Multiple sequence alignment - TraesCS5D01G336000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G336000 chr5D 100.000 6123 0 0 1 6123 425646566 425652688 0.000000e+00 11308.0
1 TraesCS5D01G336000 chr5D 83.624 287 34 8 5833 6117 425717300 425717575 2.190000e-64 257.0
2 TraesCS5D01G336000 chr5A 93.006 2788 98 32 3015 5771 539943405 539946126 0.000000e+00 3978.0
3 TraesCS5D01G336000 chr5A 96.491 342 8 3 5786 6123 539946195 539946536 4.140000e-156 562.0
4 TraesCS5D01G336000 chr5A 80.882 340 43 11 5781 6105 539956800 539957132 1.320000e-61 248.0
5 TraesCS5D01G336000 chr5A 90.435 115 7 3 10 124 439430355 439430245 1.380000e-31 148.0
6 TraesCS5D01G336000 chr5B 90.175 1832 78 34 3477 5272 514851838 514853603 0.000000e+00 2292.0
7 TraesCS5D01G336000 chr5B 94.822 985 42 7 2241 3220 514850659 514851639 0.000000e+00 1528.0
8 TraesCS5D01G336000 chr5B 94.558 882 21 9 1367 2225 514849799 514850676 0.000000e+00 1338.0
9 TraesCS5D01G336000 chr5B 93.236 887 24 15 500 1363 514848520 514849393 0.000000e+00 1273.0
10 TraesCS5D01G336000 chr5B 90.714 280 23 2 5838 6115 514853604 514853882 2.700000e-98 370.0
11 TraesCS5D01G336000 chr5B 85.714 294 16 16 132 407 514840885 514841170 2.790000e-73 287.0
12 TraesCS5D01G336000 chr5B 82.578 287 37 8 5833 6117 514928652 514928927 2.210000e-59 241.0
13 TraesCS5D01G336000 chr5B 89.655 58 1 1 398 455 514848450 514848502 1.100000e-07 69.4
14 TraesCS5D01G336000 chr2D 92.951 1064 55 14 2261 3315 302987214 302988266 0.000000e+00 1531.0
15 TraesCS5D01G336000 chr3A 92.204 962 50 15 2571 3525 740073311 740074254 0.000000e+00 1338.0
16 TraesCS5D01G336000 chr3A 91.743 109 5 1 10 118 14208992 14209096 1.380000e-31 148.0
17 TraesCS5D01G336000 chr7B 91.277 963 58 15 2571 3525 173306422 173307366 0.000000e+00 1290.0
18 TraesCS5D01G336000 chr1A 92.272 867 50 13 2571 3430 99536695 99537551 0.000000e+00 1214.0
19 TraesCS5D01G336000 chr6A 92.042 867 51 12 2571 3430 132059233 132060088 0.000000e+00 1203.0
20 TraesCS5D01G336000 chr7A 92.042 867 50 15 2571 3430 480549412 480548558 0.000000e+00 1201.0
21 TraesCS5D01G336000 chr2B 88.565 927 73 24 2571 3491 346295164 346294265 0.000000e+00 1094.0
22 TraesCS5D01G336000 chr2B 91.818 110 4 2 10 119 467863168 467863064 1.380000e-31 148.0
23 TraesCS5D01G336000 chr3B 90.987 821 58 11 2571 3384 173619883 173619072 0.000000e+00 1092.0
24 TraesCS5D01G336000 chr3B 91.071 112 6 1 10 121 682216001 682216108 1.380000e-31 148.0
25 TraesCS5D01G336000 chr3B 90.991 111 6 1 10 120 682160533 682160639 4.950000e-31 147.0
26 TraesCS5D01G336000 chr3B 90.351 114 3 1 3378 3491 173614777 173614672 6.400000e-30 143.0
27 TraesCS5D01G336000 chrUn 94.549 587 21 3 2942 3525 11556375 11556953 0.000000e+00 896.0
28 TraesCS5D01G336000 chr7D 91.071 112 5 2 10 120 544465461 544465354 4.950000e-31 147.0
29 TraesCS5D01G336000 chr6D 91.071 112 5 2 10 121 103572065 103572171 4.950000e-31 147.0
30 TraesCS5D01G336000 chr4D 87.903 124 10 4 10 132 138855080 138854961 2.300000e-29 141.0
31 TraesCS5D01G336000 chr4B 90.741 108 6 2 10 117 188648631 188648734 2.300000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G336000 chr5D 425646566 425652688 6122 False 11308.000000 11308 100.000000 1 6123 1 chr5D.!!$F1 6122
1 TraesCS5D01G336000 chr5A 539943405 539946536 3131 False 2270.000000 3978 94.748500 3015 6123 2 chr5A.!!$F2 3108
2 TraesCS5D01G336000 chr5B 514848450 514853882 5432 False 1145.066667 2292 92.193333 398 6115 6 chr5B.!!$F3 5717
3 TraesCS5D01G336000 chr2D 302987214 302988266 1052 False 1531.000000 1531 92.951000 2261 3315 1 chr2D.!!$F1 1054
4 TraesCS5D01G336000 chr3A 740073311 740074254 943 False 1338.000000 1338 92.204000 2571 3525 1 chr3A.!!$F2 954
5 TraesCS5D01G336000 chr7B 173306422 173307366 944 False 1290.000000 1290 91.277000 2571 3525 1 chr7B.!!$F1 954
6 TraesCS5D01G336000 chr1A 99536695 99537551 856 False 1214.000000 1214 92.272000 2571 3430 1 chr1A.!!$F1 859
7 TraesCS5D01G336000 chr6A 132059233 132060088 855 False 1203.000000 1203 92.042000 2571 3430 1 chr6A.!!$F1 859
8 TraesCS5D01G336000 chr7A 480548558 480549412 854 True 1201.000000 1201 92.042000 2571 3430 1 chr7A.!!$R1 859
9 TraesCS5D01G336000 chr2B 346294265 346295164 899 True 1094.000000 1094 88.565000 2571 3491 1 chr2B.!!$R1 920
10 TraesCS5D01G336000 chr3B 173619072 173619883 811 True 1092.000000 1092 90.987000 2571 3384 1 chr3B.!!$R2 813
11 TraesCS5D01G336000 chrUn 11556375 11556953 578 False 896.000000 896 94.549000 2942 3525 1 chrUn.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 0.028110 GATCGCGGGCATTGAAACTC 59.972 55.0 6.13 0.0 0.00 3.01 F
