Multiple sequence alignment - TraesCS5D01G338900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G338900 chr5D 100.000 4482 0 0 1 4482 428388936 428384455 0.000000e+00 8277
1 TraesCS5D01G338900 chr5A 88.927 2050 133 40 2467 4482 543928520 543926531 0.000000e+00 2442
2 TraesCS5D01G338900 chr5A 92.647 1564 90 16 120 1666 543930577 543929022 0.000000e+00 2228
3 TraesCS5D01G338900 chr5A 92.715 453 21 2 1919 2359 543928987 543928535 1.050000e-180 643
4 TraesCS5D01G338900 chr5B 92.303 1676 93 24 5 1666 517577797 517576144 0.000000e+00 2348
5 TraesCS5D01G338900 chr5B 94.440 1241 41 8 2509 3726 517575211 517573976 0.000000e+00 1884
6 TraesCS5D01G338900 chr5B 87.423 652 46 13 3839 4482 517573980 517573357 0.000000e+00 717
7 TraesCS5D01G338900 chr5B 90.414 459 30 2 1915 2359 517576114 517575656 3.860000e-165 592
8 TraesCS5D01G338900 chr5B 94.048 84 4 1 2356 2438 51843382 51843299 4.710000e-25 126
9 TraesCS5D01G338900 chrUn 91.441 444 25 1 1929 2359 220215362 220215805 8.300000e-167 597
10 TraesCS5D01G338900 chrUn 95.988 324 13 0 2440 2763 220215804 220216127 1.100000e-145 527
11 TraesCS5D01G338900 chrUn 91.667 204 8 6 1458 1660 220215119 220215314 1.590000e-69 274
12 TraesCS5D01G338900 chrUn 90.643 171 14 2 1752 1921 97777745 97777576 4.510000e-55 226
13 TraesCS5D01G338900 chr2B 91.441 444 24 2 1929 2359 35017261 35016819 8.300000e-167 597
14 TraesCS5D01G338900 chr2B 90.686 204 10 6 1458 1660 35017504 35017309 3.440000e-66 263
15 TraesCS5D01G338900 chr2B 88.182 220 23 1 1664 1883 182705396 182705612 4.450000e-65 259
16 TraesCS5D01G338900 chr2B 86.335 161 13 6 1663 1819 531050281 531050436 2.770000e-37 167
17 TraesCS5D01G338900 chr6B 91.216 444 25 2 1929 2359 623377565 623378007 3.860000e-165 592
18 TraesCS5D01G338900 chr6B 90.686 204 10 6 1458 1660 623377322 623377517 3.440000e-66 263
19 TraesCS5D01G338900 chr6B 91.573 178 13 2 2440 2616 623378006 623378182 1.250000e-60 244
20 TraesCS5D01G338900 chr4A 91.216 444 25 2 1929 2359 609391445 609391887 3.860000e-165 592
21 TraesCS5D01G338900 chr4A 90.991 444 25 5 1929 2359 609307829 609308270 6.460000e-163 584
22 TraesCS5D01G338900 chr4A 91.176 204 9 6 1458 1660 609391202 609391397 7.390000e-68 268
23 TraesCS5D01G338900 chr4A 92.135 178 12 2 2440 2616 609391886 609392062 2.680000e-62 250
24 TraesCS5D01G338900 chr4A 91.573 178 13 2 2440 2616 609308269 609308445 1.250000e-60 244
25 TraesCS5D01G338900 chr4A 80.478 251 37 10 1675 1922 281526591 281526350 9.900000e-42 182
26 TraesCS5D01G338900 chr7B 90.991 444 26 2 1929 2359 747635058 747635500 1.800000e-163 586
27 TraesCS5D01G338900 chr7B 90.341 352 20 2 1929 2267 747634314 747634664 2.460000e-122 449
28 TraesCS5D01G338900 chr7B 86.667 255 31 2 1661 1915 523803600 523803851 3.410000e-71 279
29 TraesCS5D01G338900 chr7B 90.686 204 10 6 1458 1660 747634815 747635010 3.440000e-66 263
30 TraesCS5D01G338900 chr7B 91.573 178 13 2 2440 2616 747635499 747635675 1.250000e-60 244
31 TraesCS5D01G338900 chr7B 84.753 223 28 5 1706 1924 631059444 631059224 7.550000e-53 219
32 TraesCS5D01G338900 chr3B 90.991 444 25 5 1929 2359 89593216 89593657 6.460000e-163 584
33 TraesCS5D01G338900 chr3B 84.977 213 28 3 1709 1918 561025738 561025527 3.510000e-51 213
34 TraesCS5D01G338900 chr3B 94.048 84 4 1 2356 2438 380679463 380679546 4.710000e-25 126
35 TraesCS5D01G338900 chr7A 90.766 444 27 2 1929 2359 671181876 671181434 8.360000e-162 580
36 TraesCS5D01G338900 chr7A 91.176 204 9 6 1458 1660 671182119 671181924 7.390000e-68 268
37 TraesCS5D01G338900 chr7A 92.135 178 12 2 2440 2616 671181435 671181259 2.680000e-62 250
38 TraesCS5D01G338900 chr7A 94.048 84 3 2 2356 2438 290616133 290616051 4.710000e-25 126
39 TraesCS5D01G338900 chr7A 88.889 99 7 4 2341 2438 290616037 290616132 7.880000e-23 119
40 TraesCS5D01G338900 chr2D 87.597 258 27 5 1663 1919 450915654 450915907 1.220000e-75 294
41 TraesCS5D01G338900 chr3A 90.686 204 10 6 1458 1660 22539555 22539750 3.440000e-66 263
42 TraesCS5D01G338900 chr3A 92.135 178 12 2 2440 2616 22540255 22540431 2.680000e-62 250
43 TraesCS5D01G338900 chr3A 93.258 89 4 2 2351 2438 65949406 65949493 3.640000e-26 130
44 TraesCS5D01G338900 chr2A 85.417 240 32 3 1661 1898 615339877 615340115 3.460000e-61 246
45 TraesCS5D01G338900 chr7D 85.581 215 26 4 1708 1922 374767889 374767680 2.100000e-53 220
46 TraesCS5D01G338900 chr7D 88.350 103 6 5 2348 2445 600971937 600971836 7.880000e-23 119
47 TraesCS5D01G338900 chr4B 83.262 233 30 5 1674 1904 144697664 144697889 5.880000e-49 206
48 TraesCS5D01G338900 chr4D 96.552 87 2 1 2353 2438 303843556 303843470 4.670000e-30 143
49 TraesCS5D01G338900 chr3D 88.235 102 7 5 2343 2441 537914144 537914045 2.830000e-22 117
50 TraesCS5D01G338900 chr1D 87.379 103 9 4 2337 2438 357317609 357317708 1.020000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G338900 chr5D 428384455 428388936 4481 True 8277.000000 8277 100.000000 1 4482 1 chr5D.!!$R1 4481
1 TraesCS5D01G338900 chr5A 543926531 543930577 4046 True 1771.000000 2442 91.429667 120 4482 3 chr5A.!!$R1 4362
2 TraesCS5D01G338900 chr5B 517573357 517577797 4440 True 1385.250000 2348 91.145000 5 4482 4 chr5B.!!$R2 4477
3 TraesCS5D01G338900 chrUn 220215119 220216127 1008 False 466.000000 597 93.032000 1458 2763 3 chrUn.!!$F1 1305
4 TraesCS5D01G338900 chr2B 35016819 35017504 685 True 430.000000 597 91.063500 1458 2359 2 chr2B.!!$R1 901
5 TraesCS5D01G338900 chr6B 623377322 623378182 860 False 366.333333 592 91.158333 1458 2616 3 chr6B.!!$F1 1158
6 TraesCS5D01G338900 chr4A 609307829 609308445 616 False 414.000000 584 91.282000 1929 2616 2 chr4A.!!$F1 687
7 TraesCS5D01G338900 chr4A 609391202 609392062 860 False 370.000000 592 91.509000 1458 2616 3 chr4A.!!$F2 1158
8 TraesCS5D01G338900 chr7B 747634314 747635675 1361 False 385.500000 586 90.897750 1458 2616 4 chr7B.!!$F2 1158
9 TraesCS5D01G338900 chr7A 671181259 671182119 860 True 366.000000 580 91.359000 1458 2616 3 chr7A.!!$R2 1158
