Multiple sequence alignment - TraesCS5D01G337900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G337900 chr5D 100.000 2534 0 0 1 2534 426405115 426402582 0.000000e+00 4680.0
1 TraesCS5D01G337900 chr6D 95.906 2125 70 6 412 2534 347439904 347437795 0.000000e+00 3426.0
2 TraesCS5D01G337900 chr5A 95.089 2138 94 10 399 2534 375292327 375290199 0.000000e+00 3356.0
3 TraesCS5D01G337900 chr5A 94.439 2086 106 6 451 2534 581623297 581625374 0.000000e+00 3201.0
4 TraesCS5D01G337900 chr5A 91.281 367 29 2 48 414 540567763 540567400 4.870000e-137 497.0
5 TraesCS5D01G337900 chr7D 94.853 2137 92 12 404 2534 85019314 85021438 0.000000e+00 3321.0
6 TraesCS5D01G337900 chr1D 94.507 2130 91 13 413 2534 303344960 303347071 0.000000e+00 3262.0
7 TraesCS5D01G337900 chr7B 94.319 2130 106 9 412 2534 442357638 442359759 0.000000e+00 3249.0
8 TraesCS5D01G337900 chr7B 85.532 235 20 3 2305 2534 138861545 138861770 1.520000e-57 233.0
9 TraesCS5D01G337900 chr2D 94.107 2138 109 9 407 2534 603142392 603144522 0.000000e+00 3234.0
10 TraesCS5D01G337900 chrUn 94.763 2043 95 6 412 2451 105335964 105333931 0.000000e+00 3169.0
11 TraesCS5D01G337900 chr4A 93.606 2127 120 11 414 2534 138429299 138427183 0.000000e+00 3160.0
12 TraesCS5D01G337900 chr5B 89.286 168 18 0 227 394 516361367 516361200 7.100000e-51 211.0
13 TraesCS5D01G337900 chr5B 88.535 157 12 1 15 171 516366869 516366719 4.300000e-43 185.0
14 TraesCS5D01G337900 chr5B 100.000 29 0 0 386 414 516278067 516278039 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G337900 chr5D 426402582 426405115 2533 True 4680 4680 100.000 1 2534 1 chr5D.!!$R1 2533
1 TraesCS5D01G337900 chr6D 347437795 347439904 2109 True 3426 3426 95.906 412 2534 1 chr6D.!!$R1 2122
2 TraesCS5D01G337900 chr5A 375290199 375292327 2128 True 3356 3356 95.089 399 2534 1 chr5A.!!$R1 2135
3 TraesCS5D01G337900 chr5A 581623297 581625374 2077 False 3201 3201 94.439 451 2534 1 chr5A.!!$F1 2083
4 TraesCS5D01G337900 chr7D 85019314 85021438 2124 False 3321 3321 94.853 404 2534 1 chr7D.!!$F1 2130
5 TraesCS5D01G337900 chr1D 303344960 303347071 2111 False 3262 3262 94.507 413 2534 1 chr1D.!!$F1 2121
6 TraesCS5D01G337900 chr7B 442357638 442359759 2121 False 3249 3249 94.319 412 2534 1 chr7B.!!$F2 2122
7 TraesCS5D01G337900 chr2D 603142392 603144522 2130 False 3234 3234 94.107 407 2534 1 chr2D.!!$F1 2127
8 TraesCS5D01G337900 chrUn 105333931 105335964 2033 True 3169 3169 94.763 412 2451 1 chrUn.!!$R1 2039
9 TraesCS5D01G337900 chr4A 138427183 138429299 2116 True 3160 3160 93.606 414 2534 1 chr4A.!!$R1 2120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.026803 GAGCGCGGATCAACAATGTC 59.973 55.0 8.83 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1874 1.070786 GTGGAAGAACACTCGGCCA 59.929 57.895 2.24 0.0 38.32 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.939201 AATATAAGATCTAGCAATGATGACGG 57.061 34.615 0.00 0.00 0.00 4.79
33 34 4.679373 AAGATCTAGCAATGATGACGGT 57.321 40.909 0.00 0.00 0.00 4.83
34 35 3.987547 AGATCTAGCAATGATGACGGTG 58.012 45.455 0.00 0.00 0.00 4.94
35 36 3.638627 AGATCTAGCAATGATGACGGTGA 59.361 43.478 0.00 0.00 0.00 4.02
36 37 4.282957 AGATCTAGCAATGATGACGGTGAT 59.717 41.667 0.00 0.00 0.00 3.06
37 38 4.406648 TCTAGCAATGATGACGGTGATT 57.593 40.909 0.00 0.00 0.00 2.57
38 39 4.769688 TCTAGCAATGATGACGGTGATTT 58.230 39.130 0.00 0.00 0.00 2.17
39 40 5.185454 TCTAGCAATGATGACGGTGATTTT 58.815 37.500 0.00 0.00 0.00 1.82
40 41 4.100707 AGCAATGATGACGGTGATTTTG 57.899 40.909 0.00 0.00 0.00 2.44
41 42 2.599973 GCAATGATGACGGTGATTTTGC 59.400 45.455 11.25 11.25 0.00 3.68
42 43 3.674138 GCAATGATGACGGTGATTTTGCT 60.674 43.478 16.20 0.00 36.27 3.91
43 44 4.438608 GCAATGATGACGGTGATTTTGCTA 60.439 41.667 16.20 0.00 36.27 3.49
44 45 5.639757 CAATGATGACGGTGATTTTGCTAA 58.360 37.500 0.00 0.00 0.00 3.09
45 46 4.944962 TGATGACGGTGATTTTGCTAAG 57.055 40.909 0.00 0.00 0.00 2.18
46 47 4.323417 TGATGACGGTGATTTTGCTAAGT 58.677 39.130 0.00 0.00 0.00 2.24
47 48 5.483811 TGATGACGGTGATTTTGCTAAGTA 58.516 37.500 0.00 0.00 0.00 2.24
48 49 6.112734 TGATGACGGTGATTTTGCTAAGTAT 58.887 36.000 0.00 0.00 0.00 2.12
49 50 7.269316 TGATGACGGTGATTTTGCTAAGTATA 58.731 34.615 0.00 0.00 0.00 1.47
50 51 7.766738 TGATGACGGTGATTTTGCTAAGTATAA 59.233 33.333 0.00 0.00 0.00 0.98
51 52 7.534085 TGACGGTGATTTTGCTAAGTATAAG 57.466 36.000 0.00 0.00 0.00 1.73
52 53 7.324935 TGACGGTGATTTTGCTAAGTATAAGA 58.675 34.615 0.00 0.00 0.00 2.10
53 54 7.985184 TGACGGTGATTTTGCTAAGTATAAGAT 59.015 33.333 0.00 0.00 0.00 2.40
54 55 8.366671 ACGGTGATTTTGCTAAGTATAAGATC 57.633 34.615 0.00 0.00 0.00 2.75
55 56 7.441458 ACGGTGATTTTGCTAAGTATAAGATCC 59.559 37.037 0.00 0.00 0.00 3.36
56 57 7.441157 CGGTGATTTTGCTAAGTATAAGATCCA 59.559 37.037 0.00 0.00 0.00 3.41
57 58 9.120538 GGTGATTTTGCTAAGTATAAGATCCAA 57.879 33.333 0.00 0.00 0.00 3.53
58 59 9.937175 GTGATTTTGCTAAGTATAAGATCCAAC 57.063 33.333 0.00 0.00 0.00 3.77
59 60 9.679661 TGATTTTGCTAAGTATAAGATCCAACA 57.320 29.630 0.00 0.00 0.00 3.33
61 62 9.686683 ATTTTGCTAAGTATAAGATCCAACAGT 57.313 29.630 0.00 0.00 0.00 3.55
62 63 8.492673 TTTGCTAAGTATAAGATCCAACAGTG 57.507 34.615 0.00 0.00 0.00 3.66
63 64 7.418337 TGCTAAGTATAAGATCCAACAGTGA 57.582 36.000 0.00 0.00 0.00 3.41
64 65 7.265673 TGCTAAGTATAAGATCCAACAGTGAC 58.734 38.462 0.00 0.00 0.00 3.67
65 66 7.093509 TGCTAAGTATAAGATCCAACAGTGACA 60.094 37.037 0.00 0.00 0.00 3.58
66 67 7.764443 GCTAAGTATAAGATCCAACAGTGACAA 59.236 37.037 0.00 0.00 0.00 3.18
67 68 7.907214 AAGTATAAGATCCAACAGTGACAAC 57.093 36.000 0.00 0.00 0.00 3.32
68 69 6.100004 AGTATAAGATCCAACAGTGACAACG 58.900 40.000 0.00 0.00 0.00 4.10
69 70 1.512926 AGATCCAACAGTGACAACGC 58.487 50.000 0.00 0.00 0.00 4.84
70 71 1.070758 AGATCCAACAGTGACAACGCT 59.929 47.619 0.00 0.00 37.34 5.07
71 72 1.461127 GATCCAACAGTGACAACGCTC 59.539 52.381 0.00 0.00 34.38 5.03
72 73 0.531974 TCCAACAGTGACAACGCTCC 60.532 55.000 0.00 0.00 34.38 4.70
73 74 0.532862 CCAACAGTGACAACGCTCCT 60.533 55.000 0.00 0.00 34.38 3.69
74 75 1.299541 CAACAGTGACAACGCTCCTT 58.700 50.000 0.00 0.00 34.38 3.36
75 76 1.261619 CAACAGTGACAACGCTCCTTC 59.738 52.381 0.00 0.00 34.38 3.46
76 77 0.249911 ACAGTGACAACGCTCCTTCC 60.250 55.000 0.00 0.00 34.38 3.46
77 78 0.951040 CAGTGACAACGCTCCTTCCC 60.951 60.000 0.00 0.00 34.38 3.97
78 79 1.122019 AGTGACAACGCTCCTTCCCT 61.122 55.000 0.00 0.00 30.39 4.20
79 80 0.670854 GTGACAACGCTCCTTCCCTC 60.671 60.000 0.00 0.00 0.00 4.30
80 81 1.079057 GACAACGCTCCTTCCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
81 82 1.536662 ACAACGCTCCTTCCCTCCT 60.537 57.895 0.00 0.00 0.00 3.69
82 83 1.219393 CAACGCTCCTTCCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
83 84 1.229209 AACGCTCCTTCCCTCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
84 85 1.545706 AACGCTCCTTCCCTCCTCAC 61.546 60.000 0.00 0.00 0.00 3.51
85 86 2.726351 CGCTCCTTCCCTCCTCACC 61.726 68.421 0.00 0.00 0.00 4.02
86 87 2.371259 GCTCCTTCCCTCCTCACCC 61.371 68.421 0.00 0.00 0.00 4.61
87 88 1.690985 CTCCTTCCCTCCTCACCCC 60.691 68.421 0.00 0.00 0.00 4.95
88 89 2.184631 TCCTTCCCTCCTCACCCCT 61.185 63.158 0.00 0.00 0.00 4.79
89 90 1.690985 CCTTCCCTCCTCACCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
