Multiple sequence alignment - TraesCS5D01G337800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G337800 chr5D 100.000 7131 0 0 1 7131 426295827 426302957 0.000000e+00 13169.0
1 TraesCS5D01G337800 chr5D 100.000 57 0 0 5657 5713 426301456 426301512 9.780000e-19 106.0
2 TraesCS5D01G337800 chr5D 100.000 57 0 0 5630 5686 426301483 426301539 9.780000e-19 106.0
3 TraesCS5D01G337800 chr5D 100.000 30 0 0 5684 5713 426301456 426301485 1.000000e-03 56.5
4 TraesCS5D01G337800 chr5D 100.000 30 0 0 5630 5659 426301510 426301539 1.000000e-03 56.5
5 TraesCS5D01G337800 chr5B 90.909 2354 133 38 3347 5660 516096928 516099240 0.000000e+00 3086.0
6 TraesCS5D01G337800 chr5B 95.752 1742 53 6 1 1732 516092899 516094629 0.000000e+00 2787.0
7 TraesCS5D01G337800 chr5B 88.454 970 79 18 1738 2691 516094669 516095621 0.000000e+00 1140.0
8 TraesCS5D01G337800 chr5B 83.874 1079 51 31 6116 7131 516099672 516100690 0.000000e+00 915.0
9 TraesCS5D01G337800 chr5B 92.910 409 21 3 5700 6107 516099226 516099627 7.970000e-164 588.0
10 TraesCS5D01G337800 chr5B 89.256 363 25 4 2677 3038 516095644 516095993 6.570000e-120 442.0
11 TraesCS5D01G337800 chr5B 91.388 209 18 0 3145 3353 516096034 516096242 3.260000e-73 287.0
12 TraesCS5D01G337800 chr5A 94.641 1698 60 13 1 1693 540394298 540395969 0.000000e+00 2603.0
13 TraesCS5D01G337800 chr5A 89.992 1299 101 15 3347 4636 540398495 540399773 0.000000e+00 1652.0
14 TraesCS5D01G337800 chr5A 93.461 994 52 9 4628 5617 540399929 540400913 0.000000e+00 1463.0
15 TraesCS5D01G337800 chr5A 88.211 967 76 25 1738 2691 540396229 540397170 0.000000e+00 1120.0
16 TraesCS5D01G337800 chr5A 86.508 756 57 22 6115 6852 540401391 540402119 0.000000e+00 789.0
17 TraesCS5D01G337800 chr5A 87.040 679 45 12 2677 3353 540397188 540397825 0.000000e+00 726.0
18 TraesCS5D01G337800 chr5A 91.457 398 22 5 5718 6113 540400965 540401352 2.930000e-148 536.0
19 TraesCS5D01G337800 chr5A 81.645 681 87 19 3068 3723 540396503 540397170 1.360000e-146 531.0
20 TraesCS5D01G337800 chr7D 86.391 338 37 2 1035 1372 8975056 8974728 1.890000e-95 361.0
21 TraesCS5D01G337800 chr7D 87.446 231 25 2 1035 1265 615365831 615365605 5.490000e-66 263.0
22 TraesCS5D01G337800 chr7D 91.772 158 12 1 1494 1651 8974699 8974543 1.200000e-52 219.0
23 TraesCS5D01G337800 chr7D 95.062 81 4 0 1571 1651 615365502 615365422 2.090000e-25 128.0
24 TraesCS5D01G337800 chr2D 89.529 191 19 1 1173 1363 30410090 30410279 2.570000e-59 241.0
25 TraesCS5D01G337800 chr3A 91.139 158 14 0 1494 1651 382372161 382372004 1.560000e-51 215.0
26 TraesCS5D01G337800 chr6D 87.963 108 10 3 6857 6964 211446277 211446173 2.700000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G337800 chr5D 426295827 426302957 7130 False 2698.800000 13169 100.000000 1 7131 5 chr5D.!!$F1 7130
1 TraesCS5D01G337800 chr5B 516092899 516100690 7791 False 1320.714286 3086 90.363286 1 7131 7 chr5B.!!$F1 7130
2 TraesCS5D01G337800 chr5A 540394298 540402119 7821 False 1177.500000 2603 89.119375 1 6852 8 chr5A.!!$F1 6851
3 TraesCS5D01G337800 chr7D 8974543 8975056 513 True 290.000000 361 89.081500 1035 1651 2 chr7D.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 957 0.657840 CGATCATTTTGGCGGGAGAC 59.342 55.000 0.0 0.0 39.51 3.36 F
1030 1045 0.911525 CTCCTCCTTCCAGGCCTTCA 60.912 60.000 0.0 0.0 34.61 3.02 F
1105 1120 1.335415 CGGTGCTCTATGACCTCATCG 60.335 57.143 0.0 0.0 37.76 3.84 F
2140 2377 0.540923 AGGCAAGAGATGTGCTCCTC 59.459 55.000 0.0 0.0 45.10 3.71 F
2635 2882 0.253044 CGGTCACCCTCCAATCACAT 59.747 55.000 0.0 0.0 0.00 3.21 F
3661 4655 0.040204 ATGAGTTTCTTGGCCCCAGG 59.960 55.000 0.0 0.0 0.00 4.45 F
3663 4657 0.696501 GAGTTTCTTGGCCCCAGGTA 59.303 55.000 0.0 0.0 0.00 3.08 F
5406 6602 0.498095 GATGTTGTTGTGTTTGCGCG 59.502 50.000 0.0 0.0 0.00 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2357 0.252479 AGGAGCACATCTCTTGCCTG 59.748 55.000 0.00 0.0 41.18 4.85 R
2121 2358 0.540923 GAGGAGCACATCTCTTGCCT 59.459 55.000 0.00 0.0 41.18 4.75 R
2523 2768 1.035932 ATGCAATGCCCTCTGCTCAC 61.036 55.000 1.53 0.0 42.00 3.51 R
3654 4648 0.330267 TAAGGCTTGTTACCTGGGGC 59.670 55.000 10.69 0.0 37.67 5.80 R
3947 4954 0.859232 CGAGTCACGTTTCCACTTGG 59.141 55.000 0.00 0.0 37.22 3.61 R
5127 6307 1.068194 GGACAGAGAGTTCACCTGACG 60.068 57.143 0.00 0.0 0.00 4.35 R
5472 6668 1.201647 CTTTTGTCTGCAGCATGGGAG 59.798 52.381 9.47 0.0 35.86 4.30 R
6452 7726 0.107165 ATTTTCAGTAGAGGCCCGGC 60.107 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 230 2.203788 TCCTGCAGGTCGAGGGTT 60.204 61.111 31.58 0.00 36.34 4.11
689 693 4.783621 ACTGCATCATGGCGGCGT 62.784 61.111 9.37 0.00 44.09 5.68
722 729 2.174319 GGAATCCAACGCGAGGAGC 61.174 63.158 24.34 19.11 38.83 4.70
758 765 1.146359 TGGACTAGCCGGGCTATTAGA 59.854 52.381 27.90 8.77 40.54 2.10
769 776 3.181465 CGGGCTATTAGACACATGAGGTT 60.181 47.826 0.00 0.00 0.00 3.50
811 818 0.663153 GGCGTGAATATGGGCTTGAC 59.337 55.000 0.00 0.00 0.00 3.18
856 864 4.823989 GGGCTTGATGACTTGCATATAGTT 59.176 41.667 0.00 0.00 37.34 2.24
885 893 4.023137 CCCAACAGGCCCATCAAG 57.977 61.111 0.00 0.00 0.00 3.02
948 957 0.657840 CGATCATTTTGGCGGGAGAC 59.342 55.000 0.00 0.00 39.51 3.36
1027 1042 2.690510 GCTCCTCCTTCCAGGCCT 60.691 66.667 0.00 0.00 34.61 5.19
1030 1045 0.911525 CTCCTCCTTCCAGGCCTTCA 60.912 60.000 0.00 0.00 34.61 3.02
1095 1110 4.143333 AACGCGCCGGTGCTCTAT 62.143 61.111 35.04 16.69 34.43 1.98
1102 1117 1.676678 GCCGGTGCTCTATGACCTCA 61.677 60.000 1.90 0.00 33.53 3.86
1105 1120 1.335415 CGGTGCTCTATGACCTCATCG 60.335 57.143 0.00 0.00 37.76 3.84
1666 1681 2.114411 GCCGTTTCCTGTTCCCCA 59.886 61.111 0.00 0.00 0.00 4.96
1668 1683 1.602605 CCGTTTCCTGTTCCCCACC 60.603 63.158 0.00 0.00 0.00 4.61
1716 1731 9.224267 GATGATGTATTATGCATGTTAGGTTCT 57.776 33.333 10.16 0.00 0.00 3.01