10 TraesCS5D01G338900 chr3A 22539555 22540431 876 False 256.500000 263 91.410500 1458 2616 2 chr3A.!!$F2 1158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.620556 AATGGGGTGCCTGTACTCTG 59.379 55.0 0.0 0.0 0.00 3.35 F
1673 1705 0.040157 TGTCAAACGACGGGTCTACG 60.040 55.0 0.0 0.0 36.09 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1845 0.036164 ACGTGCCTCCAGTATTGCAA 59.964 50.000 0.00 0.00 35.16 4.08 R
3644 4118 1.135721 GGGAAACAAGGCATGATGCTC 59.864 52.381 17.84 7.55 44.28 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.004629 TCAGTGTGGTTGCTTGCTAAATG 59.995 43.478 0.00 0.00 0.00 2.32
56 57 8.743714 AGGATTTGAGGAAATTTGTAGCTTTAG 58.256 33.333 0.00 0.00 31.58 1.85
71 72 6.758416 TGTAGCTTTAGTTGCTGTCATCATAG 59.242 38.462 0.00 0.00 41.32 2.23
73 74 5.814705 AGCTTTAGTTGCTGTCATCATAGTC 59.185 40.000 0.00 0.00 39.56 2.59
103 104 7.092137 TCAAATTCAGCTTCATTACATCTGG 57.908 36.000 0.00 0.00 0.00 3.86
113 114 6.073548 GCTTCATTACATCTGGGAAGATAACG 60.074 42.308 0.00 0.00 37.70 3.18
190 191 4.473444 CAACATAATAGAATGGGGTGCCT 58.527 43.478 0.00 0.00 0.00 4.75
191 192 4.104383 ACATAATAGAATGGGGTGCCTG 57.896 45.455 0.00 0.00 0.00 4.85
192 193 3.463329 ACATAATAGAATGGGGTGCCTGT 59.537 43.478 0.00 0.00 0.00 4.00
193 194 4.663120 ACATAATAGAATGGGGTGCCTGTA 59.337 41.667 0.00 0.00 0.00 2.74
194 195 3.577805 AATAGAATGGGGTGCCTGTAC 57.422 47.619 0.00 0.00 0.00 2.90
197 198 0.912486 GAATGGGGTGCCTGTACTCT 59.088 55.000 0.00 0.00 0.00 3.24
198 199 0.620556 AATGGGGTGCCTGTACTCTG 59.379 55.000 0.00 0.00 0.00 3.35
264 277 0.990374 AAGTGCTCTGGGAGATTGCT 59.010 50.000 0.00 0.00 0.00 3.91
418 433 5.237344 GCAAGATAGTTTCATACGCAGGAAT 59.763 40.000 0.00 0.00 0.00 3.01
512 529 5.819901 GGCTGAGAACAGAATAAGCACTATT 59.180 40.000 0.00 0.00 46.03 1.73
530 547 9.950496 AGCACTATTATGATTAATCCAAGTAGG 57.050 33.333 12.90 6.81 39.47 3.18
612 629 3.055963 GTGATGGCATGGTTGGAATTCAA 60.056 43.478 3.81 0.00 0.00 2.69
634 651 9.985318 TTCAAGCACAAATCTTTAATTTGTTTG 57.015 25.926 12.19 14.07 46.45 2.93
684 703 7.629222 GCCATGTACAGCTGATTAATTTGTTCT 60.629 37.037 23.35 0.00 0.00 3.01
685 704 7.912250 CCATGTACAGCTGATTAATTTGTTCTC 59.088 37.037 23.35 0.00 0.00 2.87
687 706 8.032952 TGTACAGCTGATTAATTTGTTCTCTG 57.967 34.615 23.35 0.00 0.00 3.35
688 707 7.877612 TGTACAGCTGATTAATTTGTTCTCTGA 59.122 33.333 23.35 0.00 0.00 3.27
689 708 7.750229 ACAGCTGATTAATTTGTTCTCTGAA 57.250 32.000 23.35 0.00 0.00 3.02
691 710 8.800332 ACAGCTGATTAATTTGTTCTCTGAATT 58.200 29.630 23.35 0.00 0.00 2.17
694 713 9.415544 GCTGATTAATTTGTTCTCTGAATTTGT 57.584 29.630 0.00 0.00 0.00 2.83
699 718 5.828299 TTTGTTCTCTGAATTTGTTCGGT 57.172 34.783 0.00 0.00 0.00 4.69
738 766 4.473444 ACATCATCTGGTGTTGAAACCTT 58.527 39.130 6.01 0.00 41.16 3.50
746 774 3.942748 TGGTGTTGAAACCTTGTACTGAC 59.057 43.478 0.00 0.00 41.16 3.51
747 775 3.001939 GGTGTTGAAACCTTGTACTGACG 59.998 47.826 0.00 0.00 37.24 4.35
786 814 2.092968 TGAAGCACTGAACCTGAACAGT 60.093 45.455 0.00 0.00 46.32 3.55
866 894 3.820084 TATAGGCCGCCTTCGTCTCCA 62.820 57.143 19.35 0.00 34.61 3.86
1149 1178 3.130516 TCTTTACGGATGCTCTGGTACTG 59.869 47.826 0.00 0.00 0.00 2.74
1295 1326 4.465660 TGGCAATCTAGATCTAGGCATCTC 59.534 45.833 26.02 13.76 34.75 2.75
1333 1364 5.235186 CACCGAGATAGCTCAAATTCGATTT 59.765 40.000 8.99 0.00 41.36 2.17
1356 1387 7.563888 TTCATCTCCTGTCAAATCATCATTC 57.436 36.000 0.00 0.00 0.00 2.67
1526 1558 0.108138 CCATGGGACTGGTTCGAGAC 60.108 60.000 2.85 0.00 0.00 3.36
1527 1559 0.898320 CATGGGACTGGTTCGAGACT 59.102 55.000 0.00 0.00 0.00 3.24
1528 1560 0.898320 ATGGGACTGGTTCGAGACTG 59.102 55.000 0.00 0.00 0.00 3.51
1540 1572 2.025155 TCGAGACTGGTCCTGATAAGC 58.975 52.381 2.23 0.00 0.00 3.09
1660 1692 8.651391 TCGAAATCTAGTTTGTAACTGTCAAA 57.349 30.769 2.45 0.00 42.84 2.69
1666 1698 3.600346 GTTTGTAACTGTCAAACGACGG 58.400 45.455 8.69 0.00 42.84 4.79
1667 1699 1.855513 TGTAACTGTCAAACGACGGG 58.144 50.000 0.00 0.00 43.05 5.28
1668 1700 1.136695 TGTAACTGTCAAACGACGGGT 59.863 47.619 0.00 1.94 43.05 5.28
1669 1701 1.788886 GTAACTGTCAAACGACGGGTC 59.211 52.381 0.00 0.00 43.05 4.46
1671 1703 1.321474 ACTGTCAAACGACGGGTCTA 58.679 50.000 0.00 0.00 43.05 2.59
1672 1704 1.000938 ACTGTCAAACGACGGGTCTAC 60.001 52.381 0.00 0.00 43.05 2.59
1673 1705 0.040157 TGTCAAACGACGGGTCTACG 60.040 55.000 0.00 0.00 36.09 3.51
1682 1714 0.939419 ACGGGTCTACGTTTTGCAAC 59.061 50.000 0.00 0.00 46.25 4.17
1683 1715 0.938713 CGGGTCTACGTTTTGCAACA 59.061 50.000 0.00 0.00 32.54 3.33
1685 1717 2.223294 CGGGTCTACGTTTTGCAACAAA 60.223 45.455 0.00 0.00 32.54 2.83
1688 1720 4.417506 GGTCTACGTTTTGCAACAAAACT 58.582 39.130 25.08 17.38 37.83 2.66
1689 1721 4.860352 GGTCTACGTTTTGCAACAAAACTT 59.140 37.500 25.08 20.64 37.83 2.66
1690 1722 5.346551 GGTCTACGTTTTGCAACAAAACTTT 59.653 36.000 25.08 17.37 37.83 2.66
1692 1724 6.946037 GTCTACGTTTTGCAACAAAACTTTTC 59.054 34.615 25.08 12.99 37.83 2.29
1693 1725 5.915812 ACGTTTTGCAACAAAACTTTTCT 57.084 30.435 25.08 7.37 37.83 2.52
1695 1727 6.132724 ACGTTTTGCAACAAAACTTTTCTTG 58.867 32.000 25.08 14.64 37.83 3.02
1697 1729 3.987807 TGCAACAAAACTTTTCTTGCG 57.012 38.095 17.28 0.00 36.92 4.85
1698 1730 3.579709 TGCAACAAAACTTTTCTTGCGA 58.420 36.364 17.28 8.17 36.92 5.10
1699 1731 3.990469 TGCAACAAAACTTTTCTTGCGAA 59.010 34.783 17.28 3.99 36.92 4.70
1700 1732 4.449068 TGCAACAAAACTTTTCTTGCGAAA 59.551 33.333 17.28 3.45 36.92 3.46
1701 1733 5.121454 TGCAACAAAACTTTTCTTGCGAAAT 59.879 32.000 17.28 0.00 38.81 2.17
1702 1734 6.020984 GCAACAAAACTTTTCTTGCGAAATT 58.979 32.000 10.33 0.00 38.81 1.82
1703 1735 6.522855 GCAACAAAACTTTTCTTGCGAAATTT 59.477 30.769 10.33 0.00 38.81 1.82
1704 1736 7.060518 GCAACAAAACTTTTCTTGCGAAATTTT 59.939 29.630 10.33 0.00 38.81 1.82
1705 1737 8.900762 CAACAAAACTTTTCTTGCGAAATTTTT 58.099 25.926 0.00 0.00 38.81 1.94
1706 1738 8.653984 ACAAAACTTTTCTTGCGAAATTTTTC 57.346 26.923 0.00 0.00 38.81 2.29
1707 1739 8.503196 ACAAAACTTTTCTTGCGAAATTTTTCT 58.497 25.926 0.00 0.00 38.81 2.52
1708 1740 8.778640 CAAAACTTTTCTTGCGAAATTTTTCTG 58.221 29.630 0.00 0.00 38.81 3.02
1709 1741 6.036246 ACTTTTCTTGCGAAATTTTTCTGC 57.964 33.333 0.00 10.71 38.81 4.26
