Multiple sequence alignment - TraesCS5D01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G336700 chr5D 100.000 5537 0 0 1 5537 425999080 426004616 0.000000e+00 10226.0
1 TraesCS5D01G336700 chr5D 100.000 1203 0 0 5819 7021 426004898 426006100 0.000000e+00 2222.0
2 TraesCS5D01G336700 chr5D 94.172 326 16 3 123 446 421161371 421161047 1.760000e-135 494.0
3 TraesCS5D01G336700 chr5D 93.252 326 19 3 123 446 395443539 395443863 1.770000e-130 477.0
4 TraesCS5D01G336700 chr5D 92.661 327 17 5 123 446 365697037 365697359 1.380000e-126 464.0
5 TraesCS5D01G336700 chr5A 95.753 5157 106 39 448 5537 540280240 540285350 0.000000e+00 8205.0
6 TraesCS5D01G336700 chr5A 95.598 1204 36 6 5819 7021 540285504 540286691 0.000000e+00 1914.0
7 TraesCS5D01G336700 chr5A 97.500 40 0 1 2665 2704 473098667 473098705 4.550000e-07 67.6
8 TraesCS5D01G336700 chr5B 95.596 2929 65 16 448 3337 515573935 515576838 0.000000e+00 4636.0
9 TraesCS5D01G336700 chr5B 96.626 2193 40 11 3350 5537 515576823 515578986 0.000000e+00 3609.0
10 TraesCS5D01G336700 chr5B 96.678 1204 23 4 5819 7021 515579140 515580327 0.000000e+00 1986.0
11 TraesCS5D01G336700 chr5B 95.455 44 1 1 2666 2709 439953137 439953179 1.260000e-07 69.4
12 TraesCS5D01G336700 chrUn 94.172 326 16 3 123 446 270058998 270058674 1.760000e-135 494.0
13 TraesCS5D01G336700 chr2D 93.051 331 20 3 122 450 255928408 255928079 1.370000e-131 481.0
14 TraesCS5D01G336700 chr7A 93.252 326 19 3 123 446 465566628 465566304 1.770000e-130 477.0
15 TraesCS5D01G336700 chr4A 93.009 329 20 3 120 446 106574996 106575323 1.770000e-130 477.0
16 TraesCS5D01G336700 chr4B 92.879 323 20 3 123 443 116602515 116602836 3.840000e-127 466.0
17 TraesCS5D01G336700 chr7D 91.940 335 22 5 123 453 226701028 226700695 1.380000e-126 464.0
18 TraesCS5D01G336700 chr1A 97.826 46 0 1 2665 2709 486403242 486403287 2.100000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G336700 chr5D 425999080 426006100 7020 False 6224.000000 10226 100.0000 1 7021 2 chr5D.!!$F3 7020
1 TraesCS5D01G336700 chr5A 540280240 540286691 6451 False 5059.500000 8205 95.6755 448 7021 2 chr5A.!!$F2 6573
2 TraesCS5D01G336700 chr5B 515573935 515580327 6392 False 3410.333333 4636 96.3000 448 7021 3 chr5B.!!$F2 6573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.033781 AACCAATGCATGCGCTTTGT 59.966 45.000 14.09 8.32 46.58 2.83 F
282 283 0.668096 ACCAATGCATGCGCTTTGTG 60.668 50.000 14.09 12.22 46.58 3.33 F
396 397 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08 F
1307 1346 0.686769 CCCGGCAAGGTACCTACTCT 60.687 60.000 16.67 0.00 38.74 3.24 F
1308 1347 1.410648 CCCGGCAAGGTACCTACTCTA 60.411 57.143 16.67 0.00 38.74 2.43 F
3298 3387 0.967380 CCTGGTTCCATCTGTTGCCC 60.967 60.000 0.00 0.00 0.00 5.36 F
4878 4969 0.039618 GCCAAATTGGAGGGTGAGGA 59.960 55.000 17.47 0.00 40.96 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1340 0.797249 GGTGTGCGTGCGTAGAGTAG 60.797 60.000 0.00 0.0 0.00 2.57 R
1302 1341 1.210931 GGTGTGCGTGCGTAGAGTA 59.789 57.895 0.00 0.0 0.00 2.59 R
1867 1952 1.540580 GCTAGAATAACGTGCCCTCCC 60.541 57.143 0.00 0.0 0.00 4.30 R
2659 2746 1.973281 CGCCTGCCTGAACCATGTT 60.973 57.895 0.00 0.0 0.00 2.71 R
3305 3394 5.803461 TGACCGAATAACTGATTGTTAGACG 59.197 40.000 0.00 0.0 43.46 4.18 R
4932 5023 1.373497 GTGACAGCCTGTCCACTCG 60.373 63.158 21.57 0.0 46.40 4.18 R
6131 6228 0.599991 TCAAGCACGCACGTCTCAAT 60.600 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.926729 AGCCCGAGAATAGACCTGA 57.073 52.632 0.00 0.00 0.00 3.86
19 20 2.160721 AGCCCGAGAATAGACCTGAA 57.839 50.000 0.00 0.00 0.00 3.02
20 21 2.467880 AGCCCGAGAATAGACCTGAAA 58.532 47.619 0.00 0.00 0.00 2.69
21 22 2.838202 AGCCCGAGAATAGACCTGAAAA 59.162 45.455 0.00 0.00 0.00 2.29
22 23 3.118592 AGCCCGAGAATAGACCTGAAAAG 60.119 47.826 0.00 0.00 0.00 2.27
23 24 3.369576 GCCCGAGAATAGACCTGAAAAGT 60.370 47.826 0.00 0.00 0.00 2.66
24 25 4.434520 CCCGAGAATAGACCTGAAAAGTC 58.565 47.826 0.00 0.00 34.31 3.01
25 26 4.160626 CCCGAGAATAGACCTGAAAAGTCT 59.839 45.833 0.00 0.00 46.22 3.24
26 27 5.344884 CCGAGAATAGACCTGAAAAGTCTC 58.655 45.833 0.00 0.00 43.48 3.36
27 28 5.126384 CCGAGAATAGACCTGAAAAGTCTCT 59.874 44.000 0.00 0.00 43.48 3.10
28 29 6.033341 CGAGAATAGACCTGAAAAGTCTCTG 58.967 44.000 0.00 0.00 43.48 3.35
29 30 6.127869 CGAGAATAGACCTGAAAAGTCTCTGA 60.128 42.308 0.00 0.00 43.48 3.27
30 31 7.169158 AGAATAGACCTGAAAAGTCTCTGAG 57.831 40.000 0.00 0.00 43.48 3.35
31 32 6.951198 AGAATAGACCTGAAAAGTCTCTGAGA 59.049 38.462 2.58 2.58 43.48 3.27
32 33 4.864704 AGACCTGAAAAGTCTCTGAGAC 57.135 45.455 26.43 26.43 45.38 3.36
33 34 3.576550 AGACCTGAAAAGTCTCTGAGACC 59.423 47.826 29.07 16.86 46.18 3.85
34 35 3.309296 ACCTGAAAAGTCTCTGAGACCA 58.691 45.455 29.07 19.92 46.18 4.02
35 36 3.906846 ACCTGAAAAGTCTCTGAGACCAT 59.093 43.478 29.07 18.31 46.18 3.55
36 37 5.087323 ACCTGAAAAGTCTCTGAGACCATA 58.913 41.667 29.07 13.64 46.18 2.74
37 38 5.046950 ACCTGAAAAGTCTCTGAGACCATAC 60.047 44.000 29.07 19.70 46.18 2.39
38 39 5.186797 CCTGAAAAGTCTCTGAGACCATACT 59.813 44.000 29.07 11.71 46.18 2.12
39 40 6.378564 CCTGAAAAGTCTCTGAGACCATACTA 59.621 42.308 29.07 13.80 46.18 1.82
40 41 7.093727 CCTGAAAAGTCTCTGAGACCATACTAA 60.094 40.741 29.07 11.95 46.18 2.24
41 42 8.190326 TGAAAAGTCTCTGAGACCATACTAAA 57.810 34.615 29.07 9.33 46.18 1.85
42 43 8.307483 TGAAAAGTCTCTGAGACCATACTAAAG 58.693 37.037 29.07 0.00 46.18 1.85
43 44 8.423906 AAAAGTCTCTGAGACCATACTAAAGA 57.576 34.615 29.07 0.00 46.18 2.52
44 45 8.423906 AAAGTCTCTGAGACCATACTAAAGAA 57.576 34.615 29.07 0.00 46.18 2.52
45 46 8.423906 AAGTCTCTGAGACCATACTAAAGAAA 57.576 34.615 29.07 0.00 46.18 2.52
46 47 7.832769 AGTCTCTGAGACCATACTAAAGAAAC 58.167 38.462 29.07 4.36 46.18 2.78
47 48 7.036829 GTCTCTGAGACCATACTAAAGAAACC 58.963 42.308 24.05 0.00 39.28 3.27
48 49 6.154706 TCTCTGAGACCATACTAAAGAAACCC 59.845 42.308 2.58 0.00 0.00 4.11
49 50 6.023603 TCTGAGACCATACTAAAGAAACCCT 58.976 40.000 0.00 0.00 0.00 4.34
50 51 6.154706 TCTGAGACCATACTAAAGAAACCCTC 59.845 42.308 0.00 0.00 0.00 4.30
51 52 5.783360 TGAGACCATACTAAAGAAACCCTCA 59.217 40.000 0.00 0.00 0.00 3.86
52 53 6.443849 TGAGACCATACTAAAGAAACCCTCAT 59.556 38.462 0.00 0.00 0.00 2.90
53 54 7.037586 TGAGACCATACTAAAGAAACCCTCATT 60.038 37.037 0.00 0.00 0.00 2.57
54 55 8.388656 AGACCATACTAAAGAAACCCTCATTA 57.611 34.615 0.00 0.00 0.00 1.90
55 56 9.004231 AGACCATACTAAAGAAACCCTCATTAT 57.996 33.333 0.00 0.00 0.00 1.28
56 57 8.980481 ACCATACTAAAGAAACCCTCATTATG 57.020 34.615 0.00 0.00 0.00 1.90
57 58 7.998964 ACCATACTAAAGAAACCCTCATTATGG 59.001 37.037 0.00 0.00 0.00 2.74
58 59 7.998964 CCATACTAAAGAAACCCTCATTATGGT 59.001 37.037 0.00 0.00 36.06 3.55
59 60 9.408648 CATACTAAAGAAACCCTCATTATGGTT 57.591 33.333 0.00 0.00 46.63 3.67
67 68 5.255397 ACCCTCATTATGGTTTCTTGACA 57.745 39.130 0.00 0.00 0.00 3.58
68 69 5.010282 ACCCTCATTATGGTTTCTTGACAC 58.990 41.667 0.00 0.00 0.00 3.67
69 70 5.009631 CCCTCATTATGGTTTCTTGACACA 58.990 41.667 0.00 0.00 0.00 3.72