421 422 0.033366 AGCGGCAATCAAACCAAACC 59.967 50.0 1.45 0.0 0.00 3.27 F
906 921 0.040425 GCAACAACGGTTACTGCCTG 60.040 55.0 12.85 0.0 34.87 4.85 F
2254 2703 0.530870 GTAGGTGAGCAGGCGGATTC 60.531 60.0 0.00 0.0 0.00 2.52 F
3058 3518 0.033109 TGGAGATGGAGAGCCTCGAA 60.033 55.0 0.00 0.0 34.31 3.71 F
3711 4218 0.107214 GGCAATGGTGGCTGTAGCTA 60.107 55.0 3.63 0.0 46.62 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2702 0.040514 CAAGCCGTGCATTTCGTTGA 60.041 50.000 0.00 0.0 0.00 3.18 R
2291 2740 0.251341 AAGCCACTCATTCACCCACC 60.251 55.000 0.00 0.0 0.00 4.61 R
2408 2860 2.603171 AACCAATTGCCACCCCGG 60.603 61.111 0.00 0.0 38.11 5.73 R
3472 3956 0.320073 CAGTGCCAAGGGTGCATTTG 60.320 55.000 0.00 0.0 41.46 2.32 R
4816 5345 0.463833 GCCCGTATTTGGACTCCAGG 60.464 60.000 0.00 0.0 33.81 4.45 R
5260 5792 0.392193 ACGAGCTCCAGGCATTTCTG 60.392 55.000 8.47 0.0 44.79 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.081526 ACAGAGTATGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
25 26 6.883217 ACAGAGTATGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
26 27 8.043113 ACAGAGTATGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
27 28 9.053840 CAGAGTATGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
79 80 8.862325 ATCTGTATGTGGTAGTTCATTTGAAA 57.138 30.769 0.00 0.00 35.58 2.69
80 81 8.094798 TCTGTATGTGGTAGTTCATTTGAAAC 57.905 34.615 0.00 0.00 35.58 2.78
81 82 7.174253 TCTGTATGTGGTAGTTCATTTGAAACC 59.826 37.037 7.07 7.07 36.15 3.27
82 83 7.001674 TGTATGTGGTAGTTCATTTGAAACCT 58.998 34.615 12.88 3.26 36.42 3.50
83 84 6.976934 ATGTGGTAGTTCATTTGAAACCTT 57.023 33.333 12.88 0.28 36.42 3.50
84 85 6.783708 TGTGGTAGTTCATTTGAAACCTTT 57.216 33.333 12.88 0.00 36.42 3.11
85 86 7.883391 TGTGGTAGTTCATTTGAAACCTTTA 57.117 32.000 12.88 1.19 36.42 1.85
86 87 8.294954 TGTGGTAGTTCATTTGAAACCTTTAA 57.705 30.769 12.88 0.00 36.42 1.52
87 88 8.750298 TGTGGTAGTTCATTTGAAACCTTTAAA 58.250 29.630 12.88 0.00 36.42 1.52
88 89 9.589111 GTGGTAGTTCATTTGAAACCTTTAAAA 57.411 29.630 12.88 0.00 36.42 1.52
93 94 9.936759 AGTTCATTTGAAACCTTTAAAAAGACA 57.063 25.926 4.01 0.00 35.53 3.41
109 110 9.558396 TTAAAAAGACAAATACTTAGGAACGGA 57.442 29.630 0.00 0.00 0.00 4.69
110 111 7.668525 AAAAGACAAATACTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
111 112 5.340439 AGACAAATACTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
112 113 4.161754 AGACAAATACTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
113 114 4.098894 ACAAATACTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
114 115 4.161754 ACAAATACTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
115 116 3.684408 ATACTTAGGAACGGAGGGAGT 57.316 47.619 0.00 0.00 0.00 3.85
116 117 4.803329 ATACTTAGGAACGGAGGGAGTA 57.197 45.455 0.00 0.00 0.00 2.59
117 118 3.684408 ACTTAGGAACGGAGGGAGTAT 57.316 47.619 0.00 0.00 0.00 2.12
118 119 4.803329 ACTTAGGAACGGAGGGAGTATA 57.197 45.455 0.00 0.00 0.00 1.47
119 120 5.336491 ACTTAGGAACGGAGGGAGTATAT 57.664 43.478 0.00 0.00 0.00 0.86
120 121 5.078256 ACTTAGGAACGGAGGGAGTATATG 58.922 45.833 0.00 0.00 0.00 1.78
121 122 3.897657 AGGAACGGAGGGAGTATATGA 57.102 47.619 0.00 0.00 0.00 2.15
122 123 4.405756 AGGAACGGAGGGAGTATATGAT 57.594 45.455 0.00 0.00 0.00 2.45
123 124 5.531753 AGGAACGGAGGGAGTATATGATA 57.468 43.478 0.00 0.00 0.00 2.15
124 125 5.511363 AGGAACGGAGGGAGTATATGATAG 58.489 45.833 0.00 0.00 0.00 2.08
125 126 5.015391 AGGAACGGAGGGAGTATATGATAGT 59.985 44.000 0.00 0.00 0.00 2.12
126 127 6.217074 AGGAACGGAGGGAGTATATGATAGTA 59.783 42.308 0.00 0.00 0.00 1.82
127 128 6.318396 GGAACGGAGGGAGTATATGATAGTAC 59.682 46.154 0.00 0.00 0.00 2.73
128 129 5.753716 ACGGAGGGAGTATATGATAGTACC 58.246 45.833 0.00 0.00 0.00 3.34
129 130 5.252397 ACGGAGGGAGTATATGATAGTACCA 59.748 44.000 5.54 0.00 0.00 3.25
130 131 5.589452 CGGAGGGAGTATATGATAGTACCAC 59.411 48.000 5.54 0.00 0.00 4.16
131 132 5.589452 GGAGGGAGTATATGATAGTACCACG 59.411 48.000 5.54 0.00 0.00 4.94
132 133 4.948621 AGGGAGTATATGATAGTACCACGC 59.051 45.833 5.54 0.00 0.00 5.34
133 134 4.948621 GGGAGTATATGATAGTACCACGCT 59.051 45.833 0.00 0.00 0.00 5.07
134 135 5.418209 GGGAGTATATGATAGTACCACGCTT 59.582 44.000 0.00 0.00 0.00 4.68
135 136 6.600822 GGGAGTATATGATAGTACCACGCTTA 59.399 42.308 0.00 0.00 0.00 3.09
136 137 7.284944 GGGAGTATATGATAGTACCACGCTTAT 59.715 40.741 0.00 0.00 0.00 1.73
137 138 8.129840 GGAGTATATGATAGTACCACGCTTATG 58.870 40.741 0.00 0.00 0.00 1.90
138 139 7.481642 AGTATATGATAGTACCACGCTTATGC 58.518 38.462 0.00 0.00 0.00 3.14
139 140 4.600692 ATGATAGTACCACGCTTATGCA 57.399 40.909 1.16 0.00 39.64 3.96
