Multiple sequence alignment - TraesCS5D01G336400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G336400 chr5D 100.000 5628 0 0 1 5628 425852394 425846767 0.000000e+00 10394.0
1 TraesCS5D01G336400 chr5D 84.000 725 70 25 2801 3488 47308442 47307727 0.000000e+00 654.0
2 TraesCS5D01G336400 chr5D 85.274 292 28 6 3200 3488 57569374 57569653 2.570000e-73 287.0
3 TraesCS5D01G336400 chr5D 85.549 173 15 7 2 168 58285965 58286133 7.500000e-39 172.0
4 TraesCS5D01G336400 chr5A 90.900 1901 130 26 548 2415 540064439 540062549 0.000000e+00 2512.0
5 TraesCS5D01G336400 chr5A 91.130 1319 89 17 3565 4861 540061667 540060355 0.000000e+00 1762.0
6 TraesCS5D01G336400 chr5A 93.907 755 36 6 2778 3528 540062504 540061756 0.000000e+00 1131.0
7 TraesCS5D01G336400 chr5A 87.062 371 24 13 5260 5628 540058301 540057953 1.140000e-106 398.0
8 TraesCS5D01G336400 chr5A 84.874 357 22 5 2414 2740 540062857 540062503 1.170000e-86 331.0
9 TraesCS5D01G336400 chr5A 86.538 312 14 9 4854 5140 540058726 540058418 9.100000e-83 318.0
10 TraesCS5D01G336400 chr5A 93.913 115 7 0 5119 5233 540058404 540058290 2.080000e-39 174.0
11 TraesCS5D01G336400 chr5A 84.416 154 14 6 1 144 328541265 328541112 5.880000e-30 143.0
12 TraesCS5D01G336400 chr5B 89.587 1863 141 28 597 2412 515198449 515196593 0.000000e+00 2316.0
13 TraesCS5D01G336400 chr5B 91.516 1273 69 17 3980 5234 515194253 515193002 0.000000e+00 1716.0
14 TraesCS5D01G336400 chr5B 91.385 325 21 5 5257 5577 515193018 515192697 6.690000e-119 438.0
15 TraesCS5D01G336400 chr5B 100.000 39 0 0 3528 3566 566119916 566119878 7.820000e-09 73.1
16 TraesCS5D01G336400 chr7D 93.128 553 29 2 1 544 364624763 364625315 0.000000e+00 802.0
17 TraesCS5D01G336400 chr7D 91.696 566 37 3 1 556 108238832 108238267 0.000000e+00 776.0
18 TraesCS5D01G336400 chr7D 91.470 551 37 3 3 544 19572310 19571761 0.000000e+00 749.0
19 TraesCS5D01G336400 chr7D 90.778 553 42 2 1 544 446355358 446354806 0.000000e+00 730.0
20 TraesCS5D01G336400 chr7D 83.938 193 21 5 3565 3747 75803547 75803739 5.790000e-40 176.0
21 TraesCS5D01G336400 chr7D 98.039 51 1 0 3478 3528 556642500 556642450 7.770000e-14 89.8
22 TraesCS5D01G336400 chr2D 91.833 551 36 2 3 544 445184245 445184795 0.000000e+00 760.0
23 TraesCS5D01G336400 chr2D 90.820 512 37 3 43 544 646368897 646369408 0.000000e+00 676.0
24 TraesCS5D01G336400 chr6B 91.575 546 43 3 1 544 139898068 139898612 0.000000e+00 750.0
25 TraesCS5D01G336400 chr4D 91.320 553 38 4 1 544 405709876 405710427 0.000000e+00 747.0
26 TraesCS5D01G336400 chr4D 88.268 358 32 7 3133 3488 340400986 340401335 2.420000e-113 420.0
27 TraesCS5D01G336400 chr4D 87.938 257 17 7 3234 3478 264465595 264465849 1.980000e-74 291.0
28 TraesCS5D01G336400 chr4D 88.710 186 20 1 3304 3488 158372896 158373081 5.670000e-55 226.0
29 TraesCS5D01G336400 chr4D 98.039 51 1 0 3478 3528 222593097 222593047 7.770000e-14 89.8
30 TraesCS5D01G336400 chr7A 91.039 558 41 2 1 549 182180028 182179471 0.000000e+00 745.0
31 TraesCS5D01G336400 chr7A 90.674 193 16 2 2940 3131 105216876 105217067 7.240000e-64 255.0
32 TraesCS5D01G336400 chr6D 90.892 527 36 5 1 518 472929409 472928886 0.000000e+00 697.0
33 TraesCS5D01G336400 chr6D 91.192 193 15 2 2940 3131 159231511 159231320 1.560000e-65 261.0
34 TraesCS5D01G336400 chr4A 85.099 604 64 17 2555 3138 478073651 478074248 1.350000e-165 593.0
35 TraesCS5D01G336400 chr4A 83.670 594 78 11 2555 3131 602905393 602904802 4.960000e-150 542.0
36 TraesCS5D01G336400 chr4A 88.858 359 34 6 3132 3488 122734076 122734430 2.410000e-118 436.0
37 TraesCS5D01G336400 chr4A 84.870 423 34 4 2940 3334 596709975 596710395 3.160000e-107 399.0
38 TraesCS5D01G336400 chr6A 83.912 634 68 17 2870 3486 254962777 254962161 4.890000e-160 575.0
39 TraesCS5D01G336400 chr3D 84.452 566 56 13 1 544 280280082 280280637 3.860000e-146 529.0
40 TraesCS5D01G336400 chr3D 83.854 192 22 3 3565 3747 583317776 583317967 2.080000e-39 174.0
41 TraesCS5D01G336400 chr3D 97.500 40 1 0 3527 3566 47090322 47090283 1.010000e-07 69.4
42 TraesCS5D01G336400 chrUn 84.870 423 34 4 2940 3334 134113696 134114116 3.160000e-107 399.0
43 TraesCS5D01G336400 chrUn 89.076 119 12 1 3013 3131 47737687 47737570 4.540000e-31 147.0
44 TraesCS5D01G336400 chr2A 85.556 360 43 5 3137 3488 306003939 306003581 8.910000e-98 368.0
45 TraesCS5D01G336400 chr2A 92.063 126 8 2 3007 3131 611959168 611959044 5.790000e-40 176.0
46 TraesCS5D01G336400 chr1B 90.155 193 17 2 2940 3131 31365759 31365568 3.370000e-62 250.0
47 TraesCS5D01G336400 chr3B 86.667 180 21 3 1 179 229508695 229508518 4.450000e-46 196.0
48 TraesCS5D01G336400 chr3B 89.412 85 7 2 3484 3566 816036778 816036862 7.710000e-19 106.0
49 TraesCS5D01G336400 chr3B 100.000 39 0 0 3528 3566 457968727 457968689 7.820000e-09 73.1
50 TraesCS5D01G336400 chr3B 93.478 46 2 1 3522 3566 798497646 798497691 3.640000e-07 67.6
51 TraesCS5D01G336400 chr3B 93.478 46 2 1 3522 3566 819648901 819648946 3.640000e-07 67.6
52 TraesCS5D01G336400 chr1A 84.768 151 13 6 1 141 120016239 120016389 5.880000e-30 143.0
53 TraesCS5D01G336400 chr2B 83.333 150 16 5 1 141 747098653 747098802 4.580000e-26 130.0
54 TraesCS5D01G336400 chr2B 98.077 52 1 0 3477 3528 687933568 687933619 2.160000e-14 91.6
55 TraesCS5D01G336400 chr7B 87.500 88 8 1 3477 3564 747705659 747705575 1.290000e-16 99.0
56 TraesCS5D01G336400 chr7B 85.366 82 9 2 3450 3528 297402330 297402249 1.300000e-11 82.4
57 TraesCS5D01G336400 chr4B 92.308 65 3 2 3466 3528 299557564 299557628 2.160000e-14 91.6
58 TraesCS5D01G336400 chr4B 98.077 52 1 0 3477 3528 636915356 636915305 2.160000e-14 91.6
59 TraesCS5D01G336400 chr4B 100.000 39 0 0 3528 3566 143310010 143309972 7.820000e-09 73.1
60 TraesCS5D01G336400 chr4B 97.561 41 1 0 3527 3567 17258813 17258773 2.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G336400 chr5D 425846767 425852394 5627 True 10394.000000 10394 100.000000 1 5628 1 chr5D.!!$R2 5627
1 TraesCS5D01G336400 chr5D 47307727 47308442 715 True 654.000000 654 84.000000 2801 3488 1 chr5D.!!$R1 687
2 TraesCS5D01G336400 chr5A 540057953 540064439 6486 True 946.571429 2512 89.760571 548 5628 7 chr5A.!!$R2 5080
3 TraesCS5D01G336400 chr5B 515192697 515198449 5752 True 1490.000000 2316 90.829333 597 5577 3 chr5B.!!$R2 4980
4 TraesCS5D01G336400 chr7D 364624763 364625315 552 False 802.000000 802 93.128000 1 544 1 chr7D.!!$F2 543
5 TraesCS5D01G336400 chr7D 108238267 108238832 565 True 776.000000 776 91.696000 1 556 1 chr7D.!!$R2 555
6 TraesCS5D01G336400 chr7D 19571761 19572310 549 True 749.000000 749 91.470000 3 544 1 chr7D.!!$R1 541
7 TraesCS5D01G336400 chr7D 446354806 446355358 552 True 730.000000 730 90.778000 1 544 1 chr7D.!!$R3 543
8 TraesCS5D01G336400 chr2D 445184245 445184795 550 False 760.000000 760 91.833000 3 544 1 chr2D.!!$F1 541
9 TraesCS5D01G336400 chr2D 646368897 646369408 511 False 676.000000 676 90.820000 43 544 1 chr2D.!!$F2 501
10 TraesCS5D01G336400 chr6B 139898068 139898612 544 False 750.000000 750 91.575000 1 544 1 chr6B.!!$F1 543
11 TraesCS5D01G336400 chr4D 405709876 405710427 551 False 747.000000 747 91.320000 1 544 1 chr4D.!!$F4 543
12 TraesCS5D01G336400 chr7A 182179471 182180028 557 True 745.000000 745 91.039000 1 549 1 chr7A.!!$R1 548
13 TraesCS5D01G336400 chr6D 472928886 472929409 523 True 697.000000 697 90.892000 1 518 1 chr6D.!!$R2 517
14 TraesCS5D01G336400 chr4A 478073651 478074248 597 False 593.000000 593 85.099000 2555 3138 1 chr4A.!!$F2 583
15 TraesCS5D01G336400 chr4A 602904802 602905393 591 True 542.000000 542 83.670000 2555 3131 1 chr4A.!!$R1 576
16 TraesCS5D01G336400 chr6A 254962161 254962777 616 True 575.000000 575 83.912000 2870 3486 1 chr6A.!!$R1 616
17 TraesCS5D01G336400 chr3D 280280082 280280637 555 False 529.000000 529 84.452000 1 544 1 chr3D.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 161 0.322816 AGTTGCCATGTACCCTGCAG 60.323 55.000 6.78 6.78 34.81 4.41 F
529 555 0.819666 TGCAAACGCCCACATGTGTA 60.820 50.000 23.79 0.00 0.00 2.90 F
1561 1609 0.953471 TACAAGGACATGGTGCGTGC 60.953 55.000 0.00 0.00 36.94 5.34 F
