Multiple sequence alignment - TraesCS5D01G339800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G339800 chr5D 100.000 7005 0 0 1 7005 428590706 428597710 0.000000e+00 12936
1 TraesCS5D01G339800 chr5D 85.381 3899 465 59 1995 5823 428511889 428515752 0.000000e+00 3945
2 TraesCS5D01G339800 chr5D 85.905 3519 447 38 2339 5823 428565559 428569062 0.000000e+00 3705
3 TraesCS5D01G339800 chr5D 85.304 3409 474 23 2401 5803 428670775 428674162 0.000000e+00 3494
4 TraesCS5D01G339800 chr5D 87.143 140 15 3 6663 6801 164604863 164605000 9.410000e-34 156
5 TraesCS5D01G339800 chr5D 84.507 142 19 3 1995 2135 428520418 428520557 3.410000e-28 137
6 TraesCS5D01G339800 chr5B 94.394 5048 178 38 848 5823 517773442 517778456 0.000000e+00 7657
7 TraesCS5D01G339800 chr5B 85.115 3406 490 15 2401 5802 517797833 517801225 0.000000e+00 3465
8 TraesCS5D01G339800 chr5B 83.511 3566 518 46 2303 5823 517694388 517697928 0.000000e+00 3264
9 TraesCS5D01G339800 chr5B 89.051 137 12 3 6666 6801 176588245 176588379 4.350000e-37 167
10 TraesCS5D01G339800 chr5A 98.066 2120 39 1 3672 5791 544246345 544248462 0.000000e+00 3687
11 TraesCS5D01G339800 chr5A 85.376 3337 463 18 2401 5732 544453038 544456354 0.000000e+00 3435
12 TraesCS5D01G339800 chr5A 84.583 3373 472 32 2400 5739 544502482 544505839 0.000000e+00 3304
13 TraesCS5D01G339800 chr5A 95.290 2017 66 14 1690 3679 544243518 544245532 0.000000e+00 3171
14 TraesCS5D01G339800 chr5A 87.789 1728 208 2 4097 5821 544463367 544465094 0.000000e+00 2019
15 TraesCS5D01G339800 chr5A 83.361 1827 270 16 2303 4101 544158548 544160368 0.000000e+00 1659
16 TraesCS5D01G339800 chr5A 83.078 1631 252 17 2401 4016 544461748 544463369 0.000000e+00 1461
17 TraesCS5D01G339800 chr5A 92.672 696 33 2 5786 6481 544251145 544251822 0.000000e+00 987
18 TraesCS5D01G339800 chr5A 86.597 858 64 24 876 1699 544242555 544243395 0.000000e+00 900
19 TraesCS5D01G339800 chr5A 93.802 484 25 3 6523 7005 544253089 544253568 0.000000e+00 723
20 TraesCS5D01G339800 chr5A 83.378 740 60 30 82 790 544208827 544209534 1.660000e-175 627
21 TraesCS5D01G339800 chr5A 87.111 225 26 3 5886 6108 544465101 544465324 1.170000e-62 252
22 TraesCS5D01G339800 chr5A 87.050 139 17 1 6663 6801 246820079 246820216 9.410000e-34 156
23 TraesCS5D01G339800 chr7D 89.130 138 12 3 6664 6800 593035298 593035163 1.210000e-37 169
24 TraesCS5D01G339800 chr7A 87.681 138 13 4 6664 6800 685583848 685583714 2.620000e-34 158
25 TraesCS5D01G339800 chr2D 86.713 143 17 2 6663 6805 241661910 241662050 2.620000e-34 158
26 TraesCS5D01G339800 chr3A 86.957 138 17 1 6664 6801 514492578 514492442 3.380000e-33 154
27 TraesCS5D01G339800 chr3A 86.861 137 17 1 6664 6800 561287652 561287787 1.220000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G339800 chr5D 428590706 428597710 7004 False 12936.0 12936 100.000000 1 7005 1 chr5D.!!$F5 7004
1 TraesCS5D01G339800 chr5D 428511889 428515752 3863 False 3945.0 3945 85.381000 1995 5823 1 chr5D.!!$F2 3828
2 TraesCS5D01G339800 chr5D 428565559 428569062 3503 False 3705.0 3705 85.905000 2339 5823 1 chr5D.!!$F4 3484
3 TraesCS5D01G339800 chr5D 428670775 428674162 3387 False 3494.0 3494 85.304000 2401 5803 1 chr5D.!!$F6 3402
4 TraesCS5D01G339800 chr5B 517773442 517778456 5014 False 7657.0 7657 94.394000 848 5823 1 chr5B.!!$F3 4975
5 TraesCS5D01G339800 chr5B 517797833 517801225 3392 False 3465.0 3465 85.115000 2401 5802 1 chr5B.!!$F4 3401
6 TraesCS5D01G339800 chr5B 517694388 517697928 3540 False 3264.0 3264 83.511000 2303 5823 1 chr5B.!!$F2 3520
7 TraesCS5D01G339800 chr5A 544453038 544456354 3316 False 3435.0 3435 85.376000 2401 5732 1 chr5A.!!$F4 3331
8 TraesCS5D01G339800 chr5A 544502482 544505839 3357 False 3304.0 3304 84.583000 2400 5739 1 chr5A.!!$F5 3339
9 TraesCS5D01G339800 chr5A 544242555 544253568 11013 False 1893.6 3687 93.285400 876 7005 5 chr5A.!!$F6 6129
10 TraesCS5D01G339800 chr5A 544158548 544160368 1820 False 1659.0 1659 83.361000 2303 4101 1 chr5A.!!$F2 1798
11 TraesCS5D01G339800 chr5A 544461748 544465324 3576 False 1244.0 2019 85.992667 2401 6108 3 chr5A.!!$F7 3707
12 TraesCS5D01G339800 chr5A 544208827 544209534 707 False 627.0 627 83.378000 82 790 1 chr5A.!!$F3 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 781 0.895530 CCGGACCACAGTACTCACAT 59.104 55.000 0.00 0.00 0.00 3.21 F
1419 1464 0.466007 TGACGGGATGGGAATGCATG 60.466 55.000 0.00 0.00 0.00 4.06 F
1807 2009 0.179212 TGCACACACAAACGTCAACG 60.179 50.000 0.12 0.12 46.33 4.10 F
1809 2011 1.059681 ACACACAAACGTCAACGCG 59.940 52.632 3.53 3.53 44.43 6.01 F
3016 3309 1.756538 CTTGCAAACCTGACCAACCTT 59.243 47.619 0.00 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1693 1.003233 GACTGCGGCTCCTCCTTTT 60.003 57.895 0.00 0.0 0.00 2.27 R
2630 2923 1.120530 TAAGGGAGCGACTGGAATCC 58.879 55.000 0.00 0.0 0.00 3.01 R
3037 3330 1.348064 TGGGTCCTGACAGACGATTT 58.652 50.000 3.32 0.0 37.66 2.17 R
5050 6178 5.356426 GTTGAAGCTAGATTTCCTCTCTCC 58.644 45.833 0.00 0.0 35.28 3.71 R
6138 9978 0.994995 CGCGAAGGAGTGACAAGATG 59.005 55.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.697045 ACCAAAACTTCAAATCACGTGGA 59.303 39.130 17.00 1.38 0.00 4.02
106 107 2.026262 ACGTGGAATCCTATTTGGTGCT 60.026 45.455 0.00 0.00 37.07 4.40
111 112 5.066505 GTGGAATCCTATTTGGTGCTTACAG 59.933 44.000 0.00 0.00 37.07 2.74
112 113 4.036852 GGAATCCTATTTGGTGCTTACAGC 59.963 45.833 0.00 0.00 44.74 4.40
179 180 1.962807 TCCTTCGTTAAAGACCGACCA 59.037 47.619 0.00 0.00 37.12 4.02
186 187 5.104374 TCGTTAAAGACCGACCAATGTATC 58.896 41.667 0.00 0.00 0.00 2.24
206 207 3.725490 TCGTAGCTTAGCGTGAGATCTA 58.275 45.455 0.00 0.00 0.00 1.98
247 248 2.632537 TGGGGAAGCTTCTAGAACCTT 58.367 47.619 25.05 11.99 0.00 3.50
248 249 2.572104 TGGGGAAGCTTCTAGAACCTTC 59.428 50.000 23.85 23.85 34.08 3.46
249 250 2.092861 GGGGAAGCTTCTAGAACCTTCC 60.093 54.545 33.58 33.58 45.71 3.46
250 251 3.983044 GGAAGCTTCTAGAACCTTCCA 57.017 47.619 34.99 6.33 45.73 3.53
251 252 4.287766 GGAAGCTTCTAGAACCTTCCAA 57.712 45.455 34.99 5.69 45.73 3.53
252 253 4.849518 GGAAGCTTCTAGAACCTTCCAAT 58.150 43.478 34.99 10.47 45.73 3.16
253 254 4.878971 GGAAGCTTCTAGAACCTTCCAATC 59.121 45.833 34.99 19.31 45.73 2.67
254 255 4.495690 AGCTTCTAGAACCTTCCAATCC 57.504 45.455 0.00 0.00 0.00 3.01
255 256 4.107820 AGCTTCTAGAACCTTCCAATCCT 58.892 43.478 0.00 0.00 0.00 3.24
256 257 4.080638 AGCTTCTAGAACCTTCCAATCCTG 60.081 45.833 0.00 0.00 0.00 3.86
257 258 4.080863 GCTTCTAGAACCTTCCAATCCTGA 60.081 45.833 0.00 0.00 0.00 3.86
258 259 5.397334 GCTTCTAGAACCTTCCAATCCTGAT 60.397 44.000 0.00 0.00 0.00 2.90
259 260 6.642733 TTCTAGAACCTTCCAATCCTGATT 57.357 37.500 0.00 0.00 0.00 2.57
260 261 6.642733 TCTAGAACCTTCCAATCCTGATTT 57.357 37.500 0.00 0.00 0.00 2.17
261 262 6.418101 TCTAGAACCTTCCAATCCTGATTTG 58.582 40.000 0.00 0.00 0.00 2.32