90 91 1.690985 CTTCCCTCCTCACCCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
91 92 2.184631 TTCCCTCCTCACCCCTCCT 61.185 63.158 0.00 0.00 0.00 3.69
92 93 2.041405 CCCTCCTCACCCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
93 94 2.780693 CCTCCTCACCCCTCCTCA 59.219 66.667 0.00 0.00 0.00 3.86
94 95 1.687493 CCTCCTCACCCCTCCTCAC 60.687 68.421 0.00 0.00 0.00 3.51
95 96 2.037367 TCCTCACCCCTCCTCACG 59.963 66.667 0.00 0.00 0.00 4.35
96 97 2.037367 CCTCACCCCTCCTCACGA 59.963 66.667 0.00 0.00 0.00 4.35
97 98 1.609501 CCTCACCCCTCCTCACGAA 60.610 63.158 0.00 0.00 0.00 3.85
98 99 1.608717 CCTCACCCCTCCTCACGAAG 61.609 65.000 0.00 0.00 0.00 3.79
99 100 2.232298 CTCACCCCTCCTCACGAAGC 62.232 65.000 0.00 0.00 0.00 3.86
100 101 2.203788 ACCCCTCCTCACGAAGCA 60.204 61.111 0.00 0.00 0.00 3.91
101 102 1.841556 ACCCCTCCTCACGAAGCAA 60.842 57.895 0.00 0.00 0.00 3.91
102 103 1.374947 CCCCTCCTCACGAAGCAAA 59.625 57.895 0.00 0.00 0.00 3.68
103 104 0.250727 CCCCTCCTCACGAAGCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
104 105 1.160137 CCCTCCTCACGAAGCAAAAG 58.840 55.000 0.00 0.00 0.00 2.27
105 106 1.160137 CCTCCTCACGAAGCAAAAGG 58.840 55.000 0.00 0.00 0.00 3.11
106 107 1.270839 CCTCCTCACGAAGCAAAAGGA 60.271 52.381 0.00 0.00 34.97 3.36
107 108 2.072298 CTCCTCACGAAGCAAAAGGAG 58.928 52.381 2.56 2.56 45.15 3.69
108 109 1.691976 TCCTCACGAAGCAAAAGGAGA 59.308 47.619 0.00 0.00 32.45 3.71
109 110 2.072298 CCTCACGAAGCAAAAGGAGAG 58.928 52.381 0.00 0.00 0.00 3.20
110 111 2.548920 CCTCACGAAGCAAAAGGAGAGT 60.549 50.000 0.00 0.00 0.00 3.24
111 112 2.478134 CTCACGAAGCAAAAGGAGAGTG 59.522 50.000 0.00 0.00 0.00 3.51
112 113 1.532868 CACGAAGCAAAAGGAGAGTGG 59.467 52.381 0.00 0.00 0.00 4.00
113 114 1.416401 ACGAAGCAAAAGGAGAGTGGA 59.584 47.619 0.00 0.00 0.00 4.02
114 115 2.158813 ACGAAGCAAAAGGAGAGTGGAA 60.159 45.455 0.00 0.00 0.00 3.53
115 116 3.077359 CGAAGCAAAAGGAGAGTGGAAT 58.923 45.455 0.00 0.00 0.00 3.01
116 117 3.126000 CGAAGCAAAAGGAGAGTGGAATC 59.874 47.826 0.00 0.00 0.00 2.52
117 118 2.704572 AGCAAAAGGAGAGTGGAATCG 58.295 47.619 0.00 0.00 0.00 3.34
118 119 2.039084 AGCAAAAGGAGAGTGGAATCGT 59.961 45.455 0.00 0.00 0.00 3.73
119 120 2.814336 GCAAAAGGAGAGTGGAATCGTT 59.186 45.455 0.00 0.00 0.00 3.85
120 121 3.365364 GCAAAAGGAGAGTGGAATCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
121 122 3.771577 AAAGGAGAGTGGAATCGTTGT 57.228 42.857 0.00 0.00 0.00 3.32
122 123 3.320673 AAGGAGAGTGGAATCGTTGTC 57.679 47.619 0.00 0.00 0.00 3.18
123 124 2.248248 AGGAGAGTGGAATCGTTGTCA 58.752 47.619 0.00 0.00 0.00 3.58
124 125 2.632996 AGGAGAGTGGAATCGTTGTCAA 59.367 45.455 0.00 0.00 0.00 3.18
125 126 3.071023 AGGAGAGTGGAATCGTTGTCAAA 59.929 43.478 0.00 0.00 0.00 2.69
126 127 3.813166 GGAGAGTGGAATCGTTGTCAAAA 59.187 43.478 0.00 0.00 0.00 2.44
127 128 4.083802 GGAGAGTGGAATCGTTGTCAAAAG 60.084 45.833 0.00 0.00 0.00 2.27
128 129 4.703897 AGAGTGGAATCGTTGTCAAAAGA 58.296 39.130 0.00 0.00 0.00 2.52
129 130 5.308825 AGAGTGGAATCGTTGTCAAAAGAT 58.691 37.500 0.00 0.00 36.24 2.40
130 131 5.180117 AGAGTGGAATCGTTGTCAAAAGATG 59.820 40.000 5.79 0.00 35.11 2.90
131 132 5.063204 AGTGGAATCGTTGTCAAAAGATGA 58.937 37.500 5.79 0.00 35.11 2.92
141 142 2.929641 TCAAAAGATGACTGTGGCACA 58.070 42.857 20.76 20.76 31.50 4.57
152 153 3.279116 TGGCACACAGTTGAGCGC 61.279 61.111 0.00 0.00 40.02 5.92
153 154 4.374702 GGCACACAGTTGAGCGCG 62.375 66.667 0.00 0.00 40.02 6.86
154 155 4.374702 GCACACAGTTGAGCGCGG 62.375 66.667 8.83 0.00 29.18 6.46
155 156 2.661537 CACACAGTTGAGCGCGGA 60.662 61.111 8.83 0.00 0.00 5.54
156 157 2.029288 CACACAGTTGAGCGCGGAT 61.029 57.895 8.83 0.00 0.00 4.18
157 158 1.738099 ACACAGTTGAGCGCGGATC 60.738 57.895 8.83 0.00 0.00 3.36
158 159 1.737735 CACAGTTGAGCGCGGATCA 60.738 57.895 8.83 0.00 0.00 2.92
159 160 1.005037 ACAGTTGAGCGCGGATCAA 60.005 52.632 8.83 3.75 35.54 2.57
162 163 4.370182 TTGAGCGCGGATCAACAA 57.630 50.000 8.83 0.00 32.88 2.83
163 164 2.853159 TTGAGCGCGGATCAACAAT 58.147 47.368 8.83 0.00 32.88 2.71
164 165 0.447406 TTGAGCGCGGATCAACAATG 59.553 50.000 8.83 0.00 32.88 2.82
165 166 0.673333 TGAGCGCGGATCAACAATGT 60.673 50.000 8.83 0.00 0.00 2.71
166 167 0.026803 GAGCGCGGATCAACAATGTC 59.973 55.000 8.83 0.00 0.00 3.06
167 168 0.391661 AGCGCGGATCAACAATGTCT 60.392 50.000 8.83 0.00 0.00 3.41
168 169 1.134818 AGCGCGGATCAACAATGTCTA 60.135 47.619 8.83 0.00 0.00 2.59
169 170 1.867233 GCGCGGATCAACAATGTCTAT 59.133 47.619 8.83 0.00 0.00 1.98
170 171 2.096713 GCGCGGATCAACAATGTCTATC 60.097 50.000 8.83 0.00 0.00 2.08
171 172 3.384668 CGCGGATCAACAATGTCTATCT 58.615 45.455 0.00 0.00 0.00 1.98
172 173 3.426859 CGCGGATCAACAATGTCTATCTC 59.573 47.826 0.00 1.69 0.00 2.75
173 174 4.626042 GCGGATCAACAATGTCTATCTCT 58.374 43.478 0.00 0.00 0.00 3.10
174 175 4.447054 GCGGATCAACAATGTCTATCTCTG 59.553 45.833 0.00 0.00 0.00 3.35
175 176 5.737349 GCGGATCAACAATGTCTATCTCTGA 60.737 44.000 0.00 0.00 0.00 3.27
176 177 6.453943 CGGATCAACAATGTCTATCTCTGAT 58.546 40.000 0.00 2.03 0.00 2.90
177 178 6.927936 CGGATCAACAATGTCTATCTCTGATT 59.072 38.462 0.00 0.00 0.00 2.57
178 179 7.116090 CGGATCAACAATGTCTATCTCTGATTC 59.884 40.741 0.00 0.66 0.00 2.52
179 180 8.149647 GGATCAACAATGTCTATCTCTGATTCT 58.850 37.037 0.00 0.00 0.00 2.40
181 182 9.979578 ATCAACAATGTCTATCTCTGATTCTAC 57.020 33.333 0.00 0.00 0.00 2.59
182 183 8.417106 TCAACAATGTCTATCTCTGATTCTACC 58.583 37.037 0.00 0.00 0.00 3.18
183 184 6.976088 ACAATGTCTATCTCTGATTCTACCG 58.024 40.000 0.00 0.00 0.00 4.02
184 185 6.547880 ACAATGTCTATCTCTGATTCTACCGT 59.452 38.462 0.00 0.00 0.00 4.83
185 186 7.068839 ACAATGTCTATCTCTGATTCTACCGTT 59.931 37.037 0.00 0.00 0.00 4.44
186 187 7.589958 ATGTCTATCTCTGATTCTACCGTTT 57.410 36.000 0.00 0.00 0.00 3.60
187 188 8.693120 ATGTCTATCTCTGATTCTACCGTTTA 57.307 34.615 0.00 0.00 0.00 2.01
188 189 7.928103 TGTCTATCTCTGATTCTACCGTTTAC 58.072 38.462 0.00 0.00 0.00 2.01
189 190 7.774157 TGTCTATCTCTGATTCTACCGTTTACT 59.226 37.037 0.00 0.00 0.00 2.24
190 191 9.270640 GTCTATCTCTGATTCTACCGTTTACTA 57.729 37.037 0.00 0.00 0.00 1.82
191 192 9.491675 TCTATCTCTGATTCTACCGTTTACTAG 57.508 37.037 0.00 0.00 0.00 2.57
192 193 6.374565 TCTCTGATTCTACCGTTTACTAGC 57.625 41.667 0.00 0.00 0.00 3.42
193 194 5.884232 TCTCTGATTCTACCGTTTACTAGCA 59.116 40.000 0.00 0.00 0.00 3.49
194 195 5.888105 TCTGATTCTACCGTTTACTAGCAC 58.112 41.667 0.00 0.00 0.00 4.40
195 196 5.002464 TGATTCTACCGTTTACTAGCACC 57.998 43.478 0.00 0.00 0.00 5.01
196 197 4.463539 TGATTCTACCGTTTACTAGCACCA 59.536 41.667 0.00 0.00 0.00 4.17
197 198 3.855689 TCTACCGTTTACTAGCACCAC 57.144 47.619 0.00 0.00 0.00 4.16
198 199 3.156293 TCTACCGTTTACTAGCACCACA 58.844 45.455 0.00 0.00 0.00 4.17
199 200 2.450609 ACCGTTTACTAGCACCACAG 57.549 50.000 0.00 0.00 0.00 3.66
200 201 1.690352 ACCGTTTACTAGCACCACAGT 59.310 47.619 0.00 0.00 0.00 3.55
201 202 2.103601 ACCGTTTACTAGCACCACAGTT 59.896 45.455 0.00 0.00 0.00 3.16
202 203 2.478894 CCGTTTACTAGCACCACAGTTG 59.521 50.000 0.00 0.00 0.00 3.16
203 204 2.096417 CGTTTACTAGCACCACAGTTGC 60.096 50.000 0.00 0.00 0.00 4.17
204 205 2.178912 TTACTAGCACCACAGTTGCC 57.821 50.000 0.00 0.00 0.00 4.52
205 206 0.037697 TACTAGCACCACAGTTGCCG 60.038 55.000 0.00 0.00 0.00 5.69
