGTAG 58.831 41.667 0.00 0.00 0.00 2.74
106 107 5.142061 TCACTCCTTTTGCTTCGTATGTA 57.858 39.130 0.00 0.00 0.00 2.29
107 108 4.002906 TCACTCCTTTTGCTTCGTATGT 57.997 40.909 0.00 0.00 0.00 2.29
108 109 5.551760 ATTCACTCCTTTTGCTTCGTATG 57.448 39.130 0.00 0.00 0.00 2.39
109 110 7.985184 TGTATATTCACTCCTTTTGCTTCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
110 111 7.277098 GTGTATATTCACTCCTTTTGCTTCGTA 59.723 37.037 5.30 0.00 35.68 3.43
111 112 6.092259 GTGTATATTCACTCCTTTTGCTTCGT 59.908 38.462 5.30 0.00 35.68 3.85
112 113 6.313905 AGTGTATATTCACTCCTTTTGCTTCG 59.686 38.462 9.03 0.00 44.07 3.79
113 114 7.617041 AGTGTATATTCACTCCTTTTGCTTC 57.383 36.000 9.03 0.00 44.07 3.86
114 115 8.322091 AGTAGTGTATATTCACTCCTTTTGCTT 58.678 33.333 17.20 0.00 45.79 3.91
115 116 7.852263 AGTAGTGTATATTCACTCCTTTTGCT 58.148 34.615 17.20 1.01 45.79 3.91
116 117 7.982354 AGAGTAGTGTATATTCACTCCTTTTGC 59.018 37.037 17.20 1.80 45.79 3.68
192 193 8.953313 CCCTCCGTTCTTAAATGTAAGTTTATT 58.047 33.333 2.53 0.00 38.33 1.40
193 194 8.323567 TCCCTCCGTTCTTAAATGTAAGTTTAT 58.676 33.333 2.53 0.00 38.33 1.40
194 195 7.678837 TCCCTCCGTTCTTAAATGTAAGTTTA 58.321 34.615 2.53 0.00 38.33 2.01
195 196 6.536447 TCCCTCCGTTCTTAAATGTAAGTTT 58.464 36.000 2.53 0.00 38.33 2.66
196 197 6.117975 TCCCTCCGTTCTTAAATGTAAGTT 57.882 37.500 2.53 0.00 38.33 2.66
197 198 5.247792 ACTCCCTCCGTTCTTAAATGTAAGT 59.752 40.000 2.53 0.00 38.33 2.24
198 199 5.731591 ACTCCCTCCGTTCTTAAATGTAAG 58.268 41.667 0.00 0.00 38.50 2.34
199 200 5.750352 ACTCCCTCCGTTCTTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
200 201 6.189859 TCTACTCCCTCCGTTCTTAAATGTA 58.810 40.000 0.00 0.00 0.00 2.29
201 202 5.021458 TCTACTCCCTCCGTTCTTAAATGT 58.979 41.667 0.00 0.00 0.00 2.71
202 203 5.593679 TCTACTCCCTCCGTTCTTAAATG 57.406 43.478 0.00 0.00 0.00 2.32
203 204 6.809976 ATTCTACTCCCTCCGTTCTTAAAT 57.190 37.500 0.00 0.00 0.00 1.40
204 205 7.121382 TCTATTCTACTCCCTCCGTTCTTAAA 58.879 38.462 0.00 0.00 0.00 1.52
205 206 6.666678 TCTATTCTACTCCCTCCGTTCTTAA 58.333 40.000 0.00 0.00 0.00 1.85
206 207 6.257994 TCTATTCTACTCCCTCCGTTCTTA 57.742 41.667 0.00 0.00 0.00 2.10
207 208 5.126699 TCTATTCTACTCCCTCCGTTCTT 57.873 43.478 0.00 0.00 0.00 2.52
208 209 4.792513 TCTATTCTACTCCCTCCGTTCT 57.207 45.455 0.00 0.00 0.00 3.01
209 210 6.240145 ACTATCTATTCTACTCCCTCCGTTC 58.760 44.000 0.00 0.00 0.00 3.95
210 211 6.203526 ACTATCTATTCTACTCCCTCCGTT 57.796 41.667 0.00 0.00 0.00 4.44
211 212 5.846528 ACTATCTATTCTACTCCCTCCGT 57.153 43.478 0.00 0.00 0.00 4.69
212 213 6.709281 TGTACTATCTATTCTACTCCCTCCG 58.291 44.000 0.00 0.00 0.00 4.63
213 214 7.825761 GTCTGTACTATCTATTCTACTCCCTCC 59.174 44.444 0.00 0.00 0.00 4.30
214 215 7.825761 GGTCTGTACTATCTATTCTACTCCCTC 59.174 44.444 0.00 0.00 0.00 4.30
215 216 7.295196 TGGTCTGTACTATCTATTCTACTCCCT 59.705 40.741 0.00 0.00 0.00 4.20
216 217 7.460071 TGGTCTGTACTATCTATTCTACTCCC 58.540 42.308 0.00 0.00 0.00 4.30