1710 1742 5.580297 ACTTTTCTTGCGAAATTTTTCTGCA 59.420 32.000 14.19 14.19 41.33 4.41
1711 1743 6.091986 ACTTTTCTTGCGAAATTTTTCTGCAA 59.908 30.769 21.88 21.88 45.14 4.08
1712 1744 5.388225 TTCTTGCGAAATTTTTCTGCAAC 57.612 34.783 20.61 2.64 43.93 4.17
1713 1745 4.428209 TCTTGCGAAATTTTTCTGCAACA 58.572 34.783 20.61 13.76 43.93 3.33
1714 1746 4.867047 TCTTGCGAAATTTTTCTGCAACAA 59.133 33.333 20.61 13.90 43.93 2.83
1715 1747 4.775440 TGCGAAATTTTTCTGCAACAAG 57.225 36.364 15.19 0.00 40.69 3.16
1716 1748 4.428209 TGCGAAATTTTTCTGCAACAAGA 58.572 34.783 15.19 0.00 40.69 3.02
1717 1749 4.267452 TGCGAAATTTTTCTGCAACAAGAC 59.733 37.500 15.19 0.00 40.69 3.01
1718 1750 4.318050 GCGAAATTTTTCTGCAACAAGACC 60.318 41.667 11.97 0.00 36.99 3.85
1719 1751 5.043248 CGAAATTTTTCTGCAACAAGACCT 58.957 37.500 0.00 0.00 35.07 3.85
1720 1752 5.173854 CGAAATTTTTCTGCAACAAGACCTC 59.826 40.000 0.00 0.00 35.07 3.85
1721 1753 5.596836 AATTTTTCTGCAACAAGACCTCA 57.403 34.783 0.00 0.00 0.00 3.86
1722 1754 4.637483 TTTTTCTGCAACAAGACCTCAG 57.363 40.909 0.00 0.00 0.00 3.35
1723 1755 3.281727 TTTCTGCAACAAGACCTCAGT 57.718 42.857 0.00 0.00 0.00 3.41
1724 1756 3.281727 TTCTGCAACAAGACCTCAGTT 57.718 42.857 0.00 0.00 0.00 3.16
1725 1757 4.415881 TTCTGCAACAAGACCTCAGTTA 57.584 40.909 0.00 0.00 0.00 2.24
1726 1758 3.728845 TCTGCAACAAGACCTCAGTTAC 58.271 45.455 0.00 0.00 0.00 2.50
1727 1759 3.133901 TCTGCAACAAGACCTCAGTTACA 59.866 43.478 0.00 0.00 0.00 2.41
1728 1760 3.876914 CTGCAACAAGACCTCAGTTACAA 59.123 43.478 0.00 0.00 0.00 2.41
1729 1761 4.265893 TGCAACAAGACCTCAGTTACAAA 58.734 39.130 0.00 0.00 0.00 2.83
1730 1762 4.702612 TGCAACAAGACCTCAGTTACAAAA 59.297 37.500 0.00 0.00 0.00 2.44
1731 1763 5.184096 TGCAACAAGACCTCAGTTACAAAAA 59.816 36.000 0.00 0.00 0.00 1.94
1751 1783 5.799681 AAAACATTGCAACAAAACCTCAG 57.200 34.783 0.00 0.00 0.00 3.35
1752 1784 4.470334 AACATTGCAACAAAACCTCAGT 57.530 36.364 0.00 0.00 0.00 3.41
1753 1785 4.470334 ACATTGCAACAAAACCTCAGTT 57.530 36.364 0.00 0.00 38.03 3.16
1754 1786 4.183101 ACATTGCAACAAAACCTCAGTTG 58.817 39.130 0.00 0.00 44.01 3.16
1760 1792 5.604010 CAACAAAACCTCAGTTGCAAAAA 57.396 34.783 0.00 0.00 36.59 1.94
1781 1813 6.592798 AAAAATTCTGCAACAAGACATGTG 57.407 33.333 1.15 0.00 42.99 3.21
1782 1814 4.924305 AATTCTGCAACAAGACATGTGT 57.076 36.364 1.15 0.00 42.99 3.72
1783 1815 4.924305 ATTCTGCAACAAGACATGTGTT 57.076 36.364 1.15 1.45 42.99 3.32
1788 1820 3.696281 CAACAAGACATGTGTTGCAGA 57.304 42.857 29.77 0.00 46.63 4.26
1789 1821 4.031418 CAACAAGACATGTGTTGCAGAA 57.969 40.909 29.77 0.00 46.63 3.02
1790 1822 4.422840 CAACAAGACATGTGTTGCAGAAA 58.577 39.130 29.77 0.00 46.63 2.52
1791 1823 4.924305 ACAAGACATGTGTTGCAGAAAT 57.076 36.364 29.77 11.24 41.93 2.17
1792 1824 5.266733 ACAAGACATGTGTTGCAGAAATT 57.733 34.783 29.77 10.59 41.93 1.82
1793 1825 6.389830 ACAAGACATGTGTTGCAGAAATTA 57.610 33.333 29.77 0.00 41.93 1.40
1794 1826 6.985117 ACAAGACATGTGTTGCAGAAATTAT 58.015 32.000 29.77 9.27 41.93 1.28
1795 1827 7.436118 ACAAGACATGTGTTGCAGAAATTATT 58.564 30.769 29.77 8.62 41.93 1.40
1796 1828 7.596248 ACAAGACATGTGTTGCAGAAATTATTC 59.404 33.333 29.77 0.00 41.93 1.75
1797 1829 7.458409 AGACATGTGTTGCAGAAATTATTCT 57.542 32.000 1.15 0.00 46.91 2.40
1810 1842 6.917533 AGAAATTATTCTGCAACAAGACCTG 58.082 36.000 0.00 0.00 44.25 4.00
1811 1843 6.491403 AGAAATTATTCTGCAACAAGACCTGT 59.509 34.615 0.00 0.00 44.25 4.00
1812 1844 5.633830 ATTATTCTGCAACAAGACCTGTG 57.366 39.130 0.00 0.00 38.67 3.66
1813 1845 2.418368 TTCTGCAACAAGACCTGTGT 57.582 45.000 0.00 0.00 38.67 3.72
1814 1846 2.418368 TCTGCAACAAGACCTGTGTT 57.582 45.000 0.00 0.00 38.67 3.32
1818 1850 2.937469 CAACAAGACCTGTGTTGCAA 57.063 45.000 7.04 0.00 46.63 4.08
1819 1851 3.441496 CAACAAGACCTGTGTTGCAAT 57.559 42.857 0.59 0.00 46.63 3.56
1820 1852 4.566545 CAACAAGACCTGTGTTGCAATA 57.433 40.909 0.59 0.00 46.63 1.90
1821 1853 4.290155 CAACAAGACCTGTGTTGCAATAC 58.710 43.478 18.46 18.46 46.63 1.89
1822 1854 3.820557 ACAAGACCTGTGTTGCAATACT 58.179 40.909 24.26 7.05 37.36 2.12
1823 1855 3.565482 ACAAGACCTGTGTTGCAATACTG 59.435 43.478 24.26 22.67 37.36 2.74
1824 1856 2.783135 AGACCTGTGTTGCAATACTGG 58.217 47.619 34.99 34.99 42.24 4.00
1825 1857 2.371841 AGACCTGTGTTGCAATACTGGA 59.628 45.455 39.79 18.28 40.10 3.86
1826 1858 2.744202 GACCTGTGTTGCAATACTGGAG 59.256 50.000 39.79 24.45 40.10 3.86
1827 1859 2.086869 CCTGTGTTGCAATACTGGAGG 58.913 52.381 34.21 24.51 40.10 4.30
1828 1860 1.470098 CTGTGTTGCAATACTGGAGGC 59.530 52.381 24.26 0.00 0.00 4.70
1829 1861 1.202867 TGTGTTGCAATACTGGAGGCA 60.203 47.619 24.26 2.36 0.00 4.75
1830 1862 1.200020 GTGTTGCAATACTGGAGGCAC 59.800 52.381 18.07 7.13 35.74 5.01
1831 1863 0.447801 GTTGCAATACTGGAGGCACG 59.552 55.000 0.59 0.00 35.74 5.34
1832 1864 0.036164 TTGCAATACTGGAGGCACGT 59.964 50.000 0.00 0.00 35.74 4.49
1833 1865 0.036164 TGCAATACTGGAGGCACGTT 59.964 50.000 0.00 0.00 0.00 3.99
1834 1866 0.727398 GCAATACTGGAGGCACGTTC 59.273 55.000 0.00 0.00 0.00 3.95
1835 1867 0.999406 CAATACTGGAGGCACGTTCG 59.001 55.000 0.00 0.00 0.00 3.95
1836 1868 0.108329 AATACTGGAGGCACGTTCGG 60.108 55.000 0.00 0.00 0.00 4.30
1837 1869 2.573609 ATACTGGAGGCACGTTCGGC 62.574 60.000 0.00 0.00 0.00 5.54
1845 1877 3.118454 CACGTTCGGCCGCTTGAT 61.118 61.111 23.51 0.84 0.00 2.57
1846 1878 3.118454 ACGTTCGGCCGCTTGATG 61.118 61.111 23.51 13.73 0.00 3.07
1847 1879 4.520846 CGTTCGGCCGCTTGATGC 62.521 66.667 23.51 3.84 38.57 3.91
1859 1891 3.325230 GCTTGATGCGGTAAATCTGAC 57.675 47.619 0.00 0.00 0.00 3.51
1860 1892 2.285834 GCTTGATGCGGTAAATCTGACG 60.286 50.000 0.00 0.00 0.00 4.35
1861 1893 1.934589 TGATGCGGTAAATCTGACGG 58.065 50.000 0.00 0.00 0.00 4.79
1862 1894 0.582005 GATGCGGTAAATCTGACGGC 59.418 55.000 0.00 0.00 41.91 5.68
1863 1895 0.178068 ATGCGGTAAATCTGACGGCT 59.822 50.000 0.00 0.00 42.03 5.52
1864 1896 0.036765 TGCGGTAAATCTGACGGCTT 60.037 50.000 0.00 0.00 42.03 4.35
1865 1897 0.373716 GCGGTAAATCTGACGGCTTG 59.626 55.000 0.00 0.00 39.36 4.01
1866 1898 0.373716 CGGTAAATCTGACGGCTTGC 59.626 55.000 0.00 0.00 0.00 4.01
1867 1899 1.448985 GGTAAATCTGACGGCTTGCA 58.551 50.000 0.00 0.00 0.00 4.08