206 207 2.668212 TAGCACCACAGTTGCCGC 60.668 61.111 0.00 0.00 0.00 6.53
209 210 3.357079 CACCACAGTTGCCGCCTC 61.357 66.667 0.00 0.00 0.00 4.70
210 211 4.988598 ACCACAGTTGCCGCCTCG 62.989 66.667 0.00 0.00 0.00 4.63
211 212 4.988598 CCACAGTTGCCGCCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
212 213 3.716006 CACAGTTGCCGCCTCGTG 61.716 66.667 0.00 0.00 0.00 4.35
219 220 4.129737 GCCGCCTCGTGCTGTCTA 62.130 66.667 0.00 0.00 38.05 2.59
220 221 2.202623 CCGCCTCGTGCTGTCTAC 60.203 66.667 0.00 0.00 38.05 2.59
221 222 2.202623 CGCCTCGTGCTGTCTACC 60.203 66.667 0.00 0.00 38.05 3.18
222 223 2.184579 GCCTCGTGCTGTCTACCC 59.815 66.667 0.00 0.00 36.87 3.69
223 224 2.893398 CCTCGTGCTGTCTACCCC 59.107 66.667 0.00 0.00 0.00 4.95
224 225 1.982395 CCTCGTGCTGTCTACCCCA 60.982 63.158 0.00 0.00 0.00 4.96
225 226 1.330655 CCTCGTGCTGTCTACCCCAT 61.331 60.000 0.00 0.00 0.00 4.00
226 227 1.399714 CTCGTGCTGTCTACCCCATA 58.600 55.000 0.00 0.00 0.00 2.74
227 228 1.338337 CTCGTGCTGTCTACCCCATAG 59.662 57.143 0.00 0.00 0.00 2.23
228 229 1.064240 TCGTGCTGTCTACCCCATAGA 60.064 52.381 0.00 0.00 37.60 1.98
229 230 1.338337 CGTGCTGTCTACCCCATAGAG 59.662 57.143 0.00 0.00 40.76 2.43
230 231 2.667470 GTGCTGTCTACCCCATAGAGA 58.333 52.381 0.00 0.00 40.76 3.10
231 232 3.235200 GTGCTGTCTACCCCATAGAGAT 58.765 50.000 0.00 0.00 40.76 2.75
232 233 3.006323 GTGCTGTCTACCCCATAGAGATG 59.994 52.174 0.00 0.00 40.76 2.90
233 234 3.117131 TGCTGTCTACCCCATAGAGATGA 60.117 47.826 0.00 0.00 40.76 2.92
234 235 3.257127 GCTGTCTACCCCATAGAGATGAC 59.743 52.174 0.00 0.00 40.76 3.06
235 236 4.474394 CTGTCTACCCCATAGAGATGACA 58.526 47.826 0.00 0.00 40.76 3.58
236 237 4.878968 TGTCTACCCCATAGAGATGACAA 58.121 43.478 0.00 0.00 40.76 3.18
237 238 5.277250 TGTCTACCCCATAGAGATGACAAA 58.723 41.667 0.00 0.00 40.76 2.83
238 239 5.363868 TGTCTACCCCATAGAGATGACAAAG 59.636 44.000 0.00 0.00 40.76 2.77
239 240 5.598830 GTCTACCCCATAGAGATGACAAAGA 59.401 44.000 0.00 0.00 40.76 2.52
240 241 6.268847 GTCTACCCCATAGAGATGACAAAGAT 59.731 42.308 0.00 0.00 40.76 2.40
241 242 5.301835 ACCCCATAGAGATGACAAAGATG 57.698 43.478 0.00 0.00 34.73 2.90
242 243 4.070716 CCCCATAGAGATGACAAAGATGC 58.929 47.826 0.00 0.00 34.73 3.91
243 244 4.070716 CCCATAGAGATGACAAAGATGCC 58.929 47.826 0.00 0.00 34.73 4.40
244 245 4.070716 CCATAGAGATGACAAAGATGCCC 58.929 47.826 0.00 0.00 34.73 5.36
245 246 4.202440 CCATAGAGATGACAAAGATGCCCT 60.202 45.833 0.00 0.00 34.73 5.19
246 247 5.012458 CCATAGAGATGACAAAGATGCCCTA 59.988 44.000 0.00 0.00 34.73 3.53
247 248 4.414337 AGAGATGACAAAGATGCCCTAC 57.586 45.455 0.00 0.00 0.00 3.18
248 249 4.036518 AGAGATGACAAAGATGCCCTACT 58.963 43.478 0.00 0.00 0.00 2.57
249 250 4.100808 AGAGATGACAAAGATGCCCTACTC 59.899 45.833 0.00 0.00 0.00 2.59
250 251 3.135530 AGATGACAAAGATGCCCTACTCC 59.864 47.826 0.00 0.00 0.00 3.85
251 252 1.207089 TGACAAAGATGCCCTACTCCG 59.793 52.381 0.00 0.00 0.00 4.63
252 253 1.207329 GACAAAGATGCCCTACTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
253 254 1.066143 ACAAAGATGCCCTACTCCGTG 60.066 52.381 0.00 0.00 0.00 4.94
254 255 0.541863 AAAGATGCCCTACTCCGTGG 59.458 55.000 0.00 0.00 0.00 4.94
255 256 0.325296 AAGATGCCCTACTCCGTGGA 60.325 55.000 0.00 0.00 0.00 4.02
256 257 1.043673 AGATGCCCTACTCCGTGGAC 61.044 60.000 0.00 0.00 0.00 4.02
257 258 1.305802 ATGCCCTACTCCGTGGACA 60.306 57.895 0.00 0.00 0.00 4.02
258 259 0.691078 ATGCCCTACTCCGTGGACAT 60.691 55.000 0.00 0.00 0.00 3.06
259 260 1.144057 GCCCTACTCCGTGGACATG 59.856 63.158 0.00 0.00 0.00 3.21
260 261 1.327690 GCCCTACTCCGTGGACATGA 61.328 60.000 0.00 0.00 0.00 3.07
261 262 1.414158 CCCTACTCCGTGGACATGAT 58.586 55.000 0.00 0.00 0.00 2.45
262 263 2.594131 CCCTACTCCGTGGACATGATA 58.406 52.381 0.00 0.00 0.00 2.15
263 264 2.963101 CCCTACTCCGTGGACATGATAA 59.037 50.000 0.00 0.00 0.00 1.75
264 265 3.386726 CCCTACTCCGTGGACATGATAAA 59.613 47.826 0.00 0.00 0.00 1.40
265 266 4.501571 CCCTACTCCGTGGACATGATAAAG 60.502 50.000 0.00 0.00 0.00 1.85
266 267 4.341235 CCTACTCCGTGGACATGATAAAGA 59.659 45.833 0.00 0.00 0.00 2.52
267 268 4.124851 ACTCCGTGGACATGATAAAGAC 57.875 45.455 0.00 0.00 0.00 3.01
268 269 3.116300 CTCCGTGGACATGATAAAGACG 58.884 50.000 0.00 0.00 0.00 4.18
269 270 2.756207 TCCGTGGACATGATAAAGACGA 59.244 45.455 0.00 0.00 0.00 4.20
270 271 3.383505 TCCGTGGACATGATAAAGACGAT 59.616 43.478 0.00 0.00 0.00 3.73
271 272 3.490896 CCGTGGACATGATAAAGACGATG 59.509 47.826 0.00 0.00 0.00 3.84
272 273 3.490896 CGTGGACATGATAAAGACGATGG 59.509 47.826 0.00 0.00 0.00 3.51
273 274 3.248602 GTGGACATGATAAAGACGATGGC 59.751 47.826 0.00 0.00 0.00 4.40
274 275 2.476619 GGACATGATAAAGACGATGGCG 59.523 50.000 0.00 0.00 44.79 5.69
275 276 3.381045 GACATGATAAAGACGATGGCGA 58.619 45.455 0.00 0.00 41.64 5.54
276 277 3.384668 ACATGATAAAGACGATGGCGAG 58.615 45.455 0.00 0.00 41.64 5.03
277 278 3.068165 ACATGATAAAGACGATGGCGAGA 59.932 43.478 0.00 0.00 41.64 4.04
278 279 3.355626 TGATAAAGACGATGGCGAGAG 57.644 47.619 0.00 0.00 41.64 3.20
279 280 2.949644 TGATAAAGACGATGGCGAGAGA 59.050 45.455 0.00 0.00 41.64 3.10
280 281 3.380320 TGATAAAGACGATGGCGAGAGAA 59.620 43.478 0.00 0.00 41.64 2.87
281 282 2.743636 AAAGACGATGGCGAGAGAAA 57.256 45.000 0.00 0.00 41.64 2.52
282 283 2.285827 AAGACGATGGCGAGAGAAAG 57.714 50.000 0.00 0.00 41.64 2.62
283 284 1.464734 AGACGATGGCGAGAGAAAGA 58.535 50.000 0.00 0.00 41.64 2.52
284 285 1.403679 AGACGATGGCGAGAGAAAGAG 59.596 52.381 0.00 0.00 41.64 2.85
285 286 1.402259 GACGATGGCGAGAGAAAGAGA 59.598 52.381 0.00 0.00 41.64 3.10
286 287 1.819288 ACGATGGCGAGAGAAAGAGAA 59.181 47.619 0.00 0.00 41.64 2.87
287 288 2.159310 ACGATGGCGAGAGAAAGAGAAG 60.159 50.000 0.00 0.00 41.64 2.85
288 289 2.098280 CGATGGCGAGAGAAAGAGAAGA 59.902 50.000 0.00 0.00 40.82 2.87
289 290 3.443976 GATGGCGAGAGAAAGAGAAGAC 58.556 50.000 0.00 0.00 0.00 3.01
290 291 2.239400 TGGCGAGAGAAAGAGAAGACA 58.761 47.619 0.00 0.00 0.00 3.41
291 292 2.628178 TGGCGAGAGAAAGAGAAGACAA 59.372 45.455 0.00 0.00 0.00 3.18
292 293 3.249917 GGCGAGAGAAAGAGAAGACAAG 58.750 50.000 0.00 0.00 0.00 3.16
293 294 3.249917 GCGAGAGAAAGAGAAGACAAGG 58.750 50.000 0.00 0.00 0.00 3.61
294 295 3.057174 GCGAGAGAAAGAGAAGACAAGGA 60.057 47.826 0.00 0.00 0.00 3.36
295 296 4.381505 GCGAGAGAAAGAGAAGACAAGGAT 60.382 45.833 0.00 0.00 0.00 3.24
296 297 5.339990 CGAGAGAAAGAGAAGACAAGGATC 58.660 45.833 0.00 0.00 0.00 3.36
297 298 5.125417 CGAGAGAAAGAGAAGACAAGGATCT 59.875 44.000 0.00 0.00 0.00 2.75
298 299 6.350110 CGAGAGAAAGAGAAGACAAGGATCTT 60.350 42.308 0.00 0.00 41.74 2.40
299 300 6.700352 AGAGAAAGAGAAGACAAGGATCTTG 58.300 40.000 6.15 6.15 39.08 3.02
300 301 6.269769 AGAGAAAGAGAAGACAAGGATCTTGT 59.730 38.462 12.42 12.42 39.08 3.16
301 302 6.836242 AGAAAGAGAAGACAAGGATCTTGTT 58.164 36.000 13.56 0.46 39.08 2.83
302 303 6.934083 AGAAAGAGAAGACAAGGATCTTGTTC 59.066 38.462 13.56 8.91 39.08 3.18
303 304 4.815269 AGAGAAGACAAGGATCTTGTTCG 58.185 43.478 13.56 0.00 39.08 3.95
304 305 4.282195 AGAGAAGACAAGGATCTTGTTCGT 59.718 41.667 13.56 6.58 39.08 3.85
305 306 4.962155 AGAAGACAAGGATCTTGTTCGTT 58.038 39.130 13.56 8.55 39.08 3.85
306 307 5.368989 AGAAGACAAGGATCTTGTTCGTTT 58.631 37.500 13.56 7.34 39.08 3.60