70 71 5.124457 CCCTCATTATGGTTTCTTGACACAG 59.876 44.000 0.00 0.00 0.00 3.66
71 72 5.392380 CCTCATTATGGTTTCTTGACACAGC 60.392 44.000 0.00 0.00 0.00 4.40
72 73 4.154015 TCATTATGGTTTCTTGACACAGCG 59.846 41.667 0.00 0.00 0.00 5.18
73 74 1.967319 ATGGTTTCTTGACACAGCGT 58.033 45.000 0.00 0.00 0.00 5.07
74 75 1.295792 TGGTTTCTTGACACAGCGTC 58.704 50.000 0.00 0.00 45.61 5.19
81 82 4.870305 GACACAGCGTCATCGACT 57.130 55.556 0.00 0.00 44.69 4.18
82 83 2.643044 GACACAGCGTCATCGACTC 58.357 57.895 0.00 0.00 44.69 3.36
83 84 0.169230 GACACAGCGTCATCGACTCT 59.831 55.000 0.00 0.00 44.69 3.24
84 85 1.397343 GACACAGCGTCATCGACTCTA 59.603 52.381 0.00 0.00 44.69 2.43
85 86 1.810755 ACACAGCGTCATCGACTCTAA 59.189 47.619 0.00 0.00 39.71 2.10
86 87 2.423892 ACACAGCGTCATCGACTCTAAT 59.576 45.455 0.00 0.00 39.71 1.73
87 88 3.039405 CACAGCGTCATCGACTCTAATC 58.961 50.000 0.00 0.00 39.71 1.75
88 89 2.946329 ACAGCGTCATCGACTCTAATCT 59.054 45.455 0.00 0.00 39.71 2.40
89 90 3.378742 ACAGCGTCATCGACTCTAATCTT 59.621 43.478 0.00 0.00 39.71 2.40
90 91 3.728221 CAGCGTCATCGACTCTAATCTTG 59.272 47.826 0.00 0.00 39.71 3.02
91 92 3.046390 GCGTCATCGACTCTAATCTTGG 58.954 50.000 0.00 0.00 39.71 3.61
92 93 3.046390 CGTCATCGACTCTAATCTTGGC 58.954 50.000 0.00 0.00 39.71 4.52
93 94 3.243234 CGTCATCGACTCTAATCTTGGCT 60.243 47.826 0.00 0.00 39.71 4.75
94 95 4.023963 CGTCATCGACTCTAATCTTGGCTA 60.024 45.833 0.00 0.00 39.71 3.93
95 96 5.216648 GTCATCGACTCTAATCTTGGCTAC 58.783 45.833 0.00 0.00 0.00 3.58
96 97 4.887655 TCATCGACTCTAATCTTGGCTACA 59.112 41.667 0.00 0.00 0.00 2.74
97 98 4.634184 TCGACTCTAATCTTGGCTACAC 57.366 45.455 0.00 0.00 0.00 2.90
98 99 3.380637 TCGACTCTAATCTTGGCTACACC 59.619 47.826 0.00 0.00 39.84 4.16
107 108 1.369692 TGGCTACACCAGAACACGG 59.630 57.895 0.00 0.00 46.36 4.94
108 109 1.370064 GGCTACACCAGAACACGGT 59.630 57.895 0.00 0.00 38.86 4.83
113 114 3.566210 ACCAGAACACGGTGGGGG 61.566 66.667 13.48 10.09 38.25 5.40
114 115 3.246112 CCAGAACACGGTGGGGGA 61.246 66.667 13.48 0.00 0.00 4.81
115 116 2.347490 CAGAACACGGTGGGGGAG 59.653 66.667 13.48 0.00 0.00 4.30
116 117 2.203182 AGAACACGGTGGGGGAGA 59.797 61.111 13.48 0.00 0.00 3.71
117 118 1.460689 AGAACACGGTGGGGGAGAA 60.461 57.895 13.48 0.00 0.00 2.87
118 119 1.003718 GAACACGGTGGGGGAGAAG 60.004 63.158 13.48 0.00 0.00 2.85
119 120 1.460689 AACACGGTGGGGGAGAAGA 60.461 57.895 13.48 0.00 0.00 2.87
120 121 1.765597 AACACGGTGGGGGAGAAGAC 61.766 60.000 13.48 0.00 0.00 3.01
121 122 2.606826 ACGGTGGGGGAGAAGACC 60.607 66.667 0.00 0.00 0.00 3.85
122 123 2.284699 CGGTGGGGGAGAAGACCT 60.285 66.667 0.00 0.00 0.00 3.85
123 124 1.001248 CGGTGGGGGAGAAGACCTA 59.999 63.158 0.00 0.00 0.00 3.08
124 125 1.328430 CGGTGGGGGAGAAGACCTAC 61.328 65.000 0.00 0.00 37.49 3.18
125 126 0.042881 GGTGGGGGAGAAGACCTACT 59.957 60.000 0.00 0.00 38.21 2.57
126 127 1.487300 GTGGGGGAGAAGACCTACTC 58.513 60.000 0.00 0.00 35.58 2.59
131 132 2.076207 GGAGAAGACCTACTCCCTCC 57.924 60.000 0.00 0.00 44.70 4.30
132 133 1.571936 GGAGAAGACCTACTCCCTCCT 59.428 57.143 0.00 0.00 44.70 3.69
133 134 2.023791 GGAGAAGACCTACTCCCTCCTT 60.024 54.545 0.00 0.00 44.70 3.36
134 135 3.566997 GGAGAAGACCTACTCCCTCCTTT 60.567 52.174 0.00 0.00 44.70 3.11
135 136 4.098155 GAGAAGACCTACTCCCTCCTTTT 58.902 47.826 0.00 0.00 0.00 2.27
136 137 4.098155 AGAAGACCTACTCCCTCCTTTTC 58.902 47.826 0.00 0.00 0.00 2.29
137 138 2.458620 AGACCTACTCCCTCCTTTTCG 58.541 52.381 0.00 0.00 0.00 3.46
138 139 1.481363 GACCTACTCCCTCCTTTTCGG 59.519 57.143 0.00 0.00 0.00 4.30
139 140 1.203275 ACCTACTCCCTCCTTTTCGGT 60.203 52.381 0.00 0.00 0.00 4.69
140 141 1.907255 CCTACTCCCTCCTTTTCGGTT 59.093 52.381 0.00 0.00 0.00 4.44
141 142 2.305052 CCTACTCCCTCCTTTTCGGTTT 59.695 50.000 0.00 0.00 0.00 3.27
142 143 3.516700 CCTACTCCCTCCTTTTCGGTTTA 59.483 47.826 0.00 0.00 0.00 2.01
143 144 4.163649 CCTACTCCCTCCTTTTCGGTTTAT 59.836 45.833 0.00 0.00 0.00 1.40
144 145 5.364735 CCTACTCCCTCCTTTTCGGTTTATA 59.635 44.000 0.00 0.00 0.00 0.98
145 146 5.767277 ACTCCCTCCTTTTCGGTTTATAA 57.233 39.130 0.00 0.00 0.00 0.98
146 147 5.742063 ACTCCCTCCTTTTCGGTTTATAAG 58.258 41.667 0.00 0.00 0.00 1.73
147 148 5.106876 TCCCTCCTTTTCGGTTTATAAGG 57.893 43.478 0.00 0.00 38.78 2.69
148 149 3.630769 CCCTCCTTTTCGGTTTATAAGGC 59.369 47.826 0.00 0.00 37.62 4.35
149 150 4.524053 CCTCCTTTTCGGTTTATAAGGCT 58.476 43.478 0.00 0.00 37.62 4.58
150 151 4.948004 CCTCCTTTTCGGTTTATAAGGCTT 59.052 41.667 4.58 4.58 37.62 4.35
151 152 6.117488 CCTCCTTTTCGGTTTATAAGGCTTA 58.883 40.000 9.79 9.79 37.62 3.09
152 153 6.771267 CCTCCTTTTCGGTTTATAAGGCTTAT 59.229 38.462 22.36 22.36 37.62 1.73
153 154 7.041303 CCTCCTTTTCGGTTTATAAGGCTTATC 60.041 40.741 22.39 9.18 37.62 1.75
154 155 7.571025 TCCTTTTCGGTTTATAAGGCTTATCT 58.429 34.615 22.39 4.32 37.62 1.98
155 156 8.050930 TCCTTTTCGGTTTATAAGGCTTATCTT 58.949 33.333 22.39 3.57 37.62 2.40
156 157 9.333724 CCTTTTCGGTTTATAAGGCTTATCTTA 57.666 33.333 22.39 7.64 31.59 2.10
194 195 9.849166 TTTCTCGTTTTATAAGGCTTAATTTGG 57.151 29.630 11.59 0.17 0.00 3.28
195 196 8.570068 TCTCGTTTTATAAGGCTTAATTTGGT 57.430 30.769 11.59 0.00 0.00 3.67
196 197 9.016438 TCTCGTTTTATAAGGCTTAATTTGGTT 57.984 29.630 11.59 0.00 0.00 3.67
197 198 8.973835 TCGTTTTATAAGGCTTAATTTGGTTG 57.026 30.769 11.59 0.00 0.00 3.77
198 199 8.578151 TCGTTTTATAAGGCTTAATTTGGTTGT 58.422 29.630 11.59 0.00 0.00 3.32
199 200 9.198837 CGTTTTATAAGGCTTAATTTGGTTGTT 57.801 29.630 11.59 0.00 0.00 2.83
202 203 9.713713 TTTATAAGGCTTAATTTGGTTGTTTCC 57.286 29.630 11.59 0.00 0.00 3.13
203 204 4.617253 AGGCTTAATTTGGTTGTTTCCC 57.383 40.909 0.00 0.00 0.00 3.97
204 205 3.970640 AGGCTTAATTTGGTTGTTTCCCA 59.029 39.130 0.00 0.00 0.00 4.37
205 206 4.597075 AGGCTTAATTTGGTTGTTTCCCAT 59.403 37.500 0.00 0.00 0.00 4.00
206 207 4.935205 GGCTTAATTTGGTTGTTTCCCATC 59.065 41.667 0.00 0.00 0.00 3.51
207 208 5.512232 GGCTTAATTTGGTTGTTTCCCATCA 60.512 40.000 0.00 0.00 0.00 3.07
208 209 5.408299 GCTTAATTTGGTTGTTTCCCATCAC 59.592 40.000 0.00 0.00 0.00 3.06
209 210 6.485830 TTAATTTGGTTGTTTCCCATCACA 57.514 33.333 0.00 0.00 0.00 3.58
210 211 5.565455 AATTTGGTTGTTTCCCATCACAT 57.435 34.783 0.00 0.00 0.00 3.21
211 212 4.333913 TTTGGTTGTTTCCCATCACATG 57.666 40.909 0.00 0.00 0.00 3.21
212 213 2.956132 TGGTTGTTTCCCATCACATGT 58.044 42.857 0.00 0.00 0.00 3.21
213 214 3.303938 TGGTTGTTTCCCATCACATGTT 58.696 40.909 0.00 0.00 0.00 2.71
214 215 3.320541 TGGTTGTTTCCCATCACATGTTC 59.679 43.478 0.00 0.00 0.00 3.18
215 216 3.320541 GGTTGTTTCCCATCACATGTTCA 59.679 43.478 0.00 0.00 0.00 3.18
216 217 4.549458 GTTGTTTCCCATCACATGTTCAG 58.451 43.478 0.00 0.00 0.00 3.02
217 218 4.097551 TGTTTCCCATCACATGTTCAGA 57.902 40.909 0.00 0.00 0.00 3.27
218 219 4.665451 TGTTTCCCATCACATGTTCAGAT 58.335 39.130 0.00 0.00 0.00 2.90
219 220 5.078949 TGTTTCCCATCACATGTTCAGATT 58.921 37.500 0.00 0.00 0.00 2.40
220 221 5.539574 TGTTTCCCATCACATGTTCAGATTT 59.460 36.000 0.00 0.00 0.00 2.17
221 222 6.041865 TGTTTCCCATCACATGTTCAGATTTT 59.958 34.615 0.00 0.00 0.00 1.82