1868 1900 1.810151 GGTAAATCTGACGGCTTGCAA 59.190 47.619 0.00 0.00 0.00 4.08
1869 1901 2.414161 GGTAAATCTGACGGCTTGCAAC 60.414 50.000 0.00 0.00 0.00 4.17
1870 1902 0.598065 AAATCTGACGGCTTGCAACC 59.402 50.000 0.00 1.17 0.00 3.77
1871 1903 1.244019 AATCTGACGGCTTGCAACCC 61.244 55.000 0.19 0.19 0.00 4.11
1878 1910 3.064324 GCTTGCAACCCGGCTGAT 61.064 61.111 0.00 0.00 34.04 2.90
1879 1911 3.056313 GCTTGCAACCCGGCTGATC 62.056 63.158 0.00 0.00 34.04 2.92
1880 1912 1.377725 CTTGCAACCCGGCTGATCT 60.378 57.895 0.00 0.00 34.04 2.75
1881 1913 0.962356 CTTGCAACCCGGCTGATCTT 60.962 55.000 0.00 0.00 34.04 2.40
1882 1914 0.539438 TTGCAACCCGGCTGATCTTT 60.539 50.000 0.00 0.00 34.04 2.52
1883 1915 0.539438 TGCAACCCGGCTGATCTTTT 60.539 50.000 0.00 0.00 34.04 2.27
1884 1916 1.271652 TGCAACCCGGCTGATCTTTTA 60.272 47.619 0.00 0.00 34.04 1.52
1885 1917 1.816224 GCAACCCGGCTGATCTTTTAA 59.184 47.619 0.00 0.00 0.00 1.52
1886 1918 2.230266 GCAACCCGGCTGATCTTTTAAA 59.770 45.455 0.00 0.00 0.00 1.52
1887 1919 3.305744 GCAACCCGGCTGATCTTTTAAAA 60.306 43.478 0.00 0.00 0.00 1.52
1888 1920 4.797933 GCAACCCGGCTGATCTTTTAAAAA 60.798 41.667 0.00 0.00 0.00 1.94
1889 1921 4.783764 ACCCGGCTGATCTTTTAAAAAG 57.216 40.909 0.00 0.00 0.00 2.27
1890 1922 4.403734 ACCCGGCTGATCTTTTAAAAAGA 58.596 39.130 0.00 0.00 0.00 2.52
1891 1923 5.016831 ACCCGGCTGATCTTTTAAAAAGAT 58.983 37.500 0.00 0.00 39.53 2.40
1899 1931 4.434713 TCTTTTAAAAAGATCAGCCGGC 57.565 40.909 21.89 21.89 0.00 6.13
1900 1932 2.911819 TTTAAAAAGATCAGCCGGCG 57.088 45.000 23.20 16.49 0.00 6.46
1901 1933 1.091537 TTAAAAAGATCAGCCGGCGG 58.908 50.000 24.35 24.35 0.00 6.13
1902 1934 0.250793 TAAAAAGATCAGCCGGCGGA 59.749 50.000 31.28 31.28 0.00 5.54
1903 1935 1.305930 AAAAAGATCAGCCGGCGGAC 61.306 55.000 31.76 23.05 0.00 4.79
1904 1936 4.514577 AAGATCAGCCGGCGGACG 62.515 66.667 31.76 19.79 43.80 4.79
1922 1954 4.848685 CGTAGCACGCCCCTTAAT 57.151 55.556 0.00 0.00 33.65 1.40
1927 1959 3.001939 CGTAGCACGCCCCTTAATTAAAG 59.998 47.826 0.00 0.00 33.65 1.85
2029 2061 4.960938 TGTGCATAGAGCTATAGGGTTTG 58.039 43.478 1.83 0.00 45.94 2.93
2150 2196 5.163663 TGCAATTATTGTTTGTCGATCCCTC 60.164 40.000 6.81 0.00 0.00 4.30
2151 2197 5.066505 GCAATTATTGTTTGTCGATCCCTCT 59.933 40.000 6.81 0.00 0.00 3.69
2180 2226 9.917129 TCGTCTATCTTACTTTTGTTCACATAA 57.083 29.630 0.00 0.00 0.00 1.90
2204 2250 1.270550 CTGTTGGCAGTGAACAATCCC 59.729 52.381 0.00 0.00 37.92 3.85
2288 2334 9.841295 AACTATAAAGTGTAAGTCCTTTCACAA 57.159 29.630 16.00 4.94 41.41 3.33
2310 2356 4.396357 TTTTGGTTATCACCTGTCCCAT 57.604 40.909 0.00 0.00 44.61 4.00
2364 2426 8.870075 ATTTTGATTAATATGCTACTCCCTCC 57.130 34.615 0.00 0.00 0.00 4.30
2365 2427 5.661056 TGATTAATATGCTACTCCCTCCG 57.339 43.478 0.00 0.00 0.00 4.63
2366 2428 5.084519 TGATTAATATGCTACTCCCTCCGT 58.915 41.667 0.00 0.00 0.00 4.69
2367 2429 5.185249 TGATTAATATGCTACTCCCTCCGTC 59.815 44.000 0.00 0.00 0.00 4.79
2368 2430 1.926108 ATATGCTACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
2369 2431 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
2370 2432 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
2371 2433 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
2372 2434 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
2373 2435 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2374 2436 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2375 2437 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2376 2438 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2377 2439 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2378 2440 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2379 2441 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2380 2442 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2381 2443 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2382 2444 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2383 2445 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2384 2446 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2385 2447 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2386 2448 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2387 2449 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2388 2450 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2389 2451 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2390 2452 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2391 2453 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2392 2454 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2393 2455 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2394 2456 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2400 2462 7.772332 AGTGTCTCAACTTTGTACTAACTTG 57.228 36.000 0.00 0.00 0.00 3.16
2401 2463 7.328737 AGTGTCTCAACTTTGTACTAACTTGT 58.671 34.615 8.43 0.00 0.00 3.16
2402 2464 8.472413 AGTGTCTCAACTTTGTACTAACTTGTA 58.528 33.333 8.43 0.00 0.00 2.41
2403 2465 8.538039 GTGTCTCAACTTTGTACTAACTTGTAC 58.462 37.037 8.43 0.00 42.10 2.90
2404 2466 8.472413 TGTCTCAACTTTGTACTAACTTGTACT 58.528 33.333 6.41 0.00 42.22 2.73
2405 2467 9.956720 GTCTCAACTTTGTACTAACTTGTACTA 57.043 33.333 6.41 0.00 42.22 1.82
2418 2480 9.140874 ACTAACTTGTACTAAGGTTAAGACACT 57.859 33.333 9.05 0.00 0.00 3.55
2419 2481 9.978044 CTAACTTGTACTAAGGTTAAGACACTT 57.022 33.333 9.05 0.00 0.00 3.16
2425 2487 9.715121 TGTACTAAGGTTAAGACACTTATTTGG 57.285 33.333 0.00 0.00 0.00 3.28
2426 2488 9.159364 GTACTAAGGTTAAGACACTTATTTGGG 57.841 37.037 0.00 0.00 0.00 4.12
2427 2489 7.981142 ACTAAGGTTAAGACACTTATTTGGGA 58.019 34.615 0.00 0.00 0.00 4.37
2428 2490 7.881751 ACTAAGGTTAAGACACTTATTTGGGAC 59.118 37.037 0.00 0.00 0.00 4.46
2429 2491 5.243207 AGGTTAAGACACTTATTTGGGACG 58.757 41.667 0.00 0.00 0.00 4.79
2430 2492 4.393990 GGTTAAGACACTTATTTGGGACGG 59.606 45.833 0.00 0.00 0.00 4.79
2431 2493 5.240121 GTTAAGACACTTATTTGGGACGGA 58.760 41.667 0.00 0.00 0.00 4.69
2432 2494 3.611766 AGACACTTATTTGGGACGGAG 57.388 47.619 0.00 0.00 0.00 4.63
2433 2495 2.236395 AGACACTTATTTGGGACGGAGG 59.764 50.000 0.00 0.00 0.00 4.30