1813 2045 4.832266 AGTCATAACAATGCCAAGAAACCA 59.168 37.500 0.00 0.00 0.00 3.67
1827 2059 5.179182 CCAAGAAACCAACCACAAATTATGC 59.821 40.000 0.00 0.00 0.00 3.14
1848 2080 3.500680 GCTGTCCTTCGTTTTCCATTACA 59.499 43.478 0.00 0.00 0.00 2.41
1849 2081 4.156008 GCTGTCCTTCGTTTTCCATTACAT 59.844 41.667 0.00 0.00 0.00 2.29
1915 2150 2.510613 TGAAATCCAACCGAAAGTCCC 58.489 47.619 0.00 0.00 0.00 4.46
1916 2151 2.107552 TGAAATCCAACCGAAAGTCCCT 59.892 45.455 0.00 0.00 0.00 4.20
1917 2152 2.200373 AATCCAACCGAAAGTCCCTG 57.800 50.000 0.00 0.00 0.00 4.45
1920 2155 1.491332 TCCAACCGAAAGTCCCTGAAA 59.509 47.619 0.00 0.00 0.00 2.69
1921 2156 2.092321 TCCAACCGAAAGTCCCTGAAAA 60.092 45.455 0.00 0.00 0.00 2.29
1922 2157 2.293399 CCAACCGAAAGTCCCTGAAAAG 59.707 50.000 0.00 0.00 0.00 2.27
1923 2158 2.271944 ACCGAAAGTCCCTGAAAAGG 57.728 50.000 0.00 0.00 0.00 3.11
1924 2159 1.772453 ACCGAAAGTCCCTGAAAAGGA 59.228 47.619 0.00 0.00 0.00 3.36
1925 2160 2.375509 ACCGAAAGTCCCTGAAAAGGAT 59.624 45.455 0.00 0.00 35.38 3.24
1926 2161 2.749621 CCGAAAGTCCCTGAAAAGGATG 59.250 50.000 0.00 0.00 35.38 3.51
1927 2162 3.412386 CGAAAGTCCCTGAAAAGGATGT 58.588 45.455 0.00 0.00 35.38 3.06
1928 2163 3.189287 CGAAAGTCCCTGAAAAGGATGTG 59.811 47.826 0.00 0.00 35.38 3.21
1992 2229 6.656693 CCCTGATACACAATTCTTCCATATCC 59.343 42.308 0.00 0.00 0.00 2.59
2019 2256 3.181461 GCTAACCAGGCTAGACACATCAT 60.181 47.826 0.00 0.00 0.00 2.45
2028 2265 3.064545 GCTAGACACATCATTCTTGCACC 59.935 47.826 0.00 0.00 39.50 5.01
2029 2266 3.144657 AGACACATCATTCTTGCACCA 57.855 42.857 0.00 0.00 0.00 4.17
2031 2268 3.076621 GACACATCATTCTTGCACCAGA 58.923 45.455 0.00 0.00 0.00 3.86
2038 2275 3.380004 TCATTCTTGCACCAGAAACGTTT 59.620 39.130 14.57 14.57 36.36 3.60
2041 2278 1.587946 CTTGCACCAGAAACGTTTTGC 59.412 47.619 22.43 22.43 0.00 3.68
2068 2305 5.173854 GTCATTTTTCTTCACTTTTCAGGCG 59.826 40.000 0.00 0.00 0.00 5.52
2098 2335 6.258507 GGCAACAACATTTCTCTGTTTTGATT 59.741 34.615 12.04 0.00 37.25 2.57
2140 2377 0.540923 AGGCAAGAGATGTGCTCCTC 59.459 55.000 0.00 0.00 45.10 3.71
2146 2383 1.554160 AGAGATGTGCTCCTCCTGTTG 59.446 52.381 0.00 0.00 45.10 3.33
2163 2400 9.123902 CCTCCTGTTGTTATTCATCAATTCATA 57.876 33.333 0.00 0.00 0.00 2.15
2194 2431 3.879892 GGACTCAAAGAAGTGCTGTCTTT 59.120 43.478 4.61 4.61 44.30 2.52
2262 2499 4.211125 TGACAACAAAAGCCTCATGGTTA 58.789 39.130 0.00 0.00 33.41 2.85
2263 2500 4.832266 TGACAACAAAAGCCTCATGGTTAT 59.168 37.500 0.00 0.00 33.41 1.89
2266 2503 5.304101 ACAACAAAAGCCTCATGGTTATTCA 59.696 36.000 0.00 0.00 33.41 2.57
2318 2555 2.353011 GGTTGCCACCACAATTCATCAG 60.353 50.000 1.17 0.00 43.61 2.90
2322 2559 2.094545 GCCACCACAATTCATCAGTTCC 60.095 50.000 0.00 0.00 0.00 3.62
2323 2560 2.493278 CCACCACAATTCATCAGTTCCC 59.507 50.000 0.00 0.00 0.00 3.97
2336 2573 3.031736 TCAGTTCCCTATGGTGCTCTAC 58.968 50.000 0.00 0.00 0.00 2.59
2346 2583 6.352516 CCTATGGTGCTCTACTTTTGAAGAT 58.647 40.000 0.00 0.00 0.00 2.40
2382 2619 1.369839 TTGTTCGCTGTTTGCCGTGA 61.370 50.000 0.00 0.00 38.78 4.35
2383 2620 1.082756 GTTCGCTGTTTGCCGTGAG 60.083 57.895 0.00 0.00 38.78 3.51
2391 2635 2.480419 CTGTTTGCCGTGAGTAGGAAAG 59.520 50.000 0.00 0.00 0.00 2.62
2392 2636 2.103432 TGTTTGCCGTGAGTAGGAAAGA 59.897 45.455 0.00 0.00 0.00 2.52
2427 2672 8.034215 CAGCTGGATGGTGAAAAACATATTTTA 58.966 33.333 5.57 0.00 46.27 1.52
2469 2714 4.623932 TGAGTTGAGTACCTGCTTTCAT 57.376 40.909 0.00 0.00 0.00 2.57
2477 2722 9.722056 GTTGAGTACCTGCTTTCATAAATAATG 57.278 33.333 0.00 0.00 36.88 1.90
2478 2723 8.450578 TGAGTACCTGCTTTCATAAATAATGG 57.549 34.615 0.00 0.00 36.15 3.16
2500 2745 1.948144 GCAGAGGCTGGAGACCTTTTC 60.948 57.143 0.00 0.00 37.77 2.29
2501 2746 0.988063 AGAGGCTGGAGACCTTTTCC 59.012 55.000 0.00 0.00 37.77 3.13
2504 2749 0.988063 GGCTGGAGACCTTTTCCTCT 59.012 55.000 0.00 0.00 35.67 3.69
2549 2794 2.167693 CAGAGGGCATTGCATCATTTGT 59.832 45.455 11.39 0.00 0.00 2.83
2554 2799 3.378339 GGCATTGCATCATTTGTCTAGC 58.622 45.455 11.39 0.00 0.00 3.42
2561 2806 4.514066 TGCATCATTTGTCTAGCATGCTAG 59.486 41.667 38.20 38.20 45.38 3.42
2563 2808 5.560375 GCATCATTTGTCTAGCATGCTAGTG 60.560 44.000 40.10 32.47 44.59 2.74
2565 2810 6.220726 TCATTTGTCTAGCATGCTAGTGTA 57.779 37.500 40.10 28.51 44.59 2.90
2616 2863 0.615827 AAATGAGCTTCTTGGCCCCC 60.616 55.000 0.00 0.00 0.00 5.40
2618 2865 4.803908 GAGCTTCTTGGCCCCCGG 62.804 72.222 0.00 0.00 0.00 5.73
2630 2877 3.015145 CCCCGGTCACCCTCCAAT 61.015 66.667 0.00 0.00 0.00 3.16
2635 2882 0.253044 CGGTCACCCTCCAATCACAT 59.747 55.000 0.00 0.00 0.00 3.21
2640 2887 0.257039 ACCCTCCAATCACATGCCTC 59.743 55.000 0.00 0.00 0.00 4.70
2699 2983 4.697352 AGCAGCTAACACTAAAATGACAGG 59.303 41.667 0.00 0.00 0.00 4.00
2704 2988 6.428159 AGCTAACACTAAAATGACAGGTTCAG 59.572 38.462 0.00 0.00 37.77 3.02
2705 2989 6.348540 GCTAACACTAAAATGACAGGTTCAGG 60.349 42.308 0.00 0.00 37.77 3.86
2730 3014 9.921637 GGAACCATCATTACAAATTACTCAAAA 57.078 29.630 0.00 0.00 0.00 2.44
2763 3047 3.133003 GCTACTGCCTTCATAAGACCTGA 59.867 47.826 0.00 0.00 0.00 3.86
2842 3126 4.704540 AGAAATCAACCACGAATTATGCCA 59.295 37.500 0.00 0.00 0.00 4.92
2855 3139 5.448496 CGAATTATGCCATCCTTCGTTTTCA 60.448 40.000 11.36 0.00 35.29 2.69
2857 3141 5.913137 TTATGCCATCCTTCGTTTTCAAT 57.087 34.783 0.00 0.00 0.00 2.57
2869 3153 3.816523 TCGTTTTCAATTACCCAGACCAC 59.183 43.478 0.00 0.00 0.00 4.16
2913 3197 3.091545 TGAAATGCAACTGAATCTCCCC 58.908 45.455 0.00 0.00 0.00 4.81
2981 3265 3.111853 TGTCTACTGTCTGCAAACCTG 57.888 47.619 0.00 0.00 0.00 4.00
2994 3278 7.611467 TGTCTGCAAACCTGATATATTGAAACT 59.389 33.333 0.00 0.00 0.00 2.66
3009 3294 6.581388 ATTGAAACTTCCCCTGATATCTCA 57.419 37.500 3.98 0.00 0.00 3.27
3013 3298 7.056635 TGAAACTTCCCCTGATATCTCAATTC 58.943 38.462 3.98 0.00 0.00 2.17
3045 3330 2.570415 TGGTTAACCAGGATTCGCAA 57.430 45.000 23.69 0.00 42.01 4.85