262 263 4.347607 AGAACCTTCCAATCCTGATTTGG 58.652 43.478 0.00 0.00 0.00 3.28
263 264 3.105959 ACCTTCCAATCCTGATTTGGG 57.894 47.619 2.84 1.10 0.00 4.12
264 265 2.654385 ACCTTCCAATCCTGATTTGGGA 59.346 45.455 2.84 3.00 37.26 4.37
265 266 3.077391 ACCTTCCAATCCTGATTTGGGAA 59.923 43.478 9.87 9.87 36.37 3.97
266 267 3.703052 CCTTCCAATCCTGATTTGGGAAG 59.297 47.826 21.20 21.20 43.50 3.46
267 268 2.738743 TCCAATCCTGATTTGGGAAGC 58.261 47.619 2.84 0.00 36.37 3.86
268 269 2.312741 TCCAATCCTGATTTGGGAAGCT 59.687 45.455 2.84 0.00 36.37 3.74
269 270 3.102204 CCAATCCTGATTTGGGAAGCTT 58.898 45.455 0.00 0.00 36.37 3.74
270 271 3.516700 CCAATCCTGATTTGGGAAGCTTT 59.483 43.478 0.00 0.00 36.37 3.51
271 272 4.382362 CCAATCCTGATTTGGGAAGCTTTC 60.382 45.833 0.00 0.00 36.37 2.62
272 273 2.436417 TCCTGATTTGGGAAGCTTTCG 58.564 47.619 0.00 0.00 0.00 3.46
273 274 2.039746 TCCTGATTTGGGAAGCTTTCGA 59.960 45.455 0.00 0.00 0.00 3.71
274 275 2.162408 CCTGATTTGGGAAGCTTTCGAC 59.838 50.000 0.00 0.00 0.00 4.20
275 276 2.159382 TGATTTGGGAAGCTTTCGACC 58.841 47.619 0.00 1.84 0.00 4.79
276 277 2.224769 TGATTTGGGAAGCTTTCGACCT 60.225 45.455 0.00 0.00 0.00 3.85
277 278 3.008594 TGATTTGGGAAGCTTTCGACCTA 59.991 43.478 0.00 0.00 0.00 3.08
278 279 3.713826 TTTGGGAAGCTTTCGACCTAT 57.286 42.857 0.00 0.00 0.00 2.57
279 280 3.713826 TTGGGAAGCTTTCGACCTATT 57.286 42.857 0.00 0.00 0.00 1.73
280 281 3.713826 TGGGAAGCTTTCGACCTATTT 57.286 42.857 0.00 0.00 0.00 1.40
281 282 4.028993 TGGGAAGCTTTCGACCTATTTT 57.971 40.909 0.00 0.00 0.00 1.82
282 283 4.403734 TGGGAAGCTTTCGACCTATTTTT 58.596 39.130 0.00 0.00 0.00 1.94
305 306 8.989653 TTTTCCCTTTTGTACTGTTTTAACTG 57.010 30.769 0.00 0.00 0.00 3.16
306 307 6.702716 TCCCTTTTGTACTGTTTTAACTGG 57.297 37.500 0.00 0.00 32.82 4.00
307 308 6.189133 TCCCTTTTGTACTGTTTTAACTGGT 58.811 36.000 0.00 2.12 32.82 4.00
308 309 6.664384 TCCCTTTTGTACTGTTTTAACTGGTT 59.336 34.615 0.00 0.00 32.82 3.67
309 310 7.178805 TCCCTTTTGTACTGTTTTAACTGGTTT 59.821 33.333 0.00 0.00 32.82 3.27
310 311 7.820386 CCCTTTTGTACTGTTTTAACTGGTTTT 59.180 33.333 0.00 0.00 32.82 2.43
311 312 8.652463 CCTTTTGTACTGTTTTAACTGGTTTTG 58.348 33.333 0.00 0.00 32.82 2.44
312 313 9.198837 CTTTTGTACTGTTTTAACTGGTTTTGT 57.801 29.630 0.00 0.00 32.82 2.83
313 314 9.543783 TTTTGTACTGTTTTAACTGGTTTTGTT 57.456 25.926 0.00 0.00 32.82 2.83
314 315 9.543783 TTTGTACTGTTTTAACTGGTTTTGTTT 57.456 25.926 0.00 0.00 32.82 2.83
315 316 8.522178 TGTACTGTTTTAACTGGTTTTGTTTG 57.478 30.769 0.00 0.00 32.82 2.93
316 317 7.599245 TGTACTGTTTTAACTGGTTTTGTTTGG 59.401 33.333 0.00 0.00 32.82 3.28
317 318 6.526526 ACTGTTTTAACTGGTTTTGTTTGGT 58.473 32.000 4.82 0.00 32.82 3.67
318 319 6.993308 ACTGTTTTAACTGGTTTTGTTTGGTT 59.007 30.769 4.82 0.00 32.82 3.67
319 320 7.499563 ACTGTTTTAACTGGTTTTGTTTGGTTT 59.500 29.630 4.82 0.00 32.82 3.27
320 321 8.221965 TGTTTTAACTGGTTTTGTTTGGTTTT 57.778 26.923 0.00 0.00 0.00 2.43
321 322 8.683615 TGTTTTAACTGGTTTTGTTTGGTTTTT 58.316 25.926 0.00 0.00 0.00 1.94
401 402 6.487689 TTTTTGGCAAATTCGTGAACTTTT 57.512 29.167 14.29 0.00 0.00 2.27
402 403 6.487689 TTTTGGCAAATTCGTGAACTTTTT 57.512 29.167 14.29 0.00 0.00 1.94
494 495 9.796120 TGTGAAATTTCTTGAAATTACGAAGTT 57.204 25.926 18.64 4.75 45.11 2.66
499 500 9.810545 AATTTCTTGAAATTACGAAGTTTTCCA 57.189 25.926 16.76 0.00 37.78 3.53
500 501 9.810545 ATTTCTTGAAATTACGAAGTTTTCCAA 57.189 25.926 3.04 0.00 37.78 3.53
501 502 9.810545 TTTCTTGAAATTACGAAGTTTTCCAAT 57.189 25.926 0.00 0.00 37.78 3.16
502 503 9.810545 TTCTTGAAATTACGAAGTTTTCCAATT 57.189 25.926 0.00 0.00 37.78 2.32
503 504 9.458374 TCTTGAAATTACGAAGTTTTCCAATTC 57.542 29.630 0.00 0.00 37.78 2.17
504 505 9.463443 CTTGAAATTACGAAGTTTTCCAATTCT 57.537 29.630 0.00 0.00 37.78 2.40
505 506 9.810545 TTGAAATTACGAAGTTTTCCAATTCTT 57.189 25.926 0.00 0.00 37.78 2.52
506 507 9.243637 TGAAATTACGAAGTTTTCCAATTCTTG 57.756 29.630 0.00 0.00 37.78 3.02
507 508 9.458374 GAAATTACGAAGTTTTCCAATTCTTGA 57.542 29.630 0.00 0.00 37.78 3.02
508 509 9.810545 AAATTACGAAGTTTTCCAATTCTTGAA 57.189 25.926 0.00 0.00 37.78 2.69
509 510 9.981114 AATTACGAAGTTTTCCAATTCTTGAAT 57.019 25.926 0.00 0.00 37.78 2.57
510 511 9.981114 ATTACGAAGTTTTCCAATTCTTGAATT 57.019 25.926 3.04 3.04 37.78 2.17
511 512 9.810545 TTACGAAGTTTTCCAATTCTTGAATTT 57.189 25.926 5.92 0.00 37.78 1.82
512 513 8.716646 ACGAAGTTTTCCAATTCTTGAATTTT 57.283 26.923 5.92 0.00 37.78 1.82
513 514 9.161629 ACGAAGTTTTCCAATTCTTGAATTTTT 57.838 25.926 5.92 0.00 37.78 1.94
545 546 8.850454 TTGAGGAACGATTTTTCTAGTTTTTG 57.150 30.769 0.00 0.00 0.00 2.44
546 547 8.215926 TGAGGAACGATTTTTCTAGTTTTTGA 57.784 30.769 0.00 0.00 0.00 2.69
547 548 8.679100 TGAGGAACGATTTTTCTAGTTTTTGAA 58.321 29.630 0.00 0.00 0.00 2.69
548 549 8.851960 AGGAACGATTTTTCTAGTTTTTGAAC 57.148 30.769 0.00 0.00 0.00 3.18
549 550 8.683615 AGGAACGATTTTTCTAGTTTTTGAACT 58.316 29.630 0.00 0.00 36.82 3.01
550 551 9.297586 GGAACGATTTTTCTAGTTTTTGAACTT 57.702 29.630 0.00 0.00 34.37 2.66
572 573 9.838975 AACTTTTTGTCAAATTTGTGAATTTCC 57.161 25.926 17.47 0.00 42.14 3.13
573 574 8.458052 ACTTTTTGTCAAATTTGTGAATTTCCC 58.542 29.630 17.47 0.00 42.14 3.97
574 575 6.934048 TTTGTCAAATTTGTGAATTTCCCC 57.066 33.333 17.47 0.00 42.14 4.81
575 576 5.620738 TGTCAAATTTGTGAATTTCCCCA 57.379 34.783 17.47 0.00 42.14 4.96
576 577 5.994250 TGTCAAATTTGTGAATTTCCCCAA 58.006 33.333 17.47 0.00 42.14 4.12
577 578 6.418101 TGTCAAATTTGTGAATTTCCCCAAA 58.582 32.000 17.47 11.45 42.14 3.28
578 579 7.059156 TGTCAAATTTGTGAATTTCCCCAAAT 58.941 30.769 17.47 13.93 42.14 2.32
579 580 7.559170 TGTCAAATTTGTGAATTTCCCCAAATT 59.441 29.630 17.47 20.24 44.83 1.82
581 582 8.975295 TCAAATTTGTGAATTTCCCCAAATTTT 58.025 25.926 26.77 18.06 46.91 1.82
585 586 9.804977 ATTTGTGAATTTCCCCAAATTTTATGA 57.195 25.926 13.93 0.00 41.47 2.15
586 587 8.614469 TTGTGAATTTCCCCAAATTTTATGAC 57.386 30.769 0.00 0.00 41.47 3.06
587 588 7.739825 TGTGAATTTCCCCAAATTTTATGACA 58.260 30.769 0.00 0.00 41.47 3.58
588 589 8.381636 TGTGAATTTCCCCAAATTTTATGACAT 58.618 29.630 0.00 0.00 41.47 3.06
589 590 9.230122 GTGAATTTCCCCAAATTTTATGACATT 57.770 29.630 0.00 0.00 41.47 2.71
590 591 9.804977 TGAATTTCCCCAAATTTTATGACATTT 57.195 25.926 0.00 0.00 41.47 2.32
594 595 9.859152 TTTCCCCAAATTTTATGACATTTTTCT 57.141 25.926 0.00 0.00 0.00 2.52
608 609 9.965824 ATGACATTTTTCTATTCGTGAACTTTT 57.034 25.926 0.00 0.00 0.00 2.27
609 610 9.796120 TGACATTTTTCTATTCGTGAACTTTTT 57.204 25.926 0.00 0.00 0.00 1.94
659 660 8.614469 TTTTTGAACCTTTTTCAAACTCACAT 57.386 26.923 10.86 0.00 44.94 3.21
660 661 8.614469 TTTTGAACCTTTTTCAAACTCACATT 57.386 26.923 10.86 0.00 44.94 2.71
661 662 8.614469 TTTGAACCTTTTTCAAACTCACATTT 57.386 26.923 7.86 0.00 41.74 2.32
662 663 8.614469 TTGAACCTTTTTCAAACTCACATTTT 57.386 26.923 0.00 0.00 35.69 1.82
663 664 8.614469 TGAACCTTTTTCAAACTCACATTTTT 57.386 26.923 0.00 0.00 0.00 1.94
685 686 8.563123 TTTTTCCGTTTTCCCATTTTTAAACT 57.437 26.923 0.00 0.00 0.00 2.66