217 218 7.608761 CCTGGTCTGTACTATCTATTCTACTCC 59.391 44.444 0.00 0.00 0.00 3.85
218 219 8.377034 TCCTGGTCTGTACTATCTATTCTACTC 58.623 40.741 0.00 0.00 0.00 2.59
219 220 8.158789 GTCCTGGTCTGTACTATCTATTCTACT 58.841 40.741 0.00 0.00 0.00 2.57
220 221 7.118101 CGTCCTGGTCTGTACTATCTATTCTAC 59.882 44.444 0.00 0.00 0.00 2.59
221 222 7.160049 CGTCCTGGTCTGTACTATCTATTCTA 58.840 42.308 0.00 0.00 0.00 2.10
222 223 5.998981 CGTCCTGGTCTGTACTATCTATTCT 59.001 44.000 0.00 0.00 0.00 2.40
223 224 5.181622 CCGTCCTGGTCTGTACTATCTATTC 59.818 48.000 0.00 0.00 0.00 1.75
224 225 5.071370 CCGTCCTGGTCTGTACTATCTATT 58.929 45.833 0.00 0.00 0.00 1.73
225 226 4.653868 CCGTCCTGGTCTGTACTATCTAT 58.346 47.826 0.00 0.00 0.00 1.98
226 227 3.746751 GCCGTCCTGGTCTGTACTATCTA 60.747 52.174 0.00 0.00 41.21 1.98
227 228 2.933573 CCGTCCTGGTCTGTACTATCT 58.066 52.381 0.00 0.00 0.00 1.98
228 229 1.337387 GCCGTCCTGGTCTGTACTATC 59.663 57.143 0.00 0.00 41.21 2.08
229 230 1.400737 GCCGTCCTGGTCTGTACTAT 58.599 55.000 0.00 0.00 41.21 2.12
230 231 1.028330 CGCCGTCCTGGTCTGTACTA 61.028 60.000 0.00 0.00 41.21 1.82
231 232 2.341101 CGCCGTCCTGGTCTGTACT 61.341 63.158 0.00 0.00 41.21 2.73
232 233 2.181021 CGCCGTCCTGGTCTGTAC 59.819 66.667 0.00 0.00 41.21 2.90
233 234 2.482796 TACCGCCGTCCTGGTCTGTA 62.483 60.000 0.00 0.00 39.70 2.74
234 235 3.873679 TACCGCCGTCCTGGTCTGT 62.874 63.158 0.00 0.00 39.70 3.41
235 236 3.064987 CTACCGCCGTCCTGGTCTG 62.065 68.421 0.00 0.00 39.70 3.51
236 237 2.202236 TACTACCGCCGTCCTGGTCT 62.202 60.000 0.00 0.00 39.70 3.85
237 238 1.105759 ATACTACCGCCGTCCTGGTC 61.106 60.000 0.00 0.00 39.70 4.02
238 239 0.183492 TATACTACCGCCGTCCTGGT 59.817 55.000 0.00 0.00 42.34 4.00
239 240 0.879765 CTATACTACCGCCGTCCTGG 59.120 60.000 0.00 0.00 42.50 4.45
240 241 1.888215 TCTATACTACCGCCGTCCTG 58.112 55.000 0.00 0.00 0.00 3.86
241 242 2.875094 ATCTATACTACCGCCGTCCT 57.125 50.000 0.00 0.00 0.00 3.85
242 243 3.866651 TCTATCTATACTACCGCCGTCC 58.133 50.000 0.00 0.00 0.00 4.79
243 244 4.272991 CCATCTATCTATACTACCGCCGTC 59.727 50.000 0.00 0.00 0.00 4.79
244 245 4.197750 CCATCTATCTATACTACCGCCGT 58.802 47.826 0.00 0.00 0.00 5.68
245 246 3.003482 GCCATCTATCTATACTACCGCCG 59.997 52.174 0.00 0.00 0.00 6.46
246 247 3.952323 TGCCATCTATCTATACTACCGCC 59.048 47.826 0.00 0.00 0.00 6.13
247 248 5.105877 TGTTGCCATCTATCTATACTACCGC 60.106 44.000 0.00 0.00 0.00 5.68
248 249 6.374613 TCTGTTGCCATCTATCTATACTACCG 59.625 42.308 0.00 0.00 0.00 4.02
249 250 7.612244 TCTCTGTTGCCATCTATCTATACTACC 59.388 40.741 0.00 0.00 0.00 3.18
250 251 8.455682 GTCTCTGTTGCCATCTATCTATACTAC 58.544 40.741 0.00 0.00 0.00 2.73
251 252 8.164070 TGTCTCTGTTGCCATCTATCTATACTA 58.836 37.037 0.00 0.00 0.00 1.82
252 253 7.007116 TGTCTCTGTTGCCATCTATCTATACT 58.993 38.462 0.00 0.00 0.00 2.12
253 254 7.220741 TGTCTCTGTTGCCATCTATCTATAC 57.779 40.000 0.00 0.00 0.00 1.47
254 255 7.452813 ACATGTCTCTGTTGCCATCTATCTATA 59.547 37.037 0.00 0.00 0.00 1.31