140 141 4.600692 TGATAGTACCACGCTTATGCAT 57.399 40.909 3.79 3.79 39.64 3.96
141 142 5.715434 TGATAGTACCACGCTTATGCATA 57.285 39.130 1.16 1.16 39.64 3.14
142 143 5.466819 TGATAGTACCACGCTTATGCATAC 58.533 41.667 5.74 0.00 39.64 2.39
143 144 5.243060 TGATAGTACCACGCTTATGCATACT 59.757 40.000 5.74 1.95 39.64 2.12
144 145 4.402056 AGTACCACGCTTATGCATACTT 57.598 40.909 5.74 0.00 39.64 2.24
145 146 4.766375 AGTACCACGCTTATGCATACTTT 58.234 39.130 5.74 0.00 39.64 2.66
146 147 5.183228 AGTACCACGCTTATGCATACTTTT 58.817 37.500 5.74 0.00 39.64 2.27
147 148 4.616181 ACCACGCTTATGCATACTTTTC 57.384 40.909 5.74 0.00 39.64 2.29
148 149 4.006989 ACCACGCTTATGCATACTTTTCA 58.993 39.130 5.74 0.00 39.64 2.69
149 150 4.457603 ACCACGCTTATGCATACTTTTCAA 59.542 37.500 5.74 0.00 39.64 2.69
150 151 5.048364 ACCACGCTTATGCATACTTTTCAAA 60.048 36.000 5.74 0.00 39.64 2.69
151 152 5.861251 CCACGCTTATGCATACTTTTCAAAA 59.139 36.000 5.74 0.00 39.64 2.44
152 153 6.364706 CCACGCTTATGCATACTTTTCAAAAA 59.635 34.615 5.74 0.00 39.64 1.94
175 176 8.831000 AAAATTATTACGACGGAAAAGCATAC 57.169 30.769 0.00 0.00 0.00 2.39
176 177 7.781548 AATTATTACGACGGAAAAGCATACT 57.218 32.000 0.00 0.00 0.00 2.12
177 178 6.578020 TTATTACGACGGAAAAGCATACTG 57.422 37.500 0.00 0.00 0.00 2.74
178 179 2.450609 ACGACGGAAAAGCATACTGT 57.549 45.000 0.00 0.00 0.00 3.55
179 180 3.581024 ACGACGGAAAAGCATACTGTA 57.419 42.857 0.00 0.00 0.00 2.74
180 181 3.248266 ACGACGGAAAAGCATACTGTAC 58.752 45.455 0.00 0.00 0.00 2.90
181 182 2.278094 CGACGGAAAAGCATACTGTACG 59.722 50.000 0.00 0.00 0.00 3.67
182 183 3.504863 GACGGAAAAGCATACTGTACGA 58.495 45.455 0.00 0.00 0.00 3.43
183 184 3.508762 ACGGAAAAGCATACTGTACGAG 58.491 45.455 0.00 0.00 0.00 4.18
184 185 3.192001 ACGGAAAAGCATACTGTACGAGA 59.808 43.478 0.00 0.00 0.00 4.04
185 186 3.546670 CGGAAAAGCATACTGTACGAGAC 59.453 47.826 0.00 0.00 0.00 3.36
186 187 4.491676 GGAAAAGCATACTGTACGAGACA 58.508 43.478 0.00 0.00 36.35 3.41
187 188 4.326548 GGAAAAGCATACTGTACGAGACAC 59.673 45.833 0.00 0.00 33.31 3.67
188 189 4.514781 AAAGCATACTGTACGAGACACA 57.485 40.909 0.00 0.00 33.31 3.72
189 190 4.514781 AAGCATACTGTACGAGACACAA 57.485 40.909 0.00 0.00 33.31 3.33
190 191 4.098055 AGCATACTGTACGAGACACAAG 57.902 45.455 0.00 0.00 33.31 3.16
191 192 3.756963 AGCATACTGTACGAGACACAAGA 59.243 43.478 0.00 0.00 33.31 3.02
192 193 3.852536 GCATACTGTACGAGACACAAGAC 59.147 47.826 0.00 0.00 33.31 3.01
193 194 4.615223 GCATACTGTACGAGACACAAGACA 60.615 45.833 0.00 0.00 33.31 3.41
194 195 3.627732 ACTGTACGAGACACAAGACAG 57.372 47.619 0.00 0.00 40.09 3.51
195 196 2.950309 ACTGTACGAGACACAAGACAGT 59.050 45.455 0.00 0.00 41.93 3.55
196 197 4.132336 ACTGTACGAGACACAAGACAGTA 58.868 43.478 3.76 0.00 44.18 2.74
197 198 4.577693 ACTGTACGAGACACAAGACAGTAA 59.422 41.667 3.76 0.00 44.18 2.24
198 199 5.066893 ACTGTACGAGACACAAGACAGTAAA 59.933 40.000 3.76 0.00 44.18 2.01
199 200 5.893687 TGTACGAGACACAAGACAGTAAAA 58.106 37.500 0.00 0.00 31.20 1.52
200 201 5.975344 TGTACGAGACACAAGACAGTAAAAG 59.025 40.000 0.00 0.00 31.20 2.27
201 202 4.369182 ACGAGACACAAGACAGTAAAAGG 58.631 43.478 0.00 0.00 0.00 3.11
202 203 3.184581 CGAGACACAAGACAGTAAAAGGC 59.815 47.826 0.00 0.00 0.00 4.35
203 204 3.131396 AGACACAAGACAGTAAAAGGCG 58.869 45.455 0.00 0.00 0.00 5.52
204 205 2.218603 ACACAAGACAGTAAAAGGCGG 58.781 47.619 0.00 0.00 0.00 6.13
205 206 2.158871 ACACAAGACAGTAAAAGGCGGA 60.159 45.455 0.00 0.00 0.00 5.54
206 207 2.875933 CACAAGACAGTAAAAGGCGGAA 59.124 45.455 0.00 0.00 0.00 4.30
207 208 2.876550 ACAAGACAGTAAAAGGCGGAAC 59.123 45.455 0.00 0.00 0.00 3.62
251 252 4.467084 GGGATCGTCGCCCTTGCA 62.467 66.667 0.95 0.00 42.56 4.08
252 253 2.435938 GGATCGTCGCCCTTGCAA 60.436 61.111 0.00 0.00 37.32 4.08
253 254 2.750888 GGATCGTCGCCCTTGCAAC 61.751 63.158 0.00 0.00 37.32 4.17
258 259 2.970324 TCGCCCTTGCAACGACAC 60.970 61.111 6.54 0.00 37.32 3.67
259 260 4.368808 CGCCCTTGCAACGACACG 62.369 66.667 0.00 0.00 37.32 4.49
260 261 4.025401 GCCCTTGCAACGACACGG 62.025 66.667 0.00 0.00 37.47 4.94
261 262 2.590575 CCCTTGCAACGACACGGT 60.591 61.111 0.00 0.00 0.00 4.83
291 292 0.512518 GCATTTGGCGCTTTGAAACC 59.487 50.000 7.64 0.00 0.00 3.27
292 293 1.147473 CATTTGGCGCTTTGAAACCC 58.853 50.000 7.64 0.00 0.00 4.11
293 294 0.319469 ATTTGGCGCTTTGAAACCCG 60.319 50.000 7.64 0.00 0.00 5.28
294 295 1.384989 TTTGGCGCTTTGAAACCCGA 61.385 50.000 7.64 0.00 0.00 5.14
295 296 1.791103 TTGGCGCTTTGAAACCCGAG 61.791 55.000 7.64 0.00 0.00 4.63
296 297 2.126850 GCGCTTTGAAACCCGAGC 60.127 61.111 0.00 0.00 0.00 5.03