686 687 8.563123 TTTTCCGTTTTCCCATTTTTAAACTT 57.437 26.923 0.00 0.00 0.00 2.66
687 688 8.563123 TTTCCGTTTTCCCATTTTTAAACTTT 57.437 26.923 0.00 0.00 0.00 2.66
688 689 8.563123 TTCCGTTTTCCCATTTTTAAACTTTT 57.437 26.923 0.00 0.00 0.00 2.27
689 690 8.563123 TCCGTTTTCCCATTTTTAAACTTTTT 57.437 26.923 0.00 0.00 0.00 1.94
690 691 8.666573 TCCGTTTTCCCATTTTTAAACTTTTTC 58.333 29.630 0.00 0.00 0.00 2.29
691 692 8.451748 CCGTTTTCCCATTTTTAAACTTTTTCA 58.548 29.630 0.00 0.00 0.00 2.69
692 693 9.827411 CGTTTTCCCATTTTTAAACTTTTTCAA 57.173 25.926 0.00 0.00 0.00 2.69
709 710 8.935844 ACTTTTTCAAAGAATCAAAAGTCAACC 58.064 29.630 3.24 0.00 42.96 3.77
710 711 7.518731 TTTTCAAAGAATCAAAAGTCAACCG 57.481 32.000 0.00 0.00 0.00 4.44
711 712 5.181690 TCAAAGAATCAAAAGTCAACCGG 57.818 39.130 0.00 0.00 0.00 5.28
712 713 4.642885 TCAAAGAATCAAAAGTCAACCGGT 59.357 37.500 0.00 0.00 0.00 5.28
713 714 4.830826 AAGAATCAAAAGTCAACCGGTC 57.169 40.909 8.04 0.00 0.00 4.79
714 715 3.815809 AGAATCAAAAGTCAACCGGTCA 58.184 40.909 8.04 0.00 0.00 4.02
715 716 4.204012 AGAATCAAAAGTCAACCGGTCAA 58.796 39.130 8.04 0.00 0.00 3.18
716 717 3.982576 ATCAAAAGTCAACCGGTCAAC 57.017 42.857 8.04 9.63 0.00 3.18
717 718 2.993937 TCAAAAGTCAACCGGTCAACT 58.006 42.857 8.04 12.13 0.00 3.16
718 719 2.680841 TCAAAAGTCAACCGGTCAACTG 59.319 45.455 19.32 9.82 0.00 3.16
729 730 4.419522 CCGGTCAACTGGTCATTTTTAG 57.580 45.455 0.00 0.00 37.62 1.85
730 731 3.190535 CCGGTCAACTGGTCATTTTTAGG 59.809 47.826 0.00 0.00 37.62 2.69
731 732 4.069304 CGGTCAACTGGTCATTTTTAGGA 58.931 43.478 0.00 0.00 0.00 2.94
732 733 4.517453 CGGTCAACTGGTCATTTTTAGGAA 59.483 41.667 0.00 0.00 0.00 3.36
733 734 5.009210 CGGTCAACTGGTCATTTTTAGGAAA 59.991 40.000 0.00 0.00 0.00 3.13
734 735 6.460399 CGGTCAACTGGTCATTTTTAGGAAAA 60.460 38.462 0.00 0.00 38.96 2.29
735 736 7.269316 GGTCAACTGGTCATTTTTAGGAAAAA 58.731 34.615 0.00 0.00 43.76 1.94
749 750 3.257933 AAAAAGGCGAGCGAGCTG 58.742 55.556 0.84 0.00 37.29 4.24
750 751 2.328099 AAAAAGGCGAGCGAGCTGG 61.328 57.895 0.84 1.87 37.29 4.85
751 752 4.767255 AAAGGCGAGCGAGCTGGG 62.767 66.667 0.84 0.00 37.29 4.45
755 756 4.577246 GCGAGCGAGCTGGGGTAG 62.577 72.222 0.84 0.00 0.00 3.18
756 757 3.141488 CGAGCGAGCTGGGGTAGT 61.141 66.667 0.84 0.00 0.00 2.73
757 758 2.711922 CGAGCGAGCTGGGGTAGTT 61.712 63.158 0.84 0.00 0.00 2.24
758 759 1.153549 GAGCGAGCTGGGGTAGTTG 60.154 63.158 0.84 0.00 0.00 3.16
759 760 2.125106 GCGAGCTGGGGTAGTTGG 60.125 66.667 0.00 0.00 0.00 3.77
760 761 2.584608 CGAGCTGGGGTAGTTGGG 59.415 66.667 0.00 0.00 0.00 4.12
761 762 2.272471 GAGCTGGGGTAGTTGGGC 59.728 66.667 0.00 0.00 0.00 5.36
762 763 3.339093 AGCTGGGGTAGTTGGGCC 61.339 66.667 0.00 0.00 0.00 5.80
763 764 4.796495 GCTGGGGTAGTTGGGCCG 62.796 72.222 0.00 0.00 0.00 6.13
764 765 4.109675 CTGGGGTAGTTGGGCCGG 62.110 72.222 0.00 0.00 0.00 6.13
765 766 4.660611 TGGGGTAGTTGGGCCGGA 62.661 66.667 5.05 0.00 0.00 5.14
766 767 4.105553 GGGGTAGTTGGGCCGGAC 62.106 72.222 5.05 0.00 0.00 4.79
767 768 4.105553 GGGTAGTTGGGCCGGACC 62.106 72.222 23.70 23.70 37.93 4.46
768 769 3.324108 GGTAGTTGGGCCGGACCA 61.324 66.667 30.39 30.39 42.05 4.02
769 770 2.046604 GTAGTTGGGCCGGACCAC 60.047 66.667 34.54 24.64 41.03 4.16
770 771 2.527123 TAGTTGGGCCGGACCACA 60.527 61.111 34.54 18.68 41.03 4.17
771 772 2.589157 TAGTTGGGCCGGACCACAG 61.589 63.158 34.54 0.00 41.03 3.66
772 773 4.265056 GTTGGGCCGGACCACAGT 62.265 66.667 34.54 0.00 41.03 3.55
773 774 2.527123 TTGGGCCGGACCACAGTA 60.527 61.111 34.54 12.91 41.03 2.74
774 775 2.886134 TTGGGCCGGACCACAGTAC 61.886 63.158 34.54 0.00 41.03 2.73
775 776 3.001406 GGGCCGGACCACAGTACT 61.001 66.667 25.88 0.00 42.05 2.73
776 777 2.577593 GGCCGGACCACAGTACTC 59.422 66.667 5.05 0.00 38.86 2.59
777 778 2.280552 GGCCGGACCACAGTACTCA 61.281 63.158 5.05 0.00 38.86 3.41
778 779 1.080025 GCCGGACCACAGTACTCAC 60.080 63.158 5.05 0.00 0.00 3.51
779 780 1.812686 GCCGGACCACAGTACTCACA 61.813 60.000 5.05 0.00 0.00 3.58
780 781 0.895530 CCGGACCACAGTACTCACAT 59.104 55.000 0.00 0.00 0.00 3.21
781 782 1.275291 CCGGACCACAGTACTCACATT 59.725 52.381 0.00 0.00 0.00 2.71
782 783 2.289444 CCGGACCACAGTACTCACATTT 60.289 50.000 0.00 0.00 0.00 2.32
783 784 3.399330 CGGACCACAGTACTCACATTTT 58.601 45.455 0.00 0.00 0.00 1.82
784 785 3.813166 CGGACCACAGTACTCACATTTTT 59.187 43.478 0.00 0.00 0.00 1.94
824 825 9.881529 GTCTATATTAGAGTCTGTAAAAGGTCG 57.118 37.037 1.86 0.00 35.04 4.79
825 826 9.624373 TCTATATTAGAGTCTGTAAAAGGTCGT 57.376 33.333 1.86 0.00 0.00 4.34
830 831 9.939802 ATTAGAGTCTGTAAAAGGTCGTTTATT 57.060 29.630 1.86 0.00 0.00 1.40
831 832 9.768662 TTAGAGTCTGTAAAAGGTCGTTTATTT 57.231 29.630 1.86 0.00 0.00 1.40
833 834 9.420551 AGAGTCTGTAAAAGGTCGTTTATTTAG 57.579 33.333 0.00 0.00 0.00 1.85
834 835 8.543862 AGTCTGTAAAAGGTCGTTTATTTAGG 57.456 34.615 0.00 0.00 0.00 2.69
835 836 8.370182 AGTCTGTAAAAGGTCGTTTATTTAGGA 58.630 33.333 0.00 0.00 0.00 2.94
836 837 8.654215 GTCTGTAAAAGGTCGTTTATTTAGGAG 58.346 37.037 0.00 0.00 0.00 3.69
837 838 7.820872 TCTGTAAAAGGTCGTTTATTTAGGAGG 59.179 37.037 0.00 0.00 0.00 4.30
838 839 7.678837 TGTAAAAGGTCGTTTATTTAGGAGGA 58.321 34.615 0.00 0.00 0.00 3.71
839 840 8.156165 TGTAAAAGGTCGTTTATTTAGGAGGAA 58.844 33.333 0.00 0.00 0.00 3.36
840 841 7.444629 AAAAGGTCGTTTATTTAGGAGGAAC 57.555 36.000 0.00 0.00 0.00 3.62
841 842 4.752146 AGGTCGTTTATTTAGGAGGAACG 58.248 43.478 0.00 0.00 43.01 3.95
842 843 3.867493 GGTCGTTTATTTAGGAGGAACGG 59.133 47.826 7.02 0.00 42.22 4.44
843 844 4.498241 GTCGTTTATTTAGGAGGAACGGT 58.502 43.478 7.02 0.00 42.22 4.83
844 845 4.328169 GTCGTTTATTTAGGAGGAACGGTG 59.672 45.833 7.02 0.00 42.22 4.94
845 846 3.619929 CGTTTATTTAGGAGGAACGGTGG 59.380 47.826 0.00 0.00 39.33 4.61
846 847 4.621274 CGTTTATTTAGGAGGAACGGTGGA 60.621 45.833 0.00 0.00 39.33 4.02
851 852 2.019807 AGGAGGAACGGTGGAAGTAA 57.980 50.000 0.00 0.00 0.00 2.24
860 861 7.428020 AGGAACGGTGGAAGTAAAAATAAAAC 58.572 34.615 0.00 0.00 0.00 2.43
861 862 7.068470 AGGAACGGTGGAAGTAAAAATAAAACA 59.932 33.333 0.00 0.00 0.00 2.83
864 865 6.153756 CGGTGGAAGTAAAAATAAAACAGGG 58.846 40.000 0.00 0.00 0.00 4.45
865 866 5.929992 GGTGGAAGTAAAAATAAAACAGGGC 59.070 40.000 0.00 0.00 0.00 5.19
868 870 7.496263 GTGGAAGTAAAAATAAAACAGGGCAAA 59.504 33.333 0.00 0.00 0.00 3.68
922 924 1.899534 TGGGCCAACCGCAGTTAAC 60.900 57.895 2.13 0.00 44.64 2.01
929 931 2.344500 CCGCAGTTAACCGGGTCA 59.656 61.111 6.32 0.00 40.79 4.02
930 932 2.030958 CCGCAGTTAACCGGGTCAC 61.031 63.158 6.32 0.00 40.79 3.67
990 1004 4.052229 CCTGTCGCCGTCCGTCTT 62.052 66.667 0.00 0.00 38.35 3.01
991 1005 2.805353 CTGTCGCCGTCCGTCTTG 60.805 66.667 0.00 0.00 38.35 3.02
992 1006 4.351938 TGTCGCCGTCCGTCTTGG 62.352 66.667 0.00 0.00 38.35 3.61
1099 1119 3.172099 TAGGCGTCGCGATGGTACG 62.172 63.158 28.25 20.26 39.55 3.67
1133 1153 4.658786 AGTGGGAGAAGGGGGCGT 62.659 66.667 0.00 0.00 0.00 5.68