307 308 5.237344 AGAAGACAAGGATCTTGTTCGTTTG 59.763 40.000 13.56 0.00 39.08 2.93
308 309 4.703897 AGACAAGGATCTTGTTCGTTTGA 58.296 39.130 13.56 0.00 31.96 2.69
309 310 5.123227 AGACAAGGATCTTGTTCGTTTGAA 58.877 37.500 13.56 0.00 31.96 2.69
310 311 5.237344 AGACAAGGATCTTGTTCGTTTGAAG 59.763 40.000 13.56 0.00 33.98 3.02
311 312 5.123227 ACAAGGATCTTGTTCGTTTGAAGA 58.877 37.500 7.41 0.00 33.98 2.87
312 313 5.588648 ACAAGGATCTTGTTCGTTTGAAGAA 59.411 36.000 7.41 0.00 35.24 2.52
317 318 3.963383 TTGTTCGTTTGAAGAAGAGGC 57.037 42.857 0.00 0.00 32.92 4.70
318 319 2.912771 TGTTCGTTTGAAGAAGAGGCA 58.087 42.857 0.00 0.00 33.98 4.75
319 320 3.476552 TGTTCGTTTGAAGAAGAGGCAT 58.523 40.909 0.00 0.00 33.98 4.40
320 321 3.882888 TGTTCGTTTGAAGAAGAGGCATT 59.117 39.130 0.00 0.00 33.98 3.56
321 322 4.024048 TGTTCGTTTGAAGAAGAGGCATTC 60.024 41.667 0.00 0.00 33.98 2.67
322 323 2.736721 TCGTTTGAAGAAGAGGCATTCG 59.263 45.455 0.00 0.00 34.27 3.34
323 324 2.159653 CGTTTGAAGAAGAGGCATTCGG 60.160 50.000 0.00 0.00 34.27 4.30
324 325 1.453155 TTGAAGAAGAGGCATTCGGC 58.547 50.000 0.00 0.00 43.74 5.54
333 334 3.422303 GCATTCGGCAGTGCGTCA 61.422 61.111 9.45 0.00 43.97 4.35
334 335 2.965147 GCATTCGGCAGTGCGTCAA 61.965 57.895 9.45 1.59 43.97 3.18
335 336 1.796151 CATTCGGCAGTGCGTCAAT 59.204 52.632 9.45 4.07 0.00 2.57
336 337 0.247814 CATTCGGCAGTGCGTCAATC 60.248 55.000 9.45 0.00 0.00 2.67
337 338 1.695893 ATTCGGCAGTGCGTCAATCG 61.696 55.000 9.45 5.93 43.12 3.34
338 339 2.757155 TTCGGCAGTGCGTCAATCGA 62.757 55.000 9.45 8.42 42.86 3.59
339 340 2.379634 CGGCAGTGCGTCAATCGAA 61.380 57.895 9.45 0.00 42.86 3.71
340 341 1.866237 GGCAGTGCGTCAATCGAAA 59.134 52.632 9.45 0.00 42.86 3.46
341 342 0.237235 GGCAGTGCGTCAATCGAAAA 59.763 50.000 9.45 0.00 42.86 2.29
342 343 1.334599 GGCAGTGCGTCAATCGAAAAA 60.335 47.619 9.45 0.00 42.86 1.94
343 344 1.708680 GCAGTGCGTCAATCGAAAAAC 59.291 47.619 0.00 0.00 42.86 2.43
344 345 2.852901 GCAGTGCGTCAATCGAAAAACA 60.853 45.455 0.00 0.00 42.86 2.83
345 346 2.966708 CAGTGCGTCAATCGAAAAACAG 59.033 45.455 0.00 0.00 42.86 3.16
346 347 2.612212 AGTGCGTCAATCGAAAAACAGT 59.388 40.909 0.00 0.00 42.86 3.55
347 348 2.713976 GTGCGTCAATCGAAAAACAGTG 59.286 45.455 0.00 0.00 42.86 3.66
348 349 2.286713 TGCGTCAATCGAAAAACAGTGG 60.287 45.455 0.00 0.00 42.86 4.00
349 350 2.307049 CGTCAATCGAAAAACAGTGGC 58.693 47.619 0.00 0.00 42.86 5.01
350 351 2.661594 GTCAATCGAAAAACAGTGGCC 58.338 47.619 0.00 0.00 0.00 5.36
351 352 1.265635 TCAATCGAAAAACAGTGGCCG 59.734 47.619 0.00 0.00 0.00 6.13
352 353 1.265635 CAATCGAAAAACAGTGGCCGA 59.734 47.619 0.00 0.00 0.00 5.54
353 354 0.872388 ATCGAAAAACAGTGGCCGAC 59.128 50.000 0.00 0.00 0.00 4.79
354 355 0.179067 TCGAAAAACAGTGGCCGACT 60.179 50.000 0.00 0.00 34.02 4.18
355 356 1.068895 TCGAAAAACAGTGGCCGACTA 59.931 47.619 7.41 0.00 31.73 2.59
356 357 1.193874 CGAAAAACAGTGGCCGACTAC 59.806 52.381 7.41 0.00 31.73 2.73
357 358 1.193874 GAAAAACAGTGGCCGACTACG 59.806 52.381 7.41 0.66 39.43 3.51
358 359 1.226030 AAAACAGTGGCCGACTACGC 61.226 55.000 7.41 0.00 38.29 4.42
359 360 2.372040 AAACAGTGGCCGACTACGCA 62.372 55.000 7.41 0.00 38.29 5.24
360 361 2.507102 CAGTGGCCGACTACGCAG 60.507 66.667 7.41 0.00 38.29 5.18
361 362 3.760035 AGTGGCCGACTACGCAGG 61.760 66.667 0.00 0.00 38.29 4.85
368 369 1.978542 CCGACTACGCAGGCATATAC 58.021 55.000 0.00 0.00 38.29 1.47
369 370 1.268625 CCGACTACGCAGGCATATACA 59.731 52.381 0.00 0.00 38.29 2.29
370 371 2.316792 CGACTACGCAGGCATATACAC 58.683 52.381 0.00 0.00 0.00 2.90
371 372 2.316792 GACTACGCAGGCATATACACG 58.683 52.381 0.00 0.00 0.00 4.49
372 373 1.000607 ACTACGCAGGCATATACACGG 60.001 52.381 0.00 0.00 0.00 4.94
373 374 0.319211 TACGCAGGCATATACACGGC 60.319 55.000 0.00 0.00 0.00 5.68
374 375 2.657757 CGCAGGCATATACACGGCG 61.658 63.158 4.80 4.80 41.70 6.46
375 376 1.594293 GCAGGCATATACACGGCGT 60.594 57.895 6.77 6.77 0.00 5.68
376 377 1.831389 GCAGGCATATACACGGCGTG 61.831 60.000 35.89 35.89 43.92 5.34
377 378 1.069090 AGGCATATACACGGCGTGG 59.931 57.895 39.03 23.96 37.94 4.94
378 379 1.227438 GGCATATACACGGCGTGGT 60.227 57.895 39.03 29.34 37.94 4.16
379 380 0.812412 GGCATATACACGGCGTGGTT 60.812 55.000 39.03 28.26 37.94 3.67
380 381 0.303493 GCATATACACGGCGTGGTTG 59.697 55.000 39.03 28.95 37.94 3.77
381 382 1.929230 CATATACACGGCGTGGTTGA 58.071 50.000 39.03 23.39 37.94 3.18
382 383 1.858458 CATATACACGGCGTGGTTGAG 59.142 52.381 39.03 23.49 37.94 3.02
383 384 0.458889 TATACACGGCGTGGTTGAGC 60.459 55.000 39.03 0.00 37.94 4.26
384 385 2.443260 ATACACGGCGTGGTTGAGCA 62.443 55.000 39.03 17.61 37.94 4.26
385 386 3.716006 CACGGCGTGGTTGAGCAG 61.716 66.667 31.19 2.67 34.54 4.24
389 390 3.730761 GCGTGGTTGAGCAGCCAG 61.731 66.667 6.29 3.03 42.46 4.85
390 391 3.730761 CGTGGTTGAGCAGCCAGC 61.731 66.667 6.29 1.92 42.46 4.85
402 403 4.899239 GCCAGCGGGAGACGGATG 62.899 72.222 7.23 0.00 45.48 3.51
405 406 3.449349 AGCGGGAGACGGATGATC 58.551 61.111 0.00 0.00 44.51 2.92
577 578 2.048127 GTTTCTCGCGAGCCAGGT 60.048 61.111 30.97 0.00 0.00 4.00
655 657 2.124570 ATGGAAATCTGGCGCGCT 60.125 55.556 32.29 10.06 0.00 5.92
656 658 2.110734 GATGGAAATCTGGCGCGCTC 62.111 60.000 32.29 21.22 0.00 5.03
703 705 1.611673 CCTTTCACTCGCTCACCCATT 60.612 52.381 0.00 0.00 0.00 3.16
985 1001 1.068417 CCCACTGAACGAACCGTCA 59.932 57.895 0.00 0.00 39.99 4.35
1063 1079 0.541392 TAGTGCGATTCAGGCATGGT 59.459 50.000 0.00 0.00 43.19 3.55
1116 1132 3.295800 GGGAGACCGTTGATCCGT 58.704 61.111 0.00 0.00 43.64 4.69
1197 1213 0.100682 GCAATGACGTCGAGGCTCTA 59.899 55.000 13.50 0.00 0.00 2.43
1263 1279 1.690633 CTTCAGGAGCAGGGGCCTA 60.691 63.158 0.84 0.00 42.56 3.93
1428 1444 0.771127 TTGCTGTTGGGGAGCTTAGT 59.229 50.000 0.00 0.00 37.35 2.24
1429 1445 1.651737 TGCTGTTGGGGAGCTTAGTA 58.348 50.000 0.00 0.00 37.35 1.82
1441 1457 4.394920 GGGAGCTTAGTAGAGAGATGATCG 59.605 50.000 0.00 0.00 0.00 3.69
1509 1525 7.202093 CCAAGATGGTATCCATACTTCAAGGTA 60.202 40.741 0.99 0.00 45.26 3.08
1532 1548 9.289303 GGTAAGCATTGACAATATACACTTTTG 57.711 33.333 0.00 0.00 0.00 2.44
1864 1880 1.823470 GGCTATGCATGTTGGCCGA 60.823 57.895 10.16 0.00 33.30 5.54
1964 1981 3.768757 AGCTGCTTAATCTCAGACACTCT 59.231 43.478 0.00 0.00 32.26 3.24
2018 2035 7.016153 TGGAGCTCTGAAGAATAGGTTTAAA 57.984 36.000 14.64 0.00 0.00 1.52
2114 2131 1.529309 GATCCTCCAGTGGGGCTTC 59.471 63.158 9.92 1.19 36.21 3.86
2170 2187 3.367395 CCTGACGATGTTGTTAGCTCTGA 60.367 47.826 0.00 0.00 0.00 3.27
2294 2311 2.158696 AGGAAGAAGAAACAGCAGCAGT 60.159 45.455 0.00 0.00 0.00 4.40
2338 2367 2.530465 GAAGCAGCAGCAGCAGAAGC 62.530 60.000 12.92 1.77 45.49 3.86
2339 2368 3.362797 GCAGCAGCAGCAGAAGCA 61.363 61.111 4.63 0.00 45.49 3.91
2345 2374 1.080298 CAGCAGCAGAAGCAGAAGAG 58.920 55.000 0.00 0.00 45.49 2.85
2373 2402 2.695127 AGAGGAAGATGAAGCAGCAG 57.305 50.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.376075 CCGTCATCATTGCTAGATCTTATATTT 57.624 33.333 0.00 0.00 0.00 1.40
7 8 8.535335 ACCGTCATCATTGCTAGATCTTATATT 58.465 33.333 0.00 0.00 0.00 1.28
8 9 7.978414 CACCGTCATCATTGCTAGATCTTATAT 59.022 37.037 0.00 0.00 0.00 0.86
9 10 7.176690 TCACCGTCATCATTGCTAGATCTTATA 59.823 37.037 0.00 0.00 0.00 0.98
10 11 6.015095 TCACCGTCATCATTGCTAGATCTTAT 60.015 38.462 0.00 0.00 0.00 1.73