222 223 7.232330 TGTTTCCCATCACATGTTCAGATTTTA 59.768 33.333 0.00 0.00 0.00 1.52
223 224 7.773489 TTCCCATCACATGTTCAGATTTTAA 57.227 32.000 0.00 0.00 0.00 1.52
224 225 7.395190 TCCCATCACATGTTCAGATTTTAAG 57.605 36.000 0.00 0.00 0.00 1.85
225 226 6.377996 TCCCATCACATGTTCAGATTTTAAGG 59.622 38.462 0.00 0.00 0.00 2.69
226 227 6.153340 CCCATCACATGTTCAGATTTTAAGGT 59.847 38.462 0.00 0.00 0.00 3.50
227 228 7.031372 CCATCACATGTTCAGATTTTAAGGTG 58.969 38.462 0.00 0.00 0.00 4.00
228 229 6.012658 TCACATGTTCAGATTTTAAGGTGC 57.987 37.500 0.00 0.00 0.00 5.01
229 230 5.534278 TCACATGTTCAGATTTTAAGGTGCA 59.466 36.000 0.00 0.00 0.00 4.57
230 231 6.209192 TCACATGTTCAGATTTTAAGGTGCAT 59.791 34.615 0.00 0.00 0.00 3.96
231 232 6.869913 CACATGTTCAGATTTTAAGGTGCATT 59.130 34.615 0.00 0.00 0.00 3.56
232 233 8.028354 CACATGTTCAGATTTTAAGGTGCATTA 58.972 33.333 0.00 0.00 0.00 1.90
233 234 8.584157 ACATGTTCAGATTTTAAGGTGCATTAA 58.416 29.630 0.00 0.00 0.00 1.40
234 235 9.421806 CATGTTCAGATTTTAAGGTGCATTAAA 57.578 29.630 1.89 1.89 33.83 1.52
236 237 9.638239 TGTTCAGATTTTAAGGTGCATTAAATC 57.362 29.630 6.16 8.96 35.24 2.17
237 238 9.638239 GTTCAGATTTTAAGGTGCATTAAATCA 57.362 29.630 16.80 3.54 35.24 2.57
241 242 9.101655 AGATTTTAAGGTGCATTAAATCATTGC 57.898 29.630 16.80 0.00 35.24 3.56
242 243 8.789825 ATTTTAAGGTGCATTAAATCATTGCA 57.210 26.923 6.16 0.00 43.63 4.08
243 244 8.789825 TTTTAAGGTGCATTAAATCATTGCAT 57.210 26.923 4.14 0.00 46.90 3.96
244 245 7.773864 TTAAGGTGCATTAAATCATTGCATG 57.226 32.000 4.14 0.00 46.90 4.06
245 246 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
246 247 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
247 248 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
248 249 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
249 250 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
250 251 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
251 252 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
252 253 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
253 254 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
277 278 2.965572 AAATAACCAATGCATGCGCT 57.034 40.000 14.09 0.00 39.64 5.92
278 279 2.965572 AATAACCAATGCATGCGCTT 57.034 40.000 14.09 6.34 39.64 4.68
279 280 2.965572 ATAACCAATGCATGCGCTTT 57.034 40.000 14.09 3.79 39.64 3.51
281 282 0.033781 AACCAATGCATGCGCTTTGT 59.966 45.000 14.09 8.32 46.58 2.83
282 283 0.668096 ACCAATGCATGCGCTTTGTG 60.668 50.000 14.09 12.22 46.58 3.33
283 284 1.418367 CAATGCATGCGCTTTGTGC 59.582 52.632 14.09 14.26 44.29 4.57
289 290 2.651945 TGCGCTTTGTGCATGCAT 59.348 50.000 25.64 0.00 44.36 3.96
290 291 1.734837 TGCGCTTTGTGCATGCATG 60.735 52.632 25.64 22.70 44.36 4.06
346 347 7.713764 GTTTGAGGAAAACAAGCACATTAAT 57.286 32.000 0.00 0.00 46.30 1.40
347 348 8.141835 GTTTGAGGAAAACAAGCACATTAATT 57.858 30.769 0.00 0.00 46.30 1.40
348 349 7.712264 TTGAGGAAAACAAGCACATTAATTG 57.288 32.000 0.00 0.00 0.00 2.32
349 350 7.048629 TGAGGAAAACAAGCACATTAATTGA 57.951 32.000 0.00 0.00 0.00 2.57
350 351 7.669427 TGAGGAAAACAAGCACATTAATTGAT 58.331 30.769 0.00 0.00 0.00 2.57
351 352 8.149647 TGAGGAAAACAAGCACATTAATTGATT 58.850 29.630 0.00 0.00 0.00 2.57
352 353 8.314143 AGGAAAACAAGCACATTAATTGATTG 57.686 30.769 18.55 18.55 0.00 2.67
353 354 7.388500 AGGAAAACAAGCACATTAATTGATTGG 59.612 33.333 21.51 11.25 0.00 3.16
354 355 7.173047 GGAAAACAAGCACATTAATTGATTGGT 59.827 33.333 21.51 16.77 0.00 3.67
355 356 8.449251 AAAACAAGCACATTAATTGATTGGTT 57.551 26.923 21.51 19.83 32.26 3.67
356 357 8.449251 AAACAAGCACATTAATTGATTGGTTT 57.551 26.923 21.51 17.50 29.07 3.27
357 358 8.449251 AACAAGCACATTAATTGATTGGTTTT 57.551 26.923 21.51 11.54 0.00 2.43
358 359 7.863666 ACAAGCACATTAATTGATTGGTTTTG 58.136 30.769 21.51 10.76 0.00 2.44
359 360 6.484818 AGCACATTAATTGATTGGTTTTGC 57.515 33.333 0.00 0.00 0.00 3.68
360 361 5.996513 AGCACATTAATTGATTGGTTTTGCA 59.003 32.000 0.00 0.00 0.00 4.08
361 362 6.485984 AGCACATTAATTGATTGGTTTTGCAA 59.514 30.769 0.00 0.00 0.00 4.08
362 363 7.013083 AGCACATTAATTGATTGGTTTTGCAAA 59.987 29.630 8.05 8.05 0.00 3.68
363 364 7.113264 GCACATTAATTGATTGGTTTTGCAAAC 59.887 33.333 12.39 7.26 0.00 2.93
364 365 8.344098 CACATTAATTGATTGGTTTTGCAAACT 58.656 29.630 12.39 0.00 0.00 2.66
365 366 9.553064 ACATTAATTGATTGGTTTTGCAAACTA 57.447 25.926 12.39 2.60 0.00 2.24
366 367 9.810231 CATTAATTGATTGGTTTTGCAAACTAC 57.190 29.630 12.39 8.46 0.00 2.73
367 368 8.948631 TTAATTGATTGGTTTTGCAAACTACA 57.051 26.923 12.39 8.40 0.00 2.74
368 369 7.856145 AATTGATTGGTTTTGCAAACTACAA 57.144 28.000 12.39 16.49 0.00 2.41
369 370 7.856145 ATTGATTGGTTTTGCAAACTACAAA 57.144 28.000 12.39 8.81 35.30 2.83
370 371 7.672983 TTGATTGGTTTTGCAAACTACAAAA 57.327 28.000 12.39 7.47 42.93 2.44
371 372 7.672983 TGATTGGTTTTGCAAACTACAAAAA 57.327 28.000 12.39 5.15 45.64 1.94
372 373 8.273780 TGATTGGTTTTGCAAACTACAAAAAT 57.726 26.923 12.39 9.35 45.64 1.82
373 374 8.734386 TGATTGGTTTTGCAAACTACAAAAATT 58.266 25.926 12.39 2.78 45.64 1.82
378 379 9.658475 GGTTTTGCAAACTACAAAAATTATTCC 57.342 29.630 12.39 0.00 45.64 3.01
381 382 7.954788 TGCAAACTACAAAAATTATTCCACC 57.045 32.000 0.00 0.00 0.00 4.61
382 383 7.500992 TGCAAACTACAAAAATTATTCCACCA 58.499 30.769 0.00 0.00 0.00 4.17
383 384 7.439655 TGCAAACTACAAAAATTATTCCACCAC 59.560 33.333 0.00 0.00 0.00 4.16
384 385 7.655732 GCAAACTACAAAAATTATTCCACCACT 59.344 33.333 0.00 0.00 0.00 4.00
385 386 9.191995 CAAACTACAAAAATTATTCCACCACTC 57.808 33.333 0.00 0.00 0.00 3.51
386 387 8.472007 AACTACAAAAATTATTCCACCACTCA 57.528 30.769 0.00 0.00 0.00 3.41
387 388 7.882179 ACTACAAAAATTATTCCACCACTCAC 58.118 34.615 0.00 0.00 0.00 3.51
388 389 6.096673 ACAAAAATTATTCCACCACTCACC 57.903 37.500 0.00 0.00 0.00 4.02
389 390 5.600484 ACAAAAATTATTCCACCACTCACCA 59.400 36.000 0.00 0.00 0.00 4.17
390 391 6.269769 ACAAAAATTATTCCACCACTCACCAT 59.730 34.615 0.00 0.00 0.00 3.55
391 392 6.530019 AAAATTATTCCACCACTCACCATC 57.470 37.500 0.00 0.00 0.00 3.51
392 393 5.456921 AATTATTCCACCACTCACCATCT 57.543 39.130 0.00 0.00 0.00 2.90
393 394 6.575244 AATTATTCCACCACTCACCATCTA 57.425 37.500 0.00 0.00 0.00 1.98
394 395 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
395 396 1.568504 TCCACCACTCACCATCTACC 58.431 55.000 0.00 0.00 0.00 3.18
396 397 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08
397 398 1.909302 CCACCACTCACCATCTACCTT 59.091 52.381 0.00 0.00 0.00 3.50
398 399 2.355108 CCACCACTCACCATCTACCTTG 60.355 54.545 0.00 0.00 0.00 3.61
399 400 1.909302 ACCACTCACCATCTACCTTGG 59.091 52.381 0.00 0.00 40.26 3.61
401 402 2.305927 CCACTCACCATCTACCTTGGTT 59.694 50.000 0.00 0.00 45.19 3.67
402 403 3.338249 CACTCACCATCTACCTTGGTTG 58.662 50.000 0.00 0.00 45.19 3.77
403 404 2.305927 ACTCACCATCTACCTTGGTTGG 59.694 50.000 7.30 7.30 45.19 3.77
404 405 2.305927 CTCACCATCTACCTTGGTTGGT 59.694 50.000 8.42 8.42 45.19 3.67
405 406 2.436417 CACCATCTACCTTGGTTGGTG 58.564 52.381 20.88 20.88 45.19 4.17
406 407 2.344592 ACCATCTACCTTGGTTGGTGA 58.655 47.619 14.37 2.56 45.19 4.02