3046 3331 2.865079 TGGTTAACCAGGATTCGCAAA 58.135 42.857 23.69 0.00 42.01 3.68
3047 3332 3.223435 TGGTTAACCAGGATTCGCAAAA 58.777 40.909 23.69 0.00 42.01 2.44
3048 3333 3.637229 TGGTTAACCAGGATTCGCAAAAA 59.363 39.130 23.69 0.00 42.01 1.94
3080 3365 3.181488 TGGATTGGCACATTAATCTTGCG 60.181 43.478 10.93 0.00 39.30 4.85
3083 3368 0.592247 GGCACATTAATCTTGCGCCG 60.592 55.000 4.18 0.00 37.11 6.46
3131 3416 7.370383 TCTTCACTTTTCAGGCATATTGAAAC 58.630 34.615 1.38 0.00 42.44 2.78
3132 3417 6.647334 TCACTTTTCAGGCATATTGAAACA 57.353 33.333 1.38 0.00 42.44 2.83
3133 3418 6.446318 TCACTTTTCAGGCATATTGAAACAC 58.554 36.000 1.38 0.00 42.44 3.32
3134 3419 5.634859 CACTTTTCAGGCATATTGAAACACC 59.365 40.000 1.38 0.00 42.44 4.16
3153 3439 9.244799 GAAACACCGTTTCTCTGATTTTATTTT 57.755 29.630 11.42 0.00 0.00 1.82
3216 3502 7.676004 TCCTGTTATTACTCATCAAGTCACAA 58.324 34.615 0.00 0.00 39.55 3.33
3228 3514 7.147312 TCATCAAGTCACAATTCATTTGGAAC 58.853 34.615 0.00 0.00 39.80 3.62
3267 3553 4.288366 TCCTGACATCAGATTAACCAACCA 59.712 41.667 10.55 0.00 46.59 3.67
3269 3555 5.653769 CCTGACATCAGATTAACCAACCATT 59.346 40.000 10.55 0.00 46.59 3.16
3285 3571 4.882671 ACCATTGCGATAACATGAGAAC 57.117 40.909 0.00 0.00 0.00 3.01
3309 3595 5.163784 CGCATGATCTCAACAAAAGTCTCAT 60.164 40.000 0.00 0.00 0.00 2.90
3360 4352 1.812571 CATCACCTTGGTTGCCACTAC 59.187 52.381 0.00 0.00 30.78 2.73
3382 4374 8.103305 ACTACAATTCATCACTTCTGTATGGTT 58.897 33.333 0.00 0.00 0.00 3.67
3383 4375 7.765695 ACAATTCATCACTTCTGTATGGTTT 57.234 32.000 0.00 0.00 0.00 3.27
3431 4423 9.986833 AAATAAATTTGTTTTCTGTTTGCAGTC 57.013 25.926 7.06 0.00 43.05 3.51
3434 4426 3.129852 TGTTTTCTGTTTGCAGTCGTG 57.870 42.857 0.00 0.00 43.05 4.35
3445 4437 1.749063 TGCAGTCGTGTCATACTAGGG 59.251 52.381 0.00 0.00 0.00 3.53
3446 4438 2.022195 GCAGTCGTGTCATACTAGGGA 58.978 52.381 0.00 0.00 0.00 4.20
3472 4464 8.644374 AAAAATACTGTTTTAGCTGGATGGTA 57.356 30.769 0.00 0.00 0.00 3.25
3515 4507 7.736447 ATTTGGAAAGACTTACTGAGTTGAG 57.264 36.000 0.00 0.00 39.19 3.02
3553 4545 1.871418 TAATGCAGAGGCTGGAGACT 58.129 50.000 0.00 0.00 41.91 3.24
3560 4552 1.352687 AGAGGCTGGAGACTTTTTCCC 59.647 52.381 0.00 0.00 30.09 3.97
3565 4558 3.388024 GGCTGGAGACTTTTTCCCTTTTT 59.612 43.478 0.00 0.00 33.62 1.94
3572 4565 7.045416 GGAGACTTTTTCCCTTTTTAAGCAAA 58.955 34.615 0.00 0.00 0.00 3.68
3576 4569 8.378172 ACTTTTTCCCTTTTTAAGCAAATAGC 57.622 30.769 0.00 0.00 46.19 2.97
3631 4625 9.273016 TGTTAATATTGCTATAGTCCTGCTTTC 57.727 33.333 0.84 0.00 0.00 2.62
3661 4655 0.040204 ATGAGTTTCTTGGCCCCAGG 59.960 55.000 0.00 0.00 0.00 4.45
3663 4657 0.696501 GAGTTTCTTGGCCCCAGGTA 59.303 55.000 0.00 0.00 0.00 3.08
3701 4706 3.186613 CAGGACCGAGCTTACTCAAAAAC 59.813 47.826 0.00 0.00 43.66 2.43
3702 4707 3.071167 AGGACCGAGCTTACTCAAAAACT 59.929 43.478 0.00 0.00 43.66 2.66
3703 4708 3.186613 GGACCGAGCTTACTCAAAAACTG 59.813 47.826 0.00 0.00 43.66 3.16
3706 4712 3.364366 CCGAGCTTACTCAAAAACTGCTG 60.364 47.826 0.00 0.00 43.66 4.41
3774 4781 4.042187 AGTCCTTGCTCATTACAAAGACCT 59.958 41.667 0.00 0.00 38.62 3.85
3789 4796 1.085091 GACCTGCATCAGCTGAACAG 58.915 55.000 29.81 29.81 41.71 3.16
3796 4803 2.810274 GCATCAGCTGAACAGTGAGAAA 59.190 45.455 22.50 0.00 37.91 2.52
3799 4806 3.461061 TCAGCTGAACAGTGAGAAACAG 58.539 45.455 15.67 0.00 0.00 3.16
3816 4823 6.415573 AGAAACAGACCAAAGTAACTGAACT 58.584 36.000 0.00 0.00 34.88 3.01
3817 4824 6.316390 AGAAACAGACCAAAGTAACTGAACTG 59.684 38.462 0.00 0.00 34.88 3.16
3857 4864 1.133699 CCATTAGCCATTCTCCAGCCA 60.134 52.381 0.00 0.00 0.00 4.75
3869 4876 1.693062 CTCCAGCCAGAGCATCATAGT 59.307 52.381 0.00 0.00 43.56 2.12
3870 4877 1.690893 TCCAGCCAGAGCATCATAGTC 59.309 52.381 0.00 0.00 43.56 2.59
3887 4894 6.399013 TCATAGTCCCCCATCCTTATTAGTT 58.601 40.000 0.00 0.00 0.00 2.24
3888 4895 6.272324 TCATAGTCCCCCATCCTTATTAGTTG 59.728 42.308 0.00 0.00 0.00 3.16
3947 4954 2.418368 TACATCTGTGAACATGGCCC 57.582 50.000 0.00 0.00 0.00 5.80
3960 4967 2.203437 GGCCCCAAGTGGAAACGT 60.203 61.111 0.00 0.00 37.39 3.99
3965 4972 1.226746 CCCAAGTGGAAACGTGACTC 58.773 55.000 0.00 0.00 37.39 3.36
3982 4997 1.478510 ACTCGTGTAGCTTGGATCCAG 59.521 52.381 15.53 10.43 0.00 3.86
4045 5060 4.615949 AGCTATCTCATTACTTCTGTGCG 58.384 43.478 0.00 0.00 0.00 5.34
4047 5062 5.299531 AGCTATCTCATTACTTCTGTGCGTA 59.700 40.000 0.00 0.00 0.00 4.42
4059 5074 5.047943 ACTTCTGTGCGTATCTTACTTGTCT 60.048 40.000 0.00 0.00 0.00 3.41
4075 5090 9.893305 CTTACTTGTCTAAAATCCAAAATCGTT 57.107 29.630 0.00 0.00 0.00 3.85
4081 5096 7.483375 TGTCTAAAATCCAAAATCGTTATTGCG 59.517 33.333 0.00 0.00 0.00 4.85
4085 5100 1.917303 CCAAAATCGTTATTGCGTGGC 59.083 47.619 0.00 0.00 0.00 5.01
4115 5130 3.515630 ACAGATGCGACATAAGAGTGTG 58.484 45.455 0.00 0.00 31.16 3.82
4168 5183 7.989170 TCTTCACAATCATGAGTATGTAAGCAT 59.011 33.333 0.85 0.00 39.03 3.79
4338 5353 6.241207 ACGAACAAACCAGAACAATCTATG 57.759 37.500 0.00 0.00 33.50 2.23
4363 5378 1.068541 CGCACCAAAAGGAAGTAAGCC 60.069 52.381 0.00 0.00 0.00 4.35
4443 5458 6.183360 GCTGCAGTACTACAGTTTGTTCTATG 60.183 42.308 21.53 0.00 36.26 2.23
4497 5512 3.067461 GTGTCTGAGTGGAGTATAGCTGG 59.933 52.174 0.00 0.00 0.00 4.85
4511 5526 7.336161 AGTATAGCTGGAGTACTACAGTTTG 57.664 40.000 31.23 11.80 43.47 2.93
4753 5932 4.527038 GGGGAACATAGCTGCACTATACTA 59.473 45.833 1.02 0.00 39.71 1.82
4830 6009 7.117236 AGCATGTTTTCTAAAGTTGCAATGATG 59.883 33.333 0.59 0.00 0.00 3.07
5013 6193 4.169059 TGGTAATATGTGGCTCTGCATT 57.831 40.909 0.00 0.00 0.00 3.56
5023 6203 3.311871 GTGGCTCTGCATTGTGAATAGAG 59.688 47.826 0.00 0.00 38.28 2.43
5056 6236 1.826385 ATGCTGGCACCTACAGTTTC 58.174 50.000 0.00 0.00 38.22 2.78
5065 6245 4.127171 GCACCTACAGTTTCTTTCTGTGA 58.873 43.478 8.54 0.00 44.41 3.58
5099 6279 8.375506 TGTTCCTTATTTCAGTACTCTCATGTT 58.624 33.333 0.00 0.00 0.00 2.71