11 12 5.301805 TCACCGTCATCATTGCTAGATCTTA 59.698 40.000 0.00 0.00 0.00 2.10
12 13 4.100035 TCACCGTCATCATTGCTAGATCTT 59.900 41.667 0.00 0.00 0.00 2.40
13 14 3.638627 TCACCGTCATCATTGCTAGATCT 59.361 43.478 0.00 0.00 0.00 2.75
14 15 3.982475 TCACCGTCATCATTGCTAGATC 58.018 45.455 0.00 0.00 0.00 2.75
15 16 4.613925 ATCACCGTCATCATTGCTAGAT 57.386 40.909 0.00 0.00 0.00 1.98
16 17 4.406648 AATCACCGTCATCATTGCTAGA 57.593 40.909 0.00 0.00 0.00 2.43
17 18 5.268544 CAAAATCACCGTCATCATTGCTAG 58.731 41.667 0.00 0.00 0.00 3.42
18 19 4.438608 GCAAAATCACCGTCATCATTGCTA 60.439 41.667 0.00 0.00 38.96 3.49
19 20 3.674138 GCAAAATCACCGTCATCATTGCT 60.674 43.478 0.00 0.00 38.96 3.91
20 21 2.599973 GCAAAATCACCGTCATCATTGC 59.400 45.455 0.00 0.00 35.69 3.56
21 22 4.100707 AGCAAAATCACCGTCATCATTG 57.899 40.909 0.00 0.00 0.00 2.82
22 23 5.415701 ACTTAGCAAAATCACCGTCATCATT 59.584 36.000 0.00 0.00 0.00 2.57
23 24 4.943705 ACTTAGCAAAATCACCGTCATCAT 59.056 37.500 0.00 0.00 0.00 2.45
24 25 4.323417 ACTTAGCAAAATCACCGTCATCA 58.677 39.130 0.00 0.00 0.00 3.07
25 26 4.946784 ACTTAGCAAAATCACCGTCATC 57.053 40.909 0.00 0.00 0.00 2.92
26 27 7.985184 TCTTATACTTAGCAAAATCACCGTCAT 59.015 33.333 0.00 0.00 0.00 3.06
27 28 7.324935 TCTTATACTTAGCAAAATCACCGTCA 58.675 34.615 0.00 0.00 0.00 4.35
28 29 7.766219 TCTTATACTTAGCAAAATCACCGTC 57.234 36.000 0.00 0.00 0.00 4.79
29 30 7.441458 GGATCTTATACTTAGCAAAATCACCGT 59.559 37.037 0.00 0.00 0.00 4.83
30 31 7.441157 TGGATCTTATACTTAGCAAAATCACCG 59.559 37.037 0.00 0.00 0.00 4.94
31 32 8.677148 TGGATCTTATACTTAGCAAAATCACC 57.323 34.615 0.00 0.00 0.00 4.02
32 33 9.937175 GTTGGATCTTATACTTAGCAAAATCAC 57.063 33.333 0.00 0.00 0.00 3.06
33 34 9.679661 TGTTGGATCTTATACTTAGCAAAATCA 57.320 29.630 0.00 0.00 0.00 2.57
35 36 9.686683 ACTGTTGGATCTTATACTTAGCAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
36 37 8.946085 CACTGTTGGATCTTATACTTAGCAAAA 58.054 33.333 0.00 0.00 0.00 2.44
37 38 8.318412 TCACTGTTGGATCTTATACTTAGCAAA 58.682 33.333 0.00 0.00 0.00 3.68
38 39 7.764443 GTCACTGTTGGATCTTATACTTAGCAA 59.236 37.037 0.00 0.00 0.00 3.91
39 40 7.093509 TGTCACTGTTGGATCTTATACTTAGCA 60.094 37.037 0.00 0.00 0.00 3.49
40 41 7.265673 TGTCACTGTTGGATCTTATACTTAGC 58.734 38.462 0.00 0.00 0.00 3.09
41 42 9.088512 GTTGTCACTGTTGGATCTTATACTTAG 57.911 37.037 0.00 0.00 0.00 2.18
42 43 7.758076 CGTTGTCACTGTTGGATCTTATACTTA 59.242 37.037 0.00 0.00 0.00 2.24
43 44 6.590292 CGTTGTCACTGTTGGATCTTATACTT 59.410 38.462 0.00 0.00 0.00 2.24
44 45 6.100004 CGTTGTCACTGTTGGATCTTATACT 58.900 40.000 0.00 0.00 0.00 2.12
45 46 5.220416 GCGTTGTCACTGTTGGATCTTATAC 60.220 44.000 0.00 0.00 0.00 1.47
46 47 4.868171 GCGTTGTCACTGTTGGATCTTATA 59.132 41.667 0.00 0.00 0.00 0.98
47 48 3.684788 GCGTTGTCACTGTTGGATCTTAT 59.315 43.478 0.00 0.00 0.00 1.73
48 49 3.064207 GCGTTGTCACTGTTGGATCTTA 58.936 45.455 0.00 0.00 0.00 2.10
49 50 1.873591 GCGTTGTCACTGTTGGATCTT 59.126 47.619 0.00 0.00 0.00 2.40
50 51 1.070758 AGCGTTGTCACTGTTGGATCT 59.929 47.619 0.00 0.00 0.00 2.75
51 52 1.461127 GAGCGTTGTCACTGTTGGATC 59.539 52.381 0.00 0.00 0.00 3.36
52 53 1.512926 GAGCGTTGTCACTGTTGGAT 58.487 50.000 0.00 0.00 0.00 3.41
53 54 0.531974 GGAGCGTTGTCACTGTTGGA 60.532 55.000 0.00 0.00 0.00 3.53
54 55 0.532862 AGGAGCGTTGTCACTGTTGG 60.533 55.000 0.00 0.00 0.00 3.77
55 56 1.261619 GAAGGAGCGTTGTCACTGTTG 59.738 52.381 0.00 0.00 0.00 3.33
56 57 1.583054 GAAGGAGCGTTGTCACTGTT 58.417 50.000 0.00 0.00 0.00 3.16
57 58 0.249911 GGAAGGAGCGTTGTCACTGT 60.250 55.000 0.00 0.00 0.00 3.55
58 59 0.951040 GGGAAGGAGCGTTGTCACTG 60.951 60.000 0.00 0.00 0.00 3.66
59 60 1.122019 AGGGAAGGAGCGTTGTCACT 61.122 55.000 0.00 0.00 0.00 3.41
60 61 0.670854 GAGGGAAGGAGCGTTGTCAC 60.671 60.000 0.00 0.00 0.00 3.67
61 62 1.671742 GAGGGAAGGAGCGTTGTCA 59.328 57.895 0.00 0.00 0.00 3.58
62 63 1.079057 GGAGGGAAGGAGCGTTGTC 60.079 63.158 0.00 0.00 0.00 3.18
63 64 1.536662 AGGAGGGAAGGAGCGTTGT 60.537 57.895 0.00 0.00 0.00 3.32
64 65 1.219393 GAGGAGGGAAGGAGCGTTG 59.781 63.158 0.00 0.00 0.00 4.10
65 66 1.229209 TGAGGAGGGAAGGAGCGTT 60.229 57.895 0.00 0.00 0.00 4.84
66 67 1.985116 GTGAGGAGGGAAGGAGCGT 60.985 63.158 0.00 0.00 0.00 5.07
67 68 2.726351 GGTGAGGAGGGAAGGAGCG 61.726 68.421 0.00 0.00 0.00 5.03
68 69 2.371259 GGGTGAGGAGGGAAGGAGC 61.371 68.421 0.00 0.00 0.00 4.70
69 70 1.690985 GGGGTGAGGAGGGAAGGAG 60.691 68.421 0.00 0.00 0.00 3.69
70 71 2.182858 GAGGGGTGAGGAGGGAAGGA 62.183 65.000 0.00 0.00 0.00 3.36
71 72 1.690985 GAGGGGTGAGGAGGGAAGG 60.691 68.421 0.00 0.00 0.00 3.46
72 73 1.690985 GGAGGGGTGAGGAGGGAAG 60.691 68.421 0.00 0.00 0.00 3.46
73 74 2.182858 GAGGAGGGGTGAGGAGGGAA 62.183 65.000 0.00 0.00 0.00 3.97
74 75 2.540910 AGGAGGGGTGAGGAGGGA 60.541 66.667 0.00 0.00 0.00 4.20
75 76 2.041405 GAGGAGGGGTGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
76 77 1.687493 GTGAGGAGGGGTGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
77 78 2.055042 CGTGAGGAGGGGTGAGGAG 61.055 68.421 0.00 0.00 0.00 3.69
78 79 2.037367 CGTGAGGAGGGGTGAGGA 59.963 66.667 0.00 0.00 0.00 3.71
79 80 1.608717 CTTCGTGAGGAGGGGTGAGG 61.609 65.000 0.00 0.00 31.14 3.86
80 81 1.893786 CTTCGTGAGGAGGGGTGAG 59.106 63.158 0.00 0.00 31.14 3.51
81 82 2.283529 GCTTCGTGAGGAGGGGTGA 61.284 63.158 0.00 0.00 37.13 4.02
82 83 2.111999 TTGCTTCGTGAGGAGGGGTG 62.112 60.000 0.00 0.00 37.13 4.61
83 84 1.415672 TTTGCTTCGTGAGGAGGGGT 61.416 55.000 0.00 0.00 37.13 4.95
84 85 0.250727 TTTTGCTTCGTGAGGAGGGG 60.251 55.000 0.00 0.00 37.13 4.79
85 86 1.160137 CTTTTGCTTCGTGAGGAGGG 58.840 55.000 0.00 0.00 37.13 4.30
86 87 1.160137 CCTTTTGCTTCGTGAGGAGG 58.840 55.000 0.00 0.00 37.13 4.30
87 88 2.072298 CTCCTTTTGCTTCGTGAGGAG 58.928 52.381 3.57 3.57 45.23 3.69
88 89 1.691976 TCTCCTTTTGCTTCGTGAGGA 59.308 47.619 0.00 0.00 35.36 3.71
89 90 2.072298 CTCTCCTTTTGCTTCGTGAGG 58.928 52.381 0.00 0.00 0.00 3.86
90 91 2.478134 CACTCTCCTTTTGCTTCGTGAG 59.522 50.000 0.00 0.00 0.00 3.51
91 92 2.483876 CACTCTCCTTTTGCTTCGTGA 58.516 47.619 0.00 0.00 0.00 4.35
92 93 1.532868 CCACTCTCCTTTTGCTTCGTG 59.467 52.381 0.00 0.00 0.00 4.35
93 94 1.416401 TCCACTCTCCTTTTGCTTCGT 59.584 47.619 0.00 0.00 0.00 3.85
94 95 2.169832 TCCACTCTCCTTTTGCTTCG 57.830 50.000 0.00 0.00 0.00 3.79
95 96 3.126000 CGATTCCACTCTCCTTTTGCTTC 59.874 47.826 0.00 0.00 0.00 3.86
96 97 3.077359 CGATTCCACTCTCCTTTTGCTT 58.923 45.455 0.00 0.00 0.00 3.91
97 98 2.039084 ACGATTCCACTCTCCTTTTGCT 59.961 45.455 0.00 0.00 0.00 3.91
98 99 2.427506 ACGATTCCACTCTCCTTTTGC 58.572 47.619 0.00 0.00 0.00 3.68
99 100 3.815401 ACAACGATTCCACTCTCCTTTTG 59.185 43.478 0.00 0.00 0.00 2.44
100 101 4.065789 GACAACGATTCCACTCTCCTTTT 58.934 43.478 0.00 0.00 0.00 2.27
101 102 3.071023 TGACAACGATTCCACTCTCCTTT 59.929 43.478 0.00 0.00 0.00 3.11
102 103 2.632996 TGACAACGATTCCACTCTCCTT 59.367 45.455 0.00 0.00 0.00 3.36
103 104 2.248248 TGACAACGATTCCACTCTCCT 58.752 47.619 0.00 0.00 0.00 3.69
104 105 2.743636 TGACAACGATTCCACTCTCC 57.256 50.000 0.00 0.00 0.00 3.71
105 106 4.750098 TCTTTTGACAACGATTCCACTCTC 59.250 41.667 0.00 0.00 0.00 3.20
106 107 4.703897 TCTTTTGACAACGATTCCACTCT 58.296 39.130 0.00 0.00 0.00 3.24
107 108 5.179368 TCATCTTTTGACAACGATTCCACTC 59.821 40.000 0.00 0.00 0.00 3.51