407 408 2.305927 ACCATCTACCTTGGTTGGTGAG 59.694 50.000 14.37 8.18 45.19 3.51
408 409 2.571653 CCATCTACCTTGGTTGGTGAGA 59.428 50.000 14.37 4.26 41.05 3.27
409 410 3.200825 CCATCTACCTTGGTTGGTGAGAT 59.799 47.826 14.37 6.22 41.05 2.75
410 411 4.324563 CCATCTACCTTGGTTGGTGAGATT 60.325 45.833 14.37 0.00 41.05 2.40
411 412 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
412 413 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
413 414 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
414 415 4.670896 ACCTTGGTTGGTGAGATTTTTG 57.329 40.909 0.00 0.00 39.17 2.44
415 416 4.285863 ACCTTGGTTGGTGAGATTTTTGA 58.714 39.130 0.00 0.00 39.17 2.69
416 417 4.714308 ACCTTGGTTGGTGAGATTTTTGAA 59.286 37.500 0.00 0.00 39.17 2.69
417 418 5.366477 ACCTTGGTTGGTGAGATTTTTGAAT 59.634 36.000 0.00 0.00 39.17 2.57
418 419 6.126796 ACCTTGGTTGGTGAGATTTTTGAATT 60.127 34.615 0.00 0.00 39.17 2.17
419 420 6.203338 CCTTGGTTGGTGAGATTTTTGAATTG 59.797 38.462 0.00 0.00 0.00 2.32
420 421 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
421 422 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
422 423 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
423 424 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
424 425 4.021192 TGGTGAGATTTTTGAATTGAGCCC 60.021 41.667 0.00 0.00 0.00 5.19
425 426 4.221482 GGTGAGATTTTTGAATTGAGCCCT 59.779 41.667 0.00 0.00 0.00 5.19
426 427 5.418840 GGTGAGATTTTTGAATTGAGCCCTA 59.581 40.000 0.00 0.00 0.00 3.53
427 428 6.097412 GGTGAGATTTTTGAATTGAGCCCTAT 59.903 38.462 0.00 0.00 0.00 2.57
428 429 7.285401 GGTGAGATTTTTGAATTGAGCCCTATA 59.715 37.037 0.00 0.00 0.00 1.31
429 430 8.686334 GTGAGATTTTTGAATTGAGCCCTATAA 58.314 33.333 0.00 0.00 0.00 0.98
430 431 9.253832 TGAGATTTTTGAATTGAGCCCTATAAA 57.746 29.630 0.00 0.00 0.00 1.40
431 432 9.521503 GAGATTTTTGAATTGAGCCCTATAAAC 57.478 33.333 0.00 0.00 0.00 2.01
432 433 8.478066 AGATTTTTGAATTGAGCCCTATAAACC 58.522 33.333 0.00 0.00 0.00 3.27
433 434 5.828299 TTTGAATTGAGCCCTATAAACCG 57.172 39.130 0.00 0.00 0.00 4.44
434 435 4.764050 TGAATTGAGCCCTATAAACCGA 57.236 40.909 0.00 0.00 0.00 4.69
435 436 5.105567 TGAATTGAGCCCTATAAACCGAA 57.894 39.130 0.00 0.00 0.00 4.30
436 437 5.502079 TGAATTGAGCCCTATAAACCGAAA 58.498 37.500 0.00 0.00 0.00 3.46
437 438 5.946972 TGAATTGAGCCCTATAAACCGAAAA 59.053 36.000 0.00 0.00 0.00 2.29
438 439 6.094881 TGAATTGAGCCCTATAAACCGAAAAG 59.905 38.462 0.00 0.00 0.00 2.27
440 441 3.520317 TGAGCCCTATAAACCGAAAAGGA 59.480 43.478 0.00 0.00 45.00 3.36
441 442 4.127907 GAGCCCTATAAACCGAAAAGGAG 58.872 47.826 0.00 0.00 45.00 3.69
442 443 3.118000 AGCCCTATAAACCGAAAAGGAGG 60.118 47.826 0.00 0.00 45.00 4.30
443 444 3.816994 CCCTATAAACCGAAAAGGAGGG 58.183 50.000 0.00 0.00 45.00 4.30
444 445 3.457012 CCCTATAAACCGAAAAGGAGGGA 59.543 47.826 0.00 0.00 46.86 4.20
445 446 4.444449 CCCTATAAACCGAAAAGGAGGGAG 60.444 50.000 0.00 0.00 46.86 4.30
446 447 2.484742 TAAACCGAAAAGGAGGGAGC 57.515 50.000 0.00 0.00 45.00 4.70
453 454 1.501654 AAAAGGAGGGAGCAGGGACC 61.502 60.000 0.00 0.00 0.00 4.46
454 455 2.713111 AAAGGAGGGAGCAGGGACCA 62.713 60.000 0.00 0.00 0.00 4.02
516 536 2.440796 CCAACCGGCAGGCATGAT 60.441 61.111 0.62 0.00 42.76 2.45
520 540 1.344953 AACCGGCAGGCATGATCCTA 61.345 55.000 0.62 0.00 42.76 2.94
574 598 1.209747 AGGCCAGTCGAATTTAGGACC 59.790 52.381 5.01 0.00 33.66 4.46
669 696 3.020274 TCAAGACGGAGAATGGAGAGAG 58.980 50.000 0.00 0.00 0.00 3.20
722 749 4.402474 GTGTTTCTTTAGATGGGAATGGGG 59.598 45.833 0.00 0.00 0.00 4.96
778 816 5.909610 CAGGAGTGAGAAAAACGAAAATCAC 59.090 40.000 0.00 0.00 37.82 3.06
957 996 1.673808 CTAGTGTCGCCACCCCTACC 61.674 65.000 0.00 0.00 42.88 3.18
1223 1262 2.274760 GCCCAGGCTGCTCAAGAT 59.725 61.111 9.56 0.00 38.26 2.40
1301 1340 4.832608 CGAGCCCGGCAAGGTACC 62.833 72.222 13.15 2.73 38.74 3.34
1302 1341 3.400054 GAGCCCGGCAAGGTACCT 61.400 66.667 9.21 9.21 38.74 3.08
1303 1342 2.039951 AGCCCGGCAAGGTACCTA 59.960 61.111 16.67 0.00 38.74 3.08
1304 1343 2.188731 GCCCGGCAAGGTACCTAC 59.811 66.667 16.67 10.68 38.74 3.18
1305 1344 2.364780 GCCCGGCAAGGTACCTACT 61.365 63.158 16.67 0.00 38.74 2.57
1306 1345 1.821258 CCCGGCAAGGTACCTACTC 59.179 63.158 16.67 7.13 38.74 2.59
1307 1346 0.686769 CCCGGCAAGGTACCTACTCT 60.687 60.000 16.67 0.00 38.74 3.24
1308 1347 1.410648 CCCGGCAAGGTACCTACTCTA 60.411 57.143 16.67 0.00 38.74 2.43
1309 1348 1.680207 CCGGCAAGGTACCTACTCTAC 59.320 57.143 16.67 2.00 34.51 2.59
1737 1822 1.898574 CGGTTGCAAGAGCCTGGTT 60.899 57.895 0.00 0.00 41.13 3.67
1760 1845 3.587923 GTGTATGTGCATTTGTGCCAAT 58.412 40.909 0.00 0.00 0.00 3.16
1821 1906 6.484643 CAGAGAGAAATGGAGAAGTTTGTGAA 59.515 38.462 0.00 0.00 0.00 3.18
1963 2048 6.039829 TGTTTATTGCATGCCCGTGATTATAA 59.960 34.615 16.68 0.00 0.00 0.98
2351 2436 3.429547 CCAGAGTGTATTCCCTTGTCTCG 60.430 52.174 0.00 0.00 0.00 4.04
2659 2746 2.647299 ACCATACTGAACATGTGGGGAA 59.353 45.455 0.00 0.00 34.27 3.97
3298 3387 0.967380 CCTGGTTCCATCTGTTGCCC 60.967 60.000 0.00 0.00 0.00 5.36
3305 3394 1.434696 CATCTGTTGCCCCGATTGC 59.565 57.895 0.00 0.00 0.00 3.56
3480 3569 2.910688 TCATTCGAGCTATTGGGTCC 57.089 50.000 0.00 0.00 39.08 4.46
3556 3645 4.985413 AGATGTTTTGTGTGACAGTGTTG 58.015 39.130 0.00 0.00 0.00 3.33
3692 3781 1.477685 GGGGAGGACGGAACTGTGAA 61.478 60.000 0.00 0.00 0.00 3.18
3914 4003 7.770433 TCAACATAGTGAAAGGTCATTCCATAG 59.230 37.037 0.00 0.00 39.02 2.23
3962 4051 1.198713 TGGGAGATGTTCTCAGAGGC 58.801 55.000 6.83 0.00 45.12 4.70
4290 4379 4.987408 TGGTAGCATTTGTCAATGATGG 57.013 40.909 0.00 0.00 42.35 3.51
4563 4652 1.826024 CTGGCTAGCTAGGTGGTGG 59.174 63.158 22.10 0.00 0.00 4.61
4564 4653 0.978146 CTGGCTAGCTAGGTGGTGGT 60.978 60.000 22.10 0.00 0.00 4.16
4565 4654 0.976073 TGGCTAGCTAGGTGGTGGTC 60.976 60.000 22.10 2.72 0.00 4.02
4566 4655 0.976073 GGCTAGCTAGGTGGTGGTCA 60.976 60.000 22.10 0.00 0.00 4.02
4751 4840 1.133482 GCTGGGGCCATAAGGTACATT 60.133 52.381 4.39 0.00 37.19 2.71
4752 4841 2.107552 GCTGGGGCCATAAGGTACATTA 59.892 50.000 4.39 1.96 37.19 1.90
4753 4842 3.245264 GCTGGGGCCATAAGGTACATTAT 60.245 47.826 4.39 6.95 37.19 1.28
4754 4843 4.018779 GCTGGGGCCATAAGGTACATTATA 60.019 45.833 12.13 0.00 37.19 0.98
4755 4844 5.340027 GCTGGGGCCATAAGGTACATTATAT 60.340 44.000 12.13 0.00 37.19 0.86
4803 4894 3.118956 AGGATACACTTTCGCTCCTCAAG 60.119 47.826 0.00 0.00 41.41 3.02
4878 4969 0.039618 GCCAAATTGGAGGGTGAGGA 59.960 55.000 17.47 0.00 40.96 3.71
4964 5055 2.612221 GCTGTCACCTGGTACAAGGTAC 60.612 54.545 22.04 18.51 37.67 3.34
4965 5056 1.614903 TGTCACCTGGTACAAGGTACG 59.385 52.381 22.04 10.87 37.67 3.67
4966 5057 1.615392 GTCACCTGGTACAAGGTACGT 59.385 52.381 22.04 0.00 37.67 3.57
4967 5058 2.819608 GTCACCTGGTACAAGGTACGTA 59.180 50.000 22.04 5.33 37.67 3.57
5009 5101 7.289549 AGGATCATCATACATTCAGTCTCTTCA 59.710 37.037 0.00 0.00 0.00 3.02
5010 5102 7.930325 GGATCATCATACATTCAGTCTCTTCAA 59.070 37.037 0.00 0.00 0.00 2.69
5011 5103 9.491675 GATCATCATACATTCAGTCTCTTCAAT 57.508 33.333 0.00 0.00 0.00 2.57
5129 5221 2.113860 TGACTTCTATGTGCAAGGGC 57.886 50.000 0.00 0.00 41.68 5.19