297 298 2.903547 GCGCTTTGAAACCCGAGCA 61.904 57.895 0.00 0.00 34.90 4.26
298 299 1.652012 CGCTTTGAAACCCGAGCAA 59.348 52.632 0.00 0.00 34.90 3.91
299 300 0.030101 CGCTTTGAAACCCGAGCAAA 59.970 50.000 0.00 0.00 34.90 3.68
300 301 1.335872 CGCTTTGAAACCCGAGCAAAT 60.336 47.619 0.00 0.00 34.90 2.32
301 302 2.328473 GCTTTGAAACCCGAGCAAATC 58.672 47.619 0.00 0.00 35.29 2.17
302 303 2.288152 GCTTTGAAACCCGAGCAAATCA 60.288 45.455 0.00 0.00 35.29 2.57
303 304 3.798548 GCTTTGAAACCCGAGCAAATCAA 60.799 43.478 0.00 0.00 35.29 2.57
304 305 3.641437 TTGAAACCCGAGCAAATCAAG 57.359 42.857 0.00 0.00 0.00 3.02
305 306 2.582052 TGAAACCCGAGCAAATCAAGT 58.418 42.857 0.00 0.00 0.00 3.16
306 307 2.293122 TGAAACCCGAGCAAATCAAGTG 59.707 45.455 0.00 0.00 0.00 3.16
307 308 1.247567 AACCCGAGCAAATCAAGTGG 58.752 50.000 0.00 0.00 0.00 4.00
308 309 0.110486 ACCCGAGCAAATCAAGTGGT 59.890 50.000 0.00 0.00 0.00 4.16
309 310 0.804989 CCCGAGCAAATCAAGTGGTC 59.195 55.000 0.00 0.00 39.56 4.02
310 311 1.522668 CCGAGCAAATCAAGTGGTCA 58.477 50.000 4.70 0.00 42.35 4.02
311 312 1.879380 CCGAGCAAATCAAGTGGTCAA 59.121 47.619 4.70 0.00 42.35 3.18
312 313 2.489329 CCGAGCAAATCAAGTGGTCAAT 59.511 45.455 4.70 0.00 42.35 2.57
313 314 3.495193 CGAGCAAATCAAGTGGTCAATG 58.505 45.455 4.70 0.00 42.35 2.82
314 315 3.189080 CGAGCAAATCAAGTGGTCAATGA 59.811 43.478 4.70 0.00 42.35 2.57
315 316 4.479619 GAGCAAATCAAGTGGTCAATGAC 58.520 43.478 4.51 4.51 41.94 3.06
316 317 3.058016 AGCAAATCAAGTGGTCAATGACG 60.058 43.478 7.35 0.00 32.65 4.35
317 318 3.058293 GCAAATCAAGTGGTCAATGACGA 60.058 43.478 7.35 0.00 32.65 4.20
318 319 4.466828 CAAATCAAGTGGTCAATGACGAC 58.533 43.478 18.75 18.75 40.65 4.34
324 325 4.296265 GTCAATGACGACCCACCC 57.704 61.111 0.00 0.00 0.00 4.61
325 326 1.373435 GTCAATGACGACCCACCCA 59.627 57.895 0.00 0.00 0.00 4.51
326 327 0.953960 GTCAATGACGACCCACCCAC 60.954 60.000 0.00 0.00 0.00 4.61
327 328 1.674322 CAATGACGACCCACCCACC 60.674 63.158 0.00 0.00 0.00 4.61
328 329 2.150719 AATGACGACCCACCCACCA 61.151 57.895 0.00 0.00 0.00 4.17
329 330 2.406002 AATGACGACCCACCCACCAC 62.406 60.000 0.00 0.00 0.00 4.16
330 331 4.675029 GACGACCCACCCACCACG 62.675 72.222 0.00 0.00 0.00 4.94
332 333 4.373116 CGACCCACCCACCACGAG 62.373 72.222 0.00 0.00 0.00 4.18
333 334 3.239253 GACCCACCCACCACGAGT 61.239 66.667 0.00 0.00 0.00 4.18
334 335 1.909781 GACCCACCCACCACGAGTA 60.910 63.158 0.00 0.00 0.00 2.59
335 336 1.459921 ACCCACCCACCACGAGTAA 60.460 57.895 0.00 0.00 0.00 2.24
336 337 1.004200 CCCACCCACCACGAGTAAC 60.004 63.158 0.00 0.00 0.00 2.50
337 338 1.477685 CCCACCCACCACGAGTAACT 61.478 60.000 0.00 0.00 0.00 2.24
338 339 0.320421 CCACCCACCACGAGTAACTG 60.320 60.000 0.00 0.00 0.00 3.16
339 340 0.949105 CACCCACCACGAGTAACTGC 60.949 60.000 0.00 0.00 0.00 4.40
340 341 1.375523 CCCACCACGAGTAACTGCC 60.376 63.158 0.00 0.00 0.00 4.85
341 342 1.369692 CCACCACGAGTAACTGCCA 59.630 57.895 0.00 0.00 0.00 4.92
342 343 0.250124 CCACCACGAGTAACTGCCAA 60.250 55.000 0.00 0.00 0.00 4.52
343 344 1.610624 CCACCACGAGTAACTGCCAAT 60.611 52.381 0.00 0.00 0.00 3.16
344 345 1.732259 CACCACGAGTAACTGCCAATC 59.268 52.381 0.00 0.00 0.00 2.67
345 346 0.999406 CCACGAGTAACTGCCAATCG 59.001 55.000 0.00 0.00 39.22 3.34
346 347 0.370273 CACGAGTAACTGCCAATCGC 59.630 55.000 0.00 0.00 36.89 4.58
347 348 1.076533 ACGAGTAACTGCCAATCGCG 61.077 55.000 0.00 0.00 42.08 5.87
348 349 1.348594 GAGTAACTGCCAATCGCGC 59.651 57.895 0.00 0.00 42.08 6.86
349 350 2.021380 GTAACTGCCAATCGCGCG 59.979 61.111 26.76 26.76 42.08 6.86
350 351 2.125872 TAACTGCCAATCGCGCGA 60.126 55.556 36.65 36.65 42.08 5.87
351 352 1.520564 TAACTGCCAATCGCGCGAT 60.521 52.632 37.68 37.68 42.08 4.58
352 353 1.487452 TAACTGCCAATCGCGCGATC 61.487 55.000 41.66 29.94 42.08 3.69
353 354 4.345547 CTGCCAATCGCGCGATCG 62.346 66.667 41.66 32.88 42.08 3.69
364 365 3.572539 GCGATCGCGGGCATTGAA 61.573 61.111 26.12 0.00 38.16 2.69
365 366 3.097672 CGATCGCGGGCATTGAAA 58.902 55.556 6.13 0.00 0.00 2.69
366 367 1.297598 CGATCGCGGGCATTGAAAC 60.298 57.895 6.13 0.00 0.00 2.78
367 368 1.705337 CGATCGCGGGCATTGAAACT 61.705 55.000 6.13 0.00 0.00 2.66
368 369 0.028110 GATCGCGGGCATTGAAACTC 59.972 55.000 6.13 0.00 0.00 3.01
369 370 1.705337 ATCGCGGGCATTGAAACTCG 61.705 55.000 6.13 0.00 0.00 4.18
370 371 2.387445 CGCGGGCATTGAAACTCGA 61.387 57.895 0.00 0.00 0.00 4.04
371 372 1.134694 GCGGGCATTGAAACTCGAC 59.865 57.895 0.00 0.00 0.00 4.20
372 373 1.573829 GCGGGCATTGAAACTCGACA 61.574 55.000 0.00 0.00 0.00 4.35
373 374 1.086696 CGGGCATTGAAACTCGACAT 58.913 50.000 0.00 0.00 0.00 3.06
374 375 1.062587 CGGGCATTGAAACTCGACATC 59.937 52.381 0.00 0.00 0.00 3.06