108 109 5.063204 TCATCTTTTGACAACGATTCCACT 58.937 37.500 0.00 0.00 0.00 4.00
109 110 5.356882 TCATCTTTTGACAACGATTCCAC 57.643 39.130 0.00 0.00 0.00 4.02
120 121 5.984601 TGTGTGCCACAGTCATCTTTTGAC 61.985 45.833 0.00 0.00 42.51 3.18
121 122 2.618241 GTGTGCCACAGTCATCTTTTGA 59.382 45.455 0.00 0.00 34.08 2.69
122 123 2.358582 TGTGTGCCACAGTCATCTTTTG 59.641 45.455 0.00 0.00 39.62 2.44
123 124 2.653726 TGTGTGCCACAGTCATCTTTT 58.346 42.857 0.00 0.00 39.62 2.27
124 125 2.346766 TGTGTGCCACAGTCATCTTT 57.653 45.000 0.00 0.00 39.62 2.52
133 134 2.179547 CGCTCAACTGTGTGCCACA 61.180 57.895 0.00 0.00 42.45 4.17
134 135 2.633657 CGCTCAACTGTGTGCCAC 59.366 61.111 0.00 0.00 40.42 5.01
135 136 3.279116 GCGCTCAACTGTGTGCCA 61.279 61.111 0.00 0.00 40.42 4.92
136 137 4.374702 CGCGCTCAACTGTGTGCC 62.375 66.667 5.56 0.00 40.42 5.01
137 138 4.374702 CCGCGCTCAACTGTGTGC 62.375 66.667 5.56 7.14 40.19 4.57
138 139 1.959899 GATCCGCGCTCAACTGTGTG 61.960 60.000 5.56 0.00 0.00 3.82
139 140 1.738099 GATCCGCGCTCAACTGTGT 60.738 57.895 5.56 0.00 0.00 3.72
140 141 1.291184 TTGATCCGCGCTCAACTGTG 61.291 55.000 15.62 0.00 0.00 3.66
141 142 1.005037 TTGATCCGCGCTCAACTGT 60.005 52.632 15.62 0.00 0.00 3.55
142 143 1.421485 GTTGATCCGCGCTCAACTG 59.579 57.895 29.89 7.55 45.74 3.16
143 144 3.876300 GTTGATCCGCGCTCAACT 58.124 55.556 29.89 0.00 45.74 3.16
145 146 0.447406 CATTGTTGATCCGCGCTCAA 59.553 50.000 15.62 15.62 0.00 3.02
146 147 0.673333 ACATTGTTGATCCGCGCTCA 60.673 50.000 5.56 2.48 0.00 4.26
147 148 0.026803 GACATTGTTGATCCGCGCTC 59.973 55.000 5.56 0.00 0.00 5.03
148 149 0.391661 AGACATTGTTGATCCGCGCT 60.392 50.000 5.56 0.00 0.00 5.92
149 150 1.286501 TAGACATTGTTGATCCGCGC 58.713 50.000 0.00 0.00 0.00 6.86
150 151 3.384668 AGATAGACATTGTTGATCCGCG 58.615 45.455 0.00 0.00 0.00 6.46
151 152 4.447054 CAGAGATAGACATTGTTGATCCGC 59.553 45.833 7.78 3.04 0.00 5.54
152 153 5.836347 TCAGAGATAGACATTGTTGATCCG 58.164 41.667 7.78 0.00 0.00 4.18
153 154 8.149647 AGAATCAGAGATAGACATTGTTGATCC 58.850 37.037 7.78 0.00 0.00 3.36
155 156 9.979578 GTAGAATCAGAGATAGACATTGTTGAT 57.020 33.333 0.00 0.00 0.00 2.57
156 157 8.417106 GGTAGAATCAGAGATAGACATTGTTGA 58.583 37.037 0.00 0.00 0.00 3.18
157 158 7.380870 CGGTAGAATCAGAGATAGACATTGTTG 59.619 40.741 0.00 0.00 0.00 3.33
158 159 7.068839 ACGGTAGAATCAGAGATAGACATTGTT 59.931 37.037 0.00 0.00 0.00 2.83
159 160 6.547880 ACGGTAGAATCAGAGATAGACATTGT 59.452 38.462 0.00 0.00 0.00 2.71
160 161 6.976088 ACGGTAGAATCAGAGATAGACATTG 58.024 40.000 0.00 0.00 0.00 2.82
161 162 7.589958 AACGGTAGAATCAGAGATAGACATT 57.410 36.000 0.00 0.00 0.00 2.71
162 163 7.589958 AAACGGTAGAATCAGAGATAGACAT 57.410 36.000 0.00 0.00 0.00 3.06
163 164 7.774157 AGTAAACGGTAGAATCAGAGATAGACA 59.226 37.037 0.00 0.00 0.00 3.41
164 165 8.156994 AGTAAACGGTAGAATCAGAGATAGAC 57.843 38.462 0.00 0.00 0.00 2.59
165 166 9.491675 CTAGTAAACGGTAGAATCAGAGATAGA 57.508 37.037 0.00 0.00 0.00 1.98
166 167 8.231837 GCTAGTAAACGGTAGAATCAGAGATAG 58.768 40.741 0.00 0.00 0.00 2.08
167 168 7.718314 TGCTAGTAAACGGTAGAATCAGAGATA 59.282 37.037 0.00 0.00 0.00 1.98
168 169 6.546403 TGCTAGTAAACGGTAGAATCAGAGAT 59.454 38.462 0.00 0.00 0.00 2.75
169 170 5.884232 TGCTAGTAAACGGTAGAATCAGAGA 59.116 40.000 0.00 0.00 0.00 3.10
170 171 5.972382 GTGCTAGTAAACGGTAGAATCAGAG 59.028 44.000 0.00 0.00 0.00 3.35
171 172 5.163581 GGTGCTAGTAAACGGTAGAATCAGA 60.164 44.000 0.00 0.00 0.00 3.27
172 173 5.041940 GGTGCTAGTAAACGGTAGAATCAG 58.958 45.833 0.00 0.00 0.00 2.90
173 174 4.463539 TGGTGCTAGTAAACGGTAGAATCA 59.536 41.667 0.00 0.00 0.00 2.57
174 175 4.802563 GTGGTGCTAGTAAACGGTAGAATC 59.197 45.833 0.00 0.00 0.00 2.52
175 176 4.221262 TGTGGTGCTAGTAAACGGTAGAAT 59.779 41.667 0.00 0.00 0.00 2.40
176 177 3.573538 TGTGGTGCTAGTAAACGGTAGAA 59.426 43.478 0.00 0.00 0.00 2.10
177 178 3.156293 TGTGGTGCTAGTAAACGGTAGA 58.844 45.455 0.00 0.00 0.00 2.59
178 179 3.057033 ACTGTGGTGCTAGTAAACGGTAG 60.057 47.826 7.38 0.00 0.00 3.18
179 180 2.892852 ACTGTGGTGCTAGTAAACGGTA 59.107 45.455 7.38 0.00 0.00 4.02
180 181 1.690352 ACTGTGGTGCTAGTAAACGGT 59.310 47.619 4.21 4.21 0.00 4.83
181 182 2.450609 ACTGTGGTGCTAGTAAACGG 57.549 50.000 0.00 0.00 0.00 4.44
182 183 2.096417 GCAACTGTGGTGCTAGTAAACG 60.096 50.000 0.00 0.00 0.00 3.60
183 184 2.225727 GGCAACTGTGGTGCTAGTAAAC 59.774 50.000 7.53 0.00 0.00 2.01
184 185 2.500229 GGCAACTGTGGTGCTAGTAAA 58.500 47.619 7.53 0.00 0.00 2.01
185 186 1.606994 CGGCAACTGTGGTGCTAGTAA 60.607 52.381 7.53 0.00 0.00 2.24
186 187 0.037697 CGGCAACTGTGGTGCTAGTA 60.038 55.000 7.53 0.00 0.00 1.82
187 188 1.301716 CGGCAACTGTGGTGCTAGT 60.302 57.895 7.53 0.00 0.00 2.57
188 189 2.680913 GCGGCAACTGTGGTGCTAG 61.681 63.158 7.53 3.83 0.00 3.42
189 190 2.668212 GCGGCAACTGTGGTGCTA 60.668 61.111 7.53 0.00 0.00 3.49
192 193 3.357079 GAGGCGGCAACTGTGGTG 61.357 66.667 13.08 0.00 0.00 4.17
193 194 4.988598 CGAGGCGGCAACTGTGGT 62.989 66.667 13.08 0.00 0.00 4.16
194 195 4.988598 ACGAGGCGGCAACTGTGG 62.989 66.667 13.08 0.00 0.00 4.17
195 196 3.716006 CACGAGGCGGCAACTGTG 61.716 66.667 13.08 10.02 0.00 3.66
205 206 2.184579 GGGTAGACAGCACGAGGC 59.815 66.667 0.00 0.00 45.30 4.70
206 207 1.330655 ATGGGGTAGACAGCACGAGG 61.331 60.000 0.00 0.00 0.00 4.63
207 208 1.338337 CTATGGGGTAGACAGCACGAG 59.662 57.143 0.00 0.00 31.71 4.18
208 209 1.064240 TCTATGGGGTAGACAGCACGA 60.064 52.381 0.00 0.00 34.50 4.35
209 210 1.338337 CTCTATGGGGTAGACAGCACG 59.662 57.143 0.00 0.00 34.50 5.34
210 211 2.667470 TCTCTATGGGGTAGACAGCAC 58.333 52.381 0.00 0.00 34.50 4.40
211 212 3.117131 TCATCTCTATGGGGTAGACAGCA 60.117 47.826 0.00 0.00 34.50 4.41
212 213 3.257127 GTCATCTCTATGGGGTAGACAGC 59.743 52.174 0.00 0.00 34.50 4.40
213 214 4.474394 TGTCATCTCTATGGGGTAGACAG 58.526 47.826 3.00 0.00 34.50 3.51
214 215 4.536295 TGTCATCTCTATGGGGTAGACA 57.464 45.455 3.00 3.00 34.50 3.41
215 216 5.598830 TCTTTGTCATCTCTATGGGGTAGAC 59.401 44.000 0.00 0.00 34.50 2.59
216 217 5.777449 TCTTTGTCATCTCTATGGGGTAGA 58.223 41.667 0.00 0.00 37.09 2.59
217 218 6.462500 CATCTTTGTCATCTCTATGGGGTAG 58.538 44.000 0.00 0.00 33.61 3.18
218 219 5.221722 GCATCTTTGTCATCTCTATGGGGTA 60.222 44.000 0.00 0.00 33.61 3.69
219 220 4.445448 GCATCTTTGTCATCTCTATGGGGT 60.445 45.833 0.00 0.00 33.61 4.95
220 221 4.070716 GCATCTTTGTCATCTCTATGGGG 58.929 47.826 0.00 0.00 33.61 4.96
221 222 4.070716 GGCATCTTTGTCATCTCTATGGG 58.929 47.826 0.00 0.00 33.61 4.00
222 223 4.070716 GGGCATCTTTGTCATCTCTATGG 58.929 47.826 0.00 0.00 33.61 2.74
223 224 4.970711 AGGGCATCTTTGTCATCTCTATG 58.029 43.478 0.00 0.00 0.00 2.23
224 225 5.843421 AGTAGGGCATCTTTGTCATCTCTAT 59.157 40.000 0.00 0.00 0.00 1.98
225 226 5.211973 AGTAGGGCATCTTTGTCATCTCTA 58.788 41.667 0.00 0.00 0.00 2.43
226 227 4.036518 AGTAGGGCATCTTTGTCATCTCT 58.963 43.478 0.00 0.00 0.00 3.10
227 228 4.376146 GAGTAGGGCATCTTTGTCATCTC 58.624 47.826 0.00 0.00 0.00 2.75
228 229 3.135530 GGAGTAGGGCATCTTTGTCATCT 59.864 47.826 0.00 0.00 0.00 2.90
229 230 3.471680 GGAGTAGGGCATCTTTGTCATC 58.528 50.000 0.00 0.00 0.00 2.92
230 231 2.158900 CGGAGTAGGGCATCTTTGTCAT 60.159 50.000 0.00 0.00 0.00 3.06
231 232 1.207089 CGGAGTAGGGCATCTTTGTCA 59.793 52.381 0.00 0.00 0.00 3.58
232 233 1.207329 ACGGAGTAGGGCATCTTTGTC 59.793 52.381 0.00 0.00 41.94 3.18