2235 2284 0.036671 GGTTGCTGTAGGGCGTTACT 60.037 55.000 0.00 0.00 34.52 2.24 F
2324 2373 0.106419 AGTTTCCTTGCCCGTTTCCA 60.106 50.000 0.00 0.00 0.00 3.53 F
2326 2375 0.106419 TTTCCTTGCCCGTTTCCAGT 60.106 50.000 0.00 0.00 0.00 4.00 F
2327 2376 0.106419 TTCCTTGCCCGTTTCCAGTT 60.106 50.000 0.00 0.00 0.00 3.16 F
2328 2377 0.106419 TCCTTGCCCGTTTCCAGTTT 60.106 50.000 0.00 0.00 0.00 2.66 F
2405 2454 0.407139 AGGCCTGAACAGAAATGCCT 59.593 50.000 3.11 13.65 44.08 4.75 F
3511 4537 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2094 0.461961 AGGGTGCGTCTCTTATGAGC 59.538 55.000 0.72 0.00 40.03 4.26 R
2216 2265 0.036671 AGTAACGCCCTACAGCAACC 60.037 55.000 0.00 0.00 0.00 3.77 R
3179 4182 0.243365 TCGCCGAAGCATGCAAAATT 59.757 45.000 21.98 4.83 39.83 1.82 R
4131 5531 1.225376 TTACCGTTCCAGCAGCAACG 61.225 55.000 9.05 9.05 44.02 4.10 R
4453 5860 7.818930 GGAATCAATCATTAAGGCTGTTTTTCA 59.181 33.333 0.00 0.00 0.00 2.69 R
4455 5862 7.910584 AGGAATCAATCATTAAGGCTGTTTTT 58.089 30.769 0.00 0.00 0.00 1.94 R
4461 5868 4.957954 TGCAAGGAATCAATCATTAAGGCT 59.042 37.500 0.00 0.00 29.32 4.58 R
4462 5869 5.266733 TGCAAGGAATCAATCATTAAGGC 57.733 39.130 0.00 0.00 29.32 4.35 R
4463 5870 6.220930 CCATGCAAGGAATCAATCATTAAGG 58.779 40.000 0.35 0.00 29.32 2.69 R
5533 8650 0.179056 CGGATGGATGTAGCCCGTTT 60.179 55.000 0.00 0.00 35.83 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.492611 GAGTTGCCACCTACTAACACTAC 58.507 47.826 0.00 0.00 0.00 2.73
151 161 0.322816 AGTTGCCATGTACCCTGCAG 60.323 55.000 6.78 6.78 34.81 4.41
199 210 6.462487 CGGGTAAAAGAGATAGTTGCCATCTA 60.462 42.308 0.00 0.00 32.86 1.98
210 222 4.848357 AGTTGCCATCTACTTACAAGCAT 58.152 39.130 0.00 0.00 0.00 3.79
213 225 4.703897 TGCCATCTACTTACAAGCATACC 58.296 43.478 0.00 0.00 0.00 2.73
218 230 4.359105 TCTACTTACAAGCATACCAGGGT 58.641 43.478 0.00 0.00 0.00 4.34
250 263 1.417145 ACCTGCAAAACACATGGCAAT 59.583 42.857 0.00 0.00 35.59 3.56
314 329 1.401552 CTGATAAATGCCCACACACCG 59.598 52.381 0.00 0.00 0.00 4.94
338 353 1.670811 CCTGTGCGTGAGTGAAAACTT 59.329 47.619 0.00 0.00 0.00 2.66
431 447 1.617850 GATGAATGCCCACACACCAAA 59.382 47.619 0.00 0.00 0.00 3.28
529 555 0.819666 TGCAAACGCCCACATGTGTA 60.820 50.000 23.79 0.00 0.00 2.90
678 704 7.093684 GCCCACTAAAGGTATATTGGTTCAAAA 60.094 37.037 0.00 0.00 0.00 2.44
822 863 1.074072 TGAACCCATCCACCAACCG 59.926 57.895 0.00 0.00 0.00 4.44
861 902 2.808206 AATCCCTCCATCCGACGGC 61.808 63.158 9.66 0.00 0.00 5.68
913 954 4.686437 CCCCCACCTACCCCACCA 62.686 72.222 0.00 0.00 0.00 4.17
1132 1180 2.399607 ATCCCCTCCTCCTCTCGCT 61.400 63.158 0.00 0.00 0.00 4.93
1239 1287 2.657237 GTGTCCAGGGTCTCCACG 59.343 66.667 0.00 0.00 34.83 4.94
1293 1341 1.906824 GATCTACATCGGGCCCGGA 60.907 63.158 42.36 30.79 40.25 5.14
1502 1550 1.265905 CTCACGCACCAAAACCCTAAC 59.734 52.381 0.00 0.00 0.00 2.34
1561 1609 0.953471 TACAAGGACATGGTGCGTGC 60.953 55.000 0.00 0.00 36.94 5.34
1571 1619 3.499737 GTGCGTGCGGGATTCAGG 61.500 66.667 0.00 0.00 0.00 3.86
1586 1634 2.922740 TCAGGGTTTACTCGTGCTTT 57.077 45.000 0.00 0.00 0.00 3.51
1591 1639 4.151867 CAGGGTTTACTCGTGCTTTAGTTC 59.848 45.833 0.00 0.00 0.00 3.01
1592 1640 3.434641 GGGTTTACTCGTGCTTTAGTTCC 59.565 47.826 0.00 0.00 0.00 3.62
1594 1642 4.388165 GGTTTACTCGTGCTTTAGTTCCTC 59.612 45.833 0.00 0.00 0.00 3.71
1601 1649 3.614616 CGTGCTTTAGTTCCTCTCATCAC 59.385 47.826 0.00 0.00 0.00 3.06
1602 1650 4.619394 CGTGCTTTAGTTCCTCTCATCACT 60.619 45.833 0.00 0.00 0.00 3.41
1623 1671 6.017440 TCACTTGGATGTAGTTAACTTGTTGC 60.017 38.462 14.49 4.85 0.00 4.17
1627 1675 5.121611 TGGATGTAGTTAACTTGTTGCGATG 59.878 40.000 14.49 0.00 0.00 3.84
1628 1676 4.398549 TGTAGTTAACTTGTTGCGATGC 57.601 40.909 14.49 0.00 0.00 3.91
1740 1788 2.268076 GGACATGTGCGGGTTTGCT 61.268 57.895 1.15 0.00 35.36 3.91
1805 1853 1.997311 CTCTGATGGCCCAGGTCCA 60.997 63.158 0.00 0.00 38.09 4.02
1964 2013 1.450312 ATTCTACCAGCCGCAGTGC 60.450 57.895 4.58 4.58 0.00 4.40
2012 2061 2.182827 ACATTGCCTGACAGAGAGCTA 58.817 47.619 3.32 0.00 0.00 3.32
2045 2094 1.407437 GCTGAGGTGGTGAAGTATGGG 60.407 57.143 0.00 0.00 0.00 4.00
2112 2161 2.408704 GCAGCAATATTAGCGAGGTACG 59.591 50.000 0.00 0.00 45.66 3.67
2118 2167 2.493713 ATTAGCGAGGTACGAAGCAG 57.506 50.000 7.61 0.00 45.77 4.24
2128 2177 3.314357 AGGTACGAAGCAGGTTTTGAAAC 59.686 43.478 0.00 0.00 38.17 2.78
2143 2192 6.745907 GGTTTTGAAACTGATATTAGGCGTTC 59.254 38.462 6.57 1.23 38.89 3.95
2145 2194 6.662414 TTGAAACTGATATTAGGCGTTCAG 57.338 37.500 4.66 4.66 41.06 3.02
2155 2204 2.551270 GCGTTCAGCGTCACCAAG 59.449 61.111 0.00 0.00 43.66 3.61
2156 2205 2.244651 GCGTTCAGCGTCACCAAGT 61.245 57.895 0.00 0.00 43.66 3.16
2157 2206 1.564622 CGTTCAGCGTCACCAAGTG 59.435 57.895 0.00 0.00 35.54 3.16
2158 2207 1.151777 CGTTCAGCGTCACCAAGTGT 61.152 55.000 0.00 0.00 34.79 3.55
2159 2208 1.014352 GTTCAGCGTCACCAAGTGTT 58.986 50.000 0.00 0.00 34.79 3.32
2160 2209 2.206750 GTTCAGCGTCACCAAGTGTTA 58.793 47.619 0.00 0.00 34.79 2.41
2161 2210 2.806244 GTTCAGCGTCACCAAGTGTTAT 59.194 45.455 0.00 0.00 34.79 1.89
2162 2211 3.120321 TCAGCGTCACCAAGTGTTATT 57.880 42.857 0.00 0.00 34.79 1.40
2163 2212 3.472652 TCAGCGTCACCAAGTGTTATTT 58.527 40.909 0.00 0.00 34.79 1.40
2164 2213 3.880490 TCAGCGTCACCAAGTGTTATTTT 59.120 39.130 0.00 0.00 34.79 1.82
2165 2214 3.974401 CAGCGTCACCAAGTGTTATTTTG 59.026 43.478 0.00 0.00 34.79 2.44
2166 2215 3.880490 AGCGTCACCAAGTGTTATTTTGA 59.120 39.130 0.00 0.00 34.79 2.69
2167 2216 4.518970 AGCGTCACCAAGTGTTATTTTGAT 59.481 37.500 0.00 0.00 34.79 2.57
2168 2217 5.009610 AGCGTCACCAAGTGTTATTTTGATT 59.990 36.000 0.00 0.00 34.79 2.57
2169 2218 5.689961 GCGTCACCAAGTGTTATTTTGATTT 59.310 36.000 0.00 0.00 34.79 2.17
2170 2219 6.858993 GCGTCACCAAGTGTTATTTTGATTTA 59.141 34.615 0.00 0.00 34.79 1.40
2171 2220 7.060633 GCGTCACCAAGTGTTATTTTGATTTAG 59.939 37.037 0.00 0.00 34.79 1.85
2172 2221 8.073768 CGTCACCAAGTGTTATTTTGATTTAGT 58.926 33.333 0.00 0.00 34.79 2.24
2198 2247 7.736447 AGATATTAGCAAGGTAAAGACATGC 57.264 36.000 0.00 0.00 39.17 4.06
2199 2248 7.282585 AGATATTAGCAAGGTAAAGACATGCA 58.717 34.615 0.00 0.00 40.53 3.96
2200 2249 7.775093 AGATATTAGCAAGGTAAAGACATGCAA 59.225 33.333 0.00 0.00 40.53 4.08
2201 2250 6.780457 ATTAGCAAGGTAAAGACATGCAAT 57.220 33.333 0.00 0.00 40.53 3.56
2202 2251 6.588719 TTAGCAAGGTAAAGACATGCAATT 57.411 33.333 0.00 0.00 40.53 2.32
2203 2252 4.813027 AGCAAGGTAAAGACATGCAATTG 58.187 39.130 0.00 0.00 40.53 2.32
2204 2253 3.368843 GCAAGGTAAAGACATGCAATTGC 59.631 43.478 23.69 23.69 38.88 3.56
2220 2269 6.276611 GCAATTGCATTACATATGTGGTTG 57.723 37.500 25.36 13.06 41.59 3.77
2221 2270 5.276963 GCAATTGCATTACATATGTGGTTGC 60.277 40.000 25.36 21.09 41.59 4.17
2222 2271 5.857471 ATTGCATTACATATGTGGTTGCT 57.143 34.783 26.13 13.76 33.03 3.91
2223 2272 4.635833 TGCATTACATATGTGGTTGCTG 57.364 40.909 26.13 14.21 33.03 4.41
2224 2273 4.015764 TGCATTACATATGTGGTTGCTGT 58.984 39.130 26.13 3.81 33.03 4.40
2225 2274 5.189180 TGCATTACATATGTGGTTGCTGTA 58.811 37.500 26.13 13.28 33.03 2.74
2226 2275 5.296531 TGCATTACATATGTGGTTGCTGTAG 59.703 40.000 26.13 7.77 33.03 2.74
2227 2276 5.277974 GCATTACATATGTGGTTGCTGTAGG 60.278 44.000 18.81 0.00 0.00 3.18
2228 2277 3.281727 ACATATGTGGTTGCTGTAGGG 57.718 47.619 7.78 0.00 0.00 3.53
2229 2278 1.949525 CATATGTGGTTGCTGTAGGGC 59.050 52.381 0.00 0.00 0.00 5.19
2230 2279 0.107897 TATGTGGTTGCTGTAGGGCG 60.108 55.000 0.00 0.00 34.52 6.13
2231 2280 2.032071 GTGGTTGCTGTAGGGCGT 59.968 61.111 0.00 0.00 34.52 5.68
2232 2281 1.599797 GTGGTTGCTGTAGGGCGTT 60.600 57.895 0.00 0.00 34.52 4.84
2233 2282 0.320946 GTGGTTGCTGTAGGGCGTTA 60.321 55.000 0.00 0.00 34.52 3.18
2234 2283 0.320946 TGGTTGCTGTAGGGCGTTAC 60.321 55.000 0.00 0.00 34.52 2.50
2235 2284 0.036671 GGTTGCTGTAGGGCGTTACT 60.037 55.000 0.00 0.00 34.52 2.24
2236 2285 1.609841 GGTTGCTGTAGGGCGTTACTT 60.610 52.381 0.00 0.00 34.52 2.24
2237 2286 2.354003 GGTTGCTGTAGGGCGTTACTTA 60.354 50.000 0.00 0.00 34.52 2.24
2238 2287 3.528532 GTTGCTGTAGGGCGTTACTTAT 58.471 45.455 0.00 0.00 34.52 1.73