5844 5941 7.038799 AGCTTATCCTGGATCACATTTTGTTTT 60.039 33.333 13.54 0.00 0.00 2.43
6089 6186 2.041251 TCCCGTTTGGTTTCGAACTT 57.959 45.000 0.00 0.00 35.60 2.66
6131 6228 5.063438 GTCGCTTGTTGTGATTATAGCTTCA 59.937 40.000 0.00 0.00 37.53 3.02
6137 6234 8.791327 TTGTTGTGATTATAGCTTCATTGAGA 57.209 30.769 0.00 0.00 0.00 3.27
6200 6297 0.537143 TGAATGAAACTGCTGGGCGT 60.537 50.000 0.00 0.00 0.00 5.68
6448 6545 3.425359 CCTTCTGCTGCTTGATTTGTACG 60.425 47.826 0.00 0.00 0.00 3.67
6450 6547 3.920446 TCTGCTGCTTGATTTGTACGTA 58.080 40.909 0.00 0.00 0.00 3.57
6451 6548 3.678072 TCTGCTGCTTGATTTGTACGTAC 59.322 43.478 18.90 18.90 0.00 3.67
6452 6549 3.394719 TGCTGCTTGATTTGTACGTACA 58.605 40.909 24.10 24.10 0.00 2.90
6453 6550 4.000325 TGCTGCTTGATTTGTACGTACAT 59.000 39.130 27.82 15.13 35.89 2.29
6454 6551 4.092821 TGCTGCTTGATTTGTACGTACATC 59.907 41.667 27.82 22.50 35.89 3.06
6455 6552 4.330074 GCTGCTTGATTTGTACGTACATCT 59.670 41.667 27.82 18.01 35.89 2.90
6456 6553 5.500931 GCTGCTTGATTTGTACGTACATCTC 60.501 44.000 27.82 24.32 35.89 2.75
6457 6554 5.474825 TGCTTGATTTGTACGTACATCTCA 58.525 37.500 27.82 26.23 35.89 3.27
6458 6555 6.106003 TGCTTGATTTGTACGTACATCTCAT 58.894 36.000 27.82 17.09 35.89 2.90
6459 6556 6.255670 TGCTTGATTTGTACGTACATCTCATC 59.744 38.462 27.82 23.13 35.89 2.92
6460 6557 6.477033 GCTTGATTTGTACGTACATCTCATCT 59.523 38.462 27.82 8.66 35.89 2.90
6461 6558 7.010552 GCTTGATTTGTACGTACATCTCATCTT 59.989 37.037 27.82 7.84 35.89 2.40
6462 6559 7.755582 TGATTTGTACGTACATCTCATCTTG 57.244 36.000 27.82 0.00 35.89 3.02
6463 6560 7.543756 TGATTTGTACGTACATCTCATCTTGA 58.456 34.615 27.82 7.25 35.89 3.02
6464 6561 7.488150 TGATTTGTACGTACATCTCATCTTGAC 59.512 37.037 27.82 10.15 35.89 3.18
6465 6562 5.890424 TGTACGTACATCTCATCTTGACA 57.110 39.130 24.10 0.00 0.00 3.58
6466 6563 6.262193 TGTACGTACATCTCATCTTGACAA 57.738 37.500 24.10 0.00 0.00 3.18
6467 6564 6.322491 TGTACGTACATCTCATCTTGACAAG 58.678 40.000 24.10 9.03 0.00 3.16
6468 6565 5.644977 ACGTACATCTCATCTTGACAAGA 57.355 39.130 19.85 19.85 42.69 3.02
6469 6566 5.645624 ACGTACATCTCATCTTGACAAGAG 58.354 41.667 21.78 14.07 41.61 2.85
6711 6818 6.713762 ACAACAAGAGATTCAAACATGGAA 57.286 33.333 0.00 0.00 0.00 3.53
6965 7074 5.374921 AGATTCTAGAACTCCCATTGCATG 58.625 41.667 7.48 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.160626 AGACTTTTCAGGTCTATTCTCGGG 59.839 45.833 0.00 0.00 41.56 5.14
3 4 5.126384 AGAGACTTTTCAGGTCTATTCTCGG 59.874 44.000 0.00 0.00 43.13 4.63
4 5 6.033341 CAGAGACTTTTCAGGTCTATTCTCG 58.967 44.000 0.00 0.00 43.13 4.04
5 6 7.122055 TCTCAGAGACTTTTCAGGTCTATTCTC 59.878 40.741 0.00 0.00 43.13 2.87
6 7 6.951198 TCTCAGAGACTTTTCAGGTCTATTCT 59.049 38.462 0.00 0.00 43.13 2.40
8 9 6.071051 GGTCTCAGAGACTTTTCAGGTCTATT 60.071 42.308 26.51 0.00 44.46 1.73
9 10 5.420739 GGTCTCAGAGACTTTTCAGGTCTAT 59.579 44.000 26.51 0.00 44.46 1.98
10 11 4.767928 GGTCTCAGAGACTTTTCAGGTCTA 59.232 45.833 26.51 0.00 44.46 2.59
14 15 4.550076 ATGGTCTCAGAGACTTTTCAGG 57.450 45.455 26.51 0.00 44.46 3.86
15 16 6.279513 AGTATGGTCTCAGAGACTTTTCAG 57.720 41.667 26.51 0.00 44.46 3.02
16 17 7.776618 TTAGTATGGTCTCAGAGACTTTTCA 57.223 36.000 26.51 17.50 44.46 2.69
17 18 8.524487 TCTTTAGTATGGTCTCAGAGACTTTTC 58.476 37.037 26.51 15.93 44.46 2.29
18 19 8.423906 TCTTTAGTATGGTCTCAGAGACTTTT 57.576 34.615 26.51 15.35 44.46 2.27
19 20 8.423906 TTCTTTAGTATGGTCTCAGAGACTTT 57.576 34.615 26.51 17.46 44.46 2.66
20 21 8.308207 GTTTCTTTAGTATGGTCTCAGAGACTT 58.692 37.037 26.51 17.76 44.46 3.01
21 22 7.093684 GGTTTCTTTAGTATGGTCTCAGAGACT 60.094 40.741 26.51 13.01 44.46 3.24
22 23 7.036829 GGTTTCTTTAGTATGGTCTCAGAGAC 58.963 42.308 20.95 20.95 44.32 3.36
23 24 6.154706 GGGTTTCTTTAGTATGGTCTCAGAGA 59.845 42.308 0.00 0.00 0.00 3.10
24 25 6.155393 AGGGTTTCTTTAGTATGGTCTCAGAG 59.845 42.308 0.00 0.00 0.00 3.35
25 26 6.023603 AGGGTTTCTTTAGTATGGTCTCAGA 58.976 40.000 0.00 0.00 0.00 3.27
26 27 6.070767 TGAGGGTTTCTTTAGTATGGTCTCAG 60.071 42.308 0.00 0.00 0.00 3.35
27 28 5.783360 TGAGGGTTTCTTTAGTATGGTCTCA 59.217 40.000 0.00 0.00 0.00 3.27
28 29 6.295719 TGAGGGTTTCTTTAGTATGGTCTC 57.704 41.667 0.00 0.00 0.00 3.36
29 30 6.893020 ATGAGGGTTTCTTTAGTATGGTCT 57.107 37.500 0.00 0.00 0.00 3.85
30 31 9.057089 CATAATGAGGGTTTCTTTAGTATGGTC 57.943 37.037 0.00 0.00 31.34 4.02
31 32 7.998964 CCATAATGAGGGTTTCTTTAGTATGGT 59.001 37.037 0.00 0.00 36.90 3.55
32 33 7.998964 ACCATAATGAGGGTTTCTTTAGTATGG 59.001 37.037 0.00 0.00 35.82 2.74
33 34 8.980481 ACCATAATGAGGGTTTCTTTAGTATG 57.020 34.615 0.00 0.00 35.82 2.39
45 46 5.010282 GTGTCAAGAAACCATAATGAGGGT 58.990 41.667 0.00 0.00 43.15 4.34
46 47 5.009631 TGTGTCAAGAAACCATAATGAGGG 58.990 41.667 0.00 0.00 0.00 4.30
47 48 5.392380 GCTGTGTCAAGAAACCATAATGAGG 60.392 44.000 0.00 0.00 0.00 3.86
48 49 5.634896 GCTGTGTCAAGAAACCATAATGAG 58.365 41.667 0.00 0.00 0.00 2.90
49 50 4.154015 CGCTGTGTCAAGAAACCATAATGA 59.846 41.667 0.00 0.00 0.00 2.57
50 51 4.083324 ACGCTGTGTCAAGAAACCATAATG 60.083 41.667 0.00 0.00 0.00 1.90
51 52 4.072131 ACGCTGTGTCAAGAAACCATAAT 58.928 39.130 0.00 0.00 0.00 1.28
52 53 3.472652 ACGCTGTGTCAAGAAACCATAA 58.527 40.909 0.00 0.00 0.00 1.90
53 54 3.120321 ACGCTGTGTCAAGAAACCATA 57.880 42.857 0.00 0.00 0.00 2.74
54 55 1.967319 ACGCTGTGTCAAGAAACCAT 58.033 45.000 0.00 0.00 0.00 3.55
55 56 3.469564 ACGCTGTGTCAAGAAACCA 57.530 47.368 0.00 0.00 0.00 3.67
64 65 1.397343 TAGAGTCGATGACGCTGTGTC 59.603 52.381 14.19 14.19 42.23 3.67
65 66 1.450025 TAGAGTCGATGACGCTGTGT 58.550 50.000 12.53 0.00 42.23 3.72
66 67 2.544480 TTAGAGTCGATGACGCTGTG 57.456 50.000 12.53 0.00 42.23 3.66
67 68 2.946329 AGATTAGAGTCGATGACGCTGT 59.054 45.455 12.53 2.59 42.23 4.40
68 69 3.617540 AGATTAGAGTCGATGACGCTG 57.382 47.619 12.53 0.00 42.23 5.18
69 70 3.243234 CCAAGATTAGAGTCGATGACGCT 60.243 47.826 8.23 8.23 44.24 5.07
70 71 3.046390 CCAAGATTAGAGTCGATGACGC 58.954 50.000 0.00 0.00 37.67 5.19
71 72 3.046390 GCCAAGATTAGAGTCGATGACG 58.954 50.000 0.00 0.00 37.67 4.35
72 73 4.314740 AGCCAAGATTAGAGTCGATGAC 57.685 45.455 0.00 0.00 0.00 3.06
73 74 4.887655 TGTAGCCAAGATTAGAGTCGATGA 59.112 41.667 0.00 0.00 0.00 2.92
74 75 4.979197 GTGTAGCCAAGATTAGAGTCGATG 59.021 45.833 0.00 0.00 0.00 3.84
75 76 4.038162 GGTGTAGCCAAGATTAGAGTCGAT 59.962 45.833 0.00 0.00 37.17 3.59
76 77 3.380637 GGTGTAGCCAAGATTAGAGTCGA 59.619 47.826 0.00 0.00 37.17 4.20
77 78 3.130516 TGGTGTAGCCAAGATTAGAGTCG 59.869 47.826 0.00 0.00 45.94 4.18
78 79 4.737855 TGGTGTAGCCAAGATTAGAGTC 57.262 45.455 0.00 0.00 45.94 3.36
89 90 1.369692 CCGTGTTCTGGTGTAGCCA 59.630 57.895 0.00 0.00 46.95 4.75
90 91 1.370064 ACCGTGTTCTGGTGTAGCC 59.630 57.895 0.00 0.00 38.60 3.93
96 97 3.566210 CCCCCACCGTGTTCTGGT 61.566 66.667 0.00 0.00 41.47 4.00
97 98 3.246112 TCCCCCACCGTGTTCTGG 61.246 66.667 0.00 0.00 0.00 3.86
98 99 1.764571 TTCTCCCCCACCGTGTTCTG 61.765 60.000 0.00 0.00 0.00 3.02
99 100 1.460689 TTCTCCCCCACCGTGTTCT 60.461 57.895 0.00 0.00 0.00 3.01