233 234 1.066143 CACGGAGTAGGGCATCTTTGT 60.066 52.381 0.00 0.00 41.61 2.83
234 235 1.656652 CACGGAGTAGGGCATCTTTG 58.343 55.000 0.00 0.00 41.61 2.77
235 236 0.541863 CCACGGAGTAGGGCATCTTT 59.458 55.000 0.00 0.00 41.61 2.52
236 237 0.325296 TCCACGGAGTAGGGCATCTT 60.325 55.000 0.00 0.00 41.61 2.40
237 238 1.043673 GTCCACGGAGTAGGGCATCT 61.044 60.000 0.00 0.00 41.61 2.90
238 239 1.327690 TGTCCACGGAGTAGGGCATC 61.328 60.000 0.00 0.00 41.61 3.91
239 240 0.691078 ATGTCCACGGAGTAGGGCAT 60.691 55.000 0.00 0.00 44.30 4.40
240 241 1.305802 ATGTCCACGGAGTAGGGCA 60.306 57.895 0.00 0.00 44.44 5.36
241 242 1.144057 CATGTCCACGGAGTAGGGC 59.856 63.158 0.00 0.00 41.61 5.19
242 243 1.414158 ATCATGTCCACGGAGTAGGG 58.586 55.000 0.00 0.00 41.61 3.53
243 244 4.341235 TCTTTATCATGTCCACGGAGTAGG 59.659 45.833 0.00 0.00 41.61 3.18
244 245 5.282510 GTCTTTATCATGTCCACGGAGTAG 58.717 45.833 0.00 0.00 41.61 2.57
245 246 4.201980 CGTCTTTATCATGTCCACGGAGTA 60.202 45.833 0.00 0.00 41.61 2.59
247 248 3.116300 CGTCTTTATCATGTCCACGGAG 58.884 50.000 0.00 0.00 0.00 4.63
248 249 2.756207 TCGTCTTTATCATGTCCACGGA 59.244 45.455 0.00 0.00 0.00 4.69
249 250 3.159353 TCGTCTTTATCATGTCCACGG 57.841 47.619 0.00 0.00 0.00 4.94
250 251 3.490896 CCATCGTCTTTATCATGTCCACG 59.509 47.826 0.00 0.00 0.00 4.94
251 252 3.248602 GCCATCGTCTTTATCATGTCCAC 59.751 47.826 0.00 0.00 0.00 4.02
252 253 3.466836 GCCATCGTCTTTATCATGTCCA 58.533 45.455 0.00 0.00 0.00 4.02
253 254 2.476619 CGCCATCGTCTTTATCATGTCC 59.523 50.000 0.00 0.00 0.00 4.02
254 255 3.381045 TCGCCATCGTCTTTATCATGTC 58.619 45.455 0.00 0.00 36.96 3.06
255 256 3.068165 TCTCGCCATCGTCTTTATCATGT 59.932 43.478 0.00 0.00 36.96 3.21
256 257 3.642705 TCTCGCCATCGTCTTTATCATG 58.357 45.455 0.00 0.00 36.96 3.07
257 258 3.570125 TCTCTCGCCATCGTCTTTATCAT 59.430 43.478 0.00 0.00 36.96 2.45
258 259 2.949644 TCTCTCGCCATCGTCTTTATCA 59.050 45.455 0.00 0.00 36.96 2.15
259 260 3.627732 TCTCTCGCCATCGTCTTTATC 57.372 47.619 0.00 0.00 36.96 1.75
260 261 4.098044 TCTTTCTCTCGCCATCGTCTTTAT 59.902 41.667 0.00 0.00 36.96 1.40
261 262 3.442625 TCTTTCTCTCGCCATCGTCTTTA 59.557 43.478 0.00 0.00 36.96 1.85
262 263 2.231478 TCTTTCTCTCGCCATCGTCTTT 59.769 45.455 0.00 0.00 36.96 2.52
263 264 1.819288 TCTTTCTCTCGCCATCGTCTT 59.181 47.619 0.00 0.00 36.96 3.01
264 265 1.403679 CTCTTTCTCTCGCCATCGTCT 59.596 52.381 0.00 0.00 36.96 4.18
265 266 1.402259 TCTCTTTCTCTCGCCATCGTC 59.598 52.381 0.00 0.00 36.96 4.20
266 267 1.464734 TCTCTTTCTCTCGCCATCGT 58.535 50.000 0.00 0.00 36.96 3.73
267 268 2.098280 TCTTCTCTTTCTCTCGCCATCG 59.902 50.000 0.00 0.00 0.00 3.84
268 269 3.119316 TGTCTTCTCTTTCTCTCGCCATC 60.119 47.826 0.00 0.00 0.00 3.51
269 270 2.828520 TGTCTTCTCTTTCTCTCGCCAT 59.171 45.455 0.00 0.00 0.00 4.40
270 271 2.239400 TGTCTTCTCTTTCTCTCGCCA 58.761 47.619 0.00 0.00 0.00 5.69
271 272 3.249917 CTTGTCTTCTCTTTCTCTCGCC 58.750 50.000 0.00 0.00 0.00 5.54
272 273 3.057174 TCCTTGTCTTCTCTTTCTCTCGC 60.057 47.826 0.00 0.00 0.00 5.03
273 274 4.775058 TCCTTGTCTTCTCTTTCTCTCG 57.225 45.455 0.00 0.00 0.00 4.04
274 275 6.530019 AGATCCTTGTCTTCTCTTTCTCTC 57.470 41.667 0.00 0.00 0.00 3.20
275 276 6.269769 ACAAGATCCTTGTCTTCTCTTTCTCT 59.730 38.462 6.53 0.00 36.33 3.10
276 277 6.463360 ACAAGATCCTTGTCTTCTCTTTCTC 58.537 40.000 6.53 0.00 36.33 2.87
277 278 6.432403 ACAAGATCCTTGTCTTCTCTTTCT 57.568 37.500 6.53 0.00 36.33 2.52
278 279 6.128688 CGAACAAGATCCTTGTCTTCTCTTTC 60.129 42.308 12.10 4.02 36.33 2.62
279 280 5.698545 CGAACAAGATCCTTGTCTTCTCTTT 59.301 40.000 12.10 0.00 36.33 2.52
280 281 5.221541 ACGAACAAGATCCTTGTCTTCTCTT 60.222 40.000 12.10 0.00 36.33 2.85
281 282 4.282195 ACGAACAAGATCCTTGTCTTCTCT 59.718 41.667 12.10 0.00 36.33 3.10
282 283 4.561105 ACGAACAAGATCCTTGTCTTCTC 58.439 43.478 12.10 6.12 36.33 2.87
283 284 4.608948 ACGAACAAGATCCTTGTCTTCT 57.391 40.909 12.10 0.00 36.33 2.85
284 285 5.236478 TCAAACGAACAAGATCCTTGTCTTC 59.764 40.000 12.10 7.02 36.33 2.87
285 286 5.123227 TCAAACGAACAAGATCCTTGTCTT 58.877 37.500 12.10 0.00 38.95 3.01
286 287 4.703897 TCAAACGAACAAGATCCTTGTCT 58.296 39.130 12.10 4.15 0.00 3.41
287 288 5.236478 TCTTCAAACGAACAAGATCCTTGTC 59.764 40.000 12.10 6.16 0.00 3.18
288 289 5.123227 TCTTCAAACGAACAAGATCCTTGT 58.877 37.500 6.53 6.53 0.00 3.16
289 290 5.673337 TCTTCAAACGAACAAGATCCTTG 57.327 39.130 5.26 5.26 0.00 3.61
290 291 6.055588 TCTTCTTCAAACGAACAAGATCCTT 58.944 36.000 0.00 0.00 26.74 3.36
291 292 5.611374 TCTTCTTCAAACGAACAAGATCCT 58.389 37.500 0.00 0.00 26.74 3.24
292 293 5.106908 CCTCTTCTTCAAACGAACAAGATCC 60.107 44.000 0.00 0.00 30.21 3.36
293 294 5.615764 GCCTCTTCTTCAAACGAACAAGATC 60.616 44.000 0.00 0.00 30.21 2.75
294 295 4.214332 GCCTCTTCTTCAAACGAACAAGAT 59.786 41.667 0.00 0.00 30.21 2.40
295 296 3.560068 GCCTCTTCTTCAAACGAACAAGA 59.440 43.478 0.00 0.00 29.96 3.02
296 297 3.312421 TGCCTCTTCTTCAAACGAACAAG 59.688 43.478 0.00 0.00 0.00 3.16
297 298 3.275143 TGCCTCTTCTTCAAACGAACAA 58.725 40.909 0.00 0.00 0.00 2.83
298 299 2.912771 TGCCTCTTCTTCAAACGAACA 58.087 42.857 0.00 0.00 0.00 3.18
299 300 4.467735 GAATGCCTCTTCTTCAAACGAAC 58.532 43.478 0.00 0.00 0.00 3.95
300 301 3.186409 CGAATGCCTCTTCTTCAAACGAA 59.814 43.478 0.00 0.00 0.00 3.85
301 302 2.736721 CGAATGCCTCTTCTTCAAACGA 59.263 45.455 0.00 0.00 0.00 3.85
302 303 2.159653 CCGAATGCCTCTTCTTCAAACG 60.160 50.000 0.00 0.00 0.00 3.60
303 304 2.414691 GCCGAATGCCTCTTCTTCAAAC 60.415 50.000 0.00 0.00 0.00 2.93
304 305 1.812571 GCCGAATGCCTCTTCTTCAAA 59.187 47.619 0.00 0.00 0.00 2.69
305 306 1.271325 TGCCGAATGCCTCTTCTTCAA 60.271 47.619 0.00 0.00 40.16 2.69
306 307 0.324614 TGCCGAATGCCTCTTCTTCA 59.675 50.000 0.00 0.00 40.16 3.02
307 308 1.012841 CTGCCGAATGCCTCTTCTTC 58.987 55.000 0.00 0.00 40.16 2.87
308 309 0.326264 ACTGCCGAATGCCTCTTCTT 59.674 50.000 0.00 0.00 40.16 2.52
309 310 0.392193 CACTGCCGAATGCCTCTTCT 60.392 55.000 0.00 0.00 40.16 2.85
310 311 1.986575 GCACTGCCGAATGCCTCTTC 61.987 60.000 0.00 0.00 40.16 2.87
311 312 2.042831 GCACTGCCGAATGCCTCTT 61.043 57.895 0.00 0.00 40.16 2.85
312 313 2.437359 GCACTGCCGAATGCCTCT 60.437 61.111 0.00 0.00 40.16 3.69
313 314 3.869272 CGCACTGCCGAATGCCTC 61.869 66.667 0.00 0.00 38.69 4.70
314 315 4.704833 ACGCACTGCCGAATGCCT 62.705 61.111 0.00 0.00 38.69 4.75
315 316 4.166011 GACGCACTGCCGAATGCC 62.166 66.667 0.00 0.00 38.69 4.40
316 317 2.257286 ATTGACGCACTGCCGAATGC 62.257 55.000 0.00 0.00 41.77 3.56
317 318 0.247814 GATTGACGCACTGCCGAATG 60.248 55.000 0.00 0.00 0.00 2.67
318 319 1.695893 CGATTGACGCACTGCCGAAT 61.696 55.000 0.00 0.00 34.51 3.34
319 320 2.379634 CGATTGACGCACTGCCGAA 61.380 57.895 0.00 0.00 34.51 4.30
320 321 2.757155 TTCGATTGACGCACTGCCGA 62.757 55.000 0.00 0.00 42.26 5.54
321 322 1.896339 TTTCGATTGACGCACTGCCG 61.896 55.000 0.00 0.00 42.26 5.69
322 323 0.237235 TTTTCGATTGACGCACTGCC 59.763 50.000 0.00 0.00 42.26 4.85
323 324 1.708680 GTTTTTCGATTGACGCACTGC 59.291 47.619 0.00 0.00 42.26 4.40
324 325 2.966708 CTGTTTTTCGATTGACGCACTG 59.033 45.455 0.00 0.00 42.26 3.66
325 326 2.612212 ACTGTTTTTCGATTGACGCACT 59.388 40.909 0.00 0.00 42.26 4.40
326 327 2.713976 CACTGTTTTTCGATTGACGCAC 59.286 45.455 0.00 0.00 42.26 5.34