375 376 2.359900 GGGCATTGAAACTCGACATCT 58.640 47.619 0.00 0.00 0.00 2.90
376 377 2.352960 GGGCATTGAAACTCGACATCTC 59.647 50.000 0.00 0.00 0.00 2.75
377 378 2.029728 GGCATTGAAACTCGACATCTCG 59.970 50.000 0.00 0.00 41.65 4.04
378 379 2.535732 GCATTGAAACTCGACATCTCGC 60.536 50.000 0.00 0.00 39.96 5.03
379 380 1.710013 TTGAAACTCGACATCTCGCC 58.290 50.000 0.00 0.00 39.96 5.54
380 381 0.888619 TGAAACTCGACATCTCGCCT 59.111 50.000 0.00 0.00 39.96 5.52
381 382 1.272490 TGAAACTCGACATCTCGCCTT 59.728 47.619 0.00 0.00 39.96 4.35
382 383 1.656095 GAAACTCGACATCTCGCCTTG 59.344 52.381 0.00 0.00 39.96 3.61
383 384 0.737715 AACTCGACATCTCGCCTTGC 60.738 55.000 0.00 0.00 39.96 4.01
384 385 1.153765 CTCGACATCTCGCCTTGCA 60.154 57.895 0.00 0.00 39.96 4.08
385 386 0.737367 CTCGACATCTCGCCTTGCAA 60.737 55.000 0.00 0.00 39.96 4.08
386 387 1.014044 TCGACATCTCGCCTTGCAAC 61.014 55.000 0.00 0.00 39.96 4.17
387 388 1.421485 GACATCTCGCCTTGCAACG 59.579 57.895 0.00 0.00 0.00 4.10
388 389 1.291877 GACATCTCGCCTTGCAACGT 61.292 55.000 9.01 0.00 0.00 3.99
389 390 0.884704 ACATCTCGCCTTGCAACGTT 60.885 50.000 9.01 0.00 0.00 3.99
390 391 0.179215 CATCTCGCCTTGCAACGTTC 60.179 55.000 0.00 0.00 0.00 3.95
391 392 1.298859 ATCTCGCCTTGCAACGTTCC 61.299 55.000 0.00 0.00 0.00 3.62
392 393 2.966309 CTCGCCTTGCAACGTTCCC 61.966 63.158 0.00 0.00 0.00 3.97
393 394 4.038080 CGCCTTGCAACGTTCCCC 62.038 66.667 0.00 0.00 0.00 4.81
394 395 2.597510 GCCTTGCAACGTTCCCCT 60.598 61.111 0.00 0.00 0.00 4.79
395 396 2.626780 GCCTTGCAACGTTCCCCTC 61.627 63.158 0.00 0.00 0.00 4.30
396 397 1.971695 CCTTGCAACGTTCCCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
401 402 3.001406 AACGTTCCCCTCCCCTCG 61.001 66.667 0.00 0.00 0.00 4.63
418 419 0.886938 TCGAGCGGCAATCAAACCAA 60.887 50.000 1.45 0.00 0.00 3.67
419 420 0.039617 CGAGCGGCAATCAAACCAAA 60.040 50.000 1.45 0.00 0.00 3.28
420 421 1.418373 GAGCGGCAATCAAACCAAAC 58.582 50.000 1.45 0.00 0.00 2.93
421 422 0.033366 AGCGGCAATCAAACCAAACC 59.967 50.000 1.45 0.00 0.00 3.27
422 423 1.281566 GCGGCAATCAAACCAAACCG 61.282 55.000 0.00 0.00 41.97 4.44
455 456 2.622962 CCACCCGAAGAAAACGCCC 61.623 63.158 0.00 0.00 0.00 6.13
456 457 2.667199 ACCCGAAGAAAACGCCCG 60.667 61.111 0.00 0.00 0.00 6.13
457 458 4.097863 CCCGAAGAAAACGCCCGC 62.098 66.667 0.00 0.00 0.00 6.13
458 459 3.047877 CCGAAGAAAACGCCCGCT 61.048 61.111 0.00 0.00 0.00 5.52
459 460 2.474712 CGAAGAAAACGCCCGCTC 59.525 61.111 0.00 0.00 0.00 5.03
460 461 2.474712 GAAGAAAACGCCCGCTCG 59.525 61.111 0.00 0.00 0.00 5.03
461 462 3.023591 GAAGAAAACGCCCGCTCGG 62.024 63.158 0.48 0.48 0.00 4.63
474 475 4.796231 CTCGGCCGACCCAACTCG 62.796 72.222 27.28 8.25 0.00 4.18
520 521 2.897846 CAACCCAACACGCACCGA 60.898 61.111 0.00 0.00 0.00 4.69
526 527 2.050351 AACACGCACCGAGACGAG 60.050 61.111 0.00 0.00 0.00 4.18
718 730 2.352805 CCAAGCTCACACCTCCCC 59.647 66.667 0.00 0.00 0.00 4.81
721 733 1.920835 AAGCTCACACCTCCCCCTC 60.921 63.158 0.00 0.00 0.00 4.30
723 735 2.689034 CTCACACCTCCCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
724 736 3.208592 TCACACCTCCCCCTCCCT 61.209 66.667 0.00 0.00 0.00 4.20
725 737 2.689034 CACACCTCCCCCTCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
726 738 2.876858 ACACCTCCCCCTCCCTCT 60.877 66.667 0.00 0.00 0.00 3.69
727 739 2.041405 CACCTCCCCCTCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
728 740 2.204705 ACCTCCCCCTCCCTCTCT 60.205 66.667 0.00 0.00 0.00 3.10
817 832 2.930019 CCACTCCCACTCCCAGCA 60.930 66.667 0.00 0.00 0.00 4.41
865 880 2.726351 CCGAGGAGTCAAGAGGGGC 61.726 68.421 0.00 0.00 0.00 5.80
905 920 1.170290 GGCAACAACGGTTACTGCCT 61.170 55.000 26.33 0.00 42.56 4.75
906 921 0.040425 GCAACAACGGTTACTGCCTG 60.040 55.000 12.85 0.00 34.87 4.85
907 922 0.040425 CAACAACGGTTACTGCCTGC 60.040 55.000 0.00 0.00 34.87 4.85
908 923 1.503818 AACAACGGTTACTGCCTGCG 61.504 55.000 0.00 0.00 34.87 5.18
909 924 1.959226 CAACGGTTACTGCCTGCGT 60.959 57.895 0.00 0.00 0.00 5.24
910 925 1.959226 AACGGTTACTGCCTGCGTG 60.959 57.895 0.00 0.00 0.00 5.34
911 926 3.788766 CGGTTACTGCCTGCGTGC 61.789 66.667 0.00 0.00 0.00 5.34
912 927 2.358737 GGTTACTGCCTGCGTGCT 60.359 61.111 0.00 0.00 0.00 4.40
913 928 2.391389 GGTTACTGCCTGCGTGCTC 61.391 63.158 0.00 0.00 0.00 4.26
914 929 1.374758 GTTACTGCCTGCGTGCTCT 60.375 57.895 0.00 0.00 0.00 4.09
915 930 1.374631 TTACTGCCTGCGTGCTCTG 60.375 57.895 0.00 0.00 0.00 3.35
916 931 2.099652 TTACTGCCTGCGTGCTCTGT 62.100 55.000 0.00 0.00 0.00 3.41
917 932 2.492449 TACTGCCTGCGTGCTCTGTC 62.492 60.000 0.00 0.00 0.00 3.51