2239 2288 3.899052 TGCTGTAGGGCGTTACTTATT 57.101 42.857 0.00 0.00 34.52 1.40
2240 2289 3.527533 TGCTGTAGGGCGTTACTTATTG 58.472 45.455 0.00 0.00 34.52 1.90
2241 2290 3.196039 TGCTGTAGGGCGTTACTTATTGA 59.804 43.478 0.00 0.00 34.52 2.57
2242 2291 4.141801 TGCTGTAGGGCGTTACTTATTGAT 60.142 41.667 0.00 0.00 34.52 2.57
2243 2292 4.814771 GCTGTAGGGCGTTACTTATTGATT 59.185 41.667 0.00 0.00 0.00 2.57
2244 2293 5.050295 GCTGTAGGGCGTTACTTATTGATTC 60.050 44.000 0.00 0.00 0.00 2.52
2245 2294 6.229936 TGTAGGGCGTTACTTATTGATTCT 57.770 37.500 0.00 0.00 0.00 2.40
2246 2295 7.350744 TGTAGGGCGTTACTTATTGATTCTA 57.649 36.000 0.00 0.00 0.00 2.10
2247 2296 7.784037 TGTAGGGCGTTACTTATTGATTCTAA 58.216 34.615 0.00 0.00 0.00 2.10
2248 2297 7.924412 TGTAGGGCGTTACTTATTGATTCTAAG 59.076 37.037 0.00 0.00 33.36 2.18
2249 2298 6.885922 AGGGCGTTACTTATTGATTCTAAGT 58.114 36.000 4.37 4.37 41.20 2.24
2250 2299 8.015185 AGGGCGTTACTTATTGATTCTAAGTA 57.985 34.615 2.86 2.86 39.50 2.24
2251 2300 8.142551 AGGGCGTTACTTATTGATTCTAAGTAG 58.857 37.037 5.96 0.00 40.74 2.57
2252 2301 7.924947 GGGCGTTACTTATTGATTCTAAGTAGT 59.075 37.037 5.96 0.00 40.74 2.73
2253 2302 9.310716 GGCGTTACTTATTGATTCTAAGTAGTT 57.689 33.333 5.96 0.00 40.74 2.24
2259 2308 9.155975 ACTTATTGATTCTAAGTAGTTGTGCAG 57.844 33.333 0.00 0.00 37.59 4.41
2260 2309 9.155975 CTTATTGATTCTAAGTAGTTGTGCAGT 57.844 33.333 0.00 0.00 0.00 4.40
2261 2310 7.602517 ATTGATTCTAAGTAGTTGTGCAGTC 57.397 36.000 0.00 0.00 0.00 3.51
2262 2311 6.346477 TGATTCTAAGTAGTTGTGCAGTCT 57.654 37.500 0.00 0.00 0.00 3.24
2263 2312 7.462571 TGATTCTAAGTAGTTGTGCAGTCTA 57.537 36.000 0.00 0.00 0.00 2.59
2264 2313 7.892609 TGATTCTAAGTAGTTGTGCAGTCTAA 58.107 34.615 0.00 0.00 0.00 2.10
2265 2314 8.531982 TGATTCTAAGTAGTTGTGCAGTCTAAT 58.468 33.333 0.00 0.00 0.00 1.73
2266 2315 8.934507 ATTCTAAGTAGTTGTGCAGTCTAATC 57.065 34.615 0.00 0.00 0.00 1.75
2267 2316 7.704578 TCTAAGTAGTTGTGCAGTCTAATCT 57.295 36.000 0.00 0.00 0.00 2.40
2268 2317 8.123639 TCTAAGTAGTTGTGCAGTCTAATCTT 57.876 34.615 0.00 0.00 0.00 2.40
2269 2318 8.029522 TCTAAGTAGTTGTGCAGTCTAATCTTG 58.970 37.037 0.00 0.00 0.00 3.02
2270 2319 6.102897 AGTAGTTGTGCAGTCTAATCTTGT 57.897 37.500 0.00 0.00 0.00 3.16
2271 2320 6.159988 AGTAGTTGTGCAGTCTAATCTTGTC 58.840 40.000 0.00 0.00 0.00 3.18
2272 2321 5.220710 AGTTGTGCAGTCTAATCTTGTCT 57.779 39.130 0.00 0.00 0.00 3.41
2273 2322 4.993584 AGTTGTGCAGTCTAATCTTGTCTG 59.006 41.667 0.00 0.00 0.00 3.51
2274 2323 3.930336 TGTGCAGTCTAATCTTGTCTGG 58.070 45.455 0.00 0.00 0.00 3.86
2275 2324 3.265791 GTGCAGTCTAATCTTGTCTGGG 58.734 50.000 0.00 0.00 0.00 4.45
2276 2325 2.237143 TGCAGTCTAATCTTGTCTGGGG 59.763 50.000 0.00 0.00 0.00 4.96
2277 2326 2.237392 GCAGTCTAATCTTGTCTGGGGT 59.763 50.000 0.00 0.00 0.00 4.95
2278 2327 3.307762 GCAGTCTAATCTTGTCTGGGGTT 60.308 47.826 0.00 0.00 0.00 4.11
2279 2328 4.807643 GCAGTCTAATCTTGTCTGGGGTTT 60.808 45.833 0.00 0.00 0.00 3.27
2280 2329 5.316987 CAGTCTAATCTTGTCTGGGGTTTT 58.683 41.667 0.00 0.00 0.00 2.43
2281 2330 6.472887 CAGTCTAATCTTGTCTGGGGTTTTA 58.527 40.000 0.00 0.00 0.00 1.52
2282 2331 6.595716 CAGTCTAATCTTGTCTGGGGTTTTAG 59.404 42.308 0.00 0.00 0.00 1.85
2283 2332 5.354513 GTCTAATCTTGTCTGGGGTTTTAGC 59.645 44.000 0.00 0.00 0.00 3.09
2284 2333 4.388577 AATCTTGTCTGGGGTTTTAGCT 57.611 40.909 0.00 0.00 0.00 3.32
2285 2334 3.418684 TCTTGTCTGGGGTTTTAGCTC 57.581 47.619 0.00 0.00 0.00 4.09
2286 2335 2.708861 TCTTGTCTGGGGTTTTAGCTCA 59.291 45.455 0.00 0.00 0.00 4.26
2287 2336 3.330701 TCTTGTCTGGGGTTTTAGCTCAT 59.669 43.478 0.00 0.00 0.00 2.90
2288 2337 4.534500 TCTTGTCTGGGGTTTTAGCTCATA 59.466 41.667 0.00 0.00 0.00 2.15
2289 2338 5.191722 TCTTGTCTGGGGTTTTAGCTCATAT 59.808 40.000 0.00 0.00 0.00 1.78
2290 2339 5.450818 TGTCTGGGGTTTTAGCTCATATT 57.549 39.130 0.00 0.00 0.00 1.28
2291 2340 6.569127 TGTCTGGGGTTTTAGCTCATATTA 57.431 37.500 0.00 0.00 0.00 0.98
2292 2341 6.591935 TGTCTGGGGTTTTAGCTCATATTAG 58.408 40.000 0.00 0.00 0.00 1.73
2293 2342 6.157994 TGTCTGGGGTTTTAGCTCATATTAGT 59.842 38.462 0.00 0.00 0.00 2.24
2294 2343 7.346175 TGTCTGGGGTTTTAGCTCATATTAGTA 59.654 37.037 0.00 0.00 0.00 1.82
2295 2344 8.376270 GTCTGGGGTTTTAGCTCATATTAGTAT 58.624 37.037 0.00 0.00 0.00 2.12
2296 2345 8.375506 TCTGGGGTTTTAGCTCATATTAGTATG 58.624 37.037 0.00 0.00 39.25 2.39
2297 2346 8.270137 TGGGGTTTTAGCTCATATTAGTATGA 57.730 34.615 7.62 7.62 43.33 2.15
2298 2347 8.154856 TGGGGTTTTAGCTCATATTAGTATGAC 58.845 37.037 3.94 2.78 41.28 3.06
2299 2348 8.376270 GGGGTTTTAGCTCATATTAGTATGACT 58.624 37.037 3.94 8.88 41.28 3.41
2300 2349 9.780186 GGGTTTTAGCTCATATTAGTATGACTT 57.220 33.333 3.94 0.00 41.28 3.01
2315 2364 7.203255 AGTATGACTTGTTAAGTTTCCTTGC 57.797 36.000 0.00 0.00 43.03 4.01
2316 2365 4.911514 TGACTTGTTAAGTTTCCTTGCC 57.088 40.909 0.00 0.00 43.03 4.52
2317 2366 3.634910 TGACTTGTTAAGTTTCCTTGCCC 59.365 43.478 0.00 0.00 43.03 5.36
2318 2367 2.621526 ACTTGTTAAGTTTCCTTGCCCG 59.378 45.455 0.00 0.00 39.04 6.13
2319 2368 2.351706 TGTTAAGTTTCCTTGCCCGT 57.648 45.000 0.00 0.00 31.89 5.28
2320 2369 2.657143 TGTTAAGTTTCCTTGCCCGTT 58.343 42.857 0.00 0.00 31.89 4.44
2321 2370 3.025262 TGTTAAGTTTCCTTGCCCGTTT 58.975 40.909 0.00 0.00 31.89 3.60
2322 2371 3.067040 TGTTAAGTTTCCTTGCCCGTTTC 59.933 43.478 0.00 0.00 31.89 2.78
2323 2372 1.037493 AAGTTTCCTTGCCCGTTTCC 58.963 50.000 0.00 0.00 0.00 3.13
2324 2373 0.106419 AGTTTCCTTGCCCGTTTCCA 60.106 50.000 0.00 0.00 0.00 3.53
2325 2374 0.313987 GTTTCCTTGCCCGTTTCCAG 59.686 55.000 0.00 0.00 0.00 3.86
2326 2375 0.106419 TTTCCTTGCCCGTTTCCAGT 60.106 50.000 0.00 0.00 0.00 4.00
2327 2376 0.106419 TTCCTTGCCCGTTTCCAGTT 60.106 50.000 0.00 0.00 0.00 3.16
2328 2377 0.106419 TCCTTGCCCGTTTCCAGTTT 60.106 50.000 0.00 0.00 0.00 2.66
2329 2378 0.750249 CCTTGCCCGTTTCCAGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
2330 2379 1.537990 CCTTGCCCGTTTCCAGTTTTG 60.538 52.381 0.00 0.00 0.00 2.44
2331 2380 1.407258 CTTGCCCGTTTCCAGTTTTGA 59.593 47.619 0.00 0.00 0.00 2.69
2332 2381 1.475403 TGCCCGTTTCCAGTTTTGAA 58.525 45.000 0.00 0.00 0.00 2.69
2333 2382 1.825474 TGCCCGTTTCCAGTTTTGAAA 59.175 42.857 0.00 0.00 0.00 2.69
2334 2383 2.432510 TGCCCGTTTCCAGTTTTGAAAT 59.567 40.909 0.00 0.00 34.50 2.17
2335 2384 3.637229 TGCCCGTTTCCAGTTTTGAAATA 59.363 39.130 0.00 0.00 34.50 1.40
2336 2385 4.282195 TGCCCGTTTCCAGTTTTGAAATAT 59.718 37.500 0.00 0.00 34.50 1.28
2337 2386 4.862574 GCCCGTTTCCAGTTTTGAAATATC 59.137 41.667 0.00 0.00 34.50 1.63
2338 2387 5.092781 CCCGTTTCCAGTTTTGAAATATCG 58.907 41.667 0.00 0.00 34.50 2.92
2339 2388 5.106475 CCCGTTTCCAGTTTTGAAATATCGA 60.106 40.000 0.00 0.00 34.50 3.59
2340 2389 6.021596 CCGTTTCCAGTTTTGAAATATCGAG 58.978 40.000 0.00 0.00 34.50 4.04
2341 2390 6.128391 CCGTTTCCAGTTTTGAAATATCGAGA 60.128 38.462 0.00 0.00 34.50 4.04
2342 2391 7.295201 CGTTTCCAGTTTTGAAATATCGAGAA 58.705 34.615 0.00 0.00 34.50 2.87
2343 2392 7.962918 CGTTTCCAGTTTTGAAATATCGAGAAT 59.037 33.333 0.00 0.00 34.50 2.40
2360 2409 7.987268 TCGAGAATATATGTTGTCAACACTC 57.013 36.000 20.41 17.91 45.50 3.51
2361 2410 7.543756 TCGAGAATATATGTTGTCAACACTCA 58.456 34.615 20.41 9.39 45.50 3.41
2362 2411 8.032451 TCGAGAATATATGTTGTCAACACTCAA 58.968 33.333 20.41 4.63 45.50 3.02
2363 2412 8.110612 CGAGAATATATGTTGTCAACACTCAAC 58.889 37.037 20.41 10.54 45.50 3.18
2368 2417 3.407698 TGTTGTCAACACTCAACACTGT 58.592 40.909 14.48 0.00 45.50 3.55
2369 2418 3.435327 TGTTGTCAACACTCAACACTGTC 59.565 43.478 14.48 0.00 45.50 3.51
2370 2419 3.326836 TGTCAACACTCAACACTGTCA 57.673 42.857 0.00 0.00 0.00 3.58
2371 2420 3.872696 TGTCAACACTCAACACTGTCAT 58.127 40.909 0.00 0.00 0.00 3.06
2372 2421 4.260985 TGTCAACACTCAACACTGTCATT 58.739 39.130 0.00 0.00 0.00 2.57
2373 2422 4.699735 TGTCAACACTCAACACTGTCATTT 59.300 37.500 0.00 0.00 0.00 2.32
2374 2423 5.030295 GTCAACACTCAACACTGTCATTTG 58.970 41.667 0.00 0.00 0.00 2.32
2375 2424 4.940654 TCAACACTCAACACTGTCATTTGA 59.059 37.500 0.00 0.00 0.00 2.69
2376 2425 5.414144 TCAACACTCAACACTGTCATTTGAA 59.586 36.000 0.00 0.00 0.00 2.69
2377 2426 5.490139 ACACTCAACACTGTCATTTGAAG 57.510 39.130 0.00 0.00 0.00 3.02