327 328 2.286713 CCACTGTTTTTCGATTGACGCA 60.287 45.455 0.00 0.00 42.26 5.24
328 329 2.307049 CCACTGTTTTTCGATTGACGC 58.693 47.619 0.00 0.00 42.26 5.19
329 330 2.307049 GCCACTGTTTTTCGATTGACG 58.693 47.619 0.00 0.00 44.09 4.35
330 331 2.661594 GGCCACTGTTTTTCGATTGAC 58.338 47.619 0.00 0.00 0.00 3.18
331 332 1.265635 CGGCCACTGTTTTTCGATTGA 59.734 47.619 2.24 0.00 0.00 2.57
332 333 1.265635 TCGGCCACTGTTTTTCGATTG 59.734 47.619 2.24 0.00 0.00 2.67
333 334 1.265905 GTCGGCCACTGTTTTTCGATT 59.734 47.619 2.24 0.00 0.00 3.34
334 335 0.872388 GTCGGCCACTGTTTTTCGAT 59.128 50.000 2.24 0.00 0.00 3.59
335 336 0.179067 AGTCGGCCACTGTTTTTCGA 60.179 50.000 2.24 0.00 32.26 3.71
336 337 1.193874 GTAGTCGGCCACTGTTTTTCG 59.806 52.381 15.55 0.00 36.43 3.46
337 338 1.193874 CGTAGTCGGCCACTGTTTTTC 59.806 52.381 15.55 2.33 36.43 2.29
338 339 1.223187 CGTAGTCGGCCACTGTTTTT 58.777 50.000 15.55 0.00 36.43 1.94
339 340 1.226030 GCGTAGTCGGCCACTGTTTT 61.226 55.000 15.55 0.00 36.43 2.43
340 341 1.666872 GCGTAGTCGGCCACTGTTT 60.667 57.895 15.55 0.00 36.43 2.83
341 342 2.048503 GCGTAGTCGGCCACTGTT 60.049 61.111 15.55 0.00 36.43 3.16
342 343 3.282745 CTGCGTAGTCGGCCACTGT 62.283 63.158 15.55 0.00 36.43 3.55
343 344 2.507102 CTGCGTAGTCGGCCACTG 60.507 66.667 15.55 3.96 36.43 3.66
344 345 3.760035 CCTGCGTAGTCGGCCACT 61.760 66.667 2.24 8.36 39.41 4.00
347 348 2.436087 ATATGCCTGCGTAGTCGGCC 62.436 60.000 0.00 0.00 43.12 6.13
348 349 0.242825 TATATGCCTGCGTAGTCGGC 59.757 55.000 0.00 0.00 44.02 5.54
349 350 1.268625 TGTATATGCCTGCGTAGTCGG 59.731 52.381 0.00 0.00 37.56 4.79
350 351 2.316792 GTGTATATGCCTGCGTAGTCG 58.683 52.381 0.00 0.00 40.37 4.18
351 352 2.316792 CGTGTATATGCCTGCGTAGTC 58.683 52.381 0.00 0.00 0.00 2.59
352 353 1.000607 CCGTGTATATGCCTGCGTAGT 60.001 52.381 0.00 0.00 0.00 2.73
353 354 1.698165 CCGTGTATATGCCTGCGTAG 58.302 55.000 0.00 0.00 0.00 3.51
354 355 0.319211 GCCGTGTATATGCCTGCGTA 60.319 55.000 0.00 0.00 0.00 4.42
355 356 1.594293 GCCGTGTATATGCCTGCGT 60.594 57.895 0.00 0.00 0.00 5.24
356 357 2.657757 CGCCGTGTATATGCCTGCG 61.658 63.158 4.81 4.81 0.00 5.18
357 358 1.594293 ACGCCGTGTATATGCCTGC 60.594 57.895 0.00 0.00 0.00 4.85
358 359 1.221466 CCACGCCGTGTATATGCCTG 61.221 60.000 16.99 0.00 0.00 4.85
359 360 1.069090 CCACGCCGTGTATATGCCT 59.931 57.895 16.99 0.00 0.00 4.75
360 361 0.812412 AACCACGCCGTGTATATGCC 60.812 55.000 16.99 0.00 0.00 4.40
361 362 0.303493 CAACCACGCCGTGTATATGC 59.697 55.000 16.99 0.00 0.00 3.14
362 363 1.858458 CTCAACCACGCCGTGTATATG 59.142 52.381 16.99 9.16 0.00 1.78
363 364 1.805120 GCTCAACCACGCCGTGTATAT 60.805 52.381 16.99 0.00 0.00 0.86
364 365 0.458889 GCTCAACCACGCCGTGTATA 60.459 55.000 16.99 0.00 0.00 1.47
365 366 1.740296 GCTCAACCACGCCGTGTAT 60.740 57.895 16.99 0.42 0.00 2.29
366 367 2.356553 GCTCAACCACGCCGTGTA 60.357 61.111 16.99 0.00 0.00 2.90
367 368 4.539083 TGCTCAACCACGCCGTGT 62.539 61.111 16.99 1.32 0.00 4.49
368 369 3.716006 CTGCTCAACCACGCCGTG 61.716 66.667 10.95 10.95 0.00 4.94
372 373 3.730761 CTGGCTGCTCAACCACGC 61.731 66.667 0.00 0.00 0.00 5.34
373 374 3.730761 GCTGGCTGCTCAACCACG 61.731 66.667 9.31 0.00 38.95 4.94
374 375 3.730761 CGCTGGCTGCTCAACCAC 61.731 66.667 14.58 0.00 40.11 4.16
377 378 4.704833 TCCCGCTGGCTGCTCAAC 62.705 66.667 14.58 0.00 40.11 3.18
378 379 4.399395 CTCCCGCTGGCTGCTCAA 62.399 66.667 14.58 0.00 40.11 3.02
380 381 4.828925 GTCTCCCGCTGGCTGCTC 62.829 72.222 14.58 0.00 40.11 4.26
385 386 4.899239 CATCCGTCTCCCGCTGGC 62.899 72.222 0.00 0.00 34.38 4.85
386 387 2.427540 GATCATCCGTCTCCCGCTGG 62.428 65.000 0.00 0.00 34.38 4.85
387 388 1.006805 GATCATCCGTCTCCCGCTG 60.007 63.158 0.00 0.00 34.38 5.18
388 389 0.829602 ATGATCATCCGTCTCCCGCT 60.830 55.000 1.18 0.00 34.38 5.52
389 390 0.389166 GATGATCATCCGTCTCCCGC 60.389 60.000 22.91 0.00 34.38 6.13
390 391 1.252175 AGATGATCATCCGTCTCCCG 58.748 55.000 28.23 0.00 38.58 5.14
391 392 2.757868 CCTAGATGATCATCCGTCTCCC 59.242 54.545 28.23 5.46 38.58 4.30
392 393 2.757868 CCCTAGATGATCATCCGTCTCC 59.242 54.545 28.23 6.17 38.58 3.71
393 394 2.165437 GCCCTAGATGATCATCCGTCTC 59.835 54.545 28.23 13.76 38.58 3.36
394 395 2.175202 GCCCTAGATGATCATCCGTCT 58.825 52.381 28.23 15.59 38.58 4.18
395 396 1.135257 CGCCCTAGATGATCATCCGTC 60.135 57.143 28.23 14.16 38.58 4.79
396 397 0.891373 CGCCCTAGATGATCATCCGT 59.109 55.000 28.23 15.80 38.58 4.69
397 398 0.891373 ACGCCCTAGATGATCATCCG 59.109 55.000 28.23 24.71 38.58 4.18
398 399 1.620819 ACACGCCCTAGATGATCATCC 59.379 52.381 28.23 13.96 38.58 3.51
399 400 3.393089 AACACGCCCTAGATGATCATC 57.607 47.619 25.42 25.42 38.09 2.92
400 401 3.470709 CAAACACGCCCTAGATGATCAT 58.529 45.455 8.25 8.25 0.00 2.45
401 402 2.419990 CCAAACACGCCCTAGATGATCA 60.420 50.000 0.00 0.00 0.00 2.92
402 403 2.213499 CCAAACACGCCCTAGATGATC 58.787 52.381 0.00 0.00 0.00 2.92
403 404 1.559682 ACCAAACACGCCCTAGATGAT 59.440 47.619 0.00 0.00 0.00 2.45
404 405 0.981183 ACCAAACACGCCCTAGATGA 59.019 50.000 0.00 0.00 0.00 2.92
405 406 1.468520 CAACCAAACACGCCCTAGATG 59.531 52.381 0.00 0.00 0.00 2.90
465 466 2.132996 CCAGGCAACCAAACAGGCA 61.133 57.895 0.00 0.00 43.14 4.75
655 657 2.437716 GAATTTGGCGCCGGGAGA 60.438 61.111 23.90 0.00 0.00 3.71
656 658 3.876198 CGAATTTGGCGCCGGGAG 61.876 66.667 23.90 7.01 0.00 4.30
703 705 1.360393 AAGAAAGGGGGACAGTGGCA 61.360 55.000 0.00 0.00 0.00 4.92
802 814 3.200593 GCACCAGATCAGCCGCAG 61.201 66.667 0.00 0.00 0.00 5.18
985 1001 3.490419 GCGTCCATAACCTAGTCGACATT 60.490 47.826 19.50 8.80 0.00 2.71
1042 1058 1.331756 CCATGCCTGAATCGCACTAAC 59.668 52.381 0.00 0.00 39.49 2.34
1049 1065 2.019249 ACATGAACCATGCCTGAATCG 58.981 47.619 0.00 0.00 44.80 3.34
1063 1079 3.890756 ACTCTTTGGTGCATGAACATGAA 59.109 39.130 17.40 5.20 41.20 2.57
1116 1132 2.621929 CCGGGGAAACAATGGACCATAA 60.622 50.000 7.59 0.00 0.00 1.90
1197 1213 5.889853 TGCTCTTTTCATTCTAAGCATCCAT 59.110 36.000 0.00 0.00 35.02 3.41
1263 1279 6.317140 CACTGGTGTTGATGCTATCTTGTAAT 59.683 38.462 0.00 0.00 0.00 1.89
1428 1444 2.711547 TGGTCTCCCGATCATCTCTCTA 59.288 50.000 0.00 0.00 0.00 2.43
1429 1445 1.496857 TGGTCTCCCGATCATCTCTCT 59.503 52.381 0.00 0.00 0.00 3.10
1441 1457 1.690633 TCTGGCCAGATGGTCTCCC 60.691 63.158 32.00 0.00 41.34 4.30
1509 1525 9.577110 CATCAAAAGTGTATATTGTCAATGCTT 57.423 29.630 8.39 2.77 0.00 3.91
1532 1548 6.147581 CACAATACAAGCATATCAAGCCATC 58.852 40.000 0.00 0.00 0.00 3.51
1858 1874 1.070786 GTGGAAGAACACTCGGCCA 59.929 57.895 2.24 0.00 38.32 5.36
1864 1880 1.421646 CCTGAAGGGTGGAAGAACACT 59.578 52.381 0.00 0.00 41.09 3.55
1964 1981 5.652891 CCTCTCAACAGTTACTCTAAGGCTA 59.347 44.000 0.00 0.00 0.00 3.93
2018 2035 3.436180 GGAATGGCTTCTGATCCAGGATT 60.436 47.826 2.53 0.00 35.57 3.01
2114 2131 1.354337 CCTCAGGCACGTGTTCATCG 61.354 60.000 18.38 1.88 0.00 3.84
2294 2311 5.080337 TCTTCCTCTTCTTCTGTGCTTCTA 58.920 41.667 0.00 0.00 0.00 2.10
2338 2367 5.421693 TCTTCCTCTTCATCTTCCTCTTCTG 59.578 44.000 0.00 0.00 0.00 3.02
2339 2368 5.588845 TCTTCCTCTTCATCTTCCTCTTCT 58.411 41.667 0.00 0.00 0.00 2.85
2345 2374 4.815846 GCTTCATCTTCCTCTTCATCTTCC 59.184 45.833 0.00 0.00 0.00 3.46
2373 2402 0.759346 AGGGGATAGTTCATCGGTGC 59.241 55.000 0.00 0.00 34.12 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.