1199 1219 0.741915 GCTAGGTGGTCTTCTCCTCG 59.258 60.000 0.00 0.00 33.34 4.63
1270 1304 6.773976 TCATGGTGAGTCTTTTCAGTTTTT 57.226 33.333 0.00 0.00 0.00 1.94
1294 1328 8.463930 TTCTTAATGAATTTTCAGTGGTCAGT 57.536 30.769 3.68 0.00 41.08 3.41
1296 1330 7.502226 TCTTAATGAATTTTCAGTGGTCAGTGT 59.498 33.333 3.68 0.00 41.08 3.55
1419 1464 0.466007 TGACGGGATGGGAATGCATG 60.466 55.000 0.00 0.00 0.00 4.06
1436 1481 6.594788 ATGCATGGAGTTCTAACAAAACAT 57.405 33.333 0.00 0.00 0.00 2.71
1484 1538 4.340617 TGTAGGTTCCCACAAATCAATCC 58.659 43.478 0.00 0.00 0.00 3.01
1562 1620 0.733150 GCTGTTACTTCGAATGGGGC 59.267 55.000 0.00 0.00 0.00 5.80
1579 1637 1.439644 GCTGCTTACTCTCTCCCCG 59.560 63.158 0.00 0.00 0.00 5.73
1648 1709 0.606401 TGAAAAAGGAGGAGCCGCAG 60.606 55.000 0.00 0.00 43.43 5.18
1654 1715 2.125753 GAGGAGCCGCAGTCACTG 60.126 66.667 0.00 0.00 34.12 3.66
1787 1989 4.151335 GCTAGCGGTTGAAGATATGTCATG 59.849 45.833 0.00 0.00 0.00 3.07
1807 2009 0.179212 TGCACACACAAACGTCAACG 60.179 50.000 0.12 0.12 46.33 4.10
1809 2011 1.059681 ACACACAAACGTCAACGCG 59.940 52.632 3.53 3.53 44.43 6.01
1834 2036 4.688879 TCCATGTCGAATACAGTCAACAAC 59.311 41.667 0.00 0.00 42.70 3.32
1976 2178 7.094205 ACAATGATCTGAAACCGAAAAGCTTAT 60.094 33.333 0.00 0.00 0.00 1.73
1978 2180 8.682936 ATGATCTGAAACCGAAAAGCTTATAT 57.317 30.769 0.00 0.00 0.00 0.86
2194 2416 4.586841 AGGTGCGCTTATTCTCTCTATCTT 59.413 41.667 9.73 0.00 0.00 2.40
2254 2483 2.300437 AGACTTGTGGGACTACTTCAGC 59.700 50.000 0.00 0.00 0.00 4.26
2298 2530 5.769367 TGCAGTCATATTCATAGTACGTCC 58.231 41.667 0.00 0.00 0.00 4.79
2630 2923 1.966451 GGGCGACTGGACAAACTGG 60.966 63.158 0.00 0.00 0.00 4.00
2890 3183 6.410243 AGACTTGCTTTTCTTTATCTACGC 57.590 37.500 0.00 0.00 0.00 4.42
3016 3309 1.756538 CTTGCAAACCTGACCAACCTT 59.243 47.619 0.00 0.00 0.00 3.50
3037 3330 5.046304 CCTTGACTATCTGGACCTTTCTGAA 60.046 44.000 0.00 0.00 0.00 3.02
4246 5362 4.507756 GGAAATTGTTTGAAACTGCAGTCC 59.492 41.667 21.95 15.52 0.00 3.85
5050 6178 3.305335 GGTTCCTTGTGTGCCAGTTTATG 60.305 47.826 0.00 0.00 0.00 1.90
5087 6215 8.324163 TCTAGCTTCAACCTTAAGAAATGAAC 57.676 34.615 3.36 6.67 0.00 3.18
5685 6823 0.178964 TCACCCAAGGAAAGGCCAAG 60.179 55.000 5.01 0.00 40.02 3.61
5853 9692 7.659652 GTGTAACTTCATCTTGAACTTAGCT 57.340 36.000 0.00 0.00 32.21 3.32
5854 9693 7.513968 GTGTAACTTCATCTTGAACTTAGCTG 58.486 38.462 0.00 0.00 32.21 4.24
5856 9695 6.793492 AACTTCATCTTGAACTTAGCTGTC 57.207 37.500 0.00 0.00 32.21 3.51
5863 9702 8.293157 TCATCTTGAACTTAGCTGTCGATATAG 58.707 37.037 0.00 0.00 0.00 1.31
5867 9706 7.569639 TGAACTTAGCTGTCGATATAGAGTT 57.430 36.000 0.00 0.00 0.00 3.01
5877 9716 7.059716 GCTGTCGATATAGAGTTTAACATCGTC 59.940 40.741 12.23 8.83 37.24 4.20
5893 9732 3.660501 TCGTCACCCATATATGTCTGC 57.339 47.619 11.73 2.86 0.00 4.26
5896 9735 3.005791 CGTCACCCATATATGTCTGCTGA 59.994 47.826 11.73 2.38 0.00 4.26
5899 9738 2.028658 ACCCATATATGTCTGCTGAGCG 60.029 50.000 11.73 0.00 0.00 5.03
5902 9741 2.688364 TATATGTCTGCTGAGCGTCG 57.312 50.000 0.00 0.00 0.00 5.12
5905 9744 0.099613 ATGTCTGCTGAGCGTCGTAG 59.900 55.000 0.00 0.00 0.00 3.51
5909 9748 2.031807 GTCTGCTGAGCGTCGTAGAATA 59.968 50.000 0.00 0.00 39.69 1.75
5910 9749 2.879026 TCTGCTGAGCGTCGTAGAATAT 59.121 45.455 0.00 0.00 39.69 1.28
5919 9758 4.705507 AGCGTCGTAGAATATATGGGTCAT 59.294 41.667 0.00 0.00 39.69 3.06
6100 9940 1.299316 CGCGGGCATAAAGGCATTG 60.299 57.895 0.00 0.00 46.44 2.82
6147 9987 0.247460 CGAGCTCCACCATCTTGTCA 59.753 55.000 8.47 0.00 0.00 3.58
6202 10042 2.791560 CTGAATGTCCGACAGATAAGCG 59.208 50.000 7.41 0.00 34.07 4.68
6313 10153 2.253452 GCACTGTGCGCTCTTTGG 59.747 61.111 17.93 0.05 31.71 3.28
6333 10173 1.620822 GGCAGTCCAGGTTCAACAAT 58.379 50.000 0.00 0.00 0.00 2.71
6400 10240 1.654105 CAGCGGACGTCACTTGATAAC 59.346 52.381 18.91 0.00 0.00 1.89
6408 10248 5.175856 GGACGTCACTTGATAACAGATATGC 59.824 44.000 18.91 0.00 0.00 3.14
6434 10274 4.008330 TCCCTCTACTTGAACTGTACTCG 58.992 47.826 0.00 0.00 0.00 4.18
6449 10289 2.795175 ACTCGTCGTGTTCAACATCT 57.205 45.000 0.00 0.00 0.00 2.90
6481 10321 3.090790 AGACATGGCAATTGCACATACA 58.909 40.909 30.32 19.07 44.36 2.29
6482 10322 3.510753 AGACATGGCAATTGCACATACAA 59.489 39.130 30.32 8.07 44.36 2.41
6483 10323 4.021280 AGACATGGCAATTGCACATACAAA 60.021 37.500 30.32 6.74 44.36 2.83
6484 10324 3.995705 ACATGGCAATTGCACATACAAAC 59.004 39.130 30.32 11.20 44.36 2.93
6486 10326 4.268797 TGGCAATTGCACATACAAACAT 57.731 36.364 30.32 0.00 44.36 2.71
6487 10327 4.244066 TGGCAATTGCACATACAAACATC 58.756 39.130 30.32 9.80 44.36 3.06
6488 10328 4.244066 GGCAATTGCACATACAAACATCA 58.756 39.130 30.32 0.00 44.36 3.07
6489 10329 4.689812 GGCAATTGCACATACAAACATCAA 59.310 37.500 30.32 0.00 44.36 2.57
6490 10330 5.389725 GGCAATTGCACATACAAACATCAAC 60.390 40.000 30.32 4.32 44.36 3.18
6491 10331 5.665943 GCAATTGCACATACAAACATCAACG 60.666 40.000 25.36 0.00 41.59 4.10
6492 10332 4.560136 TTGCACATACAAACATCAACGT 57.440 36.364 0.00 0.00 0.00 3.99
6493 10333 4.560136 TGCACATACAAACATCAACGTT 57.440 36.364 0.00 0.00 0.00 3.99
6494 10334 4.286101 TGCACATACAAACATCAACGTTG 58.714 39.130 22.35 22.35 0.00 4.10
6496 10336 4.378616 GCACATACAAACATCAACGTTGTC 59.621 41.667 26.47 0.00 0.00 3.18
6497 10337 4.909305 CACATACAAACATCAACGTTGTCC 59.091 41.667 26.47 0.00 0.00 4.02
6498 10338 4.576873 ACATACAAACATCAACGTTGTCCA 59.423 37.500 26.47 9.39 0.00 4.02
6499 10339 5.240623 ACATACAAACATCAACGTTGTCCAT 59.759 36.000 26.47 11.37 0.00 3.41
6502 10342 0.881118 ACATCAACGTTGTCCATGCC 59.119 50.000 26.47 0.00 0.00 4.40
6504 10344 0.251121 ATCAACGTTGTCCATGCCCA 60.251 50.000 26.47 5.60 0.00 5.36
6508 10348 1.459450 ACGTTGTCCATGCCCAATAC 58.541 50.000 0.00 0.00 0.00 1.89
6509 10349 1.271652 ACGTTGTCCATGCCCAATACA 60.272 47.619 0.00 0.00 0.00 2.29
6510 10350 2.023673 CGTTGTCCATGCCCAATACAT 58.976 47.619 0.00 0.00 0.00 2.29
6511 10351 3.210227 CGTTGTCCATGCCCAATACATA 58.790 45.455 0.00 0.00 0.00 2.29
6512 10352 3.003275 CGTTGTCCATGCCCAATACATAC 59.997 47.826 0.00 0.00 0.00 2.39
6513 10353 3.941704 TGTCCATGCCCAATACATACA 57.058 42.857 0.00 0.00 0.00 2.29
6515 10355 5.574970 TGTCCATGCCCAATACATACATA 57.425 39.130 0.00 0.00 0.00 2.29
6516 10356 5.312895 TGTCCATGCCCAATACATACATAC 58.687 41.667 0.00 0.00 0.00 2.39
6518 10358 5.945784 GTCCATGCCCAATACATACATACAT 59.054 40.000 0.00 0.00 0.00 2.29
6519 10359 7.109501 GTCCATGCCCAATACATACATACATA 58.890 38.462 0.00 0.00 0.00 2.29
6520 10360 7.065803 GTCCATGCCCAATACATACATACATAC 59.934 40.741 0.00 0.00 0.00 2.39
6525 11590 7.941790 TGCCCAATACATACATACATACATTGT 59.058 33.333 0.00 0.00 42.62 2.71
6535 11600 6.851609 ACATACATACATTGTCGCATTTTGT 58.148 32.000 0.00 0.00 39.87 2.83
6567 11632 6.597562 TGCCTACTTTCTTTACCTCAAGAAA 58.402 36.000 8.05 8.05 46.11 2.52
6587 11652 5.471456 AGAAAGACCAACTATGCTGAAAGTG 59.529 40.000 0.00 0.00 35.30 3.16
6605 11670 8.044060 TGAAAGTGTATTGACATCTTTCCATC 57.956 34.615 19.10 6.70 43.69 3.51