2378 2427 4.336433 ACACTCAACACTGTCATTTGAAGG 59.664 41.667 0.00 0.00 0.00 3.46
2379 2428 4.336433 CACTCAACACTGTCATTTGAAGGT 59.664 41.667 0.00 0.00 0.00 3.50
2380 2429 4.949856 ACTCAACACTGTCATTTGAAGGTT 59.050 37.500 0.00 0.00 0.00 3.50
2381 2430 5.163622 ACTCAACACTGTCATTTGAAGGTTG 60.164 40.000 0.00 0.00 36.59 3.77
2382 2431 3.715628 ACACTGTCATTTGAAGGTTGC 57.284 42.857 0.00 0.00 0.00 4.17
2383 2432 2.362077 ACACTGTCATTTGAAGGTTGCC 59.638 45.455 0.00 0.00 0.00 4.52
2384 2433 2.624838 CACTGTCATTTGAAGGTTGCCT 59.375 45.455 0.00 0.00 33.87 4.75
2386 2435 4.278170 CACTGTCATTTGAAGGTTGCCTTA 59.722 41.667 0.00 0.00 44.82 2.69
2387 2436 4.520492 ACTGTCATTTGAAGGTTGCCTTAG 59.480 41.667 0.00 0.00 44.82 2.18
2388 2437 3.826157 TGTCATTTGAAGGTTGCCTTAGG 59.174 43.478 0.00 0.00 44.82 2.69
2399 2448 3.957288 GCCTTAGGCCTGAACAGAA 57.043 52.632 17.99 0.00 44.06 3.02
2400 2449 2.200373 GCCTTAGGCCTGAACAGAAA 57.800 50.000 17.99 0.00 44.06 2.52
2401 2450 2.728007 GCCTTAGGCCTGAACAGAAAT 58.272 47.619 17.99 0.00 44.06 2.17
2402 2451 2.424956 GCCTTAGGCCTGAACAGAAATG 59.575 50.000 17.99 0.00 44.06 2.32
2403 2452 2.424956 CCTTAGGCCTGAACAGAAATGC 59.575 50.000 17.99 0.00 0.00 3.56
2404 2453 2.128771 TAGGCCTGAACAGAAATGCC 57.871 50.000 17.99 10.34 39.17 4.40
2405 2454 0.407139 AGGCCTGAACAGAAATGCCT 59.593 50.000 3.11 13.65 44.08 4.75
2406 2455 1.203100 AGGCCTGAACAGAAATGCCTT 60.203 47.619 3.11 2.93 46.61 4.35
2407 2456 1.620323 GGCCTGAACAGAAATGCCTTT 59.380 47.619 0.00 0.00 35.99 3.11
2408 2457 2.611224 GGCCTGAACAGAAATGCCTTTG 60.611 50.000 0.00 0.00 35.99 2.77
2409 2458 2.036346 GCCTGAACAGAAATGCCTTTGT 59.964 45.455 3.19 0.00 0.00 2.83
2410 2459 3.493176 GCCTGAACAGAAATGCCTTTGTT 60.493 43.478 3.19 0.00 36.54 2.83
2411 2460 4.301628 CCTGAACAGAAATGCCTTTGTTC 58.698 43.478 10.59 10.59 45.88 3.18
2412 2461 4.038402 CCTGAACAGAAATGCCTTTGTTCT 59.962 41.667 15.70 1.37 45.87 3.01
2413 2462 5.241506 CCTGAACAGAAATGCCTTTGTTCTA 59.758 40.000 15.70 6.26 45.87 2.10
2414 2463 6.239008 CCTGAACAGAAATGCCTTTGTTCTAA 60.239 38.462 15.70 2.15 45.87 2.10
2415 2464 7.106439 TGAACAGAAATGCCTTTGTTCTAAA 57.894 32.000 15.70 0.09 45.87 1.85
2416 2465 7.551585 TGAACAGAAATGCCTTTGTTCTAAAA 58.448 30.769 15.70 0.00 45.87 1.52
2417 2466 8.203485 TGAACAGAAATGCCTTTGTTCTAAAAT 58.797 29.630 15.70 0.00 45.87 1.82
2418 2467 8.962884 AACAGAAATGCCTTTGTTCTAAAATT 57.037 26.923 0.00 0.00 30.50 1.82
2419 2468 8.369218 ACAGAAATGCCTTTGTTCTAAAATTG 57.631 30.769 0.00 0.00 30.50 2.32
2420 2469 8.203485 ACAGAAATGCCTTTGTTCTAAAATTGA 58.797 29.630 0.00 0.00 30.50 2.57
2421 2470 9.211485 CAGAAATGCCTTTGTTCTAAAATTGAT 57.789 29.630 0.00 0.00 30.50 2.57
2428 2477 9.249457 GCCTTTGTTCTAAAATTGATATTAGGC 57.751 33.333 0.00 0.00 31.49 3.93
2429 2478 9.450807 CCTTTGTTCTAAAATTGATATTAGGCG 57.549 33.333 0.00 0.00 31.49 5.52
2505 2577 1.332375 GCAATTTCGCGCTACCCATTA 59.668 47.619 5.56 0.00 0.00 1.90
2516 2588 4.637091 GCGCTACCCATTAAGGTTTAAGAA 59.363 41.667 0.00 0.00 41.58 2.52
2545 2617 6.183360 TGGATTCTAAGTAGATGTGCAGTCTC 60.183 42.308 4.89 0.00 31.40 3.36
2682 2771 3.701664 CCTTAGGCCCTGAACAGAAATT 58.298 45.455 0.00 0.00 0.00 1.82
2683 2772 4.855340 CCTTAGGCCCTGAACAGAAATTA 58.145 43.478 0.00 0.00 0.00 1.40
2738 2827 3.738982 TCATGACGTTGATGTTTCCTGT 58.261 40.909 0.00 0.00 0.00 4.00
2739 2828 4.133820 TCATGACGTTGATGTTTCCTGTT 58.866 39.130 0.00 0.00 0.00 3.16
2740 2829 4.578516 TCATGACGTTGATGTTTCCTGTTT 59.421 37.500 0.00 0.00 0.00 2.83
2741 2830 4.285807 TGACGTTGATGTTTCCTGTTTG 57.714 40.909 0.00 0.00 0.00 2.93
2742 2831 3.692101 TGACGTTGATGTTTCCTGTTTGT 59.308 39.130 0.00 0.00 0.00 2.83
2743 2832 4.156922 TGACGTTGATGTTTCCTGTTTGTT 59.843 37.500 0.00 0.00 0.00 2.83
2744 2833 5.066968 ACGTTGATGTTTCCTGTTTGTTT 57.933 34.783 0.00 0.00 0.00 2.83
2745 2834 5.099575 ACGTTGATGTTTCCTGTTTGTTTC 58.900 37.500 0.00 0.00 0.00 2.78
2746 2835 4.502645 CGTTGATGTTTCCTGTTTGTTTCC 59.497 41.667 0.00 0.00 0.00 3.13
2747 2836 4.300189 TGATGTTTCCTGTTTGTTTCCG 57.700 40.909 0.00 0.00 0.00 4.30
2748 2837 3.697045 TGATGTTTCCTGTTTGTTTCCGT 59.303 39.130 0.00 0.00 0.00 4.69
2749 2838 4.882427 TGATGTTTCCTGTTTGTTTCCGTA 59.118 37.500 0.00 0.00 0.00 4.02
2750 2839 5.357314 TGATGTTTCCTGTTTGTTTCCGTAA 59.643 36.000 0.00 0.00 0.00 3.18
2751 2840 5.640189 TGTTTCCTGTTTGTTTCCGTAAA 57.360 34.783 0.00 0.00 0.00 2.01
2752 2841 5.400703 TGTTTCCTGTTTGTTTCCGTAAAC 58.599 37.500 0.00 0.00 44.40 2.01
2764 2853 6.016213 GTTTCCGTAAACAAATACCATGGT 57.984 37.500 23.55 23.55 43.73 3.55
2765 2854 6.448852 GTTTCCGTAAACAAATACCATGGTT 58.551 36.000 25.38 8.28 43.73 3.67
2766 2855 6.651975 TTCCGTAAACAAATACCATGGTTT 57.348 33.333 25.38 13.21 37.28 3.27
2767 2856 6.256912 TCCGTAAACAAATACCATGGTTTC 57.743 37.500 25.38 0.00 35.33 2.78
2768 2857 6.005198 TCCGTAAACAAATACCATGGTTTCT 58.995 36.000 25.38 5.53 35.33 2.52
2769 2858 6.072397 TCCGTAAACAAATACCATGGTTTCTG 60.072 38.462 25.38 15.16 35.33 3.02
2770 2859 6.294286 CCGTAAACAAATACCATGGTTTCTGT 60.294 38.462 25.38 15.90 35.33 3.41
2771 2860 7.142680 CGTAAACAAATACCATGGTTTCTGTT 58.857 34.615 25.38 21.05 35.33 3.16
2772 2861 8.291032 CGTAAACAAATACCATGGTTTCTGTTA 58.709 33.333 25.38 11.88 35.33 2.41
2773 2862 9.620660 GTAAACAAATACCATGGTTTCTGTTAG 57.379 33.333 25.38 7.89 35.33 2.34
2774 2863 8.472007 AAACAAATACCATGGTTTCTGTTAGA 57.528 30.769 25.38 0.81 0.00 2.10
2775 2864 8.472007 AACAAATACCATGGTTTCTGTTAGAA 57.528 30.769 25.38 0.00 31.28 2.10
2776 2865 8.472007 ACAAATACCATGGTTTCTGTTAGAAA 57.528 30.769 25.38 0.00 41.51 2.52
2844 2975 7.652909 TGGTTGTTTGAATCATGATCTGTTTTC 59.347 33.333 9.06 3.07 0.00 2.29
3017 3160 8.971321 CATGTTCCACAGCTAATTTATAAATGC 58.029 33.333 11.42 11.14 0.00 3.56
3052 3195 5.104610 ACATGTCATTCTTAGCTCTCCATGT 60.105 40.000 0.00 0.00 36.49 3.21
3075 3218 1.635487 TGCTTTGCTATCCTGTTCCCT 59.365 47.619 0.00 0.00 0.00 4.20
3076 3219 2.843730 TGCTTTGCTATCCTGTTCCCTA 59.156 45.455 0.00 0.00 0.00 3.53
3088 3231 3.136626 CCTGTTCCCTAGGGTGGATTTAG 59.863 52.174 27.58 15.46 36.47 1.85
3179 4182 6.222038 ACGGAATAGCTTTCTCTCATTACA 57.778 37.500 0.00 0.00 0.00 2.41
3191 4194 6.519679 TCTCTCATTACAATTTTGCATGCT 57.480 33.333 20.33 0.00 0.00 3.79
3196 4199 1.431496 ACAATTTTGCATGCTTCGGC 58.569 45.000 20.33 0.00 42.19 5.54
3507 4533 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
3511 4537 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
3512 4538 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
3513 4539 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
3514 4540 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
3520 4546 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
3523 4549 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
3524 4550 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
3525 4551 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3526 4552 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
3527 4553 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3528 4554 6.406370 ACTCGTCCAAGAAATGAATGTATCA 58.594 36.000 0.00 0.00 43.67 2.15
3559 4604 7.353414 TCCATTTTTGTGACAAGTAATTCCA 57.647 32.000 0.00 0.00 0.00 3.53
3566 4611 4.273969 TGTGACAAGTAATTCCAAACGGAC 59.726 41.667 0.00 0.00 30.04 4.79
3567 4612 4.514066 GTGACAAGTAATTCCAAACGGACT 59.486 41.667 0.00 0.00 30.04 3.85
3568 4613 4.753107 TGACAAGTAATTCCAAACGGACTC 59.247 41.667 0.00 0.00 30.04 3.36
3569 4614 3.744426 ACAAGTAATTCCAAACGGACTCG 59.256 43.478 0.00 0.00 43.02 4.18
3698 4950 7.759489 TTTTGTTGAGTGAGGTAGCATTATT 57.241 32.000 0.00 0.00 0.00 1.40
3699 4951 7.759489 TTTGTTGAGTGAGGTAGCATTATTT 57.241 32.000 0.00 0.00 0.00 1.40
3833 5095 2.320367 GTACGTTGACTCTGCAGACTG 58.680 52.381 13.74 6.89 0.00 3.51
3892 5160 9.110502 GTGGTATGGGTATTTGTTTTTGAAAAA 57.889 29.630 0.00 0.00 0.00 1.94
3934 5202 2.044650 CTGCACCATCCCACCAGG 60.045 66.667 0.00 0.00 0.00 4.45
3998 5398 1.680338 AGCAACCTGAACTCACCAAC 58.320 50.000 0.00 0.00 0.00 3.77
4036 5436 5.615544 CGATAGCAACCTTCTGTTTTGTGAG 60.616 44.000 0.00 0.00 34.00 3.51
4453 5860 7.395489 ACATCTCAGTTCCTTTTTAGCATTGAT 59.605 33.333 0.00 0.00 0.00 2.57