918 933 3.586461 CTGCCTGCGTGCTCTGTCT 62.586 63.158 0.00 0.00 0.00 3.41
919 934 2.358003 GCCTGCGTGCTCTGTCTT 60.358 61.111 0.00 0.00 0.00 3.01
922 937 1.005748 CTGCGTGCTCTGTCTTCCA 60.006 57.895 0.00 0.00 0.00 3.53
1131 1146 4.615834 GCGCTCTACCTCCGCTCG 62.616 72.222 0.00 0.00 43.95 5.03
1344 1368 3.746949 CTCCTCCACCATCAGCGCC 62.747 68.421 2.29 0.00 0.00 6.53
1365 1389 4.447342 CAAATCCTGCCGCCCCCT 62.447 66.667 0.00 0.00 0.00 4.79
1659 2100 2.585153 GCCGGGAAGAAGGACCTC 59.415 66.667 2.18 0.00 0.00 3.85
1704 2145 1.449778 GTACTTCCTCAAGGCCGCC 60.450 63.158 0.00 0.00 33.37 6.13
1811 2252 2.364002 GTCCTCAGATCAGCTTACCTCC 59.636 54.545 0.00 0.00 0.00 4.30
1882 2327 1.584483 GCTGCGTGCAATGGAATCG 60.584 57.895 0.00 0.00 42.31 3.34
2155 2600 1.818674 CTGTAACCCACTTCATTGGCC 59.181 52.381 0.00 0.00 35.00 5.36
2158 2603 1.632589 AACCCACTTCATTGGCCTTC 58.367 50.000 3.32 0.00 35.00 3.46
2164 2610 3.119849 CCACTTCATTGGCCTTCTTTACG 60.120 47.826 3.32 0.00 0.00 3.18
2190 2638 5.163723 GCTTCAGTTTTGGATCATCGATCAA 60.164 40.000 0.00 0.00 40.50 2.57
2224 2673 4.817464 AGAGCTTGAGCAGATTGATTCATC 59.183 41.667 5.70 0.00 45.16 2.92
2225 2674 4.783055 AGCTTGAGCAGATTGATTCATCT 58.217 39.130 5.70 0.00 45.16 2.90
2226 2675 4.817464 AGCTTGAGCAGATTGATTCATCTC 59.183 41.667 5.70 0.00 45.16 2.75
2227 2676 4.318903 GCTTGAGCAGATTGATTCATCTCG 60.319 45.833 0.00 0.00 41.59 4.04
2228 2677 4.660789 TGAGCAGATTGATTCATCTCGA 57.339 40.909 0.00 0.00 31.46 4.04
2229 2678 4.366586 TGAGCAGATTGATTCATCTCGAC 58.633 43.478 0.00 0.00 31.46 4.20
2230 2679 4.142093 TGAGCAGATTGATTCATCTCGACA 60.142 41.667 0.00 0.00 31.46 4.35
2231 2680 4.958509 AGCAGATTGATTCATCTCGACAT 58.041 39.130 0.00 0.00 0.00 3.06
2232 2681 6.094193 AGCAGATTGATTCATCTCGACATA 57.906 37.500 0.00 0.00 0.00 2.29
2233 2682 6.157904 AGCAGATTGATTCATCTCGACATAG 58.842 40.000 0.00 0.00 0.00 2.23
2234 2683 6.015603 AGCAGATTGATTCATCTCGACATAGA 60.016 38.462 0.00 0.00 0.00 1.98
2235 2684 6.308524 GCAGATTGATTCATCTCGACATAGAG 59.691 42.308 0.00 0.00 39.52 2.43
2236 2685 7.369607 CAGATTGATTCATCTCGACATAGAGT 58.630 38.462 0.00 0.00 39.21 3.24
2237 2686 8.510505 CAGATTGATTCATCTCGACATAGAGTA 58.489 37.037 0.00 0.00 39.21 2.59
2238 2687 8.729756 AGATTGATTCATCTCGACATAGAGTAG 58.270 37.037 0.00 0.00 39.21 2.57
2239 2688 6.809630 TGATTCATCTCGACATAGAGTAGG 57.190 41.667 0.00 0.00 39.21 3.18
2240 2689 6.299922 TGATTCATCTCGACATAGAGTAGGT 58.700 40.000 0.00 0.00 39.21 3.08
2241 2690 6.205658 TGATTCATCTCGACATAGAGTAGGTG 59.794 42.308 0.00 0.00 39.21 4.00
2242 2691 5.291905 TCATCTCGACATAGAGTAGGTGA 57.708 43.478 0.00 0.00 39.21 4.02
2243 2692 5.301555 TCATCTCGACATAGAGTAGGTGAG 58.698 45.833 0.00 0.00 39.21 3.51
2244 2693 3.468770 TCTCGACATAGAGTAGGTGAGC 58.531 50.000 0.00 0.00 39.21 4.26
2245 2694 3.118371 TCTCGACATAGAGTAGGTGAGCA 60.118 47.826 0.00 0.00 39.21 4.26
2246 2695 3.206964 TCGACATAGAGTAGGTGAGCAG 58.793 50.000 0.00 0.00 0.00 4.24
2247 2696 2.292016 CGACATAGAGTAGGTGAGCAGG 59.708 54.545 0.00 0.00 0.00 4.85
2248 2697 2.035321 GACATAGAGTAGGTGAGCAGGC 59.965 54.545 0.00 0.00 0.00 4.85
2249 2698 1.000827 CATAGAGTAGGTGAGCAGGCG 60.001 57.143 0.00 0.00 0.00 5.52
2250 2699 0.752009 TAGAGTAGGTGAGCAGGCGG 60.752 60.000 0.00 0.00 0.00 6.13
2251 2700 2.037367 AGTAGGTGAGCAGGCGGA 59.963 61.111 0.00 0.00 0.00 5.54
2252 2701 1.381872 AGTAGGTGAGCAGGCGGAT 60.382 57.895 0.00 0.00 0.00 4.18
2253 2702 0.978146 AGTAGGTGAGCAGGCGGATT 60.978 55.000 0.00 0.00 0.00 3.01
2254 2703 0.530870 GTAGGTGAGCAGGCGGATTC 60.531 60.000 0.00 0.00 0.00 2.52
2255 2704 0.975556 TAGGTGAGCAGGCGGATTCA 60.976 55.000 0.00 0.00 0.00 2.57
2256 2705 1.377202 GGTGAGCAGGCGGATTCAA 60.377 57.895 0.00 0.00 0.00 2.69
2291 2740 5.463724 GGCTTGGTTAGATAGATCTCAAACG 59.536 44.000 0.00 0.00 38.32 3.60
2408 2860 5.130477 TGGGAGATACTAACAAGGATTCCAC 59.870 44.000 5.29 0.00 0.00 4.02
2451 2903 3.258372 TCTCGAGCAAAGTACATTCTGGT 59.742 43.478 7.81 0.00 0.00 4.00
2490 2942 6.203530 TGTTTGTTTGTTCATTCACTTTGCAA 59.796 30.769 0.00 0.00 0.00 4.08
2495 2947 8.763356 TGTTTGTTCATTCACTTTGCAATAATC 58.237 29.630 0.00 0.00 0.00 1.75
2626 3081 2.912967 GCAAGACAGAATTTCATGTGCG 59.087 45.455 0.00 0.00 0.00 5.34
2675 3132 7.120285 ACAACTGATGTGATCTTTCATCGAATT 59.880 33.333 15.55 9.99 41.93 2.17
2704 3161 4.243007 ACTTGTTTAGCTCATTTGCCAC 57.757 40.909 0.00 0.00 0.00 5.01
2772 3229 8.887717 AGTAATCATGAAATGTCAGCTTTAGTC 58.112 33.333 0.00 0.00 46.80 2.59
2882 3341 5.478407 CCCCTTTTATCGCATCAAAACTTT 58.522 37.500 0.00 0.00 0.00 2.66
2883 3342 5.348451 CCCCTTTTATCGCATCAAAACTTTG 59.652 40.000 0.00 0.00 39.48 2.77
3058 3518 0.033109 TGGAGATGGAGAGCCTCGAA 60.033 55.000 0.00 0.00 34.31 3.71