6618 11683 7.170965 ACATCTTTCCATCTGAAGTTACATGT 58.829 34.615 2.69 2.69 33.63 3.21
6659 11724 3.003480 CACCTTAGCTGTTACTGCCTTC 58.997 50.000 10.52 0.00 0.00 3.46
6660 11725 2.027100 ACCTTAGCTGTTACTGCCTTCC 60.027 50.000 10.52 0.00 0.00 3.46
6661 11726 2.271800 CTTAGCTGTTACTGCCTTCCG 58.728 52.381 10.52 0.00 0.00 4.30
6662 11727 1.552578 TAGCTGTTACTGCCTTCCGA 58.447 50.000 10.52 0.00 0.00 4.55
6665 11730 2.084546 GCTGTTACTGCCTTCCGAATT 58.915 47.619 2.72 0.00 0.00 2.17
6667 11732 3.877508 GCTGTTACTGCCTTCCGAATTAT 59.122 43.478 2.72 0.00 0.00 1.28
6668 11733 5.054477 GCTGTTACTGCCTTCCGAATTATA 58.946 41.667 2.72 0.00 0.00 0.98
6669 11734 5.526111 GCTGTTACTGCCTTCCGAATTATAA 59.474 40.000 2.72 0.00 0.00 0.98
6670 11735 6.204882 GCTGTTACTGCCTTCCGAATTATAAT 59.795 38.462 2.72 0.00 0.00 1.28
6671 11736 7.386848 GCTGTTACTGCCTTCCGAATTATAATA 59.613 37.037 2.72 0.00 0.00 0.98
6679 11744 9.126151 TGCCTTCCGAATTATAATATGTTTTGA 57.874 29.630 0.00 0.00 0.00 2.69
6717 11782 8.939201 AGAGTACATACAGATTGAAATGAGTG 57.061 34.615 0.00 0.00 0.00 3.51
6721 11786 7.984422 ACATACAGATTGAAATGAGTGAACA 57.016 32.000 0.00 0.00 0.00 3.18
6737 11802 4.026407 GTGAACAAAACACACTAAGACGC 58.974 43.478 0.00 0.00 38.05 5.19
6738 11803 3.242155 TGAACAAAACACACTAAGACGCG 60.242 43.478 3.53 3.53 0.00 6.01
6755 11820 5.881447 AGACGCGTCTATATACATCCAATC 58.119 41.667 38.67 7.28 38.35 2.67
6808 11873 7.981142 AGTTAACAGAGGGAGTACCAAATAAA 58.019 34.615 8.61 0.00 43.89 1.40
6810 11875 9.239551 GTTAACAGAGGGAGTACCAAATAAATT 57.760 33.333 0.00 0.00 43.89 1.82
6866 11931 7.915293 TGGGTCACAATTTTACACTGTATAG 57.085 36.000 0.00 0.00 0.00 1.31
6927 11992 9.044150 GCTCATGATGATATATTCTAAAGAGGC 57.956 37.037 0.00 0.00 0.00 4.70
6983 12049 4.616953 GCTATCTGCACTTCTCTTACCTC 58.383 47.826 0.00 0.00 42.31 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.803315 GATTTGAAGTTTTGGTTAAAGAGAGTT 57.197 29.630 0.00 0.00 0.00 3.01
59 60 8.966868 TGATTTGAAGTTTTGGTTAAAGAGAGT 58.033 29.630 0.00 0.00 0.00 3.24
60 61 9.237846 GTGATTTGAAGTTTTGGTTAAAGAGAG 57.762 33.333 0.00 0.00 0.00 3.20
61 62 7.913297 CGTGATTTGAAGTTTTGGTTAAAGAGA 59.087 33.333 0.00 0.00 0.00 3.10
62 63 7.700656 ACGTGATTTGAAGTTTTGGTTAAAGAG 59.299 33.333 0.00 0.00 0.00 2.85
63 64 7.486551 CACGTGATTTGAAGTTTTGGTTAAAGA 59.513 33.333 10.90 0.00 0.00 2.52
64 65 7.253950 CCACGTGATTTGAAGTTTTGGTTAAAG 60.254 37.037 19.30 0.00 0.00 1.85
65 66 6.531948 CCACGTGATTTGAAGTTTTGGTTAAA 59.468 34.615 19.30 0.00 0.00 1.52
66 67 6.037098 CCACGTGATTTGAAGTTTTGGTTAA 58.963 36.000 19.30 0.00 0.00 2.01
67 68 5.357314 TCCACGTGATTTGAAGTTTTGGTTA 59.643 36.000 19.30 0.00 0.00 2.85
68 69 4.158764 TCCACGTGATTTGAAGTTTTGGTT 59.841 37.500 19.30 0.00 0.00 3.67
69 70 3.697045 TCCACGTGATTTGAAGTTTTGGT 59.303 39.130 19.30 0.00 0.00 3.67
70 71 4.300189 TCCACGTGATTTGAAGTTTTGG 57.700 40.909 19.30 0.00 0.00 3.28
71 72 5.402270 GGATTCCACGTGATTTGAAGTTTTG 59.598 40.000 19.30 0.00 0.00 2.44
72 73 5.301805 AGGATTCCACGTGATTTGAAGTTTT 59.698 36.000 19.30 0.00 0.00 2.43
73 74 4.827284 AGGATTCCACGTGATTTGAAGTTT 59.173 37.500 19.30 0.00 0.00 2.66
74 75 4.398319 AGGATTCCACGTGATTTGAAGTT 58.602 39.130 19.30 0.00 0.00 2.66
75 76 4.021102 AGGATTCCACGTGATTTGAAGT 57.979 40.909 19.30 2.51 0.00 3.01
76 77 6.683974 AATAGGATTCCACGTGATTTGAAG 57.316 37.500 19.30 0.00 0.00 3.02
77 78 6.127758 CCAAATAGGATTCCACGTGATTTGAA 60.128 38.462 25.85 18.11 41.22 2.69
78 79 5.356751 CCAAATAGGATTCCACGTGATTTGA 59.643 40.000 25.85 11.73 41.22 2.69
79 80 5.125417 ACCAAATAGGATTCCACGTGATTTG 59.875 40.000 19.30 20.38 41.22 2.32
80 81 5.125417 CACCAAATAGGATTCCACGTGATTT 59.875 40.000 19.30 10.09 41.22 2.17
106 107 6.443934 AACACATTATATTTGGCGCTGTAA 57.556 33.333 7.64 0.00 0.00 2.41
116 117 9.458374 GCGCTAAATACCAAACACATTATATTT 57.542 29.630 0.00 0.00 31.46 1.40
117 118 8.625651 TGCGCTAAATACCAAACACATTATATT 58.374 29.630 9.73 0.00 0.00 1.28
118 119 8.073768 GTGCGCTAAATACCAAACACATTATAT 58.926 33.333 9.73 0.00 0.00 0.86
119 120 7.065923 TGTGCGCTAAATACCAAACACATTATA 59.934 33.333 9.73 0.00 32.27 0.98
120 121 6.127869 TGTGCGCTAAATACCAAACACATTAT 60.128 34.615 9.73 0.00 32.27 1.28
121 122 5.181433 TGTGCGCTAAATACCAAACACATTA 59.819 36.000 9.73 0.00 32.27 1.90
122 123 4.022762 TGTGCGCTAAATACCAAACACATT 60.023 37.500 9.73 0.00 32.27 2.71
179 180 4.275196 TCTCACGCTAAGCTACGATACATT 59.725 41.667 10.29 0.00 0.00 2.71
186 187 3.495377 ACTAGATCTCACGCTAAGCTACG 59.505 47.826 0.00 2.51 0.00 3.51
206 207 4.522022 CCAAATCAGAAGGAGCTTTCAACT 59.478 41.667 1.17 0.00 0.00 3.16
247 248 2.312741 AGCTTCCCAAATCAGGATTGGA 59.687 45.455 6.86 5.07 32.10 3.53
248 249 2.743553 AGCTTCCCAAATCAGGATTGG 58.256 47.619 0.00 0.00 32.10 3.16
249 250 4.676196 CGAAAGCTTCCCAAATCAGGATTG 60.676 45.833 0.00 0.00 32.10 2.67
250 251 3.445096 CGAAAGCTTCCCAAATCAGGATT 59.555 43.478 0.00 0.00 32.10 3.01
251 252 3.019564 CGAAAGCTTCCCAAATCAGGAT 58.980 45.455 0.00 0.00 32.10 3.24
252 253 2.039746 TCGAAAGCTTCCCAAATCAGGA 59.960 45.455 0.00 0.00 0.00 3.86
253 254 2.162408 GTCGAAAGCTTCCCAAATCAGG 59.838 50.000 0.00 0.00 0.00 3.86
254 255 2.162408 GGTCGAAAGCTTCCCAAATCAG 59.838 50.000 0.00 0.00 0.00 2.90
255 256 2.159382 GGTCGAAAGCTTCCCAAATCA 58.841 47.619 0.00 0.00 0.00 2.57
256 257 2.437413 AGGTCGAAAGCTTCCCAAATC 58.563 47.619 0.00 0.00 0.00 2.17
257 258 2.586648 AGGTCGAAAGCTTCCCAAAT 57.413 45.000 0.00 0.00 0.00 2.32
258 259 3.713826 ATAGGTCGAAAGCTTCCCAAA 57.286 42.857 0.00 0.00 34.40 3.28
259 260 3.713826 AATAGGTCGAAAGCTTCCCAA 57.286 42.857 0.00 0.00 34.40 4.12
260 261 3.713826 AAATAGGTCGAAAGCTTCCCA 57.286 42.857 0.00 0.00 34.40 4.37
279 280 9.425577 CAGTTAAAACAGTACAAAAGGGAAAAA 57.574 29.630 0.00 0.00 0.00 1.94
280 281 8.035984 CCAGTTAAAACAGTACAAAAGGGAAAA 58.964 33.333 0.00 0.00 0.00 2.29
281 282 7.178805 ACCAGTTAAAACAGTACAAAAGGGAAA 59.821 33.333 0.00 0.00 0.00 3.13
282 283 6.664384 ACCAGTTAAAACAGTACAAAAGGGAA 59.336 34.615 0.00 0.00 0.00 3.97
283 284 6.189133 ACCAGTTAAAACAGTACAAAAGGGA 58.811 36.000 0.00 0.00 0.00 4.20
284 285 6.459670 ACCAGTTAAAACAGTACAAAAGGG 57.540 37.500 0.00 0.00 0.00 3.95
285 286 8.652463 CAAAACCAGTTAAAACAGTACAAAAGG 58.348 33.333 0.00 0.00 0.00 3.11
286 287 9.198837 ACAAAACCAGTTAAAACAGTACAAAAG 57.801 29.630 0.00 0.00 0.00 2.27
287 288 9.543783 AACAAAACCAGTTAAAACAGTACAAAA 57.456 25.926 0.00 0.00 0.00 2.44
288 289 9.543783 AAACAAAACCAGTTAAAACAGTACAAA 57.456 25.926 0.00 0.00 0.00 2.83
289 290 8.979574 CAAACAAAACCAGTTAAAACAGTACAA 58.020 29.630 0.00 0.00 0.00 2.41
290 291 7.599245 CCAAACAAAACCAGTTAAAACAGTACA 59.401 33.333 0.00 0.00 0.00 2.90
291 292 7.599621 ACCAAACAAAACCAGTTAAAACAGTAC 59.400 33.333 0.00 0.00 0.00 2.73
292 293 7.668492 ACCAAACAAAACCAGTTAAAACAGTA 58.332 30.769 0.00 0.00 0.00 2.74
293 294 6.526526 ACCAAACAAAACCAGTTAAAACAGT 58.473 32.000 0.00 0.00 0.00 3.55