4455 5862 6.942005 TCTCAGTTCCTTTTTAGCATTGATGA 59.058 34.615 0.00 0.00 0.00 2.92
4460 5867 9.045223 AGTTCCTTTTTAGCATTGATGAAAAAC 57.955 29.630 6.15 2.76 30.03 2.43
4461 5868 8.825745 GTTCCTTTTTAGCATTGATGAAAAACA 58.174 29.630 6.15 0.00 30.03 2.83
4462 5869 8.592105 TCCTTTTTAGCATTGATGAAAAACAG 57.408 30.769 6.15 0.11 30.03 3.16
4463 5870 7.171337 TCCTTTTTAGCATTGATGAAAAACAGC 59.829 33.333 6.15 0.00 35.25 4.40
4573 5983 3.284449 GGCTGCGTTTTCACCGGT 61.284 61.111 0.00 0.00 0.00 5.28
4591 6001 1.000506 GGTGAGTACGACAGGAAAGCA 59.999 52.381 0.00 0.00 0.00 3.91
4609 6019 1.835712 ACTGGACGAAACCCTCCGT 60.836 57.895 0.00 0.00 42.17 4.69
4646 6056 1.996191 GATCGTTGTCAAGCTGGAGAC 59.004 52.381 0.00 0.00 35.37 3.36
4698 6108 8.221251 TGTAATATCATACCAGACAGAGAGAGT 58.779 37.037 0.00 0.00 0.00 3.24
4783 6195 2.671963 GGGTTGGTTCCAGGTCGC 60.672 66.667 0.00 0.00 0.00 5.19
4784 6196 3.047877 GGTTGGTTCCAGGTCGCG 61.048 66.667 0.00 0.00 0.00 5.87
4785 6197 3.047877 GTTGGTTCCAGGTCGCGG 61.048 66.667 6.13 0.00 0.00 6.46
4788 6200 1.546589 TTGGTTCCAGGTCGCGGTAT 61.547 55.000 6.13 0.00 0.00 2.73
4792 6207 1.406539 GTTCCAGGTCGCGGTATTAGA 59.593 52.381 6.13 0.00 0.00 2.10
4839 6254 7.246311 CCTCAGTAATTGTGAATTGTGATCAC 58.754 38.462 19.27 19.27 45.82 3.06
4850 6265 8.361889 TGTGAATTGTGATCACTCATTTTGAAT 58.638 29.630 25.55 11.85 45.81 2.57
4933 7984 6.558009 AGAGTTTTTGTTTCCGTTTTACCTC 58.442 36.000 0.00 0.00 0.00 3.85
4971 8025 1.001378 GCCATCGCTGTTTTGTGACTT 60.001 47.619 0.00 0.00 0.00 3.01
4983 8037 6.167685 TGTTTTGTGACTTGTGTACTGTACT 58.832 36.000 17.98 0.00 0.00 2.73
5000 8054 3.322828 TGTACTCGGGACAGCTTAGTTTT 59.677 43.478 0.00 0.00 0.00 2.43
5013 8067 7.480810 ACAGCTTAGTTTTTCTAAACAAGTGG 58.519 34.615 0.00 0.00 44.88 4.00
5211 8322 2.428171 CGTCAGTTTTACCCGGATCCTA 59.572 50.000 10.75 0.00 0.00 2.94
5224 8335 3.005897 CCGGATCCTATGAATCGAACTGT 59.994 47.826 10.75 0.00 0.00 3.55
5227 8338 5.601662 GGATCCTATGAATCGAACTGTTCA 58.398 41.667 19.56 8.00 38.57 3.18
5228 8339 6.226787 GGATCCTATGAATCGAACTGTTCAT 58.773 40.000 19.56 14.52 44.67 2.57
5229 8340 6.708054 GGATCCTATGAATCGAACTGTTCATT 59.292 38.462 19.56 16.37 41.03 2.57
5230 8341 7.095439 GGATCCTATGAATCGAACTGTTCATTC 60.095 40.741 23.64 23.64 41.03 2.67
5231 8342 6.878317 TCCTATGAATCGAACTGTTCATTCT 58.122 36.000 26.79 20.20 41.03 2.40
5232 8343 6.980978 TCCTATGAATCGAACTGTTCATTCTC 59.019 38.462 26.79 17.06 41.03 2.87
5233 8344 6.758416 CCTATGAATCGAACTGTTCATTCTCA 59.242 38.462 26.79 20.23 41.03 3.27
5234 8345 7.440556 CCTATGAATCGAACTGTTCATTCTCAT 59.559 37.037 26.79 23.30 41.03 2.90
5235 8346 6.653273 TGAATCGAACTGTTCATTCTCATC 57.347 37.500 26.79 15.31 32.91 2.92
5236 8347 6.165577 TGAATCGAACTGTTCATTCTCATCA 58.834 36.000 26.79 16.83 32.91 3.07
5237 8348 6.650390 TGAATCGAACTGTTCATTCTCATCAA 59.350 34.615 26.79 14.86 32.91 2.57
5238 8349 7.335171 TGAATCGAACTGTTCATTCTCATCAAT 59.665 33.333 26.79 7.13 32.91 2.57
5239 8350 6.653273 TCGAACTGTTCATTCTCATCAATC 57.347 37.500 19.56 0.00 0.00 2.67
5240 8351 6.165577 TCGAACTGTTCATTCTCATCAATCA 58.834 36.000 19.56 0.00 0.00 2.57
5241 8352 6.650390 TCGAACTGTTCATTCTCATCAATCAA 59.350 34.615 19.56 0.00 0.00 2.57
5242 8353 6.959871 CGAACTGTTCATTCTCATCAATCAAG 59.040 38.462 19.56 0.00 0.00 3.02
5243 8354 7.360691 CGAACTGTTCATTCTCATCAATCAAGT 60.361 37.037 19.56 0.00 0.00 3.16
5244 8355 7.756395 ACTGTTCATTCTCATCAATCAAGTT 57.244 32.000 0.00 0.00 0.00 2.66
5245 8356 7.814642 ACTGTTCATTCTCATCAATCAAGTTC 58.185 34.615 0.00 0.00 0.00 3.01
5246 8357 7.446319 ACTGTTCATTCTCATCAATCAAGTTCA 59.554 33.333 0.00 0.00 0.00 3.18
5247 8358 8.168790 TGTTCATTCTCATCAATCAAGTTCAA 57.831 30.769 0.00 0.00 0.00 2.69
5248 8359 8.631797 TGTTCATTCTCATCAATCAAGTTCAAA 58.368 29.630 0.00 0.00 0.00 2.69
5249 8360 9.467258 GTTCATTCTCATCAATCAAGTTCAAAA 57.533 29.630 0.00 0.00 0.00 2.44
5251 8362 9.687210 TCATTCTCATCAATCAAGTTCAAAAAG 57.313 29.630 0.00 0.00 0.00 2.27
5252 8363 9.687210 CATTCTCATCAATCAAGTTCAAAAAGA 57.313 29.630 0.00 0.00 0.00 2.52
5281 8392 5.552178 ACTGTTCCTTCTCAAGTTCATACC 58.448 41.667 0.00 0.00 0.00 2.73
5282 8393 4.906618 TGTTCCTTCTCAAGTTCATACCC 58.093 43.478 0.00 0.00 0.00 3.69
5332 8443 1.665679 ACACAAGCACACGAACTGAAG 59.334 47.619 0.00 0.00 0.00 3.02
5408 8521 5.708230 ACACAACTACACAAGGAACTGAAAA 59.292 36.000 0.00 0.00 40.86 2.29
5574 8691 4.161295 TCCCTCGCCTTGCCATCG 62.161 66.667 0.00 0.00 0.00 3.84
5585 8702 3.211963 GCCATCGGCCCATCACAC 61.212 66.667 0.00 0.00 44.06 3.82
5586 8703 2.271821 CCATCGGCCCATCACACA 59.728 61.111 0.00 0.00 0.00 3.72
5587 8704 1.820906 CCATCGGCCCATCACACAG 60.821 63.158 0.00 0.00 0.00 3.66
5588 8705 2.124570 ATCGGCCCATCACACAGC 60.125 61.111 0.00 0.00 0.00 4.40
5589 8706 2.970379 ATCGGCCCATCACACAGCA 61.970 57.895 0.00 0.00 0.00 4.41
5590 8707 2.482796 ATCGGCCCATCACACAGCAA 62.483 55.000 0.00 0.00 0.00 3.91
5591 8708 2.964978 GGCCCATCACACAGCAAC 59.035 61.111 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.476202 GCAACTCCTAAAGTTTTTAAATCATGT 57.524 29.630 0.00 0.00 46.26 3.21
15 16 4.665833 GGTGGCAACTCCTAAAGTTTTT 57.334 40.909 0.00 0.00 46.26 1.94
48 49 2.785105 GCGCTACACGGCAACTACG 61.785 63.158 0.00 0.00 43.93 3.51
151 161 2.937591 CATGTCAGTTGCCATGTGTTC 58.062 47.619 0.00 0.00 34.97 3.18
199 210 4.101856 ACTACCCTGGTATGCTTGTAAGT 58.898 43.478 0.00 0.00 0.00 2.24
210 222 1.663911 ACATGGCAACTACCCTGGTA 58.336 50.000 0.00 0.00 37.61 3.25
213 225 1.559682 AGGTACATGGCAACTACCCTG 59.440 52.381 16.50 1.05 35.93 4.45
218 230 2.869101 TTGCAGGTACATGGCAACTA 57.131 45.000 9.91 0.00 42.12 2.24
250 263 0.754957 CCCACACCCAAAGCTGTCAA 60.755 55.000 0.00 0.00 0.00 3.18
338 353 1.237533 TAGCAGTTCGTCCACACGTA 58.762 50.000 0.00 0.00 46.76 3.57
431 447 2.580601 GGTGCCACGTAGGACTGGT 61.581 63.158 5.55 0.00 41.22 4.00
559 585 3.795877 CAATTTGCCTCCTCTCTCTCTC 58.204 50.000 0.00 0.00 0.00 3.20
560 586 2.093021 GCAATTTGCCTCCTCTCTCTCT 60.093 50.000 10.34 0.00 37.42 3.10
589 615 0.107654 CCGACTCATTCTTCCCACCC 60.108 60.000 0.00 0.00 0.00 4.61
801 842 1.074072 TTGGTGGATGGGTTCACGG 59.926 57.895 0.00 0.00 34.93 4.94
822 863 0.673022 GATGGCGGAGATGGATGCTC 60.673 60.000 0.00 0.00 0.00 4.26
861 902 1.666872 GTTTGAGGGTCGGTCCACG 60.667 63.158 0.00 0.00 46.11 4.94
863 904 0.471211 AGAGTTTGAGGGTCGGTCCA 60.471 55.000 0.00 0.00 38.11 4.02
867 908 1.014564 GCGAAGAGTTTGAGGGTCGG 61.015 60.000 0.00 0.00 0.00 4.79
874 915 1.374252 GAGCCCGCGAAGAGTTTGA 60.374 57.895 8.23 0.00 0.00 2.69
913 954 4.796495 GGGATTTGAGGCGGGCGT 62.796 66.667 0.00 0.00 0.00 5.68
1011 1059 4.039092 GCAAGCAGGGAGGAGGCA 62.039 66.667 0.00 0.00 0.00 4.75
1122 1170 1.066908 GTGAAGGATGAGCGAGAGGAG 59.933 57.143 0.00 0.00 0.00 3.69
1132 1180 1.667154 CGGAGCGGAGTGAAGGATGA 61.667 60.000 0.00 0.00 0.00 2.92
1227 1275 2.923035 ACCACCGTGGAGACCCTG 60.923 66.667 24.80 0.00 40.96 4.45
1230 1278 2.987547 TCGACCACCGTGGAGACC 60.988 66.667 24.80 8.87 40.96 3.85
1293 1341 4.405671 TCGGGCTCGTCGAGGAGT 62.406 66.667 29.77 0.00 36.41 3.85
1502 1550 4.086178 ACGCTCTCGACCGACACG 62.086 66.667 2.83 0.00 39.41 4.49
1561 1609 1.206371 ACGAGTAAACCCTGAATCCCG 59.794 52.381 0.00 0.00 0.00 5.14
1571 1619 4.313282 AGGAACTAAAGCACGAGTAAACC 58.687 43.478 0.00 0.00 36.02 3.27
1601 1649 5.178623 TCGCAACAAGTTAACTACATCCAAG 59.821 40.000 8.92 0.00 0.00 3.61
1602 1650 5.057819 TCGCAACAAGTTAACTACATCCAA 58.942 37.500 8.92 0.00 0.00 3.53
1610 1658 2.594529 CGCATCGCAACAAGTTAACT 57.405 45.000 1.12 1.12 0.00 2.24
1623 1671 2.433145 AGTGTGTCCTGCGCATCG 60.433 61.111 12.24 4.03 40.03 3.84
1627 1675 0.950555 TTCATCAGTGTGTCCTGCGC 60.951 55.000 0.00 0.00 32.32 6.09
1628 1676 1.073964 CTTCATCAGTGTGTCCTGCG 58.926 55.000 0.00 0.00 32.32 5.18
1683 1731 3.209429 CGCAACGAATGTGCATCTC 57.791 52.632 0.00 0.00 31.79 2.75
1713 1761 1.802636 GCACATGTCCCCAATGACG 59.197 57.895 0.00 0.00 38.11 4.35
1837 1886 3.432933 CACATTAGCACCAAACCAAATGC 59.567 43.478 0.00 0.00 38.39 3.56
1923 1972 3.305744 GCGCCAATTAAGTTCTTTCCCAA 60.306 43.478 0.00 0.00 0.00 4.12
1964 2013 4.160736 TGTCTCTGTGTCAATGAGTACG 57.839 45.455 0.00 0.00 0.00 3.67