2434 2496 1.280998 ACACTTATTTGGGACGGAGGG 59.719 52.381 0.00 0.00 0.00 4.30
2435 2497 1.557832 CACTTATTTGGGACGGAGGGA 59.442 52.381 0.00 0.00 0.00 4.20
2436 2498 1.838077 ACTTATTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2437 2499 1.838077 CTTATTTGGGACGGAGGGAGT 59.162 52.381 0.00 0.00 0.00 3.85
2438 2500 1.200519 TATTTGGGACGGAGGGAGTG 58.799 55.000 0.00 0.00 0.00 3.51
2439 2501 2.198304 ATTTGGGACGGAGGGAGTGC 62.198 60.000 0.00 0.00 0.00 4.40
2440 2502 3.846405 TTGGGACGGAGGGAGTGCT 62.846 63.158 0.00 0.00 0.00 4.40
2512 2574 8.352942 AGAACTCATGAAACTAATTTGGTGTTC 58.647 33.333 0.00 2.43 31.62 3.18
2919 3385 9.036671 ACAAAGGTCAAATTTTTAATGGTTACG 57.963 29.630 0.00 0.00 0.00 3.18
2981 3447 9.944663 TGTAAGCTCTTAAACTGTTTATTTGTG 57.055 29.630 13.29 9.02 0.00 3.33
3038 3504 6.406400 CCCTCGTGTATCTCTCTTCTTTCATT 60.406 42.308 0.00 0.00 0.00 2.57
3051 3517 5.539574 TCTTCTTTCATTCAATGGGAAAGCA 59.460 36.000 13.88 6.61 44.38 3.91
3098 3564 1.489230 ACTTCCGTCCTGTTTCTTGGT 59.511 47.619 0.00 0.00 0.00 3.67
3327 3798 0.179097 GAGCCTTCTCACGGTCATCC 60.179 60.000 0.00 0.00 39.16 3.51
3508 3979 4.785453 CCTTCGCCTGAGCACCCC 62.785 72.222 0.00 0.00 39.83 4.95
3650 4127 5.528690 TGGCTGTTATTGATTACTGAGCATC 59.471 40.000 0.00 0.00 0.00 3.91
3736 4214 1.103398 GTCTGCTTGTGTGGGCTGTT 61.103 55.000 0.00 0.00 0.00 3.16
3753 4231 0.895559 GTTTCCTGCCCCTCCTGTTG 60.896 60.000 0.00 0.00 0.00 3.33
3834 4312 4.081142 TGAGTTCCAGTGAAAGTTGAGTGA 60.081 41.667 0.00 0.00 30.79 3.41
3835 4313 4.843728 AGTTCCAGTGAAAGTTGAGTGAA 58.156 39.130 0.00 0.00 30.79 3.18
3839 4317 3.304928 CCAGTGAAAGTTGAGTGAATGGC 60.305 47.826 0.00 0.00 0.00 4.40
3841 4319 3.817647 AGTGAAAGTTGAGTGAATGGCTC 59.182 43.478 0.00 0.00 0.00 4.70
3934 4412 0.468029 CTGGCTCCTCTCCTCTCCTC 60.468 65.000 0.00 0.00 0.00 3.71
3935 4413 0.923729 TGGCTCCTCTCCTCTCCTCT 60.924 60.000 0.00 0.00 0.00 3.69
3950 4428 3.134262 TCTCCTCTCTGCCTTTCATCATG 59.866 47.826 0.00 0.00 0.00 3.07
3999 4477 4.780815 CACCTGCAACTCCCATAATCTTA 58.219 43.478 0.00 0.00 0.00 2.10
4010 4488 5.036916 TCCCATAATCTTAGACCCACTTGT 58.963 41.667 0.00 0.00 0.00 3.16
4022 4501 6.293004 AGACCCACTTGTTTCAAATCAAAA 57.707 33.333 0.00 0.00 0.00 2.44
4124 4606 8.792830 TTTTGATACAGAGGGAGTTAATCTTG 57.207 34.615 0.00 0.00 0.00 3.02
4179 4661 3.501349 TGAGCCTGACTTAGACTTGACT 58.499 45.455 0.00 0.00 0.00 3.41
4220 4702 1.845809 GCCAGCAAGACAACTCCACG 61.846 60.000 0.00 0.00 0.00 4.94
4272 4754 5.220605 GGACGTGCAGAACATTATCCTAAAC 60.221 44.000 0.63 0.00 0.00 2.01
4342 4824 1.376543 ACCTGCGATGCTTTCTCATG 58.623 50.000 0.00 0.00 0.00 3.07
4364 4846 4.041049 GTCAGACTAGTCGAAGCATGATG 58.959 47.826 17.07 6.91 34.09 3.07
4404 4888 3.495100 CCATTTTCTCCTCGGATTCGGAT 60.495 47.826 0.00 0.00 36.95 4.18
4412 4896 3.570975 TCCTCGGATTCGGATCGATTAAA 59.429 43.478 0.00 0.00 35.23 1.52
4419 4903 6.534934 GGATTCGGATCGATTAAAACATAGC 58.465 40.000 0.00 0.00 35.23 2.97
4421 4905 7.148407 GGATTCGGATCGATTAAAACATAGCAT 60.148 37.037 0.00 0.00 35.23 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.862541 AGCAAGCAACCACACTGATAA 58.137 42.857 0.00 0.00 0.00 1.75
1 2 2.566833 AGCAAGCAACCACACTGATA 57.433 45.000 0.00 0.00 0.00 2.15
2 3 2.566833 TAGCAAGCAACCACACTGAT 57.433 45.000 0.00 0.00 0.00 2.90
3 4 2.340210 TTAGCAAGCAACCACACTGA 57.660 45.000 0.00 0.00 0.00 3.41
25 26 6.272822 ACAAATTTCCTCAAATCCTACTGC 57.727 37.500 0.00 0.00 30.37 4.40
35 36 7.014230 AGCAACTAAAGCTACAAATTTCCTCAA 59.986 33.333 0.00 0.00 41.32 3.02
36 37 6.490040 AGCAACTAAAGCTACAAATTTCCTCA 59.510 34.615 0.00 0.00 41.32 3.86
37 38 6.803807 CAGCAACTAAAGCTACAAATTTCCTC 59.196 38.462 0.00 0.00 41.14 3.71
39 40 6.447162 ACAGCAACTAAAGCTACAAATTTCC 58.553 36.000 0.00 0.00 41.14 3.13
56 57 8.146479 TGATAATTGACTATGATGACAGCAAC 57.854 34.615 0.00 0.00 0.00 4.17
96 97 2.119495 AGGCGTTATCTTCCCAGATGT 58.881 47.619 0.00 0.00 40.28 3.06
100 101 1.017387 GCAAGGCGTTATCTTCCCAG 58.983 55.000 0.00 0.00 0.00 4.45
103 104 1.810151 TGTTGCAAGGCGTTATCTTCC 59.190 47.619 0.00 0.00 0.00 3.46
113 114 5.528690 TCATATACTCAATCTGTTGCAAGGC 59.471 40.000 0.00 0.00 35.26 4.35
182 183 0.905337 AGACAGAGTACAGGCACCCC 60.905 60.000 0.00 0.00 0.00 4.95
183 184 0.977395 AAGACAGAGTACAGGCACCC 59.023 55.000 0.00 0.00 0.00 4.61
230 243 2.571653 AGCACTTGCAATAGGACACCTA 59.428 45.455 0.00 0.00 45.16 3.08
231 244 1.352352 AGCACTTGCAATAGGACACCT 59.648 47.619 0.00 0.00 45.16 4.00
264 277 1.288188 TGAATCCTGGACTGGATGCA 58.712 50.000 13.23 13.23 46.92 3.96
316 329 3.696051 AGAGTGGAGTAATTTACGGCGTA 59.304 43.478 16.97 16.97 0.00 4.42
365 378 3.433343 TGCATCCATGACCTGACAAAAT 58.567 40.909 0.00 0.00 0.00 1.82
400 415 6.170506 ACAAGAATTCCTGCGTATGAAACTA 58.829 36.000 3.88 0.00 0.00 2.24
490 507 9.755804 TCATAATAGTGCTTATTCTGTTCTCAG 57.244 33.333 0.00 0.00 42.54 3.35
538 555 5.756195 TCACCAATCTTGAAAAGTCACAG 57.244 39.130 0.00 0.00 46.34 3.66
543 560 8.585471 ATGTGATATCACCAATCTTGAAAAGT 57.415 30.769 28.64 0.23 44.70 2.66
633 650 8.623903 GCAAAAGAAATCATATCACAGATACCA 58.376 33.333 0.00 0.00 0.00 3.25
634 651 8.078596 GGCAAAAGAAATCATATCACAGATACC 58.921 37.037 0.00 0.00 0.00 2.73
684 703 6.227522 TCAACAGATACCGAACAAATTCAGA 58.772 36.000 0.00 0.00 34.14 3.27
685 704 6.480524 TCAACAGATACCGAACAAATTCAG 57.519 37.500 0.00 0.00 34.14 3.02
738 766 3.764972 TCCCATGAACATACGTCAGTACA 59.235 43.478 0.00 0.00 35.39 2.90
746 774 2.159296 TCAGACGTCCCATGAACATACG 60.159 50.000 13.01 6.93 39.37 3.06
747 775 3.520290 TCAGACGTCCCATGAACATAC 57.480 47.619 13.01 0.00 0.00 2.39
786 814 1.089112 CGCACCAATCTTGATGCAGA 58.911 50.000 9.80 0.00 37.97 4.26
1117 1145 3.492756 GCATCCGTAAAGAAGATCAGCTC 59.507 47.826 0.00 0.00 0.00 4.09
1295 1326 1.466167 CTCGGTGCATTTGACAGGAAG 59.534 52.381 0.00 0.00 0.00 3.46
1333 1364 5.756833 CGAATGATGATTTGACAGGAGATGA 59.243 40.000 0.00 0.00 0.00 2.92
1356 1387 6.090358 ACAACAAGATACCGATGACTTTAACG 59.910 38.462 0.00 0.00 0.00 3.18
1429 1460 3.461773 TGGCTGTAGGGCTCGAGC 61.462 66.667 29.38 29.38 41.48 5.03
1435 1466 4.715523 TTGGCGTGGCTGTAGGGC 62.716 66.667 0.00 0.00 41.27 5.19