294 295 7.428282 AACCAAACAAAACCAGTTAAAACAG 57.572 32.000 0.00 0.00 0.00 3.16
295 296 7.803279 AAACCAAACAAAACCAGTTAAAACA 57.197 28.000 0.00 0.00 0.00 2.83
378 379 6.487689 AAAAGTTCACGAATTTGCCAAAAA 57.512 29.167 0.00 0.00 0.00 1.94
379 380 6.487689 AAAAAGTTCACGAATTTGCCAAAA 57.512 29.167 0.00 0.00 0.00 2.44
467 468 9.796120 ACTTCGTAATTTCAAGAAATTTCACAA 57.204 25.926 21.64 12.79 45.67 3.33
468 469 9.796120 AACTTCGTAATTTCAAGAAATTTCACA 57.204 25.926 21.64 5.50 45.67 3.58
474 475 9.810545 TTGGAAAACTTCGTAATTTCAAGAAAT 57.189 25.926 2.31 2.31 42.35 2.17
475 476 9.810545 ATTGGAAAACTTCGTAATTTCAAGAAA 57.189 25.926 0.00 0.00 35.32 2.52
476 477 9.810545 AATTGGAAAACTTCGTAATTTCAAGAA 57.189 25.926 0.00 0.00 35.32 2.52
477 478 9.458374 GAATTGGAAAACTTCGTAATTTCAAGA 57.542 29.630 0.00 0.00 35.32 3.02
478 479 9.463443 AGAATTGGAAAACTTCGTAATTTCAAG 57.537 29.630 0.00 0.00 35.32 3.02
479 480 9.810545 AAGAATTGGAAAACTTCGTAATTTCAA 57.189 25.926 0.00 0.00 35.32 2.69
480 481 9.243637 CAAGAATTGGAAAACTTCGTAATTTCA 57.756 29.630 0.00 0.00 43.94 2.69
519 520 9.463443 CAAAAACTAGAAAAATCGTTCCTCAAT 57.537 29.630 0.00 0.00 0.00 2.57
520 521 8.679100 TCAAAAACTAGAAAAATCGTTCCTCAA 58.321 29.630 0.00 0.00 0.00 3.02
521 522 8.215926 TCAAAAACTAGAAAAATCGTTCCTCA 57.784 30.769 0.00 0.00 0.00 3.86
522 523 8.955002 GTTCAAAAACTAGAAAAATCGTTCCTC 58.045 33.333 0.00 0.00 32.36 3.71
523 524 8.683615 AGTTCAAAAACTAGAAAAATCGTTCCT 58.316 29.630 0.00 0.00 43.98 3.36
524 525 8.851960 AGTTCAAAAACTAGAAAAATCGTTCC 57.148 30.769 0.00 0.00 43.98 3.62
546 547 9.838975 GGAAATTCACAAATTTGACAAAAAGTT 57.161 25.926 24.64 14.13 43.48 2.66
547 548 8.458052 GGGAAATTCACAAATTTGACAAAAAGT 58.542 29.630 24.64 7.36 43.48 2.66
548 549 7.914871 GGGGAAATTCACAAATTTGACAAAAAG 59.085 33.333 24.64 5.51 43.48 2.27
549 550 7.394359 TGGGGAAATTCACAAATTTGACAAAAA 59.606 29.630 24.64 10.58 43.48 1.94
550 551 6.886459 TGGGGAAATTCACAAATTTGACAAAA 59.114 30.769 24.64 12.16 43.48 2.44
551 552 6.418101 TGGGGAAATTCACAAATTTGACAAA 58.582 32.000 24.64 14.38 43.48 2.83
552 553 5.994250 TGGGGAAATTCACAAATTTGACAA 58.006 33.333 24.64 15.40 43.48 3.18
553 554 5.620738 TGGGGAAATTCACAAATTTGACA 57.379 34.783 24.64 7.41 43.48 3.58
554 555 6.934048 TTTGGGGAAATTCACAAATTTGAC 57.066 33.333 24.64 6.55 43.48 3.18
559 560 9.804977 TCATAAAATTTGGGGAAATTCACAAAT 57.195 25.926 16.66 16.66 43.20 2.32
560 561 9.061435 GTCATAAAATTTGGGGAAATTCACAAA 57.939 29.630 14.29 14.29 37.25 2.83
561 562 8.213679 TGTCATAAAATTTGGGGAAATTCACAA 58.786 29.630 0.00 0.00 31.66 3.33
562 563 7.739825 TGTCATAAAATTTGGGGAAATTCACA 58.260 30.769 0.00 0.00 31.66 3.58
563 564 8.791327 ATGTCATAAAATTTGGGGAAATTCAC 57.209 30.769 0.00 0.00 31.66 3.18
564 565 9.804977 AAATGTCATAAAATTTGGGGAAATTCA 57.195 25.926 0.00 0.00 31.66 2.57
568 569 9.859152 AGAAAAATGTCATAAAATTTGGGGAAA 57.141 25.926 0.00 0.00 0.00 3.13
582 583 9.965824 AAAAGTTCACGAATAGAAAAATGTCAT 57.034 25.926 0.00 0.00 0.00 3.06
583 584 9.796120 AAAAAGTTCACGAATAGAAAAATGTCA 57.204 25.926 0.00 0.00 0.00 3.58
634 635 8.614469 ATGTGAGTTTGAAAAAGGTTCAAAAA 57.386 26.923 14.06 3.33 46.16 1.94
635 636 8.614469 AATGTGAGTTTGAAAAAGGTTCAAAA 57.386 26.923 14.06 1.74 46.16 2.44
636 637 8.614469 AAATGTGAGTTTGAAAAAGGTTCAAA 57.386 26.923 9.56 9.56 43.62 2.69
637 638 8.614469 AAAATGTGAGTTTGAAAAAGGTTCAA 57.386 26.923 0.00 0.00 36.71 2.69
638 639 8.614469 AAAAATGTGAGTTTGAAAAAGGTTCA 57.386 26.923 0.00 0.00 0.00 3.18
660 661 8.563123 AGTTTAAAAATGGGAAAACGGAAAAA 57.437 26.923 0.00 0.00 37.02 1.94
661 662 8.563123 AAGTTTAAAAATGGGAAAACGGAAAA 57.437 26.923 0.00 0.00 37.02 2.29
662 663 8.563123 AAAGTTTAAAAATGGGAAAACGGAAA 57.437 26.923 0.00 0.00 37.02 3.13
663 664 8.563123 AAAAGTTTAAAAATGGGAAAACGGAA 57.437 26.923 0.00 0.00 37.02 4.30
664 665 8.563123 AAAAAGTTTAAAAATGGGAAAACGGA 57.437 26.923 0.00 0.00 37.02 4.69
665 666 8.451748 TGAAAAAGTTTAAAAATGGGAAAACGG 58.548 29.630 0.00 0.00 37.02 4.44
666 667 9.827411 TTGAAAAAGTTTAAAAATGGGAAAACG 57.173 25.926 0.00 0.00 37.02 3.60
684 685 8.110002 CGGTTGACTTTTGATTCTTTGAAAAAG 58.890 33.333 5.45 5.45 42.57 2.27
685 686 7.064016 CCGGTTGACTTTTGATTCTTTGAAAAA 59.936 33.333 0.00 0.00 0.00 1.94
686 687 6.533367 CCGGTTGACTTTTGATTCTTTGAAAA 59.467 34.615 0.00 0.00 0.00 2.29
687 688 6.039616 CCGGTTGACTTTTGATTCTTTGAAA 58.960 36.000 0.00 0.00 0.00 2.69
688 689 5.126384 ACCGGTTGACTTTTGATTCTTTGAA 59.874 36.000 0.00 0.00 0.00 2.69
689 690 4.642885 ACCGGTTGACTTTTGATTCTTTGA 59.357 37.500 0.00 0.00 0.00 2.69
690 691 4.932146 ACCGGTTGACTTTTGATTCTTTG 58.068 39.130 0.00 0.00 0.00 2.77
691 692 4.642885 TGACCGGTTGACTTTTGATTCTTT 59.357 37.500 9.42 0.00 0.00 2.52
692 693 4.204012 TGACCGGTTGACTTTTGATTCTT 58.796 39.130 9.42 0.00 0.00 2.52
693 694 3.815809 TGACCGGTTGACTTTTGATTCT 58.184 40.909 9.42 0.00 0.00 2.40
694 695 4.036380 AGTTGACCGGTTGACTTTTGATTC 59.964 41.667 9.42 0.00 0.00 2.52
695 696 3.951680 AGTTGACCGGTTGACTTTTGATT 59.048 39.130 9.42 0.00 0.00 2.57
696 697 3.315191 CAGTTGACCGGTTGACTTTTGAT 59.685 43.478 18.03 0.00 0.00 2.57
697 698 2.680841 CAGTTGACCGGTTGACTTTTGA 59.319 45.455 18.03 0.00 0.00 2.69
698 699 2.223479 CCAGTTGACCGGTTGACTTTTG 60.223 50.000 18.03 10.23 0.00 2.44
699 700 2.021457 CCAGTTGACCGGTTGACTTTT 58.979 47.619 18.03 0.00 0.00 2.27
700 701 1.064979 ACCAGTTGACCGGTTGACTTT 60.065 47.619 18.03 8.20 28.43 2.66
701 702 0.544697 ACCAGTTGACCGGTTGACTT 59.455 50.000 18.03 5.61 28.43 3.01
702 703 0.106149 GACCAGTTGACCGGTTGACT 59.894 55.000 9.42 13.45 34.99 3.41
703 704 0.179067 TGACCAGTTGACCGGTTGAC 60.179 55.000 9.42 11.08 34.99 3.18
704 705 0.762418 ATGACCAGTTGACCGGTTGA 59.238 50.000 9.42 0.00 34.99 3.18
705 706 1.604604 AATGACCAGTTGACCGGTTG 58.395 50.000 9.42 1.93 34.99 3.77
706 707 2.358322 AAATGACCAGTTGACCGGTT 57.642 45.000 9.42 0.00 34.99 4.44
707 708 2.358322 AAAATGACCAGTTGACCGGT 57.642 45.000 6.92 6.92 38.56 5.28
708 709 3.190535 CCTAAAAATGACCAGTTGACCGG 59.809 47.826 0.00 0.00 0.00 5.28
709 710 4.069304 TCCTAAAAATGACCAGTTGACCG 58.931 43.478 0.00 0.00 0.00 4.79
710 711 6.399639 TTTCCTAAAAATGACCAGTTGACC 57.600 37.500 0.00 0.00 0.00 4.02
732 733 2.328099 CCAGCTCGCTCGCCTTTTT 61.328 57.895 0.00 0.00 0.00 1.94
733 734 2.743928 CCAGCTCGCTCGCCTTTT 60.744 61.111 0.00 0.00 0.00 2.27
734 735 4.767255 CCCAGCTCGCTCGCCTTT 62.767 66.667 0.00 0.00 0.00 3.11
738 739 4.577246 CTACCCCAGCTCGCTCGC 62.577 72.222 0.00 0.00 0.00 5.03
739 740 2.711922 AACTACCCCAGCTCGCTCG 61.712 63.158 0.00 0.00 0.00 5.03
740 741 1.153549 CAACTACCCCAGCTCGCTC 60.154 63.158 0.00 0.00 0.00 5.03
741 742 2.660064 CCAACTACCCCAGCTCGCT 61.660 63.158 0.00 0.00 0.00 4.93
742 743 2.125106 CCAACTACCCCAGCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
743 744 2.584608 CCCAACTACCCCAGCTCG 59.415 66.667 0.00 0.00 0.00 5.03
744 745 2.272471 GCCCAACTACCCCAGCTC 59.728 66.667 0.00 0.00 0.00 4.09
745 746 3.339093 GGCCCAACTACCCCAGCT 61.339 66.667 0.00 0.00 0.00 4.24