2012 2061 1.291588 CTCAGCGACACCTGAAGCT 59.708 57.895 0.00 0.00 41.02 3.74
2045 2094 0.461961 AGGGTGCGTCTCTTATGAGC 59.538 55.000 0.72 0.00 40.03 4.26
2112 2161 7.970614 CCTAATATCAGTTTCAAAACCTGCTTC 59.029 37.037 2.08 0.00 39.71 3.86
2118 2167 6.190954 ACGCCTAATATCAGTTTCAAAACC 57.809 37.500 2.08 0.00 39.71 3.27
2143 2192 3.896648 AAATAACACTTGGTGACGCTG 57.103 42.857 4.62 0.00 36.96 5.18
2145 2194 4.217754 TCAAAATAACACTTGGTGACGC 57.782 40.909 4.62 0.00 36.96 5.19
2146 2195 8.073768 ACTAAATCAAAATAACACTTGGTGACG 58.926 33.333 4.62 0.00 36.96 4.35
2172 2221 9.273016 GCATGTCTTTACCTTGCTAATATCTTA 57.727 33.333 0.00 0.00 33.32 2.10
2173 2222 7.775093 TGCATGTCTTTACCTTGCTAATATCTT 59.225 33.333 0.00 0.00 35.72 2.40
2174 2223 7.282585 TGCATGTCTTTACCTTGCTAATATCT 58.717 34.615 0.00 0.00 35.72 1.98
2175 2224 7.496529 TGCATGTCTTTACCTTGCTAATATC 57.503 36.000 0.00 0.00 35.72 1.63
2176 2225 7.880160 TTGCATGTCTTTACCTTGCTAATAT 57.120 32.000 0.00 0.00 35.72 1.28
2177 2226 7.880160 ATTGCATGTCTTTACCTTGCTAATA 57.120 32.000 0.00 0.00 35.72 0.98
2178 2227 6.780457 ATTGCATGTCTTTACCTTGCTAAT 57.220 33.333 0.00 0.00 35.72 1.73
2179 2228 6.389091 CAATTGCATGTCTTTACCTTGCTAA 58.611 36.000 0.00 0.00 35.72 3.09
2180 2229 5.622007 GCAATTGCATGTCTTTACCTTGCTA 60.622 40.000 25.36 0.00 41.59 3.49
2181 2230 4.813027 CAATTGCATGTCTTTACCTTGCT 58.187 39.130 0.00 0.00 35.72 3.91
2182 2231 3.368843 GCAATTGCATGTCTTTACCTTGC 59.631 43.478 25.36 0.00 41.59 4.01
2197 2246 5.276963 GCAACCACATATGTAATGCAATTGC 60.277 40.000 23.69 23.69 36.99 3.56
2198 2247 6.019398 CAGCAACCACATATGTAATGCAATTG 60.019 38.462 27.49 18.90 36.99 2.32
2199 2248 6.044046 CAGCAACCACATATGTAATGCAATT 58.956 36.000 27.49 13.94 41.28 2.32
2200 2249 5.127519 ACAGCAACCACATATGTAATGCAAT 59.872 36.000 27.49 18.20 34.54 3.56
2201 2250 4.462132 ACAGCAACCACATATGTAATGCAA 59.538 37.500 27.49 0.00 34.54 4.08
2202 2251 4.015764 ACAGCAACCACATATGTAATGCA 58.984 39.130 27.49 0.00 34.54 3.96
2203 2252 4.637483 ACAGCAACCACATATGTAATGC 57.363 40.909 22.45 22.45 33.22 3.56
2204 2253 5.239306 CCCTACAGCAACCACATATGTAATG 59.761 44.000 8.32 8.92 0.00 1.90
2205 2254 5.376625 CCCTACAGCAACCACATATGTAAT 58.623 41.667 8.32 0.00 0.00 1.89
2206 2255 4.776349 CCCTACAGCAACCACATATGTAA 58.224 43.478 8.32 0.00 0.00 2.41
2207 2256 3.433031 GCCCTACAGCAACCACATATGTA 60.433 47.826 8.32 0.00 0.00 2.29
2208 2257 2.683742 GCCCTACAGCAACCACATATGT 60.684 50.000 1.41 1.41 0.00 2.29
2209 2258 1.949525 GCCCTACAGCAACCACATATG 59.050 52.381 0.00 0.00 0.00 1.78
2210 2259 1.475034 CGCCCTACAGCAACCACATAT 60.475 52.381 0.00 0.00 0.00 1.78
2211 2260 0.107897 CGCCCTACAGCAACCACATA 60.108 55.000 0.00 0.00 0.00 2.29
2212 2261 1.377202 CGCCCTACAGCAACCACAT 60.377 57.895 0.00 0.00 0.00 3.21
2213 2262 2.031919 CGCCCTACAGCAACCACA 59.968 61.111 0.00 0.00 0.00 4.17
2214 2263 0.320946 TAACGCCCTACAGCAACCAC 60.321 55.000 0.00 0.00 0.00 4.16
2215 2264 0.320946 GTAACGCCCTACAGCAACCA 60.321 55.000 0.00 0.00 0.00 3.67
2216 2265 0.036671 AGTAACGCCCTACAGCAACC 60.037 55.000 0.00 0.00 0.00 3.77
2217 2266 1.804601 AAGTAACGCCCTACAGCAAC 58.195 50.000 0.00 0.00 0.00 4.17
2218 2267 3.899052 ATAAGTAACGCCCTACAGCAA 57.101 42.857 0.00 0.00 0.00 3.91
2219 2268 3.196039 TCAATAAGTAACGCCCTACAGCA 59.804 43.478 0.00 0.00 0.00 4.41
2220 2269 3.788937 TCAATAAGTAACGCCCTACAGC 58.211 45.455 0.00 0.00 0.00 4.40
2221 2270 6.281405 AGAATCAATAAGTAACGCCCTACAG 58.719 40.000 0.00 0.00 0.00 2.74
2222 2271 6.229936 AGAATCAATAAGTAACGCCCTACA 57.770 37.500 0.00 0.00 0.00 2.74
2223 2272 7.924947 ACTTAGAATCAATAAGTAACGCCCTAC 59.075 37.037 0.00 0.00 40.74 3.18
2224 2273 8.015185 ACTTAGAATCAATAAGTAACGCCCTA 57.985 34.615 0.00 0.00 40.74 3.53
2225 2274 6.885922 ACTTAGAATCAATAAGTAACGCCCT 58.114 36.000 0.00 0.00 40.74 5.19
2226 2275 7.924947 ACTACTTAGAATCAATAAGTAACGCCC 59.075 37.037 6.93 0.00 42.31 6.13
2227 2276 8.868635 ACTACTTAGAATCAATAAGTAACGCC 57.131 34.615 6.93 0.00 42.31 5.68
2233 2282 9.155975 CTGCACAACTACTTAGAATCAATAAGT 57.844 33.333 4.04 4.04 43.89 2.24
2234 2283 9.155975 ACTGCACAACTACTTAGAATCAATAAG 57.844 33.333 0.00 0.00 36.51 1.73
2235 2284 9.151471 GACTGCACAACTACTTAGAATCAATAA 57.849 33.333 0.00 0.00 0.00 1.40
2236 2285 8.531982 AGACTGCACAACTACTTAGAATCAATA 58.468 33.333 0.00 0.00 0.00 1.90
2237 2286 7.390027 AGACTGCACAACTACTTAGAATCAAT 58.610 34.615 0.00 0.00 0.00 2.57
2238 2287 6.759272 AGACTGCACAACTACTTAGAATCAA 58.241 36.000 0.00 0.00 0.00 2.57
2239 2288 6.346477 AGACTGCACAACTACTTAGAATCA 57.654 37.500 0.00 0.00 0.00 2.57
2240 2289 8.934507 ATTAGACTGCACAACTACTTAGAATC 57.065 34.615 0.00 0.00 0.00 2.52
2241 2290 8.754080 AGATTAGACTGCACAACTACTTAGAAT 58.246 33.333 0.00 0.00 0.00 2.40
2242 2291 8.123639 AGATTAGACTGCACAACTACTTAGAA 57.876 34.615 0.00 0.00 0.00 2.10
2243 2292 7.704578 AGATTAGACTGCACAACTACTTAGA 57.295 36.000 0.00 0.00 0.00 2.10
2244 2293 7.815068 ACAAGATTAGACTGCACAACTACTTAG 59.185 37.037 0.00 0.00 0.00 2.18
2245 2294 7.667557 ACAAGATTAGACTGCACAACTACTTA 58.332 34.615 0.00 0.00 0.00 2.24
2246 2295 6.525629 ACAAGATTAGACTGCACAACTACTT 58.474 36.000 0.00 0.00 0.00 2.24
2247 2296 6.015010 AGACAAGATTAGACTGCACAACTACT 60.015 38.462 0.00 0.00 0.00 2.57
2248 2297 6.090088 CAGACAAGATTAGACTGCACAACTAC 59.910 42.308 0.00 0.00 0.00 2.73
2249 2298 6.159293 CAGACAAGATTAGACTGCACAACTA 58.841 40.000 0.00 0.00 0.00 2.24
2250 2299 4.993584 CAGACAAGATTAGACTGCACAACT 59.006 41.667 0.00 0.00 0.00 3.16
2251 2300 4.153117 CCAGACAAGATTAGACTGCACAAC 59.847 45.833 0.00 0.00 0.00 3.32
2252 2301 4.318332 CCAGACAAGATTAGACTGCACAA 58.682 43.478 0.00 0.00 0.00 3.33
2253 2302 3.306989 CCCAGACAAGATTAGACTGCACA 60.307 47.826 0.00 0.00 0.00 4.57
2254 2303 3.265791 CCCAGACAAGATTAGACTGCAC 58.734 50.000 0.00 0.00 0.00 4.57
2255 2304 2.237143 CCCCAGACAAGATTAGACTGCA 59.763 50.000 0.00 0.00 0.00 4.41
2256 2305 2.237392 ACCCCAGACAAGATTAGACTGC 59.763 50.000 0.00 0.00 0.00 4.40
2257 2306 4.559862 AACCCCAGACAAGATTAGACTG 57.440 45.455 0.00 0.00 0.00 3.51
2258 2307 5.584551 AAAACCCCAGACAAGATTAGACT 57.415 39.130 0.00 0.00 0.00 3.24
2259 2308 5.354513 GCTAAAACCCCAGACAAGATTAGAC 59.645 44.000 0.00 0.00 0.00 2.59
2260 2309 5.250774 AGCTAAAACCCCAGACAAGATTAGA 59.749 40.000 0.00 0.00 0.00 2.10
2261 2310 5.501156 AGCTAAAACCCCAGACAAGATTAG 58.499 41.667 0.00 0.00 0.00 1.73
2262 2311 5.013704 TGAGCTAAAACCCCAGACAAGATTA 59.986 40.000 0.00 0.00 0.00 1.75
2263 2312 4.202567 TGAGCTAAAACCCCAGACAAGATT 60.203 41.667 0.00 0.00 0.00 2.40
2264 2313 3.330701 TGAGCTAAAACCCCAGACAAGAT 59.669 43.478 0.00 0.00 0.00 2.40
2265 2314 2.708861 TGAGCTAAAACCCCAGACAAGA 59.291 45.455 0.00 0.00 0.00 3.02
2266 2315 3.140325 TGAGCTAAAACCCCAGACAAG 57.860 47.619 0.00 0.00 0.00 3.16
2267 2316 3.806949 ATGAGCTAAAACCCCAGACAA 57.193 42.857 0.00 0.00 0.00 3.18
2268 2317 5.450818 AATATGAGCTAAAACCCCAGACA 57.549 39.130 0.00 0.00 0.00 3.41
2269 2318 6.592870 ACTAATATGAGCTAAAACCCCAGAC 58.407 40.000 0.00 0.00 0.00 3.51
2270 2319 6.824958 ACTAATATGAGCTAAAACCCCAGA 57.175 37.500 0.00 0.00 0.00 3.86
2271 2320 8.375506 TCATACTAATATGAGCTAAAACCCCAG 58.624 37.037 0.00 0.00 41.91 4.45
2272 2321 8.154856 GTCATACTAATATGAGCTAAAACCCCA 58.845 37.037 0.00 0.00 46.31 4.96
2273 2322 8.376270 AGTCATACTAATATGAGCTAAAACCCC 58.624 37.037 0.00 0.00 46.31 4.95
2274 2323 9.780186 AAGTCATACTAATATGAGCTAAAACCC 57.220 33.333 0.00 0.00 46.31 4.11
2303 2352 6.752614 ACTGGAAACGGGCAAGGAAACTTA 62.753 45.833 0.00 0.00 46.14 2.24
2305 2354 4.671200 ACTGGAAACGGGCAAGGAAACT 62.671 50.000 0.00 0.00 42.73 2.66
2306 2355 0.313987 CTGGAAACGGGCAAGGAAAC 59.686 55.000 0.00 0.00 0.00 2.78
2307 2356 0.106419 ACTGGAAACGGGCAAGGAAA 60.106 50.000 0.00 0.00 42.76 3.13
2308 2357 0.106419 AACTGGAAACGGGCAAGGAA 60.106 50.000 0.00 0.00 42.76 3.36
2309 2358 0.106419 AAACTGGAAACGGGCAAGGA 60.106 50.000 0.00 0.00 42.76 3.36
2310 2359 0.750249 AAAACTGGAAACGGGCAAGG 59.250 50.000 0.00 0.00 42.76 3.61
2311 2360 1.407258 TCAAAACTGGAAACGGGCAAG 59.593 47.619 0.00 0.00 42.76 4.01
2312 2361 1.475403 TCAAAACTGGAAACGGGCAA 58.525 45.000 0.00 0.00 42.76 4.52