5135 6316 5.831997 TGTATATCATCACTTCGTCAGGTG 58.168 41.667 0.00 0.00 35.06 4.00
5156 6337 3.056536 TGAACTCTCTGTCCTTCAATCCG 60.057 47.826 0.00 0.00 0.00 4.18
5222 6403 8.391106 ACTATTAAGCTATTTGACTTGCGAAAG 58.609 33.333 0.10 0.10 0.00 2.62
5296 6477 7.499321 TTTTTGTCTTCTTACCTATTTGCGA 57.501 32.000 0.00 0.00 0.00 5.10
5308 6489 3.614616 CCTATTTGCGACAGTCAGTTCTC 59.385 47.826 0.41 0.00 0.00 2.87
5309 6490 2.890808 TTTGCGACAGTCAGTTCTCT 57.109 45.000 0.41 0.00 0.00 3.10
5311 6492 2.890808 TGCGACAGTCAGTTCTCTTT 57.109 45.000 0.41 0.00 0.00 2.52
5313 6494 2.866156 TGCGACAGTCAGTTCTCTTTTG 59.134 45.455 0.41 0.00 0.00 2.44
5328 6512 9.057089 AGTTCTCTTTTGTTTTATCGAGACAAT 57.943 29.630 7.10 0.00 33.73 2.71
5338 6526 8.282592 TGTTTTATCGAGACAATTCTCTGTTTG 58.717 33.333 0.00 0.00 45.61 2.93
5382 6578 2.833794 TCTTCAGTTTTGCTGCTACGT 58.166 42.857 0.00 0.00 44.66 3.57
5406 6602 0.498095 GATGTTGTTGTGTTTGCGCG 59.502 50.000 0.00 0.00 0.00 6.86
5455 6651 3.490348 CAGGTTGAGTGGAATCCAAACT 58.510 45.455 2.31 0.00 38.26 2.66
5472 6668 5.803020 CAAACTTGGAGACTGTATTAGCC 57.197 43.478 0.00 0.00 0.00 3.93
5522 6718 0.248289 TGGGACGTTAGCAGGTAAGC 59.752 55.000 0.00 0.00 0.00 3.09
5525 6721 2.167075 GGGACGTTAGCAGGTAAGCTTA 59.833 50.000 0.86 0.86 43.70 3.09
5546 6742 6.072783 GCTTAAGTCAAATCTGCTCCCATATC 60.073 42.308 4.02 0.00 0.00 1.63
5549 6745 4.070716 GTCAAATCTGCTCCCATATCCTG 58.929 47.826 0.00 0.00 0.00 3.86
5551 6747 3.784511 AATCTGCTCCCATATCCTGTG 57.215 47.619 0.00 0.00 0.00 3.66
5566 6762 2.553602 TCCTGTGTTACATTTGCAGCTG 59.446 45.455 10.11 10.11 0.00 4.24
5598 6795 1.522668 TGTTGCTGGCACACTCATAC 58.477 50.000 0.00 0.00 0.00 2.39
5651 6848 2.678324 GCGATGGCTTCTAGTATGACC 58.322 52.381 0.00 0.00 35.83 4.02
5653 6850 3.243907 GCGATGGCTTCTAGTATGACCTT 60.244 47.826 0.00 0.00 35.83 3.50
5655 6852 5.336849 GCGATGGCTTCTAGTATGACCTTAT 60.337 44.000 0.00 0.00 35.83 1.73
5656 6853 6.127703 GCGATGGCTTCTAGTATGACCTTATA 60.128 42.308 0.00 0.00 35.83 0.98
5657 6854 7.577046 GCGATGGCTTCTAGTATGACCTTATAA 60.577 40.741 0.00 0.00 35.83 0.98
5658 6855 7.971168 CGATGGCTTCTAGTATGACCTTATAAG 59.029 40.741 5.43 5.43 0.00 1.73
5659 6856 6.994221 TGGCTTCTAGTATGACCTTATAAGC 58.006 40.000 6.99 0.00 36.86 3.09
5660 6857 6.094061 GGCTTCTAGTATGACCTTATAAGCG 58.906 44.000 6.99 3.49 38.11 4.68
5662 6859 7.363094 GGCTTCTAGTATGACCTTATAAGCGAT 60.363 40.741 6.99 1.41 38.11 4.58
5663 6860 7.486551 GCTTCTAGTATGACCTTATAAGCGATG 59.513 40.741 6.99 0.00 0.00 3.84
5664 6861 7.392494 TCTAGTATGACCTTATAAGCGATGG 57.608 40.000 6.99 0.00 0.00 3.51
5665 6862 4.822026 AGTATGACCTTATAAGCGATGGC 58.178 43.478 6.99 0.00 40.37 4.40
5678 6875 2.678324 GCGATGGCTTCTAGTATGACC 58.322 52.381 0.00 0.00 35.83 4.02
5679 6876 2.297597 GCGATGGCTTCTAGTATGACCT 59.702 50.000 0.00 0.00 35.83 3.85
5680 6877 3.243907 GCGATGGCTTCTAGTATGACCTT 60.244 47.826 0.00 0.00 35.83 3.50
5681 6878 4.022242 GCGATGGCTTCTAGTATGACCTTA 60.022 45.833 0.00 0.00 35.83 2.69
5682 6879 5.336849 GCGATGGCTTCTAGTATGACCTTAT 60.337 44.000 0.00 0.00 35.83 1.73
5683 6880 6.127703 GCGATGGCTTCTAGTATGACCTTATA 60.128 42.308 0.00 0.00 35.83 0.98
5684 6881 7.577046 GCGATGGCTTCTAGTATGACCTTATAA 60.577 40.741 0.00 0.00 35.83 0.98
5685 6882 7.971168 CGATGGCTTCTAGTATGACCTTATAAG 59.029 40.741 5.43 5.43 0.00 1.73
5686 6883 6.994221 TGGCTTCTAGTATGACCTTATAAGC 58.006 40.000 6.99 0.00 36.86 3.09
5687 6884 6.094061 GGCTTCTAGTATGACCTTATAAGCG 58.906 44.000 6.99 3.49 38.11 4.68
5688 6885 6.072064 GGCTTCTAGTATGACCTTATAAGCGA 60.072 42.308 6.99 0.00 38.11 4.93
5689 6886 7.363094 GGCTTCTAGTATGACCTTATAAGCGAT 60.363 40.741 6.99 1.41 38.11 4.58
5690 6887 7.486551 GCTTCTAGTATGACCTTATAAGCGATG 59.513 40.741 6.99 0.00 0.00 3.84
5691 6888 7.392494 TCTAGTATGACCTTATAAGCGATGG 57.608 40.000 6.99 0.00 0.00 3.51
5692 6889 4.822026 AGTATGACCTTATAAGCGATGGC 58.178 43.478 6.99 0.00 40.37 4.40
5713 6910 8.728596 ATGGCTTCTAGTATGACCTTATAAGT 57.271 34.615 11.50 0.00 0.00 2.24
5770 6969 1.290203 CACATGCATCTACGGTCACC 58.710 55.000 0.00 0.00 0.00 4.02
5842 7041 5.798132 AGCTTTGTGACTTGACAGATATGA 58.202 37.500 0.00 0.00 0.00 2.15
5844 7043 6.315642 AGCTTTGTGACTTGACAGATATGATG 59.684 38.462 0.00 0.00 0.00 3.07
5845 7044 6.426980 TTTGTGACTTGACAGATATGATGC 57.573 37.500 0.00 0.00 0.00 3.91
5856 7055 4.202398 ACAGATATGATGCCATCTTCCGTT 60.202 41.667 6.21 0.00 34.31 4.44
5867 7066 2.823924 TCTTCCGTTCGATTTGTGGA 57.176 45.000 0.00 0.00 0.00 4.02
5888 7087 6.474427 GTGGATGAATTTTGTCATATGCTGTG 59.526 38.462 0.00 0.00 38.38 3.66
5889 7088 6.153170 TGGATGAATTTTGTCATATGCTGTGT 59.847 34.615 0.00 0.00 38.38 3.72
5890 7089 6.474427 GGATGAATTTTGTCATATGCTGTGTG 59.526 38.462 0.00 0.00 38.38 3.82
5891 7090 6.330004 TGAATTTTGTCATATGCTGTGTGT 57.670 33.333 0.00 0.00 0.00 3.72
5892 7091 6.151004 TGAATTTTGTCATATGCTGTGTGTG 58.849 36.000 0.00 0.00 0.00 3.82
5893 7092 5.710513 ATTTTGTCATATGCTGTGTGTGT 57.289 34.783 0.00 0.00 0.00 3.72
5894 7093 4.486574 TTTGTCATATGCTGTGTGTGTG 57.513 40.909 0.00 0.00 0.00 3.82
6097 7296 2.460918 AGCATATACAGCGACGACAAC 58.539 47.619 0.00 0.00 37.01 3.32
6098 7297 1.187271 GCATATACAGCGACGACAACG 59.813 52.381 0.00 0.00 45.75 4.10
6099 7298 1.779157 CATATACAGCGACGACAACGG 59.221 52.381 0.00 0.00 44.46 4.44
6113 7315 3.468266 AACGGCAGCAACAGCAACG 62.468 57.895 0.00 0.00 0.00 4.10
6120 7359 2.027460 CAACAGCAACGCCCAACC 59.973 61.111 0.00 0.00 0.00 3.77
6302 7548 5.278266 GGATCGAGTATCTTGGAGAAGTGAG 60.278 48.000 0.00 0.00 34.75 3.51
6312 7558 2.035961 TGGAGAAGTGAGTCTGGAAACG 59.964 50.000 0.00 0.00 0.00 3.60
6319 7565 2.676342 GTGAGTCTGGAAACGTTTGTGT 59.324 45.455 20.10 0.00 0.00 3.72
6400 7674 0.752658 AAGTTTTCAGGCCTTGGTGC 59.247 50.000 0.00 0.00 0.00 5.01
6401 7675 0.106015 AGTTTTCAGGCCTTGGTGCT 60.106 50.000 0.00 0.00 0.00 4.40
6402 7676 0.032540 GTTTTCAGGCCTTGGTGCTG 59.967 55.000 0.00 0.00 0.00 4.41