1472 1504 1.962412 TTGCAATTAACTTCTGCGCG 58.038 45.000 0.00 0.00 38.97 6.86
1473 1505 4.908966 AAATTGCAATTAACTTCTGCGC 57.091 36.364 24.35 0.00 38.97 6.09
1526 1558 0.537188 ACCACGCTTATCAGGACCAG 59.463 55.000 0.00 0.00 0.00 4.00
1527 1559 0.249120 CACCACGCTTATCAGGACCA 59.751 55.000 0.00 0.00 0.00 4.02
1528 1560 0.462047 CCACCACGCTTATCAGGACC 60.462 60.000 0.00 0.00 0.00 4.46
1540 1572 0.677731 AGATGGATGCAACCACCACG 60.678 55.000 19.07 0.00 43.03 4.94
1660 1692 0.940991 GCAAAACGTAGACCCGTCGT 60.941 55.000 0.00 0.00 40.85 4.34
1661 1693 0.940519 TGCAAAACGTAGACCCGTCG 60.941 55.000 0.00 0.00 40.85 5.12
1666 1698 4.417506 AGTTTTGTTGCAAAACGTAGACC 58.582 39.130 23.16 6.38 43.01 3.85
1667 1699 6.384178 AAAGTTTTGTTGCAAAACGTAGAC 57.616 33.333 23.16 7.46 43.01 2.59
1668 1700 6.864165 AGAAAAGTTTTGTTGCAAAACGTAGA 59.136 30.769 23.16 0.00 43.01 2.59
1669 1701 7.044589 AGAAAAGTTTTGTTGCAAAACGTAG 57.955 32.000 23.16 0.00 43.01 3.51
1671 1703 5.915812 AGAAAAGTTTTGTTGCAAAACGT 57.084 30.435 23.16 19.71 43.01 3.99
1672 1704 5.057887 GCAAGAAAAGTTTTGTTGCAAAACG 59.942 36.000 38.12 17.03 43.01 3.60
1673 1705 5.057887 CGCAAGAAAAGTTTTGTTGCAAAAC 59.942 36.000 39.56 23.19 38.92 2.43
1674 1706 5.142962 CGCAAGAAAAGTTTTGTTGCAAAA 58.857 33.333 39.56 0.00 38.92 2.44
1676 1708 4.319235 CGCAAGAAAAGTTTTGTTGCAA 57.681 36.364 39.56 0.00 38.92 4.08
1692 1724 4.775440 TGTTGCAGAAAAATTTCGCAAG 57.225 36.364 24.41 10.27 46.37 4.01
1693 1725 4.867047 TCTTGTTGCAGAAAAATTTCGCAA 59.133 33.333 22.13 22.13 45.14 4.85
1695 1727 4.318050 GGTCTTGTTGCAGAAAAATTTCGC 60.318 41.667 12.51 12.51 41.92 4.70
1697 1729 6.042143 TGAGGTCTTGTTGCAGAAAAATTTC 58.958 36.000 0.00 0.00 37.45 2.17
1698 1730 5.976458 TGAGGTCTTGTTGCAGAAAAATTT 58.024 33.333 0.00 0.00 0.00 1.82
1699 1731 5.127682 ACTGAGGTCTTGTTGCAGAAAAATT 59.872 36.000 0.00 0.00 0.00 1.82
1700 1732 4.646492 ACTGAGGTCTTGTTGCAGAAAAAT 59.354 37.500 0.00 0.00 0.00 1.82
1701 1733 4.016444 ACTGAGGTCTTGTTGCAGAAAAA 58.984 39.130 0.00 0.00 0.00 1.94
1702 1734 3.620488 ACTGAGGTCTTGTTGCAGAAAA 58.380 40.909 0.00 0.00 0.00 2.29
1703 1735 3.281727 ACTGAGGTCTTGTTGCAGAAA 57.718 42.857 0.00 0.00 0.00 2.52
1704 1736 3.281727 AACTGAGGTCTTGTTGCAGAA 57.718 42.857 0.00 0.00 0.00 3.02
1705 1737 3.133901 TGTAACTGAGGTCTTGTTGCAGA 59.866 43.478 0.00 0.00 32.95 4.26
1706 1738 3.466836 TGTAACTGAGGTCTTGTTGCAG 58.533 45.455 0.00 0.00 32.95 4.41
1707 1739 3.552132 TGTAACTGAGGTCTTGTTGCA 57.448 42.857 0.00 0.00 34.84 4.08
1708 1740 4.893424 TTTGTAACTGAGGTCTTGTTGC 57.107 40.909 0.00 0.00 0.00 4.17
1728 1760 5.704978 ACTGAGGTTTTGTTGCAATGTTTTT 59.295 32.000 0.59 0.00 0.00 1.94
1729 1761 5.244755 ACTGAGGTTTTGTTGCAATGTTTT 58.755 33.333 0.59 0.00 0.00 2.43
1730 1762 4.831107 ACTGAGGTTTTGTTGCAATGTTT 58.169 34.783 0.59 0.00 0.00 2.83
1731 1763 4.470334 ACTGAGGTTTTGTTGCAATGTT 57.530 36.364 0.59 0.00 0.00 2.71
1732 1764 4.183101 CAACTGAGGTTTTGTTGCAATGT 58.817 39.130 0.59 0.00 35.39 2.71
1733 1765 4.782252 CAACTGAGGTTTTGTTGCAATG 57.218 40.909 0.59 0.00 35.39 2.82
1738 1770 5.604010 TTTTTGCAACTGAGGTTTTGTTG 57.396 34.783 0.00 0.00 42.55 3.33
1758 1790 6.108015 ACACATGTCTTGTTGCAGAATTTTT 58.892 32.000 0.00 0.00 36.00 1.94
1759 1791 5.663456 ACACATGTCTTGTTGCAGAATTTT 58.337 33.333 0.00 0.00 36.00 1.82
1760 1792 5.266733 ACACATGTCTTGTTGCAGAATTT 57.733 34.783 0.00 0.00 36.00 1.82
1761 1793 4.924305 ACACATGTCTTGTTGCAGAATT 57.076 36.364 0.00 0.00 36.00 2.17
1762 1794 4.613944 CAACACATGTCTTGTTGCAGAAT 58.386 39.130 12.95 0.00 45.36 2.40
1763 1795 4.031418 CAACACATGTCTTGTTGCAGAA 57.969 40.909 12.95 0.00 45.36 3.02
1764 1796 3.696281 CAACACATGTCTTGTTGCAGA 57.304 42.857 12.95 0.00 45.36 4.26
1769 1801 4.717233 TTTCTGCAACACATGTCTTGTT 57.283 36.364 14.29 5.18 36.00 2.83
1770 1802 4.924305 ATTTCTGCAACACATGTCTTGT 57.076 36.364 14.29 0.00 39.91 3.16
1771 1803 7.811236 AGAATAATTTCTGCAACACATGTCTTG 59.189 33.333 9.28 9.28 40.74 3.02
1772 1804 7.889469 AGAATAATTTCTGCAACACATGTCTT 58.111 30.769 0.00 0.00 40.74 3.01
1773 1805 7.458409 AGAATAATTTCTGCAACACATGTCT 57.542 32.000 0.00 0.00 40.74 3.41
1786 1818 6.491403 ACAGGTCTTGTTGCAGAATAATTTCT 59.509 34.615 0.00 0.00 38.72 2.52
1787 1819 6.583806 CACAGGTCTTGTTGCAGAATAATTTC 59.416 38.462 0.00 0.00 38.16 2.17
1788 1820 6.040842 ACACAGGTCTTGTTGCAGAATAATTT 59.959 34.615 0.00 0.00 38.16 1.82
1789 1821 5.536161 ACACAGGTCTTGTTGCAGAATAATT 59.464 36.000 0.00 0.00 38.16 1.40
1790 1822 5.072741 ACACAGGTCTTGTTGCAGAATAAT 58.927 37.500 0.00 0.00 38.16 1.28
1791 1823 4.460263 ACACAGGTCTTGTTGCAGAATAA 58.540 39.130 0.00 0.00 38.16 1.40
1792 1824 4.085357 ACACAGGTCTTGTTGCAGAATA 57.915 40.909 0.00 0.00 38.16 1.75
1793 1825 2.936202 ACACAGGTCTTGTTGCAGAAT 58.064 42.857 0.00 0.00 38.16 2.40
1794 1826 2.418368 ACACAGGTCTTGTTGCAGAA 57.582 45.000 0.00 0.00 38.16 3.02
1795 1827 2.016318 CAACACAGGTCTTGTTGCAGA 58.984 47.619 2.50 0.00 45.36 4.26
1796 1828 2.480224 CAACACAGGTCTTGTTGCAG 57.520 50.000 2.50 0.00 45.36 4.41
1800 1832 4.036734 CAGTATTGCAACACAGGTCTTGTT 59.963 41.667 11.03 0.00 38.16 2.83
1801 1833 3.565482 CAGTATTGCAACACAGGTCTTGT 59.435 43.478 11.03 0.00 41.94 3.16
1802 1834 3.058016 CCAGTATTGCAACACAGGTCTTG 60.058 47.826 11.03 0.00 0.00 3.02
1803 1835 3.149196 CCAGTATTGCAACACAGGTCTT 58.851 45.455 11.03 0.00 0.00 3.01
1804 1836 2.371841 TCCAGTATTGCAACACAGGTCT 59.628 45.455 17.65 0.00 0.00 3.85
1805 1837 2.744202 CTCCAGTATTGCAACACAGGTC 59.256 50.000 17.65 0.00 0.00 3.85
1806 1838 2.553028 CCTCCAGTATTGCAACACAGGT 60.553 50.000 17.65 0.00 0.00 4.00
1807 1839 2.086869 CCTCCAGTATTGCAACACAGG 58.913 52.381 12.78 12.78 0.00 4.00
1808 1840 1.470098 GCCTCCAGTATTGCAACACAG 59.530 52.381 11.03 1.37 0.00 3.66
1809 1841 1.202867 TGCCTCCAGTATTGCAACACA 60.203 47.619 11.03 0.00 0.00 3.72
1810 1842 1.200020 GTGCCTCCAGTATTGCAACAC 59.800 52.381 0.00 0.00 35.16 3.32
1811 1843 1.533625 GTGCCTCCAGTATTGCAACA 58.466 50.000 0.00 0.00 35.16 3.33
1812 1844 0.447801 CGTGCCTCCAGTATTGCAAC 59.552 55.000 0.00 0.00 35.16 4.17
1813 1845 0.036164 ACGTGCCTCCAGTATTGCAA 59.964 50.000 0.00 0.00 35.16 4.08