255 256 6.269538 ACATGTCTCTGTTGCCATCTATCTAT 59.730 38.462 0.00 0.00 0.00 1.98
256 257 5.600069 ACATGTCTCTGTTGCCATCTATCTA 59.400 40.000 0.00 0.00 0.00 1.98
257 258 4.408270 ACATGTCTCTGTTGCCATCTATCT 59.592 41.667 0.00 0.00 0.00 1.98
258 259 4.701765 ACATGTCTCTGTTGCCATCTATC 58.298 43.478 0.00 0.00 0.00 2.08
259 260 4.767578 ACATGTCTCTGTTGCCATCTAT 57.232 40.909 0.00 0.00 0.00 1.98
260 261 5.453762 CCATACATGTCTCTGTTGCCATCTA 60.454 44.000 0.00 0.00 0.00 1.98
272 273 1.202698 GGACCCTGCCATACATGTCTC 60.203 57.143 0.00 0.00 32.96 3.36
281 282 1.852157 TGGACTTGGACCCTGCCAT 60.852 57.895 0.00 0.00 37.86 4.40
303 304 2.515854 TGCCTGCCCAATAAAACGTTA 58.484 42.857 0.00 0.00 0.00 3.18
331 333 1.153958 GGTACGAGTACACCACGGC 60.154 63.158 14.40 0.00 37.78 5.68
346 348 0.472352 ACGGTGAGGGGTCAAAGGTA 60.472 55.000 0.00 0.00 0.00 3.08
352 354 1.052124 AGAAACACGGTGAGGGGTCA 61.052 55.000 16.29 0.00 0.00 4.02
353 355 0.602905 CAGAAACACGGTGAGGGGTC 60.603 60.000 16.29 4.42 0.00 4.46
360 368 2.177580 ACACGGCAGAAACACGGTG 61.178 57.895 6.58 6.58 41.38 4.94
366 374 0.586802 GTCTTCCACACGGCAGAAAC 59.413 55.000 0.00 0.00 36.23 2.78
367 375 0.534203 GGTCTTCCACACGGCAGAAA 60.534 55.000 0.00 0.00 36.23 2.52
383 391 0.682209 TCCCTAGCGTGGTGTAGGTC 60.682 60.000 0.00 0.00 34.96 3.85
396 404 0.181587 TCGAGTCTGAGCCTCCCTAG 59.818 60.000 0.00 0.00 0.00 3.02
398 406 1.379309 GTCGAGTCTGAGCCTCCCT 60.379 63.158 0.00 0.00 0.00 4.20
400 408 1.711060 CGAGTCGAGTCTGAGCCTCC 61.711 65.000 17.82 0.00 0.00 4.30
401 409 0.741574 TCGAGTCGAGTCTGAGCCTC 60.742 60.000 12.09 2.23 0.00 4.70
402 410 1.022451 GTCGAGTCGAGTCTGAGCCT 61.022 60.000 17.12 0.00 36.23 4.58
403 411 1.022451 AGTCGAGTCGAGTCTGAGCC 61.022 60.000 17.12 1.07 34.15 4.70
404 412 2.462503 AGTCGAGTCGAGTCTGAGC 58.537 57.895 17.12 1.89 34.15 4.26
413 431 3.314339 GACCACATGAGTCGAGTCG 57.686 57.895 15.29 6.09 0.00 4.18
422 440 1.083806 GCGAATCAGCGACCACATGA 61.084 55.000 0.00 0.00 0.00 3.07
423 441 1.349627 GCGAATCAGCGACCACATG 59.650 57.895 0.00 0.00 0.00 3.21
424 442 1.815421 GGCGAATCAGCGACCACAT 60.815 57.895 0.00 0.00 38.18 3.21
426 444 3.554692 CGGCGAATCAGCGACCAC 61.555 66.667 0.00 0.00 35.40 4.16
429 447 1.812214 GATCACGGCGAATCAGCGAC 61.812 60.000 16.62 0.00 38.18 5.19
432 450 0.510359 GATGATCACGGCGAATCAGC 59.490 55.000 25.03 23.48 0.00 4.26
433 451 1.856802 TGATGATCACGGCGAATCAG 58.143 50.000 25.03 8.25 0.00 2.90
436 454 1.422388 CGATGATGATCACGGCGAAT 58.578 50.000 16.62 6.57 0.00 3.34
498 520 2.034999 TTCACACCGATTGGCCCC 59.965 61.111 0.00 0.00 39.70 5.80
506 532 2.513259 GGTCCTGGGTTCACACCGA 61.513 63.158 0.00 0.00 45.39 4.69
545 571 0.936764 CGATCTGATGACGCGGAAGG 60.937 60.000 12.47 0.00 0.00 3.46
546 572 0.936764 CCGATCTGATGACGCGGAAG 60.937 60.000 12.47 0.00 42.47 3.46
547 573 1.065764 CCGATCTGATGACGCGGAA 59.934 57.895 12.47 0.00 42.47 4.30
548 574 2.721859 CCGATCTGATGACGCGGA 59.278 61.111 12.47 0.00 42.47 5.54