100 101 1.003718 CTTCTCCCCCACCGTGTTC 60.004 63.158 0.00 0.00 0.00 3.18
101 102 1.460689 TCTTCTCCCCCACCGTGTT 60.461 57.895 0.00 0.00 0.00 3.32
102 103 2.203182 TCTTCTCCCCCACCGTGT 59.797 61.111 0.00 0.00 0.00 4.49
103 104 2.663196 GTCTTCTCCCCCACCGTG 59.337 66.667 0.00 0.00 0.00 4.94
104 105 1.807771 TAGGTCTTCTCCCCCACCGT 61.808 60.000 0.00 0.00 33.78 4.83
105 106 1.001248 TAGGTCTTCTCCCCCACCG 59.999 63.158 0.00 0.00 33.78 4.94
106 107 0.042881 AGTAGGTCTTCTCCCCCACC 59.957 60.000 0.00 0.00 0.00 4.61
107 108 1.487300 GAGTAGGTCTTCTCCCCCAC 58.513 60.000 0.00 0.00 0.00 4.61
108 109 0.338814 GGAGTAGGTCTTCTCCCCCA 59.661 60.000 11.23 0.00 42.96 4.96
109 110 3.227273 GGAGTAGGTCTTCTCCCCC 57.773 63.158 11.23 0.00 42.96 5.40
112 113 1.571936 AGGAGGGAGTAGGTCTTCTCC 59.428 57.143 13.24 13.24 46.62 3.71
113 114 3.391799 AAGGAGGGAGTAGGTCTTCTC 57.608 52.381 0.00 0.00 0.00 2.87
114 115 3.856747 AAAGGAGGGAGTAGGTCTTCT 57.143 47.619 0.00 0.00 0.00 2.85
115 116 3.119065 CGAAAAGGAGGGAGTAGGTCTTC 60.119 52.174 0.00 0.00 0.00 2.87
116 117 2.832733 CGAAAAGGAGGGAGTAGGTCTT 59.167 50.000 0.00 0.00 0.00 3.01
117 118 2.458620 CGAAAAGGAGGGAGTAGGTCT 58.541 52.381 0.00 0.00 0.00 3.85
118 119 1.481363 CCGAAAAGGAGGGAGTAGGTC 59.519 57.143 0.00 0.00 45.00 3.85
119 120 1.203275 ACCGAAAAGGAGGGAGTAGGT 60.203 52.381 0.00 0.00 45.00 3.08
120 121 1.569653 ACCGAAAAGGAGGGAGTAGG 58.430 55.000 0.00 0.00 45.00 3.18
121 122 3.697619 AAACCGAAAAGGAGGGAGTAG 57.302 47.619 0.00 0.00 45.00 2.57
122 123 6.126968 CCTTATAAACCGAAAAGGAGGGAGTA 60.127 42.308 0.00 0.00 45.00 2.59
123 124 5.338953 CCTTATAAACCGAAAAGGAGGGAGT 60.339 44.000 0.00 0.00 45.00 3.85
124 125 5.123936 CCTTATAAACCGAAAAGGAGGGAG 58.876 45.833 0.00 0.00 45.00 4.30
125 126 4.627013 GCCTTATAAACCGAAAAGGAGGGA 60.627 45.833 4.19 0.00 45.00 4.20
126 127 3.630769 GCCTTATAAACCGAAAAGGAGGG 59.369 47.826 4.19 0.00 45.00 4.30
127 128 4.524053 AGCCTTATAAACCGAAAAGGAGG 58.476 43.478 4.19 0.00 45.00 4.30
128 129 7.715686 AGATAAGCCTTATAAACCGAAAAGGAG 59.284 37.037 0.00 0.00 45.00 3.69
129 130 7.571025 AGATAAGCCTTATAAACCGAAAAGGA 58.429 34.615 0.00 0.00 45.00 3.36
168 169 9.849166 CCAAATTAAGCCTTATAAAACGAGAAA 57.151 29.630 0.00 0.00 0.00 2.52
169 170 9.016438 ACCAAATTAAGCCTTATAAAACGAGAA 57.984 29.630 0.00 0.00 0.00 2.87
170 171 8.570068 ACCAAATTAAGCCTTATAAAACGAGA 57.430 30.769 0.00 0.00 0.00 4.04
171 172 9.072294 CAACCAAATTAAGCCTTATAAAACGAG 57.928 33.333 0.00 0.00 0.00 4.18
172 173 8.578151 ACAACCAAATTAAGCCTTATAAAACGA 58.422 29.630 0.00 0.00 0.00 3.85
173 174 8.751302 ACAACCAAATTAAGCCTTATAAAACG 57.249 30.769 0.00 0.00 0.00 3.60
176 177 9.713713 GGAAACAACCAAATTAAGCCTTATAAA 57.286 29.630 0.00 0.00 0.00 1.40
177 178 8.315482 GGGAAACAACCAAATTAAGCCTTATAA 58.685 33.333 0.00 0.00 0.00 0.98
178 179 7.455008 TGGGAAACAACCAAATTAAGCCTTATA 59.545 33.333 0.00 0.00 34.44 0.98
179 180 6.271159 TGGGAAACAACCAAATTAAGCCTTAT 59.729 34.615 0.00 0.00 34.44 1.73
180 181 5.602978 TGGGAAACAACCAAATTAAGCCTTA 59.397 36.000 0.00 0.00 34.44 2.69
181 182 4.410555 TGGGAAACAACCAAATTAAGCCTT 59.589 37.500 0.00 0.00 34.44 4.35
182 183 3.970640 TGGGAAACAACCAAATTAAGCCT 59.029 39.130 0.00 0.00 34.44 4.58
183 184 4.344359 TGGGAAACAACCAAATTAAGCC 57.656 40.909 0.00 0.00 34.44 4.35
184 185 5.408299 GTGATGGGAAACAACCAAATTAAGC 59.592 40.000 0.00 0.00 42.17 3.09
185 186 6.520272 TGTGATGGGAAACAACCAAATTAAG 58.480 36.000 0.00 0.00 42.17 1.85
186 187 6.485830 TGTGATGGGAAACAACCAAATTAA 57.514 33.333 0.00 0.00 42.17 1.40
187 188 6.042552 ACATGTGATGGGAAACAACCAAATTA 59.957 34.615 0.00 0.00 42.17 1.40
188 189 5.163216 ACATGTGATGGGAAACAACCAAATT 60.163 36.000 0.00 0.00 42.17 1.82
189 190 4.347583 ACATGTGATGGGAAACAACCAAAT 59.652 37.500 0.00 0.00 42.17 2.32
190 191 3.708631 ACATGTGATGGGAAACAACCAAA 59.291 39.130 0.00 0.00 42.17 3.28
191 192 3.303938 ACATGTGATGGGAAACAACCAA 58.696 40.909 0.00 0.00 42.17 3.67
192 193 2.956132 ACATGTGATGGGAAACAACCA 58.044 42.857 0.00 0.00 43.22 3.67
193 194 3.320541 TGAACATGTGATGGGAAACAACC 59.679 43.478 0.00 0.00 33.60 3.77
194 195 4.278170 TCTGAACATGTGATGGGAAACAAC 59.722 41.667 0.00 0.00 33.60 3.32
195 196 4.468713 TCTGAACATGTGATGGGAAACAA 58.531 39.130 0.00 0.00 33.60 2.83
196 197 4.097551 TCTGAACATGTGATGGGAAACA 57.902 40.909 0.00 0.00 33.60 2.83
197 198 5.649782 AATCTGAACATGTGATGGGAAAC 57.350 39.130 0.00 0.00 33.60 2.78
198 199 6.669125 AAAATCTGAACATGTGATGGGAAA 57.331 33.333 0.00 0.00 33.60 3.13
199 200 7.093814 CCTTAAAATCTGAACATGTGATGGGAA 60.094 37.037 0.00 0.00 33.60 3.97
200 201 6.377996 CCTTAAAATCTGAACATGTGATGGGA 59.622 38.462 0.00 0.00 33.60 4.37
201 202 6.153340 ACCTTAAAATCTGAACATGTGATGGG 59.847 38.462 0.00 0.45 33.60 4.00
202 203 7.031372 CACCTTAAAATCTGAACATGTGATGG 58.969 38.462 0.00 0.00 33.60 3.51
203 204 6.529125 GCACCTTAAAATCTGAACATGTGATG 59.471 38.462 0.00 0.00 0.00 3.07
204 205 6.209192 TGCACCTTAAAATCTGAACATGTGAT 59.791 34.615 0.00 0.00 0.00 3.06
205 206 5.534278 TGCACCTTAAAATCTGAACATGTGA 59.466 36.000 0.00 0.00 0.00 3.58
206 207 5.771469 TGCACCTTAAAATCTGAACATGTG 58.229 37.500 0.00 0.00 0.00 3.21
207 208 6.594788 ATGCACCTTAAAATCTGAACATGT 57.405 33.333 0.00 0.00 0.00 3.21
208 209 8.984891 TTAATGCACCTTAAAATCTGAACATG 57.015 30.769 0.00 0.00 0.00 3.21
210 211 9.638239 GATTTAATGCACCTTAAAATCTGAACA 57.362 29.630 8.82 0.00 35.02 3.18
211 212 9.638239 TGATTTAATGCACCTTAAAATCTGAAC 57.362 29.630 8.82 0.00 35.02 3.18
215 216 9.101655 GCAATGATTTAATGCACCTTAAAATCT 57.898 29.630 8.82 0.00 39.81 2.40
216 217 8.881743 TGCAATGATTTAATGCACCTTAAAATC 58.118 29.630 8.82 10.22 44.52 2.17
217 218 8.789825 TGCAATGATTTAATGCACCTTAAAAT 57.210 26.923 8.82 2.32 44.52 1.82
256 257 3.598299 AGCGCATGCATTGGTTATTTTT 58.402 36.364 19.57 0.00 46.23 1.94
257 258 3.249986 AGCGCATGCATTGGTTATTTT 57.750 38.095 19.57 0.00 46.23 1.82
258 259 2.965572 AGCGCATGCATTGGTTATTT 57.034 40.000 19.57 0.00 46.23 1.40
259 260 2.931325 CAAAGCGCATGCATTGGTTATT 59.069 40.909 19.57 0.00 44.00 1.40
260 261 2.542597 CAAAGCGCATGCATTGGTTAT 58.457 42.857 19.57 2.40 44.00 1.89
261 262 1.993542 CAAAGCGCATGCATTGGTTA 58.006 45.000 19.57 0.00 44.00 2.85
262 263 2.830264 CAAAGCGCATGCATTGGTT 58.170 47.368 19.57 10.51 44.00 3.67
263 264 4.582760 CAAAGCGCATGCATTGGT 57.417 50.000 19.57 4.03 44.00 3.67
266 267 3.864944 GCACAAAGCGCATGCATT 58.135 50.000 19.57 8.99 46.23 3.56
322 323 7.713764 ATTAATGTGCTTGTTTTCCTCAAAC 57.286 32.000 0.00 0.00 44.64 2.93
323 324 7.984050 TCAATTAATGTGCTTGTTTTCCTCAAA 59.016 29.630 0.00 0.00 0.00 2.69
324 325 7.495901 TCAATTAATGTGCTTGTTTTCCTCAA 58.504 30.769 0.00 0.00 0.00 3.02
325 326 7.048629 TCAATTAATGTGCTTGTTTTCCTCA 57.951 32.000 0.00 0.00 0.00 3.86
326 327 8.437742 CAATCAATTAATGTGCTTGTTTTCCTC 58.562 33.333 0.00 0.00 0.00 3.71
327 328 7.388500 CCAATCAATTAATGTGCTTGTTTTCCT 59.612 33.333 0.00 0.00 0.00 3.36
328 329 7.173047 ACCAATCAATTAATGTGCTTGTTTTCC 59.827 33.333 0.00 0.00 0.00 3.13
329 330 8.086851 ACCAATCAATTAATGTGCTTGTTTTC 57.913 30.769 0.00 0.00 0.00 2.29