6403 7677 0.106268 TTTTCAGGCCTTGGTGCTGA 60.106 50.000 0.00 0.00 0.00 4.26
6404 7678 0.106268 TTTCAGGCCTTGGTGCTGAA 60.106 50.000 0.00 0.00 32.99 3.02
6414 7688 3.551454 CCTTGGTGCTGAACTGAATTGTG 60.551 47.826 0.00 0.00 0.00 3.33
6446 7720 4.595538 TGGTCGCACGGTCCACAC 62.596 66.667 4.36 0.00 0.00 3.82
6475 7758 2.293170 GGGCCTCTACTGAAAATCTGC 58.707 52.381 0.84 0.00 0.00 4.26
6476 7759 2.092699 GGGCCTCTACTGAAAATCTGCT 60.093 50.000 0.84 0.00 0.00 4.24
6502 7785 2.480555 GCAACGCCTTGTCATCCG 59.519 61.111 0.00 0.00 0.00 4.18
6524 7807 1.653094 TTCCACGGCGCAATCATTCC 61.653 55.000 10.83 0.00 0.00 3.01
6537 7820 3.801997 ATTCCCTCGCTGCCTGGG 61.802 66.667 15.88 15.88 42.20 4.45
6574 7860 3.934391 GACGTGGGGGAGCGACTTG 62.934 68.421 0.00 0.00 0.00 3.16
6662 7954 1.746239 CACGCCATGTCATGCCTGA 60.746 57.895 7.35 0.00 0.00 3.86
6776 8076 0.732880 CGGCATCGACGTCTTTGAGT 60.733 55.000 14.70 0.00 39.00 3.41
6800 8100 4.463879 CTCGTCTGGGCAGCCCTG 62.464 72.222 31.51 29.65 45.70 4.45
6834 8138 1.602323 CACTTTGCAGCCCCGGTTA 60.602 57.895 0.00 0.00 0.00 2.85
6855 8182 2.055838 GTCAACAACAGATGCGTACGA 58.944 47.619 21.65 4.52 0.00 3.43
6863 8190 2.426024 ACAGATGCGTACGACCTTGTAT 59.574 45.455 21.65 0.63 0.00 2.29
6864 8191 3.119245 ACAGATGCGTACGACCTTGTATT 60.119 43.478 21.65 0.00 0.00 1.89
6886 8213 2.037620 GAGAGATGCCCTCGCCATGT 62.038 60.000 0.00 0.00 46.49 3.21
6909 8236 5.406780 GTCAAGTGATAGACCTTTCACACTG 59.593 44.000 18.17 14.92 41.78 3.66
6916 8243 3.501349 AGACCTTTCACACTGCTCTCTA 58.499 45.455 0.00 0.00 0.00 2.43
6928 8255 7.661437 TCACACTGCTCTCTATAAAATGTTGTT 59.339 33.333 0.00 0.00 0.00 2.83
6929 8256 8.935844 CACACTGCTCTCTATAAAATGTTGTTA 58.064 33.333 0.00 0.00 0.00 2.41
6930 8257 9.502091 ACACTGCTCTCTATAAAATGTTGTTAA 57.498 29.630 0.00 0.00 0.00 2.01
6933 8260 9.941664 CTGCTCTCTATAAAATGTTGTTAATGG 57.058 33.333 0.00 0.00 0.00 3.16
6934 8261 9.679661 TGCTCTCTATAAAATGTTGTTAATGGA 57.320 29.630 0.00 0.00 0.00 3.41
6982 8309 4.555348 AAAACAGATGCGTAAAACCGAA 57.445 36.364 0.00 0.00 0.00 4.30
6999 8326 6.738832 AACCGAAGAAAAATTACTAGGCTC 57.261 37.500 0.00 0.00 0.00 4.70
7013 8340 0.977395 AGGCTCTGTAACTTTCGGCT 59.023 50.000 0.00 0.00 0.00 5.52
7029 8356 0.391793 GGCTCCTTCCTTCGTTCCTG 60.392 60.000 0.00 0.00 0.00 3.86
7048 8375 0.802494 GCCGTATCTTGTGGTTGGTG 59.198 55.000 0.00 0.00 0.00 4.17
7074 8401 3.454573 CTACAGTACGCCGGGGCA 61.455 66.667 19.97 1.75 42.06 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 230 4.742201 GTCGCCGAGCTGCAGGAA 62.742 66.667 17.12 2.74 0.00 3.36
670 671 3.589881 GCCGCCATGATGCAGTCC 61.590 66.667 0.00 0.00 0.00 3.85
722 729 1.669115 CCACAACCACGAGCCTCTG 60.669 63.158 0.00 0.00 0.00 3.35
723 730 1.837051 TCCACAACCACGAGCCTCT 60.837 57.895 0.00 0.00 0.00 3.69
725 732 0.830444 TAGTCCACAACCACGAGCCT 60.830 55.000 0.00 0.00 0.00 4.58
726 733 0.389948 CTAGTCCACAACCACGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
727 734 1.014564 GCTAGTCCACAACCACGAGC 61.015 60.000 0.00 0.00 34.68 5.03
728 735 0.389948 GGCTAGTCCACAACCACGAG 60.390 60.000 0.00 0.00 34.01 4.18
729 736 1.669440 GGCTAGTCCACAACCACGA 59.331 57.895 0.00 0.00 34.01 4.35
730 737 1.736645 CGGCTAGTCCACAACCACG 60.737 63.158 4.43 0.00 34.01 4.94
731 738 1.375523 CCGGCTAGTCCACAACCAC 60.376 63.158 0.00 0.00 34.01 4.16
732 739 2.589157 CCCGGCTAGTCCACAACCA 61.589 63.158 0.00 0.00 34.01 3.67
733 740 2.267961 CCCGGCTAGTCCACAACC 59.732 66.667 0.00 0.00 34.01 3.77
734 741 1.610554 TAGCCCGGCTAGTCCACAAC 61.611 60.000 15.59 0.00 40.44 3.32
735 742 0.689745 ATAGCCCGGCTAGTCCACAA 60.690 55.000 23.37 0.79 44.66 3.33
736 743 0.689745 AATAGCCCGGCTAGTCCACA 60.690 55.000 23.37 1.57 44.66 4.17
758 765 3.261897 CCCACTAAGAGAACCTCATGTGT 59.738 47.826 0.00 0.00 32.06 3.72
769 776 1.692762 GCCCAGGATCCCACTAAGAGA 60.693 57.143 8.55 0.00 0.00 3.10
811 818 6.039616 CCCAGATCTCTCTAAAAGAAAGTCG 58.960 44.000 0.00 0.00 32.23 4.18
875 883 0.465460 TATTGCGGACTTGATGGGCC 60.465 55.000 0.00 0.00 0.00 5.80
883 891 1.467342 GCGAGGTTTTATTGCGGACTT 59.533 47.619 0.00 0.00 0.00 3.01
885 893 0.098200 GGCGAGGTTTTATTGCGGAC 59.902 55.000 0.00 0.00 0.00 4.79
1095 1110 4.531351 TGGGACACGATGAGGTCA 57.469 55.556 0.00 0.00 35.74 4.02
1693 1708 8.607441 TGAGAACCTAACATGCATAATACATC 57.393 34.615 0.00 0.00 0.00 3.06
1694 1709 8.840321 GTTGAGAACCTAACATGCATAATACAT 58.160 33.333 0.00 0.00 0.00 2.29
1733 1916 9.774742 CTTATGAAGGCAGAAGTGTTAATTAAC 57.225 33.333 19.44 19.44 38.28 2.01
1734 1917 9.733556 TCTTATGAAGGCAGAAGTGTTAATTAA 57.266 29.630 0.00 0.00 42.47 1.40
1735 1918 9.733556 TTCTTATGAAGGCAGAAGTGTTAATTA 57.266 29.630 0.00 0.00 42.47 1.40
1736 1919 8.635765 TTCTTATGAAGGCAGAAGTGTTAATT 57.364 30.769 0.00 0.00 42.47 1.40
1788 2020 6.183360 TGGTTTCTTGGCATTGTTATGACTTT 60.183 34.615 0.00 0.00 40.69 2.66
1789 2021 5.304101 TGGTTTCTTGGCATTGTTATGACTT 59.696 36.000 0.00 0.00 40.69 3.01
1813 2045 4.082787 CGAAGGACAGCATAATTTGTGGTT 60.083 41.667 0.00 0.00 0.00 3.67
1827 2059 5.880054 ATGTAATGGAAAACGAAGGACAG 57.120 39.130 0.00 0.00 0.00 3.51
1848 2080 3.027412 ACCTCGACTGAATGTGCTCTAT 58.973 45.455 0.00 0.00 0.00 1.98
1849 2081 2.423892 GACCTCGACTGAATGTGCTCTA 59.576 50.000 0.00 0.00 0.00 2.43
1915 2150 4.022589 ACTGAATGTGCACATCCTTTTCAG 60.023 41.667 36.01 36.01 40.78 3.02
1916 2151 3.890756 ACTGAATGTGCACATCCTTTTCA 59.109 39.130 31.45 27.13 35.10 2.69
1917 2152 4.232221 CACTGAATGTGCACATCCTTTTC 58.768 43.478 31.45 24.33 40.06 2.29
1947 2182 4.043435 AGGGGAAGTTCCAATATATCAGGC 59.957 45.833 23.33 1.30 38.64 4.85
2012 2249 4.232221 GTTTCTGGTGCAAGAATGATGTG 58.768 43.478 1.75 0.00 36.12 3.21
2019 2256 3.506810 CAAAACGTTTCTGGTGCAAGAA 58.493 40.909 15.01 0.00 34.36 2.52
2028 2265 5.640218 AAATGACATGCAAAACGTTTCTG 57.360 34.783 15.01 14.86 0.00 3.02