549 575 3.032609 GCCGATCTGATGACGCGG 61.033 66.667 12.47 10.24 42.63 6.46
550 576 3.032609 GGCCGATCTGATGACGCG 61.033 66.667 3.53 3.53 0.00 6.01
551 577 1.663074 GAGGCCGATCTGATGACGC 60.663 63.158 0.00 0.00 0.00 5.19
552 578 1.371022 CGAGGCCGATCTGATGACG 60.371 63.158 0.00 0.00 38.22 4.35
553 579 0.318275 GACGAGGCCGATCTGATGAC 60.318 60.000 0.00 0.00 39.50 3.06
554 580 1.786049 CGACGAGGCCGATCTGATGA 61.786 60.000 0.00 0.00 39.50 2.92
555 581 1.371022 CGACGAGGCCGATCTGATG 60.371 63.158 0.00 0.00 39.50 3.07
625 667 0.528901 GGTTGTTTGTTTGGGTCGGC 60.529 55.000 0.00 0.00 0.00 5.54
628 670 3.004171 GGTTTGGTTGTTTGTTTGGGTC 58.996 45.455 0.00 0.00 0.00 4.46
637 679 0.391228 GCGATGGGGTTTGGTTGTTT 59.609 50.000 0.00 0.00 0.00 2.83
638 680 0.469144 AGCGATGGGGTTTGGTTGTT 60.469 50.000 0.00 0.00 0.00 2.83
640 682 1.595093 GGAGCGATGGGGTTTGGTTG 61.595 60.000 0.00 0.00 0.00 3.77
655 697 2.672714 GTTTGATTTTCCGTTGGGAGC 58.327 47.619 0.00 0.00 44.98 4.70
731 814 4.824515 AGAGAGCGACGGGAGGGG 62.825 72.222 0.00 0.00 0.00 4.79
732 815 3.213402 GAGAGAGCGACGGGAGGG 61.213 72.222 0.00 0.00 0.00 4.30
733 816 2.124487 AGAGAGAGCGACGGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
734 817 2.530497 CGAGAGAGAGCGACGGGAG 61.530 68.421 0.00 0.00 0.00 4.30
735 818 2.511829 CGAGAGAGAGCGACGGGA 60.512 66.667 0.00 0.00 0.00 5.14
892 975 2.148702 TGGAGGGAAGGAAGGGAAAAA 58.851 47.619 0.00 0.00 0.00 1.94
898 981 1.135960 GAGGATGGAGGGAAGGAAGG 58.864 60.000 0.00 0.00 0.00 3.46
1298 1392 1.206878 TGATGATGGTGAGAGGGTGG 58.793 55.000 0.00 0.00 0.00 4.61
1300 1394 2.053244 GGATGATGATGGTGAGAGGGT 58.947 52.381 0.00 0.00 0.00 4.34
1309 1403 3.202373 AGCCATGGATAGGATGATGATGG 59.798 47.826 18.40 0.00 33.42 3.51
1322 1416 2.254508 TCTCGATCATGAGCCATGGAT 58.745 47.619 18.40 10.08 41.66 3.41
1323 1417 1.708341 TCTCGATCATGAGCCATGGA 58.292 50.000 18.40 0.00 41.66 3.41
1324 1418 2.036862 TCTTCTCGATCATGAGCCATGG 59.963 50.000 7.63 7.63 41.66 3.66
1327 1421 2.622470 CTCTCTTCTCGATCATGAGCCA 59.378 50.000 5.18 0.00 35.90 4.75
1328 1422 2.884012 TCTCTCTTCTCGATCATGAGCC 59.116 50.000 5.18 0.00 35.90 4.70
1329 1423 4.771590 ATCTCTCTTCTCGATCATGAGC 57.228 45.455 0.00 0.00 35.90 4.26
1331 1425 4.280425 CCCAATCTCTCTTCTCGATCATGA 59.720 45.833 0.00 0.00 0.00 3.07
1333 1427 4.478203 TCCCAATCTCTCTTCTCGATCAT 58.522 43.478 0.00 0.00 0.00 2.45
1334 1428 3.888323 CTCCCAATCTCTCTTCTCGATCA 59.112 47.826 0.00 0.00 0.00 2.92
1335 1429 3.305335 GCTCCCAATCTCTCTTCTCGATC 60.305 52.174 0.00 0.00 0.00 3.69
1336 1430 2.627699 GCTCCCAATCTCTCTTCTCGAT 59.372 50.000 0.00 0.00 0.00 3.59
1343 1449 6.672266 TTTATTATCGCTCCCAATCTCTCT 57.328 37.500 0.00 0.00 0.00 3.10
1354 1460 3.059570 CGATCGGTGCTTTATTATCGCTC 59.940 47.826 7.38 0.00 31.14 5.03
1453 1563 5.008118 ACTTCTTTAGCACAAAAGCAGAGAC 59.992 40.000 10.97 0.00 34.56 3.36
1458 1568 4.566360 GCAAACTTCTTTAGCACAAAAGCA 59.434 37.500 0.00 0.00 36.58 3.91