746 747 4.796495 CGGCCCAACTACCCCAGC 62.796 72.222 0.00 0.00 0.00 4.85
747 748 4.109675 CCGGCCCAACTACCCCAG 62.110 72.222 0.00 0.00 0.00 4.45
748 749 4.660611 TCCGGCCCAACTACCCCA 62.661 66.667 0.00 0.00 0.00 4.96
749 750 4.105553 GTCCGGCCCAACTACCCC 62.106 72.222 0.00 0.00 0.00 4.95
750 751 4.105553 GGTCCGGCCCAACTACCC 62.106 72.222 0.00 0.00 0.00 3.69
751 752 3.324108 TGGTCCGGCCCAACTACC 61.324 66.667 0.00 0.00 36.04 3.18
752 753 2.046604 GTGGTCCGGCCCAACTAC 60.047 66.667 5.38 0.00 35.92 2.73
753 754 2.527123 TGTGGTCCGGCCCAACTA 60.527 61.111 5.38 0.00 35.92 2.24
754 755 3.953775 CTGTGGTCCGGCCCAACT 61.954 66.667 5.38 0.00 35.92 3.16
755 756 2.886134 TACTGTGGTCCGGCCCAAC 61.886 63.158 5.38 0.82 35.92 3.77
756 757 2.527123 TACTGTGGTCCGGCCCAA 60.527 61.111 5.38 0.00 35.92 4.12
757 758 3.315949 GTACTGTGGTCCGGCCCA 61.316 66.667 0.00 0.00 36.04 5.36
758 759 3.001406 AGTACTGTGGTCCGGCCC 61.001 66.667 11.72 3.08 36.04 5.80
759 760 2.280552 TGAGTACTGTGGTCCGGCC 61.281 63.158 0.00 1.41 37.90 6.13
760 761 1.080025 GTGAGTACTGTGGTCCGGC 60.080 63.158 0.00 0.00 0.00 6.13
761 762 0.895530 ATGTGAGTACTGTGGTCCGG 59.104 55.000 0.00 0.00 0.00 5.14
762 763 2.743636 AATGTGAGTACTGTGGTCCG 57.256 50.000 0.00 0.00 0.00 4.79
798 799 9.881529 CGACCTTTTACAGACTCTAATATAGAC 57.118 37.037 0.00 0.00 0.00 2.59
799 800 9.624373 ACGACCTTTTACAGACTCTAATATAGA 57.376 33.333 0.00 0.00 0.00 1.98
804 805 9.939802 AATAAACGACCTTTTACAGACTCTAAT 57.060 29.630 0.00 0.00 0.00 1.73
805 806 9.768662 AAATAAACGACCTTTTACAGACTCTAA 57.231 29.630 0.00 0.00 0.00 2.10
807 808 9.420551 CTAAATAAACGACCTTTTACAGACTCT 57.579 33.333 0.00 0.00 0.00 3.24
808 809 8.654215 CCTAAATAAACGACCTTTTACAGACTC 58.346 37.037 0.00 0.00 0.00 3.36
809 810 8.370182 TCCTAAATAAACGACCTTTTACAGACT 58.630 33.333 0.00 0.00 0.00 3.24
810 811 8.538409 TCCTAAATAAACGACCTTTTACAGAC 57.462 34.615 0.00 0.00 0.00 3.51
811 812 7.820872 CCTCCTAAATAAACGACCTTTTACAGA 59.179 37.037 0.00 0.00 0.00 3.41
812 813 7.820872 TCCTCCTAAATAAACGACCTTTTACAG 59.179 37.037 0.00 0.00 0.00 2.74
813 814 7.678837 TCCTCCTAAATAAACGACCTTTTACA 58.321 34.615 0.00 0.00 0.00 2.41
814 815 8.446273 GTTCCTCCTAAATAAACGACCTTTTAC 58.554 37.037 0.00 0.00 0.00 2.01
815 816 7.331687 CGTTCCTCCTAAATAAACGACCTTTTA 59.668 37.037 0.00 0.00 43.89 1.52
816 817 6.148315 CGTTCCTCCTAAATAAACGACCTTTT 59.852 38.462 0.00 0.00 43.89 2.27
817 818 5.640783 CGTTCCTCCTAAATAAACGACCTTT 59.359 40.000 0.00 0.00 43.89 3.11
818 819 5.173664 CGTTCCTCCTAAATAAACGACCTT 58.826 41.667 0.00 0.00 43.89 3.50
819 820 4.382362 CCGTTCCTCCTAAATAAACGACCT 60.382 45.833 7.44 0.00 43.89 3.85
820 821 3.867493 CCGTTCCTCCTAAATAAACGACC 59.133 47.826 7.44 0.00 43.89 4.79
821 822 4.328169 CACCGTTCCTCCTAAATAAACGAC 59.672 45.833 7.44 0.00 43.89 4.34
822 823 4.497300 CACCGTTCCTCCTAAATAAACGA 58.503 43.478 7.44 0.00 43.89 3.85
823 824 3.619929 CCACCGTTCCTCCTAAATAAACG 59.380 47.826 0.00 0.00 41.60 3.60
824 825 4.835678 TCCACCGTTCCTCCTAAATAAAC 58.164 43.478 0.00 0.00 0.00 2.01
825 826 5.013391 ACTTCCACCGTTCCTCCTAAATAAA 59.987 40.000 0.00 0.00 0.00 1.40
826 827 4.533311 ACTTCCACCGTTCCTCCTAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
827 828 4.098894 ACTTCCACCGTTCCTCCTAAATA 58.901 43.478 0.00 0.00 0.00 1.40
828 829 2.910977 ACTTCCACCGTTCCTCCTAAAT 59.089 45.455 0.00 0.00 0.00 1.40
829 830 2.332117 ACTTCCACCGTTCCTCCTAAA 58.668 47.619 0.00 0.00 0.00 1.85
830 831 2.019807 ACTTCCACCGTTCCTCCTAA 57.980 50.000 0.00 0.00 0.00 2.69
831 832 2.905415 TACTTCCACCGTTCCTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
832 833 2.019807 TTACTTCCACCGTTCCTCCT 57.980 50.000 0.00 0.00 0.00 3.69
833 834 2.845363 TTTACTTCCACCGTTCCTCC 57.155 50.000 0.00 0.00 0.00 4.30
834 835 6.806388 TTATTTTTACTTCCACCGTTCCTC 57.194 37.500 0.00 0.00 0.00 3.71
835 836 7.068470 TGTTTTATTTTTACTTCCACCGTTCCT 59.932 33.333 0.00 0.00 0.00 3.36
836 837 7.201835 TGTTTTATTTTTACTTCCACCGTTCC 58.798 34.615 0.00 0.00 0.00 3.62
837 838 7.380333 CCTGTTTTATTTTTACTTCCACCGTTC 59.620 37.037 0.00 0.00 0.00 3.95
838 839 7.204604 CCTGTTTTATTTTTACTTCCACCGTT 58.795 34.615 0.00 0.00 0.00 4.44
839 840 6.239092 CCCTGTTTTATTTTTACTTCCACCGT 60.239 38.462 0.00 0.00 0.00 4.83
840 841 6.153756 CCCTGTTTTATTTTTACTTCCACCG 58.846 40.000 0.00 0.00 0.00 4.94
841 842 5.929992 GCCCTGTTTTATTTTTACTTCCACC 59.070 40.000 0.00 0.00 0.00 4.61
842 843 6.517605 TGCCCTGTTTTATTTTTACTTCCAC 58.482 36.000 0.00 0.00 0.00 4.02
843 844 6.732896 TGCCCTGTTTTATTTTTACTTCCA 57.267 33.333 0.00 0.00 0.00 3.53
844 845 8.615878 ATTTGCCCTGTTTTATTTTTACTTCC 57.384 30.769 0.00 0.00 0.00 3.46
922 924 2.033602 GGGGAAAGTGTGACCCGG 59.966 66.667 0.00 0.00 44.09 5.73
929 931 1.821088 AGAAGGTCAGGGGAAAGTGT 58.179 50.000 0.00 0.00 0.00 3.55
930 932 2.553247 GGAAGAAGGTCAGGGGAAAGTG 60.553 54.545 0.00 0.00 0.00 3.16
993 1007 3.423154 GTTGCAGCGGGGAAGACG 61.423 66.667 0.00 0.00 0.00 4.18
994 1008 3.423154 CGTTGCAGCGGGGAAGAC 61.423 66.667 15.84 0.00 0.00 3.01
1124 1144 4.035102 GCAGAGGAACGCCCCCTT 62.035 66.667 0.00 0.00 33.36 3.95
1133 1153 2.584261 GATGAGCAGCGGCAGAGGAA 62.584 60.000 12.44 0.00 44.61 3.36
1199 1219 2.178273 GCCGAAACCAATCCGTGC 59.822 61.111 0.00 0.00 0.00 5.34
1270 1304 7.502226 ACACTGACCACTGAAAATTCATTAAGA 59.498 33.333 0.00 0.00 36.46 2.10
1280 1314 3.270027 CACTGACACTGACCACTGAAAA 58.730 45.455 0.00 0.00 0.00 2.29
1281 1315 2.419990 CCACTGACACTGACCACTGAAA 60.420 50.000 0.00 0.00 0.00 2.69
1296 1330 5.670792 AGTATTAACCGAATGTCCACTGA 57.329 39.130 0.00 0.00 0.00 3.41
1314 1348 7.124052 TCTAGGAGTTGCCAAAGTACTAGTAT 58.876 38.462 5.75 0.00 45.31 2.12
1419 1464 7.338449 TGGCCTATAATGTTTTGTTAGAACTCC 59.662 37.037 3.32 0.00 0.00 3.85
1436 1481 9.523168 AATGTACTTTAACTTTGTGGCCTATAA 57.477 29.630 3.32 0.00 0.00 0.98
1562 1620 1.950909 CTACGGGGAGAGAGTAAGCAG 59.049 57.143 0.00 0.00 0.00 4.24
1579 1637 8.566260 ACAATCTATTACTATGACCGTCACTAC 58.434 37.037 2.57 0.00 0.00 2.73
1632 1693 1.003233 GACTGCGGCTCCTCCTTTT 60.003 57.895 0.00 0.00 0.00 2.27
1648 1709 2.533266 TGACTTTCAGAGGCAGTGAC 57.467 50.000 0.00 0.00 38.93 3.67
1673 1734 3.948126 TGGAATATGGTAGTGGATGGGA 58.052 45.455 0.00 0.00 0.00 4.37
1674 1735 4.722526 TTGGAATATGGTAGTGGATGGG 57.277 45.455 0.00 0.00 0.00 4.00
1681 1749 8.044908 AGTTACATTCGTTTGGAATATGGTAGT 58.955 33.333 0.00 0.00 43.52 2.73
1770 1970 4.395854 TGTGCACATGACATATCTTCAACC 59.604 41.667 17.42 0.00 0.00 3.77
1787 1989 1.255767 GTTGACGTTTGTGTGTGCAC 58.744 50.000 10.75 10.75 45.44 4.57
1807 2009 1.209128 CTGTATTCGACATGGACCGC 58.791 55.000 0.00 0.00 37.45 5.68
1809 2011 3.520290 TGACTGTATTCGACATGGACC 57.480 47.619 0.00 0.00 37.45 4.46
1834 2036 4.749245 ACAGGAAGTGAACTTAATTGCG 57.251 40.909 0.00 0.00 36.11 4.85
1976 2178 5.422666 AATTTTCTGCGATTGATGCGATA 57.577 34.783 0.00 0.00 34.24 2.92
1978 2180 3.763097 AATTTTCTGCGATTGATGCGA 57.237 38.095 0.00 0.00 34.24 5.10