2313 2362 1.475403 TTCAAAACTGGAAACGGGCA 58.525 45.000 0.00 0.00 42.76 5.36
2314 2363 2.588027 TTTCAAAACTGGAAACGGGC 57.412 45.000 0.00 0.00 42.76 6.13
2315 2364 5.092781 CGATATTTCAAAACTGGAAACGGG 58.907 41.667 0.00 0.00 42.76 5.28
2316 2365 5.933790 TCGATATTTCAAAACTGGAAACGG 58.066 37.500 0.00 0.00 44.60 4.44
2317 2366 6.827641 TCTCGATATTTCAAAACTGGAAACG 58.172 36.000 0.00 0.00 37.10 3.60
2334 2383 9.678941 GAGTGTTGACAACATATATTCTCGATA 57.321 33.333 23.14 0.00 44.35 2.92
2335 2384 8.197439 TGAGTGTTGACAACATATATTCTCGAT 58.803 33.333 23.14 0.00 44.35 3.59
2336 2385 7.543756 TGAGTGTTGACAACATATATTCTCGA 58.456 34.615 23.14 11.45 44.35 4.04
2337 2386 7.755582 TGAGTGTTGACAACATATATTCTCG 57.244 36.000 23.14 0.00 44.35 4.04
2348 2397 3.435327 TGACAGTGTTGAGTGTTGACAAC 59.565 43.478 11.54 11.54 44.21 3.32
2349 2398 3.669536 TGACAGTGTTGAGTGTTGACAA 58.330 40.909 0.00 0.00 35.77 3.18
2350 2399 3.326836 TGACAGTGTTGAGTGTTGACA 57.673 42.857 0.00 0.00 35.77 3.58
2351 2400 4.882671 AATGACAGTGTTGAGTGTTGAC 57.117 40.909 0.00 0.00 35.77 3.18
2352 2401 4.940654 TCAAATGACAGTGTTGAGTGTTGA 59.059 37.500 0.00 0.00 35.77 3.18
2353 2402 5.233957 TCAAATGACAGTGTTGAGTGTTG 57.766 39.130 0.00 0.00 35.77 3.33
2354 2403 5.163622 CCTTCAAATGACAGTGTTGAGTGTT 60.164 40.000 0.00 0.00 35.77 3.32
2355 2404 4.336433 CCTTCAAATGACAGTGTTGAGTGT 59.664 41.667 0.00 0.00 38.54 3.55
2356 2405 4.336433 ACCTTCAAATGACAGTGTTGAGTG 59.664 41.667 0.00 0.00 33.10 3.51
2357 2406 4.526970 ACCTTCAAATGACAGTGTTGAGT 58.473 39.130 0.00 0.00 33.10 3.41
2358 2407 5.276270 CAACCTTCAAATGACAGTGTTGAG 58.724 41.667 0.00 0.00 35.13 3.02
2359 2408 4.439974 GCAACCTTCAAATGACAGTGTTGA 60.440 41.667 0.00 0.00 35.13 3.18
2360 2409 3.798337 GCAACCTTCAAATGACAGTGTTG 59.202 43.478 0.00 0.00 35.99 3.33
2361 2410 3.181476 GGCAACCTTCAAATGACAGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
2362 2411 2.362077 GGCAACCTTCAAATGACAGTGT 59.638 45.455 0.00 0.00 0.00 3.55
2363 2412 2.624838 AGGCAACCTTCAAATGACAGTG 59.375 45.455 0.00 0.00 37.17 3.66
2364 2413 2.949447 AGGCAACCTTCAAATGACAGT 58.051 42.857 0.00 0.00 37.17 3.55
2365 2414 4.082571 CCTAAGGCAACCTTCAAATGACAG 60.083 45.833 1.28 0.00 43.57 3.51
2366 2415 3.826157 CCTAAGGCAACCTTCAAATGACA 59.174 43.478 1.28 0.00 43.57 3.58
2367 2416 4.440839 CCTAAGGCAACCTTCAAATGAC 57.559 45.455 1.28 0.00 43.57 3.06
2382 2431 2.424956 GCATTTCTGTTCAGGCCTAAGG 59.575 50.000 3.98 0.00 0.00 2.69
2383 2432 2.424956 GGCATTTCTGTTCAGGCCTAAG 59.575 50.000 3.98 0.64 38.37 2.18
2384 2433 2.446435 GGCATTTCTGTTCAGGCCTAA 58.554 47.619 3.98 0.00 38.37 2.69
2385 2434 2.128771 GGCATTTCTGTTCAGGCCTA 57.871 50.000 3.98 0.00 38.37 3.93
2386 2435 0.407139 AGGCATTTCTGTTCAGGCCT 59.593 50.000 0.00 0.00 46.33 5.19
2387 2436 1.260544 AAGGCATTTCTGTTCAGGCC 58.739 50.000 0.00 0.00 41.65 5.19
2388 2437 2.036346 ACAAAGGCATTTCTGTTCAGGC 59.964 45.455 0.00 0.00 0.00 4.85
2389 2438 4.038402 AGAACAAAGGCATTTCTGTTCAGG 59.962 41.667 23.21 2.55 35.39 3.86
2390 2439 5.192327 AGAACAAAGGCATTTCTGTTCAG 57.808 39.130 23.21 3.18 35.39 3.02
2391 2440 6.707440 TTAGAACAAAGGCATTTCTGTTCA 57.293 33.333 23.21 11.56 35.39 3.18
2392 2441 8.593492 ATTTTAGAACAAAGGCATTTCTGTTC 57.407 30.769 16.90 16.90 34.15 3.18
2393 2442 8.829612 CAATTTTAGAACAAAGGCATTTCTGTT 58.170 29.630 1.05 1.05 31.93 3.16
2394 2443 8.203485 TCAATTTTAGAACAAAGGCATTTCTGT 58.797 29.630 0.00 0.00 31.93 3.41
2395 2444 8.592105 TCAATTTTAGAACAAAGGCATTTCTG 57.408 30.769 0.00 0.00 31.93 3.02
2402 2451 9.249457 GCCTAATATCAATTTTAGAACAAAGGC 57.751 33.333 0.00 0.00 35.91 4.35
2403 2452 9.450807 CGCCTAATATCAATTTTAGAACAAAGG 57.549 33.333 2.84 0.00 0.00 3.11
2413 2462 9.398538 TGGTACTTAACGCCTAATATCAATTTT 57.601 29.630 0.00 0.00 0.00 1.82
2414 2463 8.833493 GTGGTACTTAACGCCTAATATCAATTT 58.167 33.333 0.00 0.00 0.00 1.82
2415 2464 7.443272 GGTGGTACTTAACGCCTAATATCAATT 59.557 37.037 0.00 0.00 0.00 2.32
2416 2465 6.932960 GGTGGTACTTAACGCCTAATATCAAT 59.067 38.462 0.00 0.00 0.00 2.57
2417 2466 6.127111 TGGTGGTACTTAACGCCTAATATCAA 60.127 38.462 5.51 0.00 0.00 2.57
2418 2467 5.363292 TGGTGGTACTTAACGCCTAATATCA 59.637 40.000 5.51 0.00 0.00 2.15
2419 2468 5.846203 TGGTGGTACTTAACGCCTAATATC 58.154 41.667 5.51 0.00 0.00 1.63
2420 2469 5.874897 TGGTGGTACTTAACGCCTAATAT 57.125 39.130 5.51 0.00 0.00 1.28
2421 2470 5.674052 TTGGTGGTACTTAACGCCTAATA 57.326 39.130 5.51 0.00 0.00 0.98
2422 2471 4.556592 TTGGTGGTACTTAACGCCTAAT 57.443 40.909 5.51 0.00 0.00 1.73
2423 2472 4.556592 ATTGGTGGTACTTAACGCCTAA 57.443 40.909 5.51 0.00 0.00 2.69
2424 2473 4.556592 AATTGGTGGTACTTAACGCCTA 57.443 40.909 5.51 0.00 0.00 3.93
2425 2474 3.428413 AATTGGTGGTACTTAACGCCT 57.572 42.857 5.51 0.00 0.00 5.52
2426 2475 4.508461 AAAATTGGTGGTACTTAACGCC 57.492 40.909 0.00 0.00 0.00 5.68
2427 2476 6.245115 AGTAAAATTGGTGGTACTTAACGC 57.755 37.500 0.00 0.00 0.00 4.84
2428 2477 8.344098 TCAAAGTAAAATTGGTGGTACTTAACG 58.656 33.333 0.00 0.00 36.11 3.18
2471 2520 3.720920 CGAAATTGCACGTCTTTACCTCG 60.721 47.826 0.00 0.00 0.00 4.63
2516 2588 6.653020 TGCACATCTACTTAGAATCCACAAT 58.347 36.000 0.00 0.00 35.69 2.71
2597 2685 7.065120 TGCTCCAAATATTTCAATAATGGGG 57.935 36.000 0.00 10.47 36.36 4.96
2628 2716 3.546020 CCATGAAACGACAGTGTTGACAC 60.546 47.826 17.72 6.15 46.77 3.67
2683 2772 9.301153 GCAGATCACCGAATAATTAAACAAAAT 57.699 29.630 0.00 0.00 0.00 1.82
2741 2830 6.016213 ACCATGGTATTTGTTTACGGAAAC 57.984 37.500 18.10 16.63 44.48 2.78
2742 2831 6.651975 AACCATGGTATTTGTTTACGGAAA 57.348 33.333 20.12 0.00 0.00 3.13
2743 2832 6.490721 AGAAACCATGGTATTTGTTTACGGAA 59.509 34.615 20.12 0.00 31.51 4.30
2744 2833 6.005198 AGAAACCATGGTATTTGTTTACGGA 58.995 36.000 20.12 0.00 31.51 4.69
2745 2834 6.090129 CAGAAACCATGGTATTTGTTTACGG 58.910 40.000 20.12 0.00 31.51 4.02
2746 2835 6.674066 ACAGAAACCATGGTATTTGTTTACG 58.326 36.000 20.12 4.74 31.51 3.18
2747 2836 9.620660 CTAACAGAAACCATGGTATTTGTTTAC 57.379 33.333 29.89 12.74 31.51 2.01
2748 2837 9.575868 TCTAACAGAAACCATGGTATTTGTTTA 57.424 29.630 29.89 21.24 31.51 2.01
2749 2838 8.472007 TCTAACAGAAACCATGGTATTTGTTT 57.528 30.769 29.89 17.81 33.87 2.83
2750 2839 8.472007 TTCTAACAGAAACCATGGTATTTGTT 57.528 30.769 28.70 28.70 29.99 2.83
2751 2840 8.472007 TTTCTAACAGAAACCATGGTATTTGT 57.528 30.769 20.12 18.53 39.13 2.83
2752 2841 9.927668 AATTTCTAACAGAAACCATGGTATTTG 57.072 29.630 20.12 17.89 45.83 2.32
2753 2842 9.927668 CAATTTCTAACAGAAACCATGGTATTT 57.072 29.630 20.12 10.04 45.83 1.40
2754 2843 9.308000 TCAATTTCTAACAGAAACCATGGTATT 57.692 29.630 20.12 14.46 45.83 1.89
2755 2844 8.877864 TCAATTTCTAACAGAAACCATGGTAT 57.122 30.769 20.12 4.39 45.83 2.73
2756 2845 7.942341 ACTCAATTTCTAACAGAAACCATGGTA 59.058 33.333 20.12 0.00 45.83 3.25
2757 2846 6.777580 ACTCAATTTCTAACAGAAACCATGGT 59.222 34.615 13.00 13.00 45.83 3.55
2758 2847 7.086376 CACTCAATTTCTAACAGAAACCATGG 58.914 38.462 11.19 11.19 45.83 3.66
2759 2848 6.583806 GCACTCAATTTCTAACAGAAACCATG 59.416 38.462 3.58 4.63 45.83 3.66
2760 2849 6.294731 GGCACTCAATTTCTAACAGAAACCAT 60.295 38.462 3.58 0.00 45.83 3.55
2761 2850 5.009610 GGCACTCAATTTCTAACAGAAACCA 59.990 40.000 3.58 0.00 45.83 3.67
2762 2851 5.461526 GGCACTCAATTTCTAACAGAAACC 58.538 41.667 3.58 0.00 45.83 3.27
2763 2852 5.461526 GGGCACTCAATTTCTAACAGAAAC 58.538 41.667 3.58 0.00 45.83 2.78
2764 2853 4.522789 GGGGCACTCAATTTCTAACAGAAA 59.477 41.667 3.97 3.97 46.89 2.52
2765 2854 4.079253 GGGGCACTCAATTTCTAACAGAA 58.921 43.478 0.00 0.00 31.28 3.02
2766 2855 3.561313 GGGGGCACTCAATTTCTAACAGA 60.561 47.826 0.00 0.00 0.00 3.41
2767 2856 2.755103 GGGGGCACTCAATTTCTAACAG 59.245 50.000 0.00 0.00 0.00 3.16
2768 2857 2.378547 AGGGGGCACTCAATTTCTAACA 59.621 45.455 0.00 0.00 0.00 2.41
2769 2858 3.087370 AGGGGGCACTCAATTTCTAAC 57.913 47.619 0.00 0.00 0.00 2.34
2770 2859 3.825908 AAGGGGGCACTCAATTTCTAA 57.174 42.857 0.00 0.00 0.00 2.10
2771 2860 3.430453 CAAAGGGGGCACTCAATTTCTA 58.570 45.455 0.00 0.00 0.00 2.10
2772 2861 2.250924 CAAAGGGGGCACTCAATTTCT 58.749 47.619 0.00 0.00 0.00 2.52
2773 2862 1.338105 GCAAAGGGGGCACTCAATTTC 60.338 52.381 0.00 0.00 0.00 2.17