1601 1713 3.965539 CTTGAGGCAGTCGCAGGGG 62.966 68.421 0.00 0.00 41.24 4.79
1628 1740 0.312416 CGTATTCTGGCGAGGAGAGG 59.688 60.000 0.00 0.00 0.00 3.69
1719 1845 1.603455 CTTGGGGCAACGGACATGT 60.603 57.895 0.00 0.00 37.60 3.21
1720 1846 1.303236 TCTTGGGGCAACGGACATG 60.303 57.895 0.00 0.00 37.60 3.21
1721 1847 1.002134 CTCTTGGGGCAACGGACAT 60.002 57.895 0.00 0.00 37.60 3.06
1732 1858 1.680338 CCCGGAAAATAGCTCTTGGG 58.320 55.000 0.73 0.00 0.00 4.12
1740 1866 3.390311 ACTACTTAGCCCCCGGAAAATAG 59.610 47.826 0.73 0.00 0.00 1.73
1743 1869 1.660242 ACTACTTAGCCCCCGGAAAA 58.340 50.000 0.73 0.00 0.00 2.29
1766 1892 7.093201 ACAAATCCTACCGTAATCTTCTGGTAA 60.093 37.037 0.00 0.00 36.58 2.85
1892 2065 1.805945 GTGTCGTGCCTCCGTGATC 60.806 63.158 0.00 0.00 0.00 2.92
2062 2259 2.492019 TCACTGTCACAAGAGTCGTG 57.508 50.000 4.37 4.37 35.63 4.35
2064 2261 4.857871 TTTTTCACTGTCACAAGAGTCG 57.142 40.909 0.00 0.00 0.00 4.18
2085 2282 9.502145 CATCAAATGTGTGTAAAGCGTAAATAT 57.498 29.630 0.00 0.00 0.00 1.28
2109 2306 9.376075 GTCGTCAATTAGGATATCATGATTCAT 57.624 33.333 14.65 11.11 0.00 2.57
2184 2384 2.773487 TGGTCACATTTAGGGAACACG 58.227 47.619 0.00 0.00 39.88 4.49
2187 2387 2.774687 ACGTGGTCACATTTAGGGAAC 58.225 47.619 1.90 0.00 38.08 3.62
2188 2388 3.495434 AACGTGGTCACATTTAGGGAA 57.505 42.857 0.00 0.00 0.00 3.97
2190 2390 2.486592 GGAAACGTGGTCACATTTAGGG 59.513 50.000 0.00 0.00 25.86 3.53
2191 2391 3.824414 GGAAACGTGGTCACATTTAGG 57.176 47.619 0.00 0.00 25.86 2.69
2211 2411 3.342269 CTCAAAATATCGCCGTTTCACG 58.658 45.455 0.00 0.00 42.11 4.35
2214 2414 3.063452 TCTGCTCAAAATATCGCCGTTTC 59.937 43.478 0.00 0.00 0.00 2.78
2224 2425 7.803189 GTCGAACTTCAAATTCTGCTCAAAATA 59.197 33.333 0.00 0.00 0.00 1.40
2239 2440 2.121786 GCTGTACACGTCGAACTTCAA 58.878 47.619 0.00 0.00 0.00 2.69
2394 2595 2.764128 TCCTCGATGAGCACCCCC 60.764 66.667 0.00 0.00 0.00 5.40
2404 2605 3.147629 CAAGGTATAGGACGTCCTCGAT 58.852 50.000 39.49 29.07 44.77 3.59
2412 2613 0.660595 CGCTCGCAAGGTATAGGACG 60.661 60.000 0.00 0.00 38.47 4.79
2418 2619 1.437986 GGACTCGCTCGCAAGGTAT 59.562 57.895 0.00 0.00 38.47 2.73
2429 2630 2.837371 CTTGGACTTCCCGGACTCGC 62.837 65.000 0.73 0.00 37.93 5.03
2457 2658 1.530655 CCCGAATGTTATGGGGGCC 60.531 63.158 0.00 0.00 39.39 5.80
2503 2704 8.684973 ACGTTTATTGACACTACAATAGAGTC 57.315 34.615 6.51 6.51 43.72 3.36
2504 2705 8.521176 AGACGTTTATTGACACTACAATAGAGT 58.479 33.333 0.00 0.00 41.59 3.24
2505 2706 8.912787 AGACGTTTATTGACACTACAATAGAG 57.087 34.615 0.00 0.00 41.59 2.43
2508 2709 9.911138 TGTAAGACGTTTATTGACACTACAATA 57.089 29.630 0.00 0.00 40.36 1.90
2509 2710 8.821147 TGTAAGACGTTTATTGACACTACAAT 57.179 30.769 0.00 0.00 42.17 2.71
2510 2711 8.821147 ATGTAAGACGTTTATTGACACTACAA 57.179 30.769 0.00 0.00 0.00 2.41
2511 2712 8.821147 AATGTAAGACGTTTATTGACACTACA 57.179 30.769 0.00 0.00 0.00 2.74
2514 2715 8.879759 CCATAATGTAAGACGTTTATTGACACT 58.120 33.333 0.00 0.00 0.00 3.55