1814 1846 0.036164 AACGTGCCTCCAGTATTGCA 59.964 50.000 0.00 0.00 0.00 4.08
1815 1847 0.727398 GAACGTGCCTCCAGTATTGC 59.273 55.000 0.00 0.00 0.00 3.56
1816 1848 0.999406 CGAACGTGCCTCCAGTATTG 59.001 55.000 0.00 0.00 0.00 1.90
1817 1849 0.108329 CCGAACGTGCCTCCAGTATT 60.108 55.000 0.00 0.00 0.00 1.89
1818 1850 1.515954 CCGAACGTGCCTCCAGTAT 59.484 57.895 0.00 0.00 0.00 2.12
1819 1851 2.967397 CCGAACGTGCCTCCAGTA 59.033 61.111 0.00 0.00 0.00 2.74
1820 1852 4.681978 GCCGAACGTGCCTCCAGT 62.682 66.667 0.00 0.00 0.00 4.00
1828 1860 3.118454 ATCAAGCGGCCGAACGTG 61.118 61.111 33.48 20.48 35.98 4.49
1829 1861 3.118454 CATCAAGCGGCCGAACGT 61.118 61.111 33.48 7.49 35.98 3.99
1830 1862 4.520846 GCATCAAGCGGCCGAACG 62.521 66.667 33.48 16.02 0.00 3.95
1839 1871 2.285834 CGTCAGATTTACCGCATCAAGC 60.286 50.000 0.00 0.00 40.87 4.01
1840 1872 2.285220 CCGTCAGATTTACCGCATCAAG 59.715 50.000 0.00 0.00 0.00 3.02
1841 1873 2.276201 CCGTCAGATTTACCGCATCAA 58.724 47.619 0.00 0.00 0.00 2.57
1842 1874 1.934589 CCGTCAGATTTACCGCATCA 58.065 50.000 0.00 0.00 0.00 3.07
1843 1875 0.582005 GCCGTCAGATTTACCGCATC 59.418 55.000 0.00 0.00 0.00 3.91
1844 1876 0.178068 AGCCGTCAGATTTACCGCAT 59.822 50.000 0.00 0.00 0.00 4.73
1845 1877 0.036765 AAGCCGTCAGATTTACCGCA 60.037 50.000 0.00 0.00 0.00 5.69
1846 1878 0.373716 CAAGCCGTCAGATTTACCGC 59.626 55.000 0.00 0.00 0.00 5.68
1847 1879 0.373716 GCAAGCCGTCAGATTTACCG 59.626 55.000 0.00 0.00 0.00 4.02
1848 1880 1.448985 TGCAAGCCGTCAGATTTACC 58.551 50.000 0.00 0.00 0.00 2.85
1849 1881 2.414161 GGTTGCAAGCCGTCAGATTTAC 60.414 50.000 17.84 0.00 0.00 2.01
1850 1882 1.810151 GGTTGCAAGCCGTCAGATTTA 59.190 47.619 17.84 0.00 0.00 1.40
1851 1883 0.598065 GGTTGCAAGCCGTCAGATTT 59.402 50.000 17.84 0.00 0.00 2.17
1852 1884 1.244019 GGGTTGCAAGCCGTCAGATT 61.244 55.000 30.27 0.00 36.76 2.40
1853 1885 1.675641 GGGTTGCAAGCCGTCAGAT 60.676 57.895 30.27 0.00 36.76 2.90
1854 1886 2.281484 GGGTTGCAAGCCGTCAGA 60.281 61.111 30.27 0.00 36.76 3.27
1861 1893 3.056313 GATCAGCCGGGTTGCAAGC 62.056 63.158 20.26 20.26 0.00 4.01
1862 1894 0.962356 AAGATCAGCCGGGTTGCAAG 60.962 55.000 1.64 0.00 0.00 4.01
1863 1895 0.539438 AAAGATCAGCCGGGTTGCAA 60.539 50.000 1.64 0.00 0.00 4.08
1864 1896 0.539438 AAAAGATCAGCCGGGTTGCA 60.539 50.000 1.64 0.00 0.00 4.08
1865 1897 1.459450 TAAAAGATCAGCCGGGTTGC 58.541 50.000 1.64 0.00 0.00 4.17
1866 1898 4.513198 TTTTAAAAGATCAGCCGGGTTG 57.487 40.909 1.64 4.25 0.00 3.77
1867 1899 4.830600 TCTTTTTAAAAGATCAGCCGGGTT 59.169 37.500 15.24 0.00 0.00 4.11
1868 1900 4.403734 TCTTTTTAAAAGATCAGCCGGGT 58.596 39.130 15.24 0.00 0.00 5.28
1869 1901 5.582689 ATCTTTTTAAAAGATCAGCCGGG 57.417 39.130 22.74 0.00 31.78 5.73
1877 1909 4.438744 CGCCGGCTGATCTTTTTAAAAGAT 60.439 41.667 26.87 26.87 39.53 2.40
1878 1910 3.119990 CGCCGGCTGATCTTTTTAAAAGA 60.120 43.478 26.68 20.42 0.00 2.52
1879 1911 3.171277 CGCCGGCTGATCTTTTTAAAAG 58.829 45.455 26.68 10.89 0.00 2.27
1880 1912 2.094957 CCGCCGGCTGATCTTTTTAAAA 60.095 45.455 26.68 0.00 0.00 1.52
1881 1913 1.470890 CCGCCGGCTGATCTTTTTAAA 59.529 47.619 26.68 0.00 0.00 1.52
1882 1914 1.091537 CCGCCGGCTGATCTTTTTAA 58.908 50.000 26.68 0.00 0.00 1.52
1883 1915 0.250793 TCCGCCGGCTGATCTTTTTA 59.749 50.000 26.68 0.00 0.00 1.52
1884 1916 1.002624 TCCGCCGGCTGATCTTTTT 60.003 52.632 26.68 0.00 0.00 1.94
1885 1917 1.745489 GTCCGCCGGCTGATCTTTT 60.745 57.895 26.68 0.00 0.00 2.27
1886 1918 2.125106 GTCCGCCGGCTGATCTTT 60.125 61.111 26.68 0.00 0.00 2.52
1887 1919 4.514577 CGTCCGCCGGCTGATCTT 62.515 66.667 26.68 0.00 0.00 2.40
1905 1937 2.228138 TAATTAAGGGGCGTGCTACG 57.772 50.000 4.61 4.61 45.88 3.51
1906 1938 4.547406 CTTTAATTAAGGGGCGTGCTAC 57.453 45.455 0.00 0.00 0.00 3.58
1922 1954 7.757611 TGGAATTTGTAACTACTCCCCTTTAA 58.242 34.615 0.00 0.00 0.00 1.52
1927 1959 5.506708 ACATGGAATTTGTAACTACTCCCC 58.493 41.667 0.00 0.00 0.00 4.81
2029 2061 2.202987 CCATCGGGACTCAGCTGC 60.203 66.667 9.47 0.00 35.59 5.25
2151 2197 9.917129 TGTGAACAAAAGTAAGATAGACGATAA 57.083 29.630 0.00 0.00 0.00 1.75
2204 2250 3.876914 TCAGTGTAGGTGCACTCTTTTTG 59.123 43.478 17.98 9.35 46.81 2.44
2288 2334 4.396357 TGGGACAGGTGATAACCAAAAT 57.604 40.909 0.85 0.00 0.00 1.82
2310 2356 5.751990 GGTCAAGACTTAAAGAAGTTCGACA 59.248 40.000 0.00 0.00 46.23 4.35
2359 2421 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2360 2422 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2361 2423 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2362 2424 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2363 2425 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2364 2426 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2365 2427 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2366 2428 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2367 2429 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2368 2430 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2374 2436 9.309516 CAAGTTAGTACAAAGTTGAGACACTTA 57.690 33.333 0.00 0.00 40.66 2.24
2375 2437 7.822822 ACAAGTTAGTACAAAGTTGAGACACTT 59.177 33.333 10.30 0.98 40.66 3.16
2376 2438 7.328737 ACAAGTTAGTACAAAGTTGAGACACT 58.671 34.615 10.30 0.00 40.66 3.55
2377 2439 7.535489 ACAAGTTAGTACAAAGTTGAGACAC 57.465 36.000 10.30 0.00 40.66 3.67
2378 2440 8.472413 AGTACAAGTTAGTACAAAGTTGAGACA 58.528 33.333 10.30 0.00 45.25 3.41
2379 2441 8.868635 AGTACAAGTTAGTACAAAGTTGAGAC 57.131 34.615 10.30 7.92 45.25 3.36
2382 2444 9.754382 CCTTAGTACAAGTTAGTACAAAGTTGA 57.246 33.333 10.30 0.00 45.25 3.18
2383 2445 9.538508 ACCTTAGTACAAGTTAGTACAAAGTTG 57.461 33.333 14.14 3.28 45.25 3.16
2392 2454 9.140874 AGTGTCTTAACCTTAGTACAAGTTAGT 57.859 33.333 0.00 0.00 0.00 2.24
2393 2455 9.978044 AAGTGTCTTAACCTTAGTACAAGTTAG 57.022 33.333 0.00 0.00 0.00 2.34
2399 2461 9.715121 CCAAATAAGTGTCTTAACCTTAGTACA 57.285 33.333 0.00 0.00 0.00 2.90
2400 2462 9.159364 CCCAAATAAGTGTCTTAACCTTAGTAC 57.841 37.037 0.00 0.00 0.00 2.73
2401 2463 9.103582 TCCCAAATAAGTGTCTTAACCTTAGTA 57.896 33.333 0.00 0.00 0.00 1.82
2402 2464 7.881751 GTCCCAAATAAGTGTCTTAACCTTAGT 59.118 37.037 0.00 0.00 0.00 2.24