2029 2266 6.534793 AGAAAAATGACATGCAAAACGTTTCT 59.465 30.769 15.01 1.95 0.00 2.52
2031 2268 6.660887 AGAAAAATGACATGCAAAACGTTT 57.339 29.167 7.96 7.96 0.00 3.60
2038 2275 7.548427 TGAAAAGTGAAGAAAAATGACATGCAA 59.452 29.630 0.00 0.00 0.00 4.08
2041 2278 7.306983 GCCTGAAAAGTGAAGAAAAATGACATG 60.307 37.037 0.00 0.00 0.00 3.21
2068 2305 5.772521 ACAGAGAAATGTTGTTGCCAATAC 58.227 37.500 0.00 0.00 32.11 1.89
2098 2335 7.598493 GCCTGACACAAAATTGCTATTTAGAAA 59.402 33.333 6.55 0.00 32.85 2.52
2112 2349 3.316029 CACATCTCTTGCCTGACACAAAA 59.684 43.478 0.00 0.00 0.00 2.44
2120 2357 0.252479 AGGAGCACATCTCTTGCCTG 59.748 55.000 0.00 0.00 41.18 4.85
2121 2358 0.540923 GAGGAGCACATCTCTTGCCT 59.459 55.000 0.00 0.00 41.18 4.75
2163 2400 6.041296 AGCACTTCTTTGAGTCCAAATGAATT 59.959 34.615 0.00 0.00 41.03 2.17
2219 2456 7.104939 TGTCATCATGTGTTCTCATGTTATCA 58.895 34.615 12.43 7.53 43.70 2.15
2238 2475 3.256631 ACCATGAGGCTTTTGTTGTCATC 59.743 43.478 0.00 0.00 39.06 2.92
2241 2478 3.733443 AACCATGAGGCTTTTGTTGTC 57.267 42.857 0.00 0.00 39.06 3.18
2246 2483 6.698766 GCTTATGAATAACCATGAGGCTTTTG 59.301 38.462 0.00 0.00 39.06 2.44
2287 2524 1.535204 GGTGGCAACCAAGGTGATGG 61.535 60.000 5.00 0.00 46.75 3.51
2289 2526 4.519610 GGTGGCAACCAAGGTGAT 57.480 55.556 5.00 0.00 46.75 3.06
2318 2555 4.489306 AAAGTAGAGCACCATAGGGAAC 57.511 45.455 0.00 0.00 38.05 3.62
2322 2559 5.734720 TCTTCAAAAGTAGAGCACCATAGG 58.265 41.667 0.00 0.00 0.00 2.57
2323 2560 7.201679 CCAATCTTCAAAAGTAGAGCACCATAG 60.202 40.741 0.00 0.00 0.00 2.23
2346 2583 5.974751 GCGAACAAGTTTATTTCAAGTCCAA 59.025 36.000 0.00 0.00 0.00 3.53
2382 2619 6.825721 CCAGCTGAAACATTATCTTTCCTACT 59.174 38.462 17.39 0.00 0.00 2.57
2383 2620 6.823689 TCCAGCTGAAACATTATCTTTCCTAC 59.176 38.462 17.39 0.00 0.00 3.18
2391 2635 4.883585 TCACCATCCAGCTGAAACATTATC 59.116 41.667 17.39 0.00 0.00 1.75
2392 2636 4.858850 TCACCATCCAGCTGAAACATTAT 58.141 39.130 17.39 0.00 0.00 1.28
2427 2672 8.353423 ACTCAACAAGTCTTGCCAAATAATAT 57.647 30.769 12.66 0.00 30.02 1.28
2438 2683 5.235186 CAGGTACTCAACTCAACAAGTCTTG 59.765 44.000 11.17 11.17 33.71 3.02
2447 2692 4.415881 TGAAAGCAGGTACTCAACTCAA 57.584 40.909 0.00 0.00 34.60 3.02
2469 2714 3.201930 TCCAGCCTCTGCACCATTATTTA 59.798 43.478 0.00 0.00 41.13 1.40
2477 2722 2.267324 GTCTCCAGCCTCTGCACC 59.733 66.667 0.00 0.00 41.13 5.01
2478 2723 1.835927 AAGGTCTCCAGCCTCTGCAC 61.836 60.000 0.00 0.00 41.13 4.57
2523 2768 1.035932 ATGCAATGCCCTCTGCTCAC 61.036 55.000 1.53 0.00 42.00 3.51
2530 2775 2.429610 AGACAAATGATGCAATGCCCTC 59.570 45.455 1.53 0.00 0.00 4.30
2531 2776 2.463752 AGACAAATGATGCAATGCCCT 58.536 42.857 1.53 0.00 0.00 5.19
2532 2777 2.973694 AGACAAATGATGCAATGCCC 57.026 45.000 1.53 0.00 0.00 5.36
2533 2778 3.181484 TGCTAGACAAATGATGCAATGCC 60.181 43.478 1.53 0.00 0.00 4.40
2534 2779 4.036567 TGCTAGACAAATGATGCAATGC 57.963 40.909 0.00 0.00 0.00 3.56
2535 2780 4.444388 GCATGCTAGACAAATGATGCAATG 59.556 41.667 11.37 0.00 36.91 2.82
2536 2781 4.341235 AGCATGCTAGACAAATGATGCAAT 59.659 37.500 21.21 0.00 38.92 3.56
2541 2786 5.678583 ACACTAGCATGCTAGACAAATGAT 58.321 37.500 45.76 26.70 46.56 2.45
2561 2806 8.535690 AAAAAGAACTATGACTGTAGCTACAC 57.464 34.615 22.67 14.32 31.93 2.90
2588 2833 6.312180 GGCCAAGAAGCTCATTTTATTTGAAG 59.688 38.462 0.00 0.00 0.00 3.02
2596 2843 1.269958 GGGGCCAAGAAGCTCATTTT 58.730 50.000 4.39 0.00 33.67 1.82
2618 2865 1.098050 GCATGTGATTGGAGGGTGAC 58.902 55.000 0.00 0.00 0.00 3.67
2630 2877 3.106827 TCCTGAACTATGAGGCATGTGA 58.893 45.455 0.00 0.00 0.00 3.58
2635 2882 2.254152 AGGTCCTGAACTATGAGGCA 57.746 50.000 0.00 0.00 0.00 4.75
2640 2887 5.594725 TGAGTAAGCTAGGTCCTGAACTATG 59.405 44.000 0.00 0.00 28.94 2.23
2699 2983 8.739972 AGTAATTTGTAATGATGGTTCCTGAAC 58.260 33.333 1.33 1.33 40.45 3.18
2704 2988 9.921637 TTTTGAGTAATTTGTAATGATGGTTCC 57.078 29.630 0.00 0.00 0.00 3.62
2741 3025 3.133003 TCAGGTCTTATGAAGGCAGTAGC 59.867 47.826 0.00 0.00 33.90 3.58
2744 3028 2.503356 CCTCAGGTCTTATGAAGGCAGT 59.497 50.000 0.00 0.00 33.90 4.40
2763 3047 1.382146 TTCGGCCTTCGGGTATCCT 60.382 57.895 0.00 0.00 39.77 3.24
2776 3060 2.010145 TATGAGTTGAGTGCTTCGGC 57.990 50.000 0.00 0.00 42.19 5.54
2777 3061 3.589988 AGTTATGAGTTGAGTGCTTCGG 58.410 45.455 0.00 0.00 0.00 4.30
2778 3062 4.237724 TGAGTTATGAGTTGAGTGCTTCG 58.762 43.478 0.00 0.00 0.00 3.79
2779 3063 7.547370 ACTTATGAGTTATGAGTTGAGTGCTTC 59.453 37.037 0.00 0.00 32.14 3.86
2780 3064 7.390027 ACTTATGAGTTATGAGTTGAGTGCTT 58.610 34.615 0.00 0.00 32.14 3.91
2781 3065 6.940739 ACTTATGAGTTATGAGTTGAGTGCT 58.059 36.000 0.00 0.00 32.14 4.40
2782 3066 7.602517 AACTTATGAGTTATGAGTTGAGTGC 57.397 36.000 0.14 0.00 44.13 4.40
2806 3090 7.319646 GTGGTTGATTTCTTGGCATTGTTATA 58.680 34.615 0.00 0.00 0.00 0.98
2842 3126 5.414765 GTCTGGGTAATTGAAAACGAAGGAT 59.585 40.000 0.00 0.00 0.00 3.24
2913 3197 5.006649 TCGACTAAATTTGCTCATCCATTCG 59.993 40.000 0.00 0.00 0.00 3.34
2994 3278 5.671735 TGGAAGAATTGAGATATCAGGGGAA 59.328 40.000 5.32 0.00 0.00 3.97
3026 3311 2.570415 TTGCGAATCCTGGTTAACCA 57.430 45.000 25.58 25.58 45.30 3.67
3051 3336 5.559148 TTAATGTGCCAATCCAGGTTTTT 57.441 34.783 0.00 0.00 0.00 1.94
3052 3337 5.484998 AGATTAATGTGCCAATCCAGGTTTT 59.515 36.000 0.00 0.00 32.61 2.43
3053 3338 5.025453 AGATTAATGTGCCAATCCAGGTTT 58.975 37.500 0.00 0.00 32.61 3.27
3054 3339 4.613437 AGATTAATGTGCCAATCCAGGTT 58.387 39.130 0.00 0.00 32.61 3.50
3055 3340 4.255510 AGATTAATGTGCCAATCCAGGT 57.744 40.909 0.00 0.00 32.61 4.00
3056 3341 4.738541 GCAAGATTAATGTGCCAATCCAGG 60.739 45.833 8.83 0.00 32.61 4.45
3057 3342 4.365723 GCAAGATTAATGTGCCAATCCAG 58.634 43.478 8.83 0.00 32.61 3.86
3058 3343 3.181488 CGCAAGATTAATGTGCCAATCCA 60.181 43.478 12.79 0.00 43.02 3.41
3059 3344 3.374745 CGCAAGATTAATGTGCCAATCC 58.625 45.455 12.79 0.00 43.02 3.01