2515 2716 8.120465 CCCATAATGTAAGACGTTTATTGACAC 58.880 37.037 0.00 0.00 0.00 3.67
2516 2717 8.041919 TCCCATAATGTAAGACGTTTATTGACA 58.958 33.333 0.00 0.00 0.00 3.58
2517 2718 8.333186 GTCCCATAATGTAAGACGTTTATTGAC 58.667 37.037 0.00 0.00 0.00 3.18
2518 2719 7.223193 CGTCCCATAATGTAAGACGTTTATTGA 59.777 37.037 2.88 0.00 43.89 2.57
2519 2720 7.342194 CGTCCCATAATGTAAGACGTTTATTG 58.658 38.462 2.88 0.00 43.89 1.90
2520 2721 6.480981 CCGTCCCATAATGTAAGACGTTTATT 59.519 38.462 9.63 0.00 46.62 1.40
2521 2722 5.987347 CCGTCCCATAATGTAAGACGTTTAT 59.013 40.000 9.63 0.00 46.62 1.40
2522 2723 5.126869 TCCGTCCCATAATGTAAGACGTTTA 59.873 40.000 9.63 0.00 46.62 2.01
2523 2724 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2524 2725 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2525 2726 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2527 2728 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2528 2729 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2529 2730 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2530 2731 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2531 2732 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2532 2733 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2533 2734 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2534 2735 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2535 2736 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2536 2737 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2537 2738 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2538 2739 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2539 2740 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2540 2741 0.745468 GTCATGTACTCCCTCCGTCC 59.255 60.000 0.00 0.00 0.00 4.79
2541 2742 1.471119 TGTCATGTACTCCCTCCGTC 58.529 55.000 0.00 0.00 0.00 4.79
2542 2743 1.933021 TTGTCATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
2543 2744 2.826428 CATTGTCATGTACTCCCTCCG 58.174 52.381 0.00 0.00 0.00 4.63
2544 2745 2.565841 GCATTGTCATGTACTCCCTCC 58.434 52.381 0.00 0.00 32.28 4.30
2545 2746 2.205074 CGCATTGTCATGTACTCCCTC 58.795 52.381 0.00 0.00 32.28 4.30
2546 2747 1.743772 GCGCATTGTCATGTACTCCCT 60.744 52.381 0.30 0.00 32.28 4.20
2547 2748 0.657840 GCGCATTGTCATGTACTCCC 59.342 55.000 0.30 0.00 32.28 4.30
2548 2749 1.368641 TGCGCATTGTCATGTACTCC 58.631 50.000 5.66 0.00 32.28 3.85
2549 2750 3.680642 ATTGCGCATTGTCATGTACTC 57.319 42.857 12.75 0.00 32.28 2.59
2550 2751 3.485711 CGAATTGCGCATTGTCATGTACT 60.486 43.478 12.75 0.00 32.28 2.73
2572 2773 3.817647 ACAGAAAAATGAGCAGTGACTCC 59.182 43.478 10.72 0.00 35.72 3.85
2651 2864 2.457080 GGCACTGCCTAGAAACGAC 58.543 57.895 13.28 0.00 46.69 4.34
2768 2981 1.213619 TGCCATGACCATCTTCCCCA 61.214 55.000 0.00 0.00 0.00 4.96
2860 3073 6.473455 GTGAAACTGTGAGAAATGAAAACAGG 59.527 38.462 6.13 0.00 42.00 4.00
2923 3136 2.230940 GCAGAAATAGAGCGCGCGA 61.231 57.895 37.18 13.84 0.00 5.87