2403 2465 7.064253 CGTCCCAAATAAGTGTCTTAACCTTAG 59.936 40.741 0.00 0.00 0.00 2.18
2404 2466 6.875195 CGTCCCAAATAAGTGTCTTAACCTTA 59.125 38.462 0.00 0.00 0.00 2.69
2405 2467 5.704053 CGTCCCAAATAAGTGTCTTAACCTT 59.296 40.000 0.00 0.00 0.00 3.50
2406 2468 5.243207 CGTCCCAAATAAGTGTCTTAACCT 58.757 41.667 0.00 0.00 0.00 3.50
2407 2469 4.393990 CCGTCCCAAATAAGTGTCTTAACC 59.606 45.833 0.00 0.00 0.00 2.85
2408 2470 5.240121 TCCGTCCCAAATAAGTGTCTTAAC 58.760 41.667 0.00 0.00 0.00 2.01
2409 2471 5.484715 CTCCGTCCCAAATAAGTGTCTTAA 58.515 41.667 0.00 0.00 0.00 1.85
2410 2472 4.081309 CCTCCGTCCCAAATAAGTGTCTTA 60.081 45.833 0.00 0.00 0.00 2.10
2411 2473 3.307480 CCTCCGTCCCAAATAAGTGTCTT 60.307 47.826 0.00 0.00 0.00 3.01
2412 2474 2.236395 CCTCCGTCCCAAATAAGTGTCT 59.764 50.000 0.00 0.00 0.00 3.41
2413 2475 2.629051 CCTCCGTCCCAAATAAGTGTC 58.371 52.381 0.00 0.00 0.00 3.67
2414 2476 1.280998 CCCTCCGTCCCAAATAAGTGT 59.719 52.381 0.00 0.00 0.00 3.55
2415 2477 1.557832 TCCCTCCGTCCCAAATAAGTG 59.442 52.381 0.00 0.00 0.00 3.16
2416 2478 1.838077 CTCCCTCCGTCCCAAATAAGT 59.162 52.381 0.00 0.00 0.00 2.24
2417 2479 1.838077 ACTCCCTCCGTCCCAAATAAG 59.162 52.381 0.00 0.00 0.00 1.73
2418 2480 1.557832 CACTCCCTCCGTCCCAAATAA 59.442 52.381 0.00 0.00 0.00 1.40
2419 2481 1.200519 CACTCCCTCCGTCCCAAATA 58.799 55.000 0.00 0.00 0.00 1.40
2420 2482 1.991230 CACTCCCTCCGTCCCAAAT 59.009 57.895 0.00 0.00 0.00 2.32
2421 2483 2.890766 GCACTCCCTCCGTCCCAAA 61.891 63.158 0.00 0.00 0.00 3.28
2422 2484 2.449967 TAGCACTCCCTCCGTCCCAA 62.450 60.000 0.00 0.00 0.00 4.12
2423 2485 2.238319 ATAGCACTCCCTCCGTCCCA 62.238 60.000 0.00 0.00 0.00 4.37
2424 2486 1.457831 ATAGCACTCCCTCCGTCCC 60.458 63.158 0.00 0.00 0.00 4.46
2425 2487 0.468400 AGATAGCACTCCCTCCGTCC 60.468 60.000 0.00 0.00 0.00 4.79
2426 2488 2.156098 CTAGATAGCACTCCCTCCGTC 58.844 57.143 0.00 0.00 0.00 4.79
2427 2489 1.775459 TCTAGATAGCACTCCCTCCGT 59.225 52.381 0.00 0.00 0.00 4.69
2428 2490 2.554893 GTTCTAGATAGCACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
2429 2491 3.567397 TGTTCTAGATAGCACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
2430 2492 4.830046 TGATGTTCTAGATAGCACTCCCTC 59.170 45.833 0.00 0.00 0.00 4.30
2431 2493 4.809193 TGATGTTCTAGATAGCACTCCCT 58.191 43.478 0.00 0.00 0.00 4.20
2432 2494 5.069781 ACTTGATGTTCTAGATAGCACTCCC 59.930 44.000 0.00 0.00 0.00 4.30
2433 2495 6.155475 ACTTGATGTTCTAGATAGCACTCC 57.845 41.667 0.00 0.00 0.00 3.85
2492 2554 9.778993 CATCTAGAACACCAAATTAGTTTCATG 57.221 33.333 0.00 0.00 0.00 3.07
2833 3282 6.593770 TGTCATAGTTCATGAATTGTTAGCGT 59.406 34.615 12.12 0.00 45.28 5.07
2919 3385 5.353400 TGCATCTTTCACATCAAGATCAGTC 59.647 40.000 0.00 0.00 38.67 3.51
3017 3483 7.818493 TTGAATGAAAGAAGAGAGATACACG 57.182 36.000 0.00 0.00 0.00 4.49
3038 3504 2.811431 CGTACTTGTGCTTTCCCATTGA 59.189 45.455 0.00 0.00 0.00 2.57
3098 3564 2.300433 ACAGCAAACTCATCACAGCAA 58.700 42.857 0.00 0.00 0.00 3.91
3327 3798 7.281999 ACTTCCTGAAAAACTGAGAAAAGAGAG 59.718 37.037 0.00 0.00 0.00 3.20
3492 3963 4.785453 GGGGGTGCTCAGGCGAAG 62.785 72.222 0.00 0.00 42.25 3.79
3508 3979 1.303309 GCAGGACGATTGATTGAGGG 58.697 55.000 0.00 0.00 0.00 4.30
3644 4118 1.135721 GGGAAACAAGGCATGATGCTC 59.864 52.381 17.84 7.55 44.28 4.26
3650 4127 1.821136 GGAGAAGGGAAACAAGGCATG 59.179 52.381 0.00 0.00 0.00 4.06
3736 4214 3.170362 CAACAGGAGGGGCAGGAA 58.830 61.111 0.00 0.00 0.00 3.36
3745 4223 1.748591 GCTAAGATGGGGCAACAGGAG 60.749 57.143 0.00 0.00 39.74 3.69
3753 4231 1.527844 CCTGCAGCTAAGATGGGGC 60.528 63.158 8.66 0.00 0.00 5.80
3784 4262 4.058721 AGTCACCCATGCTTTGAAAAAC 57.941 40.909 0.00 0.00 0.00 2.43
3785 4263 4.280677 CCTAGTCACCCATGCTTTGAAAAA 59.719 41.667 0.00 0.00 0.00 1.94
3789 4267 1.281867 CCCTAGTCACCCATGCTTTGA 59.718 52.381 0.00 0.00 0.00 2.69
3834 4312 2.123597 ATGCCATGCCGAGCCATT 60.124 55.556 0.00 0.00 0.00 3.16
3835 4313 2.910479 CATGCCATGCCGAGCCAT 60.910 61.111 0.00 0.00 0.00 4.40
3839 4317 3.592814 CTGCCATGCCATGCCGAG 61.593 66.667 0.00 0.00 0.00 4.63
3882 4360 2.315925 GCATTCACCTGCTACTGCTA 57.684 50.000 0.00 0.00 39.12 3.49
3883 4361 3.165606 GCATTCACCTGCTACTGCT 57.834 52.632 0.00 0.00 39.12 4.24
3934 4412 2.943690 CACCTCATGATGAAAGGCAGAG 59.056 50.000 4.88 0.00 33.21 3.35
3935 4413 2.356432 CCACCTCATGATGAAAGGCAGA 60.356 50.000 4.88 0.00 33.21 4.26
3950 4428 1.043673 ATACCTGTCGGCTCCACCTC 61.044 60.000 0.00 0.00 35.61 3.85
3982 4460 4.141482 TGGGTCTAAGATTATGGGAGTTGC 60.141 45.833 0.00 0.00 0.00 4.17
3999 4477 5.930837 TTTGATTTGAAACAAGTGGGTCT 57.069 34.783 0.00 0.00 0.00 3.85
4027 4506 8.434589 TTTGATATGGAATGAGGGTTCTTTTT 57.565 30.769 0.00 0.00 0.00 1.94
4108 4590 3.116174 GGGTCCAAGATTAACTCCCTCT 58.884 50.000 0.00 0.00 0.00 3.69
4141 4623 8.897752 GTCAGGCTCAACAATATTATCTTTTCT 58.102 33.333 0.00 0.00 0.00 2.52
4157 4639 3.898123 AGTCAAGTCTAAGTCAGGCTCAA 59.102 43.478 0.00 0.00 38.66 3.02
4179 4661 5.423015 GCTGACTAATCTGACCAAGATCAA 58.577 41.667 0.00 0.00 45.37 2.57
4220 4702 4.520078 TGCGTTTCGAAAGTATTGTTGTC 58.480 39.130 11.66 0.00 0.00 3.18
4319 4801 2.622942 TGAGAAAGCATCGCAGGTTTTT 59.377 40.909 5.76 1.17 39.12 1.94
4320 4802 2.229792 TGAGAAAGCATCGCAGGTTTT 58.770 42.857 5.76 0.00 39.12 2.43
4321 4803 1.896220 TGAGAAAGCATCGCAGGTTT 58.104 45.000 4.21 4.21 41.44 3.27
4322 4804 1.741706 CATGAGAAAGCATCGCAGGTT 59.258 47.619 0.00 0.00 41.35 3.50
4323 4805 1.339438 ACATGAGAAAGCATCGCAGGT 60.339 47.619 0.00 7.52 45.88 4.00
4324 4806 1.329906 GACATGAGAAAGCATCGCAGG 59.670 52.381 0.00 6.42 43.93 4.85
4342 4824 3.766676 TCATGCTTCGACTAGTCTGAC 57.233 47.619 20.34 0.00 0.00 3.51
4364 4846 8.700973 AGAAAATGGGAGAGAGAGAACTAATAC 58.299 37.037 0.00 0.00 0.00 1.89
4404 4888 6.816140 TGTCAGTGATGCTATGTTTTAATCGA 59.184 34.615 0.00 0.00 0.00 3.59
4412 4896 4.898320 TGAGTTGTCAGTGATGCTATGTT 58.102 39.130 0.00 0.00 0.00 2.71
4419 4903 7.315890 TGAGTTAGTATGAGTTGTCAGTGATG 58.684 38.462 0.00 0.00 35.66 3.07
4421 4905 6.715264 TCTGAGTTAGTATGAGTTGTCAGTGA 59.285 38.462 0.00 0.00 35.66 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.