2774 2863 0.686789 GCAAAGGGGGCACTCAATTT 59.313 50.000 0.00 0.00 0.00 1.82
2775 2864 0.471591 TGCAAAGGGGGCACTCAATT 60.472 50.000 0.00 0.00 36.11 2.32
2776 2865 0.252375 ATGCAAAGGGGGCACTCAAT 60.252 50.000 0.00 0.00 45.23 2.57
2934 3077 5.447818 GCAGTATGGCATTTCAGACAGTAAC 60.448 44.000 4.78 0.00 35.86 2.50
2935 3078 4.635765 GCAGTATGGCATTTCAGACAGTAA 59.364 41.667 4.78 0.00 35.86 2.24
2936 3079 4.080919 AGCAGTATGGCATTTCAGACAGTA 60.081 41.667 4.78 0.00 35.86 2.74
2938 3081 3.276857 AGCAGTATGGCATTTCAGACAG 58.723 45.455 4.78 0.00 35.86 3.51
3052 3195 3.258123 GGGAACAGGATAGCAAAGCAAAA 59.742 43.478 0.00 0.00 0.00 2.44
3075 3218 5.087923 TGGCTCTATCTAAATCCACCCTA 57.912 43.478 0.00 0.00 0.00 3.53
3076 3219 3.941629 TGGCTCTATCTAAATCCACCCT 58.058 45.455 0.00 0.00 0.00 4.34
3088 3231 8.270744 AGAATGGAATGGTTATATGGCTCTATC 58.729 37.037 0.00 0.00 0.00 2.08
3179 4182 0.243365 TCGCCGAAGCATGCAAAATT 59.757 45.000 21.98 4.83 39.83 1.82
3191 4194 5.811399 ATTTGAATTAAGACATCGCCGAA 57.189 34.783 0.00 0.00 0.00 4.30
3389 4415 8.408601 ACCATCATAATGCAAGACAGATAAAAC 58.591 33.333 0.00 0.00 0.00 2.43
3526 4552 9.829507 ACTTGTCACAAAAATGGATAAAAATGA 57.170 25.926 0.00 0.00 0.00 2.57
3532 4558 9.921637 GGAATTACTTGTCACAAAAATGGATAA 57.078 29.630 0.00 0.00 0.00 1.75
3542 4587 4.882427 TCCGTTTGGAATTACTTGTCACAA 59.118 37.500 0.00 0.00 42.85 3.33
3543 4588 4.452825 TCCGTTTGGAATTACTTGTCACA 58.547 39.130 0.00 0.00 42.85 3.58
3637 4879 8.017373 CAGATCACAATGAAAAGTATTTGACGT 58.983 33.333 0.00 0.00 39.02 4.34
3638 4880 8.017373 ACAGATCACAATGAAAAGTATTTGACG 58.983 33.333 0.00 0.00 39.02 4.35
3797 5051 7.758528 AGTCAACGTACCATATAGACAAAGAAC 59.241 37.037 0.00 0.00 0.00 3.01
3850 5112 7.446013 ACCCATACCACAAATATACCATTAACG 59.554 37.037 0.00 0.00 0.00 3.18
3854 5116 9.890915 AAATACCCATACCACAAATATACCATT 57.109 29.630 0.00 0.00 0.00 3.16
3917 5185 1.561769 TACCTGGTGGGATGGTGCAG 61.562 60.000 10.23 0.00 38.76 4.41
3966 5366 4.517285 TCAGGTTGCTTATTTCCTGCTAG 58.483 43.478 5.33 0.00 44.76 3.42
4012 5412 4.213270 TCACAAAACAGAAGGTTGCTATCG 59.787 41.667 0.00 0.00 40.35 2.92
4046 5446 8.634475 TGAAACGATTAATGATCAGTGAGTAG 57.366 34.615 5.80 0.00 34.23 2.57
4131 5531 1.225376 TTACCGTTCCAGCAGCAACG 61.225 55.000 9.05 9.05 44.02 4.10
4453 5860 7.818930 GGAATCAATCATTAAGGCTGTTTTTCA 59.181 33.333 0.00 0.00 0.00 2.69
4455 5862 7.910584 AGGAATCAATCATTAAGGCTGTTTTT 58.089 30.769 0.00 0.00 0.00 1.94
4460 5867 5.163488 TGCAAGGAATCAATCATTAAGGCTG 60.163 40.000 0.00 0.00 29.32 4.85
4461 5868 4.957954 TGCAAGGAATCAATCATTAAGGCT 59.042 37.500 0.00 0.00 29.32 4.58
4462 5869 5.266733 TGCAAGGAATCAATCATTAAGGC 57.733 39.130 0.00 0.00 29.32 4.35
4463 5870 6.220930 CCATGCAAGGAATCAATCATTAAGG 58.779 40.000 0.35 0.00 29.32 2.69
4573 5983 1.961394 AGTGCTTTCCTGTCGTACTCA 59.039 47.619 0.00 0.00 0.00 3.41
4591 6001 1.835712 ACGGAGGGTTTCGTCCAGT 60.836 57.895 6.04 2.65 45.55 4.00
4609 6019 0.599991 ATCAGTTGTCGCAGAACGCA 60.600 50.000 0.00 0.00 42.60 5.24
4684 6094 2.749076 CACTCTCACTCTCTCTGTCTGG 59.251 54.545 0.00 0.00 0.00 3.86
4743 6155 4.152402 CCTTACCGCATTCCATTATTCTCG 59.848 45.833 0.00 0.00 0.00 4.04
4783 6195 6.485313 TGCCCTACAATGAATTTCTAATACCG 59.515 38.462 0.00 0.00 0.00 4.02
4784 6196 7.817418 TGCCCTACAATGAATTTCTAATACC 57.183 36.000 0.00 0.00 0.00 2.73
4785 6197 9.066892 TGATGCCCTACAATGAATTTCTAATAC 57.933 33.333 0.00 0.00 0.00 1.89
4788 6200 7.470424 GCATGATGCCCTACAATGAATTTCTAA 60.470 37.037 6.04 0.00 37.42 2.10
4792 6207 4.952460 GCATGATGCCCTACAATGAATTT 58.048 39.130 6.04 0.00 37.42 1.82
4850 6265 8.408043 ACAATGAAGTGGAATGAATTCTGTTA 57.592 30.769 7.05 0.00 37.00 2.41
4862 7913 3.754965 CAAGGGAGACAATGAAGTGGAA 58.245 45.455 0.00 0.00 0.00 3.53
4863 7914 2.553028 GCAAGGGAGACAATGAAGTGGA 60.553 50.000 0.00 0.00 0.00 4.02
4864 7915 1.815003 GCAAGGGAGACAATGAAGTGG 59.185 52.381 0.00 0.00 0.00 4.00
4922 7973 4.457949 AGGTTTATTGCTGAGGTAAAACGG 59.542 41.667 0.00 0.00 31.91 4.44
4933 7984 2.288948 TGGCTTTGCAGGTTTATTGCTG 60.289 45.455 0.00 0.00 42.02 4.41
4971 8025 2.156917 CTGTCCCGAGTACAGTACACA 58.843 52.381 13.37 7.01 39.61 3.72
4983 8037 3.764237 AGAAAAACTAAGCTGTCCCGA 57.236 42.857 0.00 0.00 0.00 5.14
5000 8054 5.001232 GCACCATCTACCACTTGTTTAGAA 58.999 41.667 0.00 0.00 0.00 2.10
5013 8067 0.744414 ACGCCATGTGCACCATCTAC 60.744 55.000 15.69 0.00 41.33 2.59
5061 8132 1.005340 CTGCAGCAACTCCGAATCTC 58.995 55.000 0.00 0.00 0.00 2.75
5211 8322 6.820152 TGATGAGAATGAACAGTTCGATTCAT 59.180 34.615 24.87 20.89 45.36 2.57
5234 8345 9.927668 AGTTCTTTTCTTTTTGAACTTGATTGA 57.072 25.926 0.00 0.00 44.32 2.57
5235 8346 9.962759 CAGTTCTTTTCTTTTTGAACTTGATTG 57.037 29.630 0.00 0.00 44.32 2.67
5236 8347 9.710900 ACAGTTCTTTTCTTTTTGAACTTGATT 57.289 25.926 0.00 0.00 44.32 2.57
5237 8348 9.710900 AACAGTTCTTTTCTTTTTGAACTTGAT 57.289 25.926 0.00 0.00 44.32 2.57
5238 8349 9.191995 GAACAGTTCTTTTCTTTTTGAACTTGA 57.808 29.630 6.00 0.00 44.32 3.02
5239 8350 8.435430 GGAACAGTTCTTTTCTTTTTGAACTTG 58.565 33.333 13.13 0.00 44.32 3.16
5240 8351 8.367911 AGGAACAGTTCTTTTCTTTTTGAACTT 58.632 29.630 13.13 0.00 44.32 2.66
5241 8352 7.896811 AGGAACAGTTCTTTTCTTTTTGAACT 58.103 30.769 13.13 0.00 46.63 3.01
5242 8353 8.534333 AAGGAACAGTTCTTTTCTTTTTGAAC 57.466 30.769 13.13 0.00 39.06 3.18
5243 8354 8.585018 AGAAGGAACAGTTCTTTTCTTTTTGAA 58.415 29.630 19.48 0.00 33.20 2.69
5244 8355 8.122472 AGAAGGAACAGTTCTTTTCTTTTTGA 57.878 30.769 19.48 0.00 33.20 2.69
5245 8356 8.028938 TGAGAAGGAACAGTTCTTTTCTTTTTG 58.971 33.333 23.07 0.00 35.38 2.44
5246 8357 8.122472 TGAGAAGGAACAGTTCTTTTCTTTTT 57.878 30.769 23.07 10.35 35.38 1.94
5247 8358 7.703058 TGAGAAGGAACAGTTCTTTTCTTTT 57.297 32.000 23.07 11.49 35.38 2.27
5248 8359 7.394641 ACTTGAGAAGGAACAGTTCTTTTCTTT 59.605 33.333 23.07 11.06 35.38 2.52
5249 8360 6.887002 ACTTGAGAAGGAACAGTTCTTTTCTT 59.113 34.615 23.07 14.76 35.38 2.52
5250 8361 6.418946 ACTTGAGAAGGAACAGTTCTTTTCT 58.581 36.000 22.71 22.71 36.77 2.52
5251 8362 6.685527 ACTTGAGAAGGAACAGTTCTTTTC 57.314 37.500 11.69 14.75 34.30 2.29
5252 8363 6.659242 TGAACTTGAGAAGGAACAGTTCTTTT 59.341 34.615 11.69 7.53 34.30 2.27
5253 8364 6.180472 TGAACTTGAGAAGGAACAGTTCTTT 58.820 36.000 10.31 10.31 34.30 2.52
5254 8365 5.745227 TGAACTTGAGAAGGAACAGTTCTT 58.255 37.500 13.13 2.30 34.30 2.52
5255 8366 5.359194 TGAACTTGAGAAGGAACAGTTCT 57.641 39.130 13.13 0.00 36.95 3.01
5256 8367 6.147985 GGTATGAACTTGAGAAGGAACAGTTC 59.852 42.308 4.52 4.52 35.94 3.01
5257 8368 5.998363 GGTATGAACTTGAGAAGGAACAGTT 59.002 40.000 0.00 0.00 0.00 3.16
5258 8369 5.513267 GGGTATGAACTTGAGAAGGAACAGT 60.513 44.000 0.00 0.00 0.00 3.55
5281 8392 4.034048 CAGAAATTACGTCCAGATTTCGGG 59.966 45.833 15.06 10.76 42.00 5.14
5282 8393 4.494199 GCAGAAATTACGTCCAGATTTCGG 60.494 45.833 15.46 15.46 42.00 4.30
5433 8549 7.510549 AACAACAATGTACTAATGCAGTCTT 57.489 32.000 0.00 0.00 39.40 3.01
5434 8550 7.659799 TGTAACAACAATGTACTAATGCAGTCT 59.340 33.333 0.00 0.00 39.40 3.24
5435 8551 7.802738 TGTAACAACAATGTACTAATGCAGTC 58.197 34.615 0.00 0.00 39.40 3.51
5443 8559 5.047872 TCCGAGCTGTAACAACAATGTACTA 60.048 40.000 0.00 0.00 39.40 1.82
5475 8591 2.096248 GAGACAGAATCCTGACGAGGT 58.904 52.381 0.00 0.00 43.02 3.85
5531 8648 2.289444 CGGATGGATGTAGCCCGTTTAT 60.289 50.000 0.00 0.00 35.83 1.40
5532 8649 1.069513 CGGATGGATGTAGCCCGTTTA 59.930 52.381 0.00 0.00 35.83 2.01
5533 8650 0.179056 CGGATGGATGTAGCCCGTTT 60.179 55.000 0.00 0.00 35.83 3.60
5574 8691 1.870055 CTGTTGCTGTGTGATGGGCC 61.870 60.000 0.00 0.00 0.00 5.80
5578 8695 0.386858 GCTGCTGTTGCTGTGTGATG 60.387 55.000 0.00 0.00 39.81 3.07
5579 8696 1.848932 CGCTGCTGTTGCTGTGTGAT 61.849 55.000 0.00 0.00 41.59 3.06
5581 8698 2.051614 CGCTGCTGTTGCTGTGTG 60.052 61.111 0.00 0.00 41.59 3.82
5582 8699 3.282157 CCGCTGCTGTTGCTGTGT 61.282 61.111 0.00 0.00 43.86 3.72
5583 8700 3.282157 ACCGCTGCTGTTGCTGTG 61.282 61.111 0.00 0.00 44.59 3.66
5584 8701 3.282157 CACCGCTGCTGTTGCTGT 61.282 61.111 0.00 0.00 39.81 4.40
5585 8702 4.034258 CCACCGCTGCTGTTGCTG 62.034 66.667 0.00 0.00 40.48 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.