2947 3160 7.543868 GCTCCTATGATGCTAATGTTGTAGTAG 59.456 40.741 0.00 0.00 0.00 2.57
3249 3462 4.342772 GTGTAGCAATATTCAAACGGCAG 58.657 43.478 0.00 0.00 0.00 4.85
3254 3467 7.996385 ACCTTATGGTGTAGCAATATTCAAAC 58.004 34.615 0.00 0.00 46.51 2.93
3329 3550 5.643348 CCATCAGATACACAAACAAGCAGTA 59.357 40.000 0.00 0.00 0.00 2.74
3340 3561 4.285260 AGCAGCATATCCATCAGATACACA 59.715 41.667 0.00 0.00 40.31 3.72
3341 3562 4.630505 CAGCAGCATATCCATCAGATACAC 59.369 45.833 0.00 0.00 40.31 2.90
3371 3592 1.130054 AAGAGCTCCCTTGGCACTGA 61.130 55.000 10.93 0.00 31.59 3.41
3435 3656 6.064060 GGTGATTATTGGATCATTGACAGGA 58.936 40.000 0.00 0.00 38.25 3.86
3484 3705 6.304356 TGGATGAAATTAGCATCGATGTTC 57.696 37.500 25.47 19.71 42.32 3.18
3521 3744 7.226325 CAGCAAGATTAAATTCACTAGCTAGCT 59.774 37.037 23.12 23.12 0.00 3.32
3522 3745 7.351223 CAGCAAGATTAAATTCACTAGCTAGC 58.649 38.462 20.91 6.62 0.00 3.42
3523 3746 7.226325 AGCAGCAAGATTAAATTCACTAGCTAG 59.774 37.037 19.44 19.44 0.00 3.42
3524 3747 7.050377 AGCAGCAAGATTAAATTCACTAGCTA 58.950 34.615 0.00 0.00 0.00 3.32
3525 3748 5.884792 AGCAGCAAGATTAAATTCACTAGCT 59.115 36.000 0.00 0.00 0.00 3.32
3819 4057 7.546667 TGAAAATGATTAAGGCATCTGAAAAGC 59.453 33.333 0.00 0.00 0.00 3.51
3835 4074 4.282703 AGCAAAGCAGGTCTGAAAATGATT 59.717 37.500 1.65 0.00 0.00 2.57
3836 4075 3.830755 AGCAAAGCAGGTCTGAAAATGAT 59.169 39.130 1.65 0.00 0.00 2.45
3992 4231 1.607251 GGTGAGGTGGTTTAGGACACG 60.607 57.143 0.00 0.00 38.46 4.49
4027 4266 2.926200 CAGACAGCAGTAAGAACGATGG 59.074 50.000 0.00 0.00 0.00 3.51
4057 4296 2.550855 GGACATGAAGTTCTCTGCACCA 60.551 50.000 0.00 0.00 31.17 4.17
4166 4405 0.250166 AACCGAACCTGAAGAACCGG 60.250 55.000 0.00 0.00 42.30 5.28
4232 4474 2.216898 GCTGTAGCCTGGTTCATGATC 58.783 52.381 0.00 0.00 34.31 2.92
4264 4506 1.079127 GCTCACCGGAAGCTTGCTA 60.079 57.895 21.29 0.00 0.00 3.49
4318 4560 1.228245 GTTTGAGCTGCCTGGTCCA 60.228 57.895 0.00 0.00 42.12 4.02
4402 4644 0.902531 AATGGAAGTGGACCGACGAT 59.097 50.000 0.00 0.00 0.00 3.73
4417 4659 2.503895 AGAAGGTCCTGCTGAAATGG 57.496 50.000 0.00 0.00 0.00 3.16
4457 4702 3.077484 TCAAAGAATGGCAAGGAGGAG 57.923 47.619 0.00 0.00 0.00 3.69
4458 4703 3.624777 GATCAAAGAATGGCAAGGAGGA 58.375 45.455 0.00 0.00 0.00 3.71
4459 4704 2.692041 GGATCAAAGAATGGCAAGGAGG 59.308 50.000 0.00 0.00 0.00 4.30
4550 4797 2.289195 CCAACTCCTACGGCAACTACAA 60.289 50.000 0.00 0.00 0.00 2.41
4551 4798 1.274167 CCAACTCCTACGGCAACTACA 59.726 52.381 0.00 0.00 0.00 2.74
4753 5010 1.522676 CAGCATGCACGAAGTATACGG 59.477 52.381 21.98 0.00 41.61 4.02
4862 5196 1.261354 CATCATGAATACCACGGTGCG 59.739 52.381 0.00 0.00 0.00 5.34
4889 5223 1.663695 ATGAATAAACACGCTCCCCG 58.336 50.000 0.00 0.00 44.21 5.73
5077 6786 3.324993 ACCAAACCTAAATTTGCATGCG 58.675 40.909 14.09 0.00 38.10 4.73
5161 6870 8.601476 GTGTTATTTCTAAGTCGGTAGAATTGG 58.399 37.037 5.39 0.00 39.31 3.16
5332 7042 2.593026 GTTTGGTCTTGTCCATCCCAA 58.407 47.619 0.00 0.00 37.33 4.12