3257 3734 5.883673 GTCTCACTACTTCCTGTATCTGTCT 59.116 44.000 0.00 0.00 0.00 3.41
3430 3912 2.082231 CTGCCAACCACTGATTCAGAG 58.918 52.381 20.33 12.12 35.18 3.35
3431 3913 1.421268 TGCCAACCACTGATTCAGAGT 59.579 47.619 20.33 13.31 35.18 3.24
3432 3914 2.158623 TGCCAACCACTGATTCAGAGTT 60.159 45.455 20.33 17.80 35.18 3.01
3433 3915 2.887152 GCCAACCACTGATTCAGAGTTT 59.113 45.455 20.33 4.40 35.18 2.66
3434 3916 3.057946 GCCAACCACTGATTCAGAGTTTC 60.058 47.826 20.33 11.93 35.18 2.78
3435 3917 4.136796 CCAACCACTGATTCAGAGTTTCA 58.863 43.478 20.33 0.00 35.18 2.69
3436 3918 4.214971 CCAACCACTGATTCAGAGTTTCAG 59.785 45.833 20.33 10.49 42.05 3.02
3437 3919 4.963318 ACCACTGATTCAGAGTTTCAGA 57.037 40.909 20.33 0.00 39.36 3.27
3472 3956 3.149196 TGTTTCTCTTTGGTCCTCATGC 58.851 45.455 0.00 0.00 0.00 4.06
3544 4029 4.623932 TGAGCATTCAAGTAGTGGAGTT 57.376 40.909 0.00 0.00 0.00 3.01
3572 4057 0.112412 GTGGTGTTGGTGGGATCCTT 59.888 55.000 12.58 0.00 0.00 3.36
3576 4061 2.654863 GTGTTGGTGGGATCCTTATGG 58.345 52.381 12.58 0.00 0.00 2.74
3613 4099 4.713814 ACTGAATCTCCTGCTCACTGATTA 59.286 41.667 0.00 0.00 0.00 1.75
3675 4182 0.609957 CATTGCCTGGTCCAGCTGAA 60.610 55.000 17.39 5.71 0.00 3.02
3691 4198 2.266279 CTGAACTGACCCCTCCCTTTA 58.734 52.381 0.00 0.00 0.00 1.85
3711 4218 0.107214 GGCAATGGTGGCTGTAGCTA 60.107 55.000 3.63 0.00 46.62 3.32
3712 4219 1.477558 GGCAATGGTGGCTGTAGCTAT 60.478 52.381 0.00 0.00 46.62 2.97
3713 4220 2.224523 GGCAATGGTGGCTGTAGCTATA 60.225 50.000 0.00 0.00 46.62 1.31
3763 4274 3.134574 TCATAGTGGTGGTGGTGTTTC 57.865 47.619 0.00 0.00 0.00 2.78
3764 4275 2.439880 TCATAGTGGTGGTGGTGTTTCA 59.560 45.455 0.00 0.00 0.00 2.69
3772 4283 2.425312 GTGGTGGTGTTTCACATGTCAA 59.575 45.455 0.00 0.00 39.27 3.18
3793 4304 1.487558 TGCTTGATGCTATGAGCCTGA 59.512 47.619 0.00 0.00 41.51 3.86
3820 4332 1.268352 GTTTGGTGCTGTTTATCGCCA 59.732 47.619 0.00 0.00 40.72 5.69
3829 4341 3.375299 GCTGTTTATCGCCATCAGAAGTT 59.625 43.478 0.00 0.00 0.00 2.66
3864 4381 4.641989 AGTTTGGAACATAATAGCTGGCTG 59.358 41.667 5.25 0.00 39.30 4.85
4075 4592 7.228906 ACATCATGATGCCTCTAAATGAAAGAG 59.771 37.037 31.17 5.64 42.39 2.85
4127 4644 2.483188 CCTATTCGTTCCTGCTACCCAC 60.483 54.545 0.00 0.00 0.00 4.61
4128 4645 0.981183 ATTCGTTCCTGCTACCCACA 59.019 50.000 0.00 0.00 0.00 4.17
4129 4646 0.981183 TTCGTTCCTGCTACCCACAT 59.019 50.000 0.00 0.00 0.00 3.21
4130 4647 0.981183 TCGTTCCTGCTACCCACATT 59.019 50.000 0.00 0.00 0.00 2.71
4131 4648 1.349688 TCGTTCCTGCTACCCACATTT 59.650 47.619 0.00 0.00 0.00 2.32
4132 4649 2.159382 CGTTCCTGCTACCCACATTTT 58.841 47.619 0.00 0.00 0.00 1.82
4133 4650 2.556622 CGTTCCTGCTACCCACATTTTT 59.443 45.455 0.00 0.00 0.00 1.94
4134 4651 3.611530 CGTTCCTGCTACCCACATTTTTG 60.612 47.826 0.00 0.00 0.00 2.44
4135 4652 3.237268 TCCTGCTACCCACATTTTTGT 57.763 42.857 0.00 0.00 0.00 2.83
4136 4653 3.571590 TCCTGCTACCCACATTTTTGTT 58.428 40.909 0.00 0.00 0.00 2.83
4137 4654 3.320541 TCCTGCTACCCACATTTTTGTTG 59.679 43.478 0.00 0.00 0.00 3.33
4138 4655 3.059166 CTGCTACCCACATTTTTGTTGC 58.941 45.455 0.00 0.00 0.00 4.17
4139 4656 2.432146 TGCTACCCACATTTTTGTTGCA 59.568 40.909 0.00 0.00 37.18 4.08
4185 4710 6.354130 TCCTGCAGTTTACTTCAGTTACTTT 58.646 36.000 13.81 0.00 35.84 2.66
4437 4966 0.904649 TACCTGACCATGAGCACCAG 59.095 55.000 0.00 0.00 0.00 4.00
4465 4994 3.055719 AATGACCACCGGCAAGCG 61.056 61.111 0.00 0.00 0.00 4.68
4612 5141 5.003160 CACAACCCACTCATGAAAGACATA 58.997 41.667 0.00 0.00 37.46 2.29
4711 5240 3.169512 GGGATCAAAACCCTCCTTTCA 57.830 47.619 0.00 0.00 43.65 2.69
4938 5467 1.212229 GGGTGGACGACGAGAAGAC 59.788 63.158 0.00 0.00 0.00 3.01
4999 5528 0.764890 TGAACAACCTCCAGACAGGG 59.235 55.000 0.00 0.00 37.96 4.45
5337 5869 4.520492 TCTTTCTTTTTGCCTGGCTTCTAG 59.480 41.667 21.03 11.94 0.00 2.43
5389 5921 2.229792 TGAAGAGCTGCGGTTTTTGAT 58.770 42.857 0.00 0.00 0.00 2.57
5395 5927 1.795162 GCTGCGGTTTTTGATCATCCG 60.795 52.381 18.25 18.25 43.37 4.18
5396 5928 0.808125 TGCGGTTTTTGATCATCCGG 59.192 50.000 21.50 0.00 41.24 5.14
5431 5963 2.110899 TCTGGGGTTGGCTTTCCATTTA 59.889 45.455 0.00 0.00 43.05 1.40
5432 5964 3.106827 CTGGGGTTGGCTTTCCATTTAT 58.893 45.455 0.00 0.00 43.05 1.40
5434 5966 3.517500 TGGGGTTGGCTTTCCATTTATTC 59.482 43.478 0.00 0.00 43.05 1.75
5436 5968 3.774766 GGGTTGGCTTTCCATTTATTCCT 59.225 43.478 0.00 0.00 43.05 3.36
5437 5969 4.383010 GGGTTGGCTTTCCATTTATTCCTG 60.383 45.833 0.00 0.00 43.05 3.86
5486 6019 1.209261 CCCCTTCTCTCTCAGGCTTTC 59.791 57.143 0.00 0.00 0.00 2.62
5492 6025 3.369175 TCTCTCTCAGGCTTTCTATGCA 58.631 45.455 0.00 0.00 0.00 3.96