330 331 8.449251 AACCAATCAATTAATGTGCTTGTTTT 57.551 26.923 0.00 0.00 0.00 2.43
331 332 8.449251 AAACCAATCAATTAATGTGCTTGTTT 57.551 26.923 0.00 0.00 0.00 2.83
332 333 8.344098 CAAAACCAATCAATTAATGTGCTTGTT 58.656 29.630 0.00 0.00 0.00 2.83
333 334 7.520292 GCAAAACCAATCAATTAATGTGCTTGT 60.520 33.333 0.00 0.00 0.00 3.16
334 335 6.797995 GCAAAACCAATCAATTAATGTGCTTG 59.202 34.615 0.00 0.00 0.00 4.01
335 336 6.485984 TGCAAAACCAATCAATTAATGTGCTT 59.514 30.769 0.00 0.00 0.00 3.91
336 337 5.996513 TGCAAAACCAATCAATTAATGTGCT 59.003 32.000 0.00 0.00 0.00 4.40
337 338 6.238610 TGCAAAACCAATCAATTAATGTGC 57.761 33.333 0.00 0.00 0.00 4.57
338 339 8.344098 AGTTTGCAAAACCAATCAATTAATGTG 58.656 29.630 14.67 0.00 0.00 3.21
339 340 8.449251 AGTTTGCAAAACCAATCAATTAATGT 57.551 26.923 14.67 0.00 0.00 2.71
340 341 9.810231 GTAGTTTGCAAAACCAATCAATTAATG 57.190 29.630 14.67 0.00 0.00 1.90
341 342 9.553064 TGTAGTTTGCAAAACCAATCAATTAAT 57.447 25.926 14.67 0.00 0.00 1.40
342 343 8.948631 TGTAGTTTGCAAAACCAATCAATTAA 57.051 26.923 14.67 0.00 0.00 1.40
343 344 8.948631 TTGTAGTTTGCAAAACCAATCAATTA 57.051 26.923 14.67 0.00 0.00 1.40
344 345 7.856145 TTGTAGTTTGCAAAACCAATCAATT 57.144 28.000 14.67 0.00 0.00 2.32
345 346 7.856145 TTTGTAGTTTGCAAAACCAATCAAT 57.144 28.000 14.67 0.00 33.51 2.57
346 347 7.672983 TTTTGTAGTTTGCAAAACCAATCAA 57.327 28.000 14.67 10.56 39.83 2.57
347 348 7.672983 TTTTTGTAGTTTGCAAAACCAATCA 57.327 28.000 14.67 5.21 42.99 2.57
352 353 9.658475 GGAATAATTTTTGTAGTTTGCAAAACC 57.342 29.630 14.67 2.18 42.99 3.27
355 356 8.831550 GGTGGAATAATTTTTGTAGTTTGCAAA 58.168 29.630 8.05 8.05 34.47 3.68
356 357 7.987458 TGGTGGAATAATTTTTGTAGTTTGCAA 59.013 29.630 0.00 0.00 0.00 4.08
357 358 7.439655 GTGGTGGAATAATTTTTGTAGTTTGCA 59.560 33.333 0.00 0.00 0.00 4.08
358 359 7.655732 AGTGGTGGAATAATTTTTGTAGTTTGC 59.344 33.333 0.00 0.00 0.00 3.68
359 360 9.191995 GAGTGGTGGAATAATTTTTGTAGTTTG 57.808 33.333 0.00 0.00 0.00 2.93
360 361 8.919145 TGAGTGGTGGAATAATTTTTGTAGTTT 58.081 29.630 0.00 0.00 0.00 2.66
361 362 8.357402 GTGAGTGGTGGAATAATTTTTGTAGTT 58.643 33.333 0.00 0.00 0.00 2.24
362 363 7.039993 GGTGAGTGGTGGAATAATTTTTGTAGT 60.040 37.037 0.00 0.00 0.00 2.73
363 364 7.040062 TGGTGAGTGGTGGAATAATTTTTGTAG 60.040 37.037 0.00 0.00 0.00 2.74
364 365 6.778069 TGGTGAGTGGTGGAATAATTTTTGTA 59.222 34.615 0.00 0.00 0.00 2.41
365 366 5.600484 TGGTGAGTGGTGGAATAATTTTTGT 59.400 36.000 0.00 0.00 0.00 2.83
366 367 6.095432 TGGTGAGTGGTGGAATAATTTTTG 57.905 37.500 0.00 0.00 0.00 2.44
367 368 6.725834 AGATGGTGAGTGGTGGAATAATTTTT 59.274 34.615 0.00 0.00 0.00 1.94
368 369 6.256053 AGATGGTGAGTGGTGGAATAATTTT 58.744 36.000 0.00 0.00 0.00 1.82
369 370 5.831103 AGATGGTGAGTGGTGGAATAATTT 58.169 37.500 0.00 0.00 0.00 1.82
370 371 5.456921 AGATGGTGAGTGGTGGAATAATT 57.543 39.130 0.00 0.00 0.00 1.40
371 372 5.163195 GGTAGATGGTGAGTGGTGGAATAAT 60.163 44.000 0.00 0.00 0.00 1.28
372 373 4.163458 GGTAGATGGTGAGTGGTGGAATAA 59.837 45.833 0.00 0.00 0.00 1.40
373 374 3.709653 GGTAGATGGTGAGTGGTGGAATA 59.290 47.826 0.00 0.00 0.00 1.75
374 375 2.505819 GGTAGATGGTGAGTGGTGGAAT 59.494 50.000 0.00 0.00 0.00 3.01
375 376 1.906574 GGTAGATGGTGAGTGGTGGAA 59.093 52.381 0.00 0.00 0.00 3.53
376 377 1.078823 AGGTAGATGGTGAGTGGTGGA 59.921 52.381 0.00 0.00 0.00 4.02
377 378 1.573108 AGGTAGATGGTGAGTGGTGG 58.427 55.000 0.00 0.00 0.00 4.61
378 379 2.355108 CCAAGGTAGATGGTGAGTGGTG 60.355 54.545 0.00 0.00 33.08 4.17
379 380 1.909302 CCAAGGTAGATGGTGAGTGGT 59.091 52.381 0.00 0.00 33.08 4.16
380 381 2.698855 CCAAGGTAGATGGTGAGTGG 57.301 55.000 0.00 0.00 33.08 4.00
387 388 2.571653 TCTCACCAACCAAGGTAGATGG 59.428 50.000 6.86 6.86 40.77 3.51
388 389 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
389 390 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
390 391 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
391 392 5.534654 TCAAAAATCTCACCAACCAAGGTAG 59.465 40.000 0.00 0.00 40.77 3.18
392 393 5.450453 TCAAAAATCTCACCAACCAAGGTA 58.550 37.500 0.00 0.00 40.77 3.08
393 394 4.285863 TCAAAAATCTCACCAACCAAGGT 58.714 39.130 0.00 0.00 44.48 3.50
394 395 4.935352 TCAAAAATCTCACCAACCAAGG 57.065 40.909 0.00 0.00 0.00 3.61
395 396 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
396 397 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
397 398 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
398 399 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
399 400 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
400 401 5.511202 GGGCTCAATTCAAAAATCTCACCAA 60.511 40.000 0.00 0.00 0.00 3.67
401 402 4.021192 GGGCTCAATTCAAAAATCTCACCA 60.021 41.667 0.00 0.00 0.00 4.17
402 403 4.221482 AGGGCTCAATTCAAAAATCTCACC 59.779 41.667 0.00 0.00 0.00 4.02
403 404 5.397142 AGGGCTCAATTCAAAAATCTCAC 57.603 39.130 0.00 0.00 0.00 3.51
404 405 8.821686 TTATAGGGCTCAATTCAAAAATCTCA 57.178 30.769 0.00 0.00 0.00 3.27
405 406 9.521503 GTTTATAGGGCTCAATTCAAAAATCTC 57.478 33.333 0.00 0.00 0.00 2.75
406 407 8.478066 GGTTTATAGGGCTCAATTCAAAAATCT 58.522 33.333 0.00 0.00 0.00 2.40
407 408 7.435192 CGGTTTATAGGGCTCAATTCAAAAATC 59.565 37.037 0.00 0.00 0.00 2.17
408 409 7.123547 TCGGTTTATAGGGCTCAATTCAAAAAT 59.876 33.333 0.00 0.00 0.00 1.82
409 410 6.434652 TCGGTTTATAGGGCTCAATTCAAAAA 59.565 34.615 0.00 0.00 0.00 1.94
410 411 5.946972 TCGGTTTATAGGGCTCAATTCAAAA 59.053 36.000 0.00 0.00 0.00 2.44
411 412 5.502079 TCGGTTTATAGGGCTCAATTCAAA 58.498 37.500 0.00 0.00 0.00 2.69
412 413 5.105567 TCGGTTTATAGGGCTCAATTCAA 57.894 39.130 0.00 0.00 0.00 2.69
413 414 4.764050 TCGGTTTATAGGGCTCAATTCA 57.236 40.909 0.00 0.00 0.00 2.57
414 415 6.445357 TTTTCGGTTTATAGGGCTCAATTC 57.555 37.500 0.00 0.00 0.00 2.17
415 416 5.359860 CCTTTTCGGTTTATAGGGCTCAATT 59.640 40.000 0.00 0.00 0.00 2.32
416 417 4.887655 CCTTTTCGGTTTATAGGGCTCAAT 59.112 41.667 0.00 0.00 0.00 2.57
417 418 4.019141 TCCTTTTCGGTTTATAGGGCTCAA 60.019 41.667 0.00 0.00 0.00 3.02
418 419 3.520317 TCCTTTTCGGTTTATAGGGCTCA 59.480 43.478 0.00 0.00 0.00 4.26
419 420 4.127907 CTCCTTTTCGGTTTATAGGGCTC 58.872 47.826 0.00 0.00 0.00 4.70
420 421 3.118000 CCTCCTTTTCGGTTTATAGGGCT 60.118 47.826 0.00 0.00 0.00 5.19
421 422 3.211865 CCTCCTTTTCGGTTTATAGGGC 58.788 50.000 0.00 0.00 0.00 5.19
422 423 3.457012 TCCCTCCTTTTCGGTTTATAGGG 59.543 47.826 0.00 0.00 41.33 3.53
423 424 4.704965 CTCCCTCCTTTTCGGTTTATAGG 58.295 47.826 0.00 0.00 0.00 2.57
424 425 4.127907 GCTCCCTCCTTTTCGGTTTATAG 58.872 47.826 0.00 0.00 0.00 1.31
425 426 3.520317 TGCTCCCTCCTTTTCGGTTTATA 59.480 43.478 0.00 0.00 0.00 0.98
426 427 2.307686 TGCTCCCTCCTTTTCGGTTTAT 59.692 45.455 0.00 0.00 0.00 1.40
427 428 1.700739 TGCTCCCTCCTTTTCGGTTTA 59.299 47.619 0.00 0.00 0.00 2.01
428 429 0.476771 TGCTCCCTCCTTTTCGGTTT 59.523 50.000 0.00 0.00 0.00 3.27
429 430 0.036875 CTGCTCCCTCCTTTTCGGTT 59.963 55.000 0.00 0.00 0.00 4.44
430 431 1.679898 CTGCTCCCTCCTTTTCGGT 59.320 57.895 0.00 0.00 0.00 4.69
431 432 1.078143 CCTGCTCCCTCCTTTTCGG 60.078 63.158 0.00 0.00 0.00 4.30
432 433 1.078143 CCCTGCTCCCTCCTTTTCG 60.078 63.158 0.00 0.00 0.00 3.46