3060 3345 2.791004 GCGCAAGATTAATGTGCCAATC 59.209 45.455 0.30 0.00 45.99 2.67
3061 3346 2.813061 GCGCAAGATTAATGTGCCAAT 58.187 42.857 0.30 0.00 45.99 3.16
3062 3347 2.276472 GCGCAAGATTAATGTGCCAA 57.724 45.000 0.30 0.00 45.99 4.52
3080 3365 1.333115 GCATACAAAACGTTTCCGGC 58.667 50.000 15.01 10.20 38.78 6.13
3083 3368 5.915812 AAAATGGCATACAAAACGTTTCC 57.084 34.783 15.01 10.44 0.00 3.13
3093 3378 7.495901 TGAAAAGTGAAGAAAAATGGCATACA 58.504 30.769 0.00 0.00 0.00 2.29
3094 3379 7.116805 CCTGAAAAGTGAAGAAAAATGGCATAC 59.883 37.037 0.00 0.00 0.00 2.39
3099 3384 5.358922 TGCCTGAAAAGTGAAGAAAAATGG 58.641 37.500 0.00 0.00 0.00 3.16
3153 3439 5.164954 GCCCGACACAAATTGCTATTTTTA 58.835 37.500 3.23 0.00 31.63 1.52
3154 3440 3.993736 GCCCGACACAAATTGCTATTTTT 59.006 39.130 3.23 0.00 31.63 1.94
3216 3502 5.857268 CCACTTCTTTGGTTCCAAATGAAT 58.143 37.500 15.94 9.66 35.70 2.57
3228 3514 2.634940 TCAGGAGAGACCACTTCTTTGG 59.365 50.000 0.00 0.00 43.04 3.28
3267 3553 3.592381 GCGTTCTCATGTTATCGCAAT 57.408 42.857 17.34 0.00 42.54 3.56
3285 3571 4.152938 TGAGACTTTTGTTGAGATCATGCG 59.847 41.667 0.00 0.00 0.00 4.73
3345 3631 2.890311 TGAATTGTAGTGGCAACCAAGG 59.110 45.455 0.00 0.00 34.18 3.61
3496 4488 7.148722 GCATGTACTCAACTCAGTAAGTCTTTC 60.149 40.741 0.00 0.00 37.17 2.62
3539 4531 2.431454 GGAAAAAGTCTCCAGCCTCTG 58.569 52.381 0.00 0.00 32.77 3.35
3540 4532 1.352687 GGGAAAAAGTCTCCAGCCTCT 59.647 52.381 0.00 0.00 34.34 3.69
3572 4565 4.694760 TGATGCAATACTCACCAGCTAT 57.305 40.909 0.00 0.00 0.00 2.97
3603 4596 9.799106 AAGCAGGACTATAGCAATATTAACATT 57.201 29.630 0.00 0.00 0.00 2.71
3611 4604 7.124573 TGAAGAAAGCAGGACTATAGCAATA 57.875 36.000 0.00 0.00 0.00 1.90
3631 4625 7.118245 GGGCCAAGAAACTCATTTTATTTGAAG 59.882 37.037 4.39 0.00 29.37 3.02
3653 4647 2.362503 GGCTTGTTACCTGGGGCC 60.363 66.667 0.00 0.00 0.00 5.80
3654 4648 0.330267 TAAGGCTTGTTACCTGGGGC 59.670 55.000 10.69 0.00 37.67 5.80
3661 4655 4.451435 GTCCTGAACTGTAAGGCTTGTTAC 59.549 45.833 10.69 0.24 39.30 2.50
3663 4657 3.477530 GTCCTGAACTGTAAGGCTTGTT 58.522 45.455 10.69 5.52 39.30 2.83
3706 4712 3.059188 TGTCGTTTAGTTTAAGCTGCTGC 60.059 43.478 1.35 7.62 40.05 5.25
3754 4761 3.119708 GCAGGTCTTTGTAATGAGCAAGG 60.120 47.826 10.85 0.00 34.26 3.61
3774 4781 1.345415 TCTCACTGTTCAGCTGATGCA 59.655 47.619 19.04 17.84 42.74 3.96
3789 4796 5.815740 TCAGTTACTTTGGTCTGTTTCTCAC 59.184 40.000 0.00 0.00 0.00 3.51
3796 4803 3.877508 GCAGTTCAGTTACTTTGGTCTGT 59.122 43.478 0.00 0.00 0.00 3.41
3799 4806 3.304057 GCTGCAGTTCAGTTACTTTGGTC 60.304 47.826 16.64 0.00 44.66 4.02
3841 4848 1.126488 CTCTGGCTGGAGAATGGCTA 58.874 55.000 2.71 0.00 35.52 3.93
3857 4864 2.264455 GATGGGGGACTATGATGCTCT 58.736 52.381 0.00 0.00 0.00 4.09
3869 4876 8.766492 ATAATACAACTAATAAGGATGGGGGA 57.234 34.615 0.00 0.00 0.00 4.81
3870 4877 9.822727 AAATAATACAACTAATAAGGATGGGGG 57.177 33.333 0.00 0.00 0.00 5.40
3905 4912 9.743057 TGTATGTTTTTACAGGACAAAAGAATG 57.257 29.630 0.00 0.00 0.00 2.67
3911 4918 8.349245 CACAGATGTATGTTTTTACAGGACAAA 58.651 33.333 0.00 0.00 35.65 2.83
3917 4924 9.333497 CATGTTCACAGATGTATGTTTTTACAG 57.667 33.333 0.00 0.00 35.65 2.74
3918 4925 8.296000 CCATGTTCACAGATGTATGTTTTTACA 58.704 33.333 0.00 0.00 36.57 2.41
3947 4954 0.859232 CGAGTCACGTTTCCACTTGG 59.141 55.000 0.00 0.00 37.22 3.61
3960 4967 1.476891 GGATCCAAGCTACACGAGTCA 59.523 52.381 6.95 0.00 0.00 3.41
3965 4972 2.898729 ATCTGGATCCAAGCTACACG 57.101 50.000 17.00 1.11 0.00 4.49
4000 5015 8.746530 AGCTTAACAAATCATGATTGTGAAGAT 58.253 29.630 29.46 25.48 30.41 2.40
4001 5016 8.114331 AGCTTAACAAATCATGATTGTGAAGA 57.886 30.769 29.46 15.40 30.41 2.87
4019 5034 7.306283 CGCACAGAAGTAATGAGATAGCTTAAC 60.306 40.741 0.00 0.00 0.00 2.01
4028 5043 5.836821 AGATACGCACAGAAGTAATGAGA 57.163 39.130 0.00 0.00 0.00 3.27
4040 5055 7.277098 GGATTTTAGACAAGTAAGATACGCACA 59.723 37.037 0.00 0.00 0.00 4.57
4059 5074 6.528423 CCACGCAATAACGATTTTGGATTTTA 59.472 34.615 0.00 0.00 36.70 1.52
4075 5090 3.403968 TGTAAAACAGAGCCACGCAATA 58.596 40.909 0.00 0.00 0.00 1.90
4115 5130 7.607250 TGTCATATCCAAAAATAAACACCCAC 58.393 34.615 0.00 0.00 0.00 4.61
4168 5183 3.164268 AGATGTTTAACATTGCCAGCCA 58.836 40.909 12.13 0.00 39.27 4.75
4363 5378 5.970023 GCTCAGCAACTATCAATTAAAGCAG 59.030 40.000 0.00 0.00 0.00 4.24
4497 5512 7.368833 TGAGCTTAGAACAAACTGTAGTACTC 58.631 38.462 0.00 0.00 0.00 2.59
4830 6009 4.833390 AGCCAGACACAAGGAATAAGTAC 58.167 43.478 0.00 0.00 0.00 2.73
4906 6086 3.637229 ACAGTAGCTACAGTCACACAAGT 59.363 43.478 25.28 5.45 0.00 3.16
5023 6203 5.159209 GTGCCAGCATAAGCATTGATATTC 58.841 41.667 0.00 0.00 45.49 1.75
5034 6214 2.698855 ACTGTAGGTGCCAGCATAAG 57.301 50.000 0.00 0.00 33.09 1.73
5042 6222 3.251004 CACAGAAAGAAACTGTAGGTGCC 59.749 47.826 0.00 0.00 45.15 5.01
5127 6307 1.068194 GGACAGAGAGTTCACCTGACG 60.068 57.143 0.00 0.00 0.00 4.35
5135 6316 3.056465 ACGGATTGAAGGACAGAGAGTTC 60.056 47.826 0.00 0.00 0.00 3.01
5156 6337 7.333528 TGTAGCCAAGATCCATTCATTAAAC 57.666 36.000 0.00 0.00 0.00 2.01
5222 6403 3.401182 AGCATGCAAGCTTCTAGATAGC 58.599 45.455 21.98 15.13 43.70 2.97
5296 6477 7.494625 TCGATAAAACAAAAGAGAACTGACTGT 59.505 33.333 0.00 0.00 0.00 3.55
5328 6512 9.424319 GTAGACTGATCAATAACAAACAGAGAA 57.576 33.333 0.00 0.00 0.00 2.87
5382 6578 4.782156 CGCAAACACAACAACATCAGATA 58.218 39.130 0.00 0.00 0.00 1.98
5472 6668 1.201647 CTTTTGTCTGCAGCATGGGAG 59.798 52.381 9.47 0.00 35.86 4.30
5522 6718 6.429385 GGATATGGGAGCAGATTTGACTTAAG 59.571 42.308 0.00 0.00 0.00 1.85
5525 6721 4.414846 AGGATATGGGAGCAGATTTGACTT 59.585 41.667 0.00 0.00 0.00 3.01
5546 6742 2.352030 CCAGCTGCAAATGTAACACAGG 60.352 50.000 8.66 0.00 0.00 4.00
5549 6745 1.701704 GCCAGCTGCAAATGTAACAC 58.298 50.000 8.66 0.00 40.77 3.32
5566 6762 3.797865 GCCAGCAACAAATATCAGATGCC 60.798 47.826 0.00 0.00 34.52 4.40