2220 2442 3.332919 CACAAGTCTAGCAGCAAGACAT 58.667 45.455 6.06 0.00 44.77 3.06
2254 2483 4.214971 GCATAGGCCAAGTGATCATGTAAG 59.785 45.833 5.01 0.00 0.00 2.34
2298 2530 2.842457 TGGAATTCGCCATGATCTCAG 58.158 47.619 0.00 0.00 31.66 3.35
2413 2682 1.333636 CCCCAGCTTGAGATCTCGGT 61.334 60.000 17.76 7.32 0.00 4.69
2415 2684 1.227497 GCCCCAGCTTGAGATCTCG 60.227 63.158 17.76 5.78 35.50 4.04
2630 2923 1.120530 TAAGGGAGCGACTGGAATCC 58.879 55.000 0.00 0.00 0.00 3.01
2760 3053 1.893808 GATGCAGGTATGTGCCCGG 60.894 63.158 0.00 0.00 43.28 5.73
2890 3183 1.996798 TACCTGAGAGCCTATTCCCG 58.003 55.000 0.00 0.00 0.00 5.14
3016 3309 6.433847 TTTTCAGAAAGGTCCAGATAGTCA 57.566 37.500 0.00 0.00 0.00 3.41
3037 3330 1.348064 TGGGTCCTGACAGACGATTT 58.652 50.000 3.32 0.00 37.66 2.17
5050 6178 5.356426 GTTGAAGCTAGATTTCCTCTCTCC 58.644 45.833 0.00 0.00 35.28 3.71
5248 6376 4.579869 ACATTCTTGCAATACCGAAGTCT 58.420 39.130 0.00 0.00 0.00 3.24
5369 6497 5.530171 GTGCAGATCATTCCATCTAACACAT 59.470 40.000 0.00 0.00 38.19 3.21
5685 6823 7.938563 AGATCTCGATAAACTTTCAGCATAC 57.061 36.000 0.00 0.00 0.00 2.39
5830 9669 7.217200 ACAGCTAAGTTCAAGATGAAGTTACA 58.783 34.615 13.62 1.34 45.30 2.41
5843 9682 7.569639 AACTCTATATCGACAGCTAAGTTCA 57.430 36.000 0.00 0.00 0.00 3.18
5853 9692 7.854422 GTGACGATGTTAAACTCTATATCGACA 59.146 37.037 10.84 8.15 39.60 4.35
5854 9693 7.323177 GGTGACGATGTTAAACTCTATATCGAC 59.677 40.741 10.84 5.84 39.60 4.20
5856 9695 6.581542 GGGTGACGATGTTAAACTCTATATCG 59.418 42.308 0.00 0.00 42.04 2.92
5863 9702 7.656137 ACATATATGGGTGACGATGTTAAACTC 59.344 37.037 16.96 0.00 0.00 3.01
5867 9706 7.151976 CAGACATATATGGGTGACGATGTTAA 58.848 38.462 16.96 0.00 0.00 2.01
5877 9716 3.332919 GCTCAGCAGACATATATGGGTG 58.667 50.000 16.96 13.72 0.00 4.61
5893 9732 4.156190 ACCCATATATTCTACGACGCTCAG 59.844 45.833 0.00 0.00 0.00 3.35
5896 9735 4.077108 TGACCCATATATTCTACGACGCT 58.923 43.478 0.00 0.00 0.00 5.07
5899 9738 7.548097 ACATCATGACCCATATATTCTACGAC 58.452 38.462 0.00 0.00 0.00 4.34
5905 9744 8.939929 CAGTGTAACATCATGACCCATATATTC 58.060 37.037 0.00 0.00 41.43 1.75
5909 9748 6.252599 ACAGTGTAACATCATGACCCATAT 57.747 37.500 0.00 0.00 41.43 1.78
5910 9749 5.692115 ACAGTGTAACATCATGACCCATA 57.308 39.130 0.00 0.00 41.43 2.74
6030 9870 6.031751 AGATAACAGAAGTTCAGAGTGTCC 57.968 41.667 5.50 0.00 39.15 4.02
6100 9940 2.686835 AGCTCCTCCTCCACAGGC 60.687 66.667 0.00 0.00 40.12 4.85
6138 9978 0.994995 CGCGAAGGAGTGACAAGATG 59.005 55.000 0.00 0.00 0.00 2.90
6147 9987 3.575351 GACAGCCACGCGAAGGAGT 62.575 63.158 22.84 18.98 0.00 3.85
6202 10042 3.656045 CGTGGCAAACCCCGTCAC 61.656 66.667 0.00 0.00 35.62 3.67
6247 10087 4.202253 CGAGGAGGATATGGTCAATTGACA 60.202 45.833 33.42 22.09 46.47 3.58
6298 10138 2.281761 CCCCAAAGAGCGCACAGT 60.282 61.111 11.47 0.00 0.00 3.55
6313 10153 0.467290 TTGTTGAACCTGGACTGCCC 60.467 55.000 0.00 0.00 0.00 5.36
6333 10173 9.610705 TGAAATGTCTTCAATTTCAAATCCAAA 57.389 25.926 8.67 0.00 40.16 3.28
6348 10188 6.092807 GGTACAAGATGGTCTGAAATGTCTTC 59.907 42.308 0.00 0.00 0.00 2.87
6400 10240 6.528321 TCAAGTAGAGGGAAATGCATATCTG 58.472 40.000 0.00 0.00 0.00 2.90
6408 10248 6.702329 AGTACAGTTCAAGTAGAGGGAAATG 58.298 40.000 0.00 0.00 41.04 2.32
6434 10274 1.069906 GGCACAGATGTTGAACACGAC 60.070 52.381 0.00 0.00 0.00 4.34
6449 10289 1.302431 CCATGTCTTCCACGGCACA 60.302 57.895 0.00 0.00 0.00 4.57
6481 10321 2.288152 GGCATGGACAACGTTGATGTTT 60.288 45.455 33.66 11.84 0.00 2.83
6482 10322 1.269448 GGCATGGACAACGTTGATGTT 59.731 47.619 33.66 12.25 0.00 2.71
6483 10323 0.881118 GGCATGGACAACGTTGATGT 59.119 50.000 33.66 13.63 0.00 3.06
6484 10324 0.171007 GGGCATGGACAACGTTGATG 59.829 55.000 33.66 25.30 0.00 3.07
6486 10326 0.466372 TTGGGCATGGACAACGTTGA 60.466 50.000 33.66 13.02 0.00 3.18
6487 10327 0.602562 ATTGGGCATGGACAACGTTG 59.397 50.000 26.20 26.20 0.00 4.10
6488 10328 1.816224 GTATTGGGCATGGACAACGTT 59.184 47.619 0.00 0.00 0.00 3.99
6489 10329 1.271652 TGTATTGGGCATGGACAACGT 60.272 47.619 0.00 0.00 0.00 3.99
6490 10330 1.458398 TGTATTGGGCATGGACAACG 58.542 50.000 0.00 0.00 0.00 4.10
6491 10331 3.951037 TGTATGTATTGGGCATGGACAAC 59.049 43.478 0.00 0.00 0.00 3.32
6492 10332 4.242336 TGTATGTATTGGGCATGGACAA 57.758 40.909 0.00 0.00 0.00 3.18
6493 10333 3.941704 TGTATGTATTGGGCATGGACA 57.058 42.857 0.00 0.00 0.00 4.02
6494 10334 5.312895 TGTATGTATGTATTGGGCATGGAC 58.687 41.667 0.00 0.00 0.00 4.02
6496 10336 6.883756 TGTATGTATGTATGTATTGGGCATGG 59.116 38.462 0.00 0.00 0.00 3.66
6497 10337 7.920160 TGTATGTATGTATGTATTGGGCATG 57.080 36.000 0.00 0.00 0.00 4.06
6498 10338 8.959548 CAATGTATGTATGTATGTATTGGGCAT 58.040 33.333 0.00 0.00 0.00 4.40
6499 10339 7.941790 ACAATGTATGTATGTATGTATTGGGCA 59.058 33.333 0.00 0.00 41.63 5.36
6502 10342 8.168626 GCGACAATGTATGTATGTATGTATTGG 58.831 37.037 0.00 0.00 44.12 3.16
6504 10344 8.825667 TGCGACAATGTATGTATGTATGTATT 57.174 30.769 0.00 0.00 44.12 1.89
6508 10348 8.894864 CAAAATGCGACAATGTATGTATGTATG 58.105 33.333 0.00 0.00 44.12 2.39
6509 10349 8.620416 ACAAAATGCGACAATGTATGTATGTAT 58.380 29.630 0.00 0.00 44.12 2.29
6510 10350 7.980062 ACAAAATGCGACAATGTATGTATGTA 58.020 30.769 0.00 0.00 44.12 2.29
6511 10351 6.851609 ACAAAATGCGACAATGTATGTATGT 58.148 32.000 0.00 0.00 44.12 2.29
6512 10352 9.449550 AATACAAAATGCGACAATGTATGTATG 57.550 29.630 12.37 0.00 44.12 2.39
6518 10358 9.335891 CAGTAAAATACAAAATGCGACAATGTA 57.664 29.630 0.00 0.00 0.00 2.29
6519 10359 7.148820 GCAGTAAAATACAAAATGCGACAATGT 60.149 33.333 0.00 0.00 0.00 2.71
6520 10360 7.166168 GCAGTAAAATACAAAATGCGACAATG 58.834 34.615 0.00 0.00 0.00 2.82
6525 11590 5.637006 AGGCAGTAAAATACAAAATGCGA 57.363 34.783 0.00 0.00 33.08 5.10
6535 11600 9.662947 GAGGTAAAGAAAGTAGGCAGTAAAATA 57.337 33.333 0.00 0.00 0.00 1.40
6557 11622 4.042187 AGCATAGTTGGTCTTTCTTGAGGT 59.958 41.667 0.00 0.00 0.00 3.85
6567 11632 4.357918 ACACTTTCAGCATAGTTGGTCT 57.642 40.909 0.00 0.00 0.00 3.85
6587 11652 7.856145 ACTTCAGATGGAAAGATGTCAATAC 57.144 36.000 0.00 0.00 34.44 1.89
6706 11771 6.686630 AGTGTGTTTTGTTCACTCATTTCAA 58.313 32.000 0.00 0.00 37.84 2.69
6716 11781 3.242155 CGCGTCTTAGTGTGTTTTGTTCA 60.242 43.478 0.00 0.00 0.00 3.18
6717 11782 3.242188 ACGCGTCTTAGTGTGTTTTGTTC 60.242 43.478 5.58 0.00 33.08 3.18
6721 11786 2.817901 AGACGCGTCTTAGTGTGTTTT 58.182 42.857 34.98 9.75 36.31 2.43
6808 11873 7.192852 TGATGCCCACCAAAAATAACATAAT 57.807 32.000 0.00 0.00 0.00 1.28
6810 11875 6.805016 ATGATGCCCACCAAAAATAACATA 57.195 33.333 0.00 0.00 0.00 2.29
6891 11956 8.910351 ATATATCATCATGAGCTTGATCCATG 57.090 34.615 12.47 3.80 39.08 3.66
6976 12042 2.502130 GGAAGGAAGGTCAGGAGGTAAG 59.498 54.545 0.00 0.00 0.00 2.34
6980 12046 0.908198 CTGGAAGGAAGGTCAGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
6983 12049 2.959465 AAACTGGAAGGAAGGTCAGG 57.041 50.000 0.00 0.00 39.30 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.