5377 7087 5.299279 ACCATAATTGTTCGTCCATTCCATC 59.701 40.000 0.00 0.00 0.00 3.51
5401 7111 1.486310 CAATCATGGAGAGACCCGGAA 59.514 52.381 0.73 0.00 38.00 4.30
5420 7130 4.158394 GCATTTCTAAAAGTGATGGCTCCA 59.842 41.667 0.00 0.00 0.00 3.86
5421 7131 4.400567 AGCATTTCTAAAAGTGATGGCTCC 59.599 41.667 0.00 0.00 0.00 4.70
5422 7132 5.573337 AGCATTTCTAAAAGTGATGGCTC 57.427 39.130 0.00 0.00 0.00 4.70
5423 7133 5.717119 CAAGCATTTCTAAAAGTGATGGCT 58.283 37.500 0.00 0.00 0.00 4.75
5424 7134 4.328169 GCAAGCATTTCTAAAAGTGATGGC 59.672 41.667 0.00 0.00 31.49 4.40
5425 7135 5.472148 TGCAAGCATTTCTAAAAGTGATGG 58.528 37.500 0.00 0.00 0.00 3.51
5426 7136 6.128742 GGTTGCAAGCATTTCTAAAAGTGATG 60.129 38.462 23.18 0.00 0.00 3.07
5427 7137 5.928264 GGTTGCAAGCATTTCTAAAAGTGAT 59.072 36.000 23.18 0.00 0.00 3.06
5428 7138 5.163468 TGGTTGCAAGCATTTCTAAAAGTGA 60.163 36.000 26.54 0.00 0.00 3.41
5429 7139 5.049167 TGGTTGCAAGCATTTCTAAAAGTG 58.951 37.500 26.54 0.00 0.00 3.16
5430 7140 5.049828 GTGGTTGCAAGCATTTCTAAAAGT 58.950 37.500 31.73 0.00 38.81 2.66
5431 7141 4.448732 GGTGGTTGCAAGCATTTCTAAAAG 59.551 41.667 31.73 0.00 38.81 2.27
5432 7142 4.376146 GGTGGTTGCAAGCATTTCTAAAA 58.624 39.130 31.73 5.02 38.81 1.52
5433 7143 3.244044 GGGTGGTTGCAAGCATTTCTAAA 60.244 43.478 31.73 5.77 38.81 1.85
5434 7144 2.298729 GGGTGGTTGCAAGCATTTCTAA 59.701 45.455 31.73 6.54 38.81 2.10
5435 7145 1.892474 GGGTGGTTGCAAGCATTTCTA 59.108 47.619 31.73 7.30 38.81 2.10
5436 7146 0.681175 GGGTGGTTGCAAGCATTTCT 59.319 50.000 31.73 0.00 38.81 2.52
5437 7147 0.667184 CGGGTGGTTGCAAGCATTTC 60.667 55.000 31.73 22.71 38.81 2.17
5438 7148 1.367102 CGGGTGGTTGCAAGCATTT 59.633 52.632 31.73 0.00 38.81 2.32
5439 7149 3.050339 CGGGTGGTTGCAAGCATT 58.950 55.556 31.73 0.00 38.81 3.56
5440 7150 3.683937 GCGGGTGGTTGCAAGCAT 61.684 61.111 31.73 0.00 38.81 3.79
5443 7153 1.787057 TAAACGCGGGTGGTTGCAAG 61.787 55.000 12.47 0.00 0.00 4.01
5444 7154 1.787057 CTAAACGCGGGTGGTTGCAA 61.787 55.000 12.47 0.00 0.00 4.08
5445 7155 2.203167 TAAACGCGGGTGGTTGCA 60.203 55.556 12.47 0.00 0.00 4.08
5446 7156 1.303091 ATCTAAACGCGGGTGGTTGC 61.303 55.000 12.47 0.00 0.00 4.17
5447 7157 0.446222 CATCTAAACGCGGGTGGTTG 59.554 55.000 12.47 1.11 0.00 3.77
5448 7158 0.322322 TCATCTAAACGCGGGTGGTT 59.678 50.000 12.47 0.00 0.00 3.67
5449 7159 0.322322 TTCATCTAAACGCGGGTGGT 59.678 50.000 12.47 0.00 0.00 4.16
5450 7160 1.663695 ATTCATCTAAACGCGGGTGG 58.336 50.000 12.47 0.00 0.00 4.61
5451 7161 4.331717 AGTTAATTCATCTAAACGCGGGTG 59.668 41.667 12.47 0.00 0.00 4.61
5452 7162 4.331717 CAGTTAATTCATCTAAACGCGGGT 59.668 41.667 12.47 0.00 0.00 5.28
5453 7163 4.785341 GCAGTTAATTCATCTAAACGCGGG 60.785 45.833 12.47 0.00 0.00 6.13
5454 7164 4.034048 AGCAGTTAATTCATCTAAACGCGG 59.966 41.667 12.47 0.00 31.47 6.46
5455 7165 5.143916 AGCAGTTAATTCATCTAAACGCG 57.856 39.130 3.53 3.53 31.47 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.