5576 6772 1.401761 TGAGTGTGCCAGCAACAAAT 58.598 45.000 0.00 0.00 0.00 2.32
5631 6828 2.297597 AGGTCATACTAGAAGCCATCGC 59.702 50.000 0.00 0.00 0.00 4.58
5632 6829 4.592485 AAGGTCATACTAGAAGCCATCG 57.408 45.455 0.00 0.00 0.00 3.84
5635 6832 6.294564 CGCTTATAAGGTCATACTAGAAGCCA 60.295 42.308 14.28 0.00 34.65 4.75
5636 6833 6.072064 TCGCTTATAAGGTCATACTAGAAGCC 60.072 42.308 14.28 0.00 34.65 4.35
5638 6835 7.971168 CCATCGCTTATAAGGTCATACTAGAAG 59.029 40.741 14.28 0.00 0.00 2.85
5640 6837 6.127703 GCCATCGCTTATAAGGTCATACTAGA 60.128 42.308 14.28 0.00 0.00 2.43
5641 6838 6.037098 GCCATCGCTTATAAGGTCATACTAG 58.963 44.000 14.28 0.00 0.00 2.57
5642 6839 5.715279 AGCCATCGCTTATAAGGTCATACTA 59.285 40.000 14.28 0.00 45.55 1.82
5658 6855 2.297597 AGGTCATACTAGAAGCCATCGC 59.702 50.000 0.00 0.00 0.00 4.58
5659 6856 4.592485 AAGGTCATACTAGAAGCCATCG 57.408 45.455 0.00 0.00 0.00 3.84
5660 6857 7.762159 GCTTATAAGGTCATACTAGAAGCCATC 59.238 40.741 14.28 0.00 32.54 3.51
5662 6859 6.294564 CGCTTATAAGGTCATACTAGAAGCCA 60.295 42.308 14.28 0.00 34.65 4.75
5663 6860 6.072064 TCGCTTATAAGGTCATACTAGAAGCC 60.072 42.308 14.28 0.00 34.65 4.35
5664 6861 6.910995 TCGCTTATAAGGTCATACTAGAAGC 58.089 40.000 14.28 0.00 34.76 3.86
5665 6862 7.971168 CCATCGCTTATAAGGTCATACTAGAAG 59.029 40.741 14.28 0.00 0.00 2.85
5666 6863 7.577046 GCCATCGCTTATAAGGTCATACTAGAA 60.577 40.741 14.28 0.00 0.00 2.10
5667 6864 6.127703 GCCATCGCTTATAAGGTCATACTAGA 60.128 42.308 14.28 0.00 0.00 2.43
5668 6865 6.037098 GCCATCGCTTATAAGGTCATACTAG 58.963 44.000 14.28 0.00 0.00 2.57
5669 6866 5.715279 AGCCATCGCTTATAAGGTCATACTA 59.285 40.000 14.28 0.00 45.55 1.82
5670 6867 4.528596 AGCCATCGCTTATAAGGTCATACT 59.471 41.667 14.28 0.00 45.55 2.12
5671 6868 4.822026 AGCCATCGCTTATAAGGTCATAC 58.178 43.478 14.28 0.00 45.55 2.39
5685 6882 2.297597 AGGTCATACTAGAAGCCATCGC 59.702 50.000 0.00 0.00 0.00 4.58
5686 6883 4.592485 AAGGTCATACTAGAAGCCATCG 57.408 45.455 0.00 0.00 0.00 3.84
5687 6884 8.808092 ACTTATAAGGTCATACTAGAAGCCATC 58.192 37.037 16.73 0.00 0.00 3.51
5688 6885 8.728596 ACTTATAAGGTCATACTAGAAGCCAT 57.271 34.615 16.73 0.00 0.00 4.40
5689 6886 9.650714 TTACTTATAAGGTCATACTAGAAGCCA 57.349 33.333 16.73 0.00 0.00 4.75
5690 6887 9.911138 GTTACTTATAAGGTCATACTAGAAGCC 57.089 37.037 16.73 0.00 0.00 4.35
5730 6927 9.013490 CATGTGTTAGCAATTTATTTACAGAGC 57.987 33.333 0.00 0.00 0.00 4.09
5770 6969 4.763793 AGGTGTTCATCTTTTGTCCAGATG 59.236 41.667 3.88 3.88 46.32 2.90
5798 6997 2.149578 CTCAAAGGCAGTCCACAGAAG 58.850 52.381 0.00 0.00 33.74 2.85
5842 7041 2.332063 AATCGAACGGAAGATGGCAT 57.668 45.000 0.00 0.00 0.00 4.40
5844 7043 1.737793 ACAAATCGAACGGAAGATGGC 59.262 47.619 0.00 0.00 0.00 4.40
5845 7044 2.095853 CCACAAATCGAACGGAAGATGG 59.904 50.000 0.00 0.00 0.00 3.51
5856 7055 6.324561 TGACAAAATTCATCCACAAATCGA 57.675 33.333 0.00 0.00 0.00 3.59
5867 7066 6.809689 CACACACAGCATATGACAAAATTCAT 59.190 34.615 6.97 0.00 39.61 2.57
5889 7088 1.000843 CGATCCTGAAGGTGACACACA 59.999 52.381 8.08 3.81 35.86 3.72
5890 7089 1.673033 CCGATCCTGAAGGTGACACAC 60.673 57.143 8.08 0.00 36.34 3.82
5891 7090 0.608130 CCGATCCTGAAGGTGACACA 59.392 55.000 8.08 0.00 36.34 3.72
5892 7091 0.741221 GCCGATCCTGAAGGTGACAC 60.741 60.000 0.00 0.00 36.34 3.67
5893 7092 1.596934 GCCGATCCTGAAGGTGACA 59.403 57.895 0.00 0.00 36.34 3.58
5894 7093 1.519455 CGCCGATCCTGAAGGTGAC 60.519 63.158 0.00 0.00 37.73 3.67
6113 7315 0.394899 CATCAGGGAAGAGGTTGGGC 60.395 60.000 0.00 0.00 0.00 5.36
6120 7359 1.404717 CGTCCACACATCAGGGAAGAG 60.405 57.143 0.00 0.00 32.80 2.85
6157 7403 2.352814 CCACTCACCCAAAGACTACGAG 60.353 54.545 0.00 0.00 0.00 4.18
6302 7548 2.223180 GGACACACAAACGTTTCCAGAC 60.223 50.000 11.37 2.34 36.05 3.51
6312 7558 0.665835 TTCGGCATGGACACACAAAC 59.334 50.000 0.00 0.00 0.00 2.93
6358 7607 1.643292 CTGACAACAGGCACACACG 59.357 57.895 0.00 0.00 40.14 4.49
6400 7674 3.185188 CACCGAGTCACAATTCAGTTCAG 59.815 47.826 0.00 0.00 0.00 3.02
6401 7675 3.130633 CACCGAGTCACAATTCAGTTCA 58.869 45.455 0.00 0.00 0.00 3.18
6402 7676 2.096218 GCACCGAGTCACAATTCAGTTC 60.096 50.000 0.00 0.00 0.00 3.01
6403 7677 1.873591 GCACCGAGTCACAATTCAGTT 59.126 47.619 0.00 0.00 0.00 3.16
6404 7678 1.070758 AGCACCGAGTCACAATTCAGT 59.929 47.619 0.00 0.00 0.00 3.41
6414 7688 2.179517 CCACGAGAGCACCGAGTC 59.820 66.667 0.00 0.00 0.00 3.36
6448 7722 2.832201 AGTAGAGGCCCGGCGTAC 60.832 66.667 4.17 5.90 0.00 3.67
6452 7726 0.107165 ATTTTCAGTAGAGGCCCGGC 60.107 55.000 0.00 0.00 0.00 6.13
6453 7727 1.486726 AGATTTTCAGTAGAGGCCCGG 59.513 52.381 0.00 0.00 0.00 5.73
6454 7728 2.555199 CAGATTTTCAGTAGAGGCCCG 58.445 52.381 0.00 0.00 0.00 6.13
6455 7729 2.092699 AGCAGATTTTCAGTAGAGGCCC 60.093 50.000 0.00 0.00 0.00 5.80
6456 7730 3.274095 AGCAGATTTTCAGTAGAGGCC 57.726 47.619 0.00 0.00 0.00 5.19
6475 7758 2.047151 AAGGCGTTGCGTGTGTGAAG 62.047 55.000 0.00 0.00 0.00 3.02
6476 7759 2.109739 AAGGCGTTGCGTGTGTGAA 61.110 52.632 0.00 0.00 0.00 3.18
6502 7785 2.202479 GATTGCGCCGTGGAAAGC 60.202 61.111 4.18 0.00 0.00 3.51
6662 7954 1.457346 GAGCTTGCATACTGGCAGTT 58.543 50.000 27.24 10.88 45.88 3.16
6834 8138 2.058798 CGTACGCATCTGTTGTTGACT 58.941 47.619 0.52 0.00 0.00 3.41
6855 8182 2.555199 GCATCTCTCGCAATACAAGGT 58.445 47.619 0.00 0.00 0.00 3.50
6863 8190 2.496341 CGAGGGCATCTCTCGCAA 59.504 61.111 3.01 0.00 45.67 4.85
6886 8213 5.541845 CAGTGTGAAAGGTCTATCACTTGA 58.458 41.667 7.35 0.00 44.86 3.02
6973 8300 8.625786 AGCCTAGTAATTTTTCTTCGGTTTTA 57.374 30.769 0.00 0.00 0.00 1.52
6982 8309 9.794719 AAAGTTACAGAGCCTAGTAATTTTTCT 57.205 29.630 0.00 0.00 37.04 2.52
6999 8326 2.028020 AGGAAGGAGCCGAAAGTTACAG 60.028 50.000 0.00 0.00 0.00 2.74
7013 8340 1.677552 GGCAGGAACGAAGGAAGGA 59.322 57.895 0.00 0.00 0.00 3.36
7029 8356 0.802494 CACCAACCACAAGATACGGC 59.198 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.