433 434 0.034960 GTCCCTGCTCCCTCCTTTTC 60.035 60.000 0.00 0.00 0.00 2.29
434 435 1.501654 GGTCCCTGCTCCCTCCTTTT 61.502 60.000 0.00 0.00 0.00 2.27
435 436 1.925972 GGTCCCTGCTCCCTCCTTT 60.926 63.158 0.00 0.00 0.00 3.11
436 437 2.285743 GGTCCCTGCTCCCTCCTT 60.286 66.667 0.00 0.00 0.00 3.36
437 438 3.615811 TGGTCCCTGCTCCCTCCT 61.616 66.667 0.00 0.00 0.00 3.69
438 439 3.086600 CTGGTCCCTGCTCCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
439 440 3.086600 CCTGGTCCCTGCTCCCTC 61.087 72.222 0.00 0.00 0.00 4.30
440 441 4.748798 CCCTGGTCCCTGCTCCCT 62.749 72.222 0.00 0.00 0.00 4.20
441 442 4.741239 TCCCTGGTCCCTGCTCCC 62.741 72.222 0.00 0.00 0.00 4.30
442 443 2.003548 ATTCCCTGGTCCCTGCTCC 61.004 63.158 0.00 0.00 0.00 4.70
443 444 1.225704 CATTCCCTGGTCCCTGCTC 59.774 63.158 0.00 0.00 0.00 4.26
444 445 0.846427 TTCATTCCCTGGTCCCTGCT 60.846 55.000 0.00 0.00 0.00 4.24
445 446 0.039618 TTTCATTCCCTGGTCCCTGC 59.960 55.000 0.00 0.00 0.00 4.85
446 447 2.450476 CTTTTCATTCCCTGGTCCCTG 58.550 52.381 0.00 0.00 0.00 4.45
453 454 1.259609 TGCCTGCTTTTCATTCCCTG 58.740 50.000 0.00 0.00 0.00 4.45
454 455 2.105766 GATGCCTGCTTTTCATTCCCT 58.894 47.619 0.00 0.00 0.00 4.20
516 536 2.805546 GCAGCCACGTCGATAGGA 59.194 61.111 0.00 0.00 0.00 2.94
520 540 4.796231 GACCGCAGCCACGTCGAT 62.796 66.667 0.00 0.00 0.00 3.59
552 572 1.209504 TCCTAAATTCGACTGGCCTGG 59.790 52.381 14.82 4.64 0.00 4.45
574 598 8.662781 TCCTTTTAATAAGTGATTCATCCGAG 57.337 34.615 0.00 0.00 0.00 4.63
652 679 5.285651 CAAATACTCTCTCCATTCTCCGTC 58.714 45.833 0.00 0.00 0.00 4.79
669 696 4.378459 CGCAGGACTTTCTCAACCAAATAC 60.378 45.833 0.00 0.00 0.00 1.89
722 749 2.684881 CTGTAAGCCACACATTCCCATC 59.315 50.000 0.00 0.00 32.33 3.51
778 816 5.977725 GGTTTCTTTTTCTTCCTCTTTTCGG 59.022 40.000 0.00 0.00 0.00 4.30
1301 1340 0.797249 GGTGTGCGTGCGTAGAGTAG 60.797 60.000 0.00 0.00 0.00 2.57
1302 1341 1.210931 GGTGTGCGTGCGTAGAGTA 59.789 57.895 0.00 0.00 0.00 2.59
1303 1342 2.049433 GGTGTGCGTGCGTAGAGT 60.049 61.111 0.00 0.00 0.00 3.24
1304 1343 2.809601 GGGTGTGCGTGCGTAGAG 60.810 66.667 0.00 0.00 0.00 2.43
1305 1344 3.277211 GAGGGTGTGCGTGCGTAGA 62.277 63.158 0.00 0.00 0.00 2.59
1306 1345 2.809601 GAGGGTGTGCGTGCGTAG 60.810 66.667 0.00 0.00 0.00 3.51
1307 1346 4.367023 GGAGGGTGTGCGTGCGTA 62.367 66.667 0.00 0.00 0.00 4.42
1531 1591 6.317789 CCATAACTGGCCACATTATTACAG 57.682 41.667 0.00 0.00 35.23 2.74
1760 1845 3.428452 CGGCGGTCATCTGTCTAAAACTA 60.428 47.826 0.00 0.00 0.00 2.24
1821 1906 7.230849 TCCTTCAACATTTGCACTATGAATT 57.769 32.000 13.44 0.00 0.00 2.17
1867 1952 1.540580 GCTAGAATAACGTGCCCTCCC 60.541 57.143 0.00 0.00 0.00 4.30
2351 2436 4.815269 AGCGAGGCACATATTAAGAGATC 58.185 43.478 0.00 0.00 0.00 2.75
2421 2506 7.539710 GTGGGGTTTATTTTCGTCTTTCATTAC 59.460 37.037 0.00 0.00 0.00 1.89
2659 2746 1.973281 CGCCTGCCTGAACCATGTT 60.973 57.895 0.00 0.00 0.00 2.71
3305 3394 5.803461 TGACCGAATAACTGATTGTTAGACG 59.197 40.000 0.00 0.00 43.46 4.18
3480 3569 0.107361 GTTCCCAACCTCATACCCCG 60.107 60.000 0.00 0.00 0.00 5.73
3692 3781 2.547990 AGTACTTGTCCCCTCGGAAAT 58.452 47.619 0.00 0.00 40.92 2.17
3962 4051 7.760131 TTAGTTTGTTTATACCTCGGAATCG 57.240 36.000 0.00 0.00 37.82 3.34
4290 4379 1.885887 TGGACATGTTACCTGCAAAGC 59.114 47.619 0.00 0.00 0.00 3.51
4563 4652 5.574055 CCATCATAAATTGTGTGCAACTGAC 59.426 40.000 0.00 0.00 37.44 3.51
4564 4653 5.476254 TCCATCATAAATTGTGTGCAACTGA 59.524 36.000 0.00 0.00 37.44 3.41
4565 4654 5.712004 TCCATCATAAATTGTGTGCAACTG 58.288 37.500 0.00 0.00 37.44 3.16
4566 4655 5.981088 TCCATCATAAATTGTGTGCAACT 57.019 34.783 0.00 0.00 37.44 3.16
4751 4840 6.652900 TCAAATACCAAGCGCAATAGCATATA 59.347 34.615 11.47 0.00 42.27 0.86
4752 4841 5.473162 TCAAATACCAAGCGCAATAGCATAT 59.527 36.000 11.47 0.00 42.27 1.78
4753 4842 4.819088 TCAAATACCAAGCGCAATAGCATA 59.181 37.500 11.47 0.00 42.27 3.14
4754 4843 3.631686 TCAAATACCAAGCGCAATAGCAT 59.368 39.130 11.47 0.00 42.27 3.79
4755 4844 3.013219 TCAAATACCAAGCGCAATAGCA 58.987 40.909 11.47 0.00 42.27 3.49
4803 4894 7.331026 TCTTAGTATATCAGTGCATTATGCCC 58.669 38.462 15.06 2.66 44.23 5.36
4878 4969 5.337652 CCTTTCTCCGTGTAAATCTCCTTCT 60.338 44.000 0.00 0.00 0.00 2.85
4932 5023 1.373497 GTGACAGCCTGTCCACTCG 60.373 63.158 21.57 0.00 46.40 4.18
4964 5055 4.745751 TTCGTGGCCCGGCTTACG 62.746 66.667 24.47 24.47 43.80 3.18
4965 5056 1.918868 CTTTTCGTGGCCCGGCTTAC 61.919 60.000 9.86 8.23 37.11 2.34
4966 5057 1.673009 CTTTTCGTGGCCCGGCTTA 60.673 57.895 9.86 0.00 37.11 3.09
4967 5058 2.983592 CTTTTCGTGGCCCGGCTT 60.984 61.111 9.86 0.00 37.11 4.35
5129 5221 2.124122 TCGCCGTTCACGAATATCATG 58.876 47.619 0.00 0.00 43.02 3.07
5861 5958 4.489810 CATATACTCCAGAGATCAACCGC 58.510 47.826 0.70 0.00 0.00 5.68
5921 6018 0.656205 CGTAAAACGTGTGCAGCACC 60.656 55.000 23.06 12.86 44.97 5.01
6131 6228 0.599991 TCAAGCACGCACGTCTCAAT 60.600 50.000 0.00 0.00 0.00 2.57
6137 6234 2.029288 CCAGATCAAGCACGCACGT 61.029 57.895 0.00 0.00 0.00 4.49
6448 6545 6.529829 GTCACTCTTGTCAAGATGAGATGTAC 59.470 42.308 15.60 6.26 36.82 2.90
6450 6547 5.011431 TGTCACTCTTGTCAAGATGAGATGT 59.989 40.000 15.60 6.43 36.82 3.06
6451 6548 5.476614 TGTCACTCTTGTCAAGATGAGATG 58.523 41.667 15.60 9.38 36.82 2.90
6452 6549 5.735285 TGTCACTCTTGTCAAGATGAGAT 57.265 39.130 15.60 0.00 36.82 2.75
6453 6550 5.069648 ACTTGTCACTCTTGTCAAGATGAGA 59.930 40.000 15.60 15.19 46.10 3.27
6454 6551 5.295950 ACTTGTCACTCTTGTCAAGATGAG 58.704 41.667 15.60 7.19 46.10 2.90
6455 6552 5.282055 ACTTGTCACTCTTGTCAAGATGA 57.718 39.130 15.60 16.45 46.10 2.92
6456 6553 5.998454 AACTTGTCACTCTTGTCAAGATG 57.002 39.130 15.60 14.72 46.10 2.90
6457 6554 9.950496 ATATAAACTTGTCACTCTTGTCAAGAT 57.050 29.630 15.60 4.06 46.10 2.40
6458 6555 9.778741 AATATAAACTTGTCACTCTTGTCAAGA 57.221 29.630 14.54 14.54 46.10 3.02
6460 6557 8.289618 GCAATATAAACTTGTCACTCTTGTCAA 58.710 33.333 0.00 0.00 31.18 3.18
6461 6558 7.094805 GGCAATATAAACTTGTCACTCTTGTCA 60.095 37.037 0.00 0.00 0.00 3.58
6462 6559 7.094805 TGGCAATATAAACTTGTCACTCTTGTC 60.095 37.037 0.00 0.00 33.54 3.18
6463 6560 6.714810 TGGCAATATAAACTTGTCACTCTTGT 59.285 34.615 0.00 0.00 33.54 3.16
6464 6561 7.144722 TGGCAATATAAACTTGTCACTCTTG 57.855 36.000 0.00 0.00 33.54 3.02
6465 6562 7.759489 TTGGCAATATAAACTTGTCACTCTT 57.241 32.000 0.00 0.00 37.90 2.85
6466 6563 7.759489 TTTGGCAATATAAACTTGTCACTCT 57.241 32.000 0.00 0.00 37.90 3.24
6467 6564 8.986477 AATTTGGCAATATAAACTTGTCACTC 57.014 30.769 0.00 0.00 37.90 3.51
6468 6565 9.423061 GAAATTTGGCAATATAAACTTGTCACT 57.577 29.630 0.00 0.00 37.90 3.41
6469 6566 9.423061 AGAAATTTGGCAATATAAACTTGTCAC 57.577 29.630 0.00 0.00 37.90 3.67
6611 6718 7.609760 AGAATGTAGACGAATTTGCATTACA 57.390 32.000 0.00 6.87 31.22 2.41
6695 6802 4.089361 ACCCCTTTCCATGTTTGAATCTC 58.911 43.478 0.00 0.00 0.00 2.75
6867 6976 1.686355 ACCACACTCATGGCGAAAAA 58.314 45.000 0.00 0.00 44.33 1.94
6965 7074 4.202121 GGGGAGTTCAAAACAGAAAGGTTC 60.202 45.833 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.