5493 6026 3.966006 TCTCTCTCAGGCTTTCTATGCAT 59.034 43.478 3.79 3.79 0.00 3.96
5494 6027 4.408270 TCTCTCTCAGGCTTTCTATGCATT 59.592 41.667 3.54 0.00 0.00 3.56
5508 6045 6.005066 TCTATGCATTCTGGAGAATTTGGA 57.995 37.500 3.54 0.00 42.41 3.53
5539 6076 6.210396 GCTGTTTGCACTACCAAAATTTAC 57.790 37.500 0.00 0.00 42.31 2.01
5542 6079 6.631016 TGTTTGCACTACCAAAATTTACACA 58.369 32.000 0.00 0.00 36.55 3.72
5551 6088 5.482908 ACCAAAATTTACACAAGTTGCACA 58.517 33.333 1.81 0.00 0.00 4.57
5552 6089 6.112058 ACCAAAATTTACACAAGTTGCACAT 58.888 32.000 1.81 0.00 0.00 3.21
5553 6090 7.268586 ACCAAAATTTACACAAGTTGCACATA 58.731 30.769 1.81 0.00 0.00 2.29
5554 6091 7.766278 ACCAAAATTTACACAAGTTGCACATAA 59.234 29.630 1.81 0.00 0.00 1.90
5555 6092 8.772705 CCAAAATTTACACAAGTTGCACATAAT 58.227 29.630 1.81 0.00 0.00 1.28
5558 6095 8.687824 AATTTACACAAGTTGCACATAATAGC 57.312 30.769 1.81 0.00 0.00 2.97
5580 6117 1.580815 GGTTGTTTTGTGCCATGGTG 58.419 50.000 14.67 0.00 0.00 4.17
5653 6191 5.072040 TCAATCTGTTCAGACGATAAGCA 57.928 39.130 4.58 0.00 0.00 3.91
5657 6195 7.383300 TCAATCTGTTCAGACGATAAGCATATG 59.617 37.037 4.58 0.00 0.00 1.78
5698 6236 9.408648 CCCTATCACCACAAAGAAGTTATAATT 57.591 33.333 0.00 0.00 0.00 1.40
5701 6239 8.877864 ATCACCACAAAGAAGTTATAATTCCA 57.122 30.769 0.00 0.00 0.00 3.53
5702 6240 8.877864 TCACCACAAAGAAGTTATAATTCCAT 57.122 30.769 0.00 0.00 0.00 3.41
5703 6241 9.308000 TCACCACAAAGAAGTTATAATTCCATT 57.692 29.630 0.00 0.00 0.00 3.16
5704 6242 9.927668 CACCACAAAGAAGTTATAATTCCATTT 57.072 29.630 0.00 0.00 0.00 2.32
5730 6268 3.011119 TGTTGACAACAAGCCTACGTTT 58.989 40.909 18.56 0.00 38.72 3.60
5744 6282 3.060070 CCTACGTTTGTTCTCACGAAACC 60.060 47.826 0.00 0.00 39.76 3.27
5760 6298 8.385898 TCACGAAACCTTTGAGTAATTAACAT 57.614 30.769 0.00 0.00 0.00 2.71
5781 6319 7.750229 ACATAAAATCTCAAAGCAGAGTTCA 57.250 32.000 0.00 0.00 36.97 3.18
5782 6320 8.345724 ACATAAAATCTCAAAGCAGAGTTCAT 57.654 30.769 0.00 0.00 36.97 2.57
5783 6321 8.800332 ACATAAAATCTCAAAGCAGAGTTCATT 58.200 29.630 0.00 0.00 36.97 2.57
5786 6324 7.750229 AAATCTCAAAGCAGAGTTCATTACA 57.250 32.000 0.00 0.00 36.97 2.41
5796 6389 5.691305 GCAGAGTTCATTACATGTTTTTGCA 59.309 36.000 2.30 0.00 0.00 4.08
5827 6420 2.434884 CACGAACCCTCATGCGCT 60.435 61.111 9.73 0.00 0.00 5.92
5831 6424 0.032678 CGAACCCTCATGCGCTAGAT 59.967 55.000 9.73 0.00 0.00 1.98
5902 6495 6.322201 ACTCGATTTGAATCTGCCCATATTTT 59.678 34.615 2.58 0.00 33.24 1.82
6011 6607 9.450807 CCTGTAACAACATAATATAAGCAAAGC 57.549 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.317842 AGATTCACTCATTTTGCATACTCTG 57.682 36.000 0.00 0.00 0.00 3.35
53 54 9.952030 TTTCAAATGAACTACCACATACAGATA 57.048 29.630 0.00 0.00 33.13 1.98
54 55 8.730680 GTTTCAAATGAACTACCACATACAGAT 58.269 33.333 0.00 0.00 33.13 2.90
55 56 7.174253 GGTTTCAAATGAACTACCACATACAGA 59.826 37.037 10.68 0.00 35.83 3.41
56 57 7.174946 AGGTTTCAAATGAACTACCACATACAG 59.825 37.037 15.74 0.00 37.38 2.74
57 58 7.001674 AGGTTTCAAATGAACTACCACATACA 58.998 34.615 15.74 0.00 37.38 2.29
58 59 7.448748 AGGTTTCAAATGAACTACCACATAC 57.551 36.000 15.74 1.57 37.38 2.39
59 60 8.472007 AAAGGTTTCAAATGAACTACCACATA 57.528 30.769 15.74 0.00 37.38 2.29
60 61 6.976934 AAGGTTTCAAATGAACTACCACAT 57.023 33.333 15.74 0.00 37.38 3.21
61 62 6.783708 AAAGGTTTCAAATGAACTACCACA 57.216 33.333 15.74 0.00 37.38 4.17
62 63 9.589111 TTTTAAAGGTTTCAAATGAACTACCAC 57.411 29.630 15.74 3.88 37.38 4.16
67 68 9.936759 TGTCTTTTTAAAGGTTTCAAATGAACT 57.063 25.926 2.63 0.00 36.67 3.01
83 84 9.558396 TCCGTTCCTAAGTATTTGTCTTTTTAA 57.442 29.630 0.00 0.00 0.00 1.52
84 85 9.211485 CTCCGTTCCTAAGTATTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
85 86 7.174426 CCTCCGTTCCTAAGTATTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
86 87 6.653740 CCTCCGTTCCTAAGTATTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
87 88 6.171213 CCTCCGTTCCTAAGTATTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
88 89 5.338137 CCCTCCGTTCCTAAGTATTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
89 90 4.161754 CCCTCCGTTCCTAAGTATTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
90 91 4.161001 TCCCTCCGTTCCTAAGTATTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
91 92 4.098894 TCCCTCCGTTCCTAAGTATTTGT 58.901 43.478 0.00 0.00 0.00 2.83
92 93 4.161754 ACTCCCTCCGTTCCTAAGTATTTG 59.838 45.833 0.00 0.00 0.00 2.32
93 94 4.359996 ACTCCCTCCGTTCCTAAGTATTT 58.640 43.478 0.00 0.00 0.00 1.40
94 95 3.991683 ACTCCCTCCGTTCCTAAGTATT 58.008 45.455 0.00 0.00 0.00 1.89
95 96 3.684408 ACTCCCTCCGTTCCTAAGTAT 57.316 47.619 0.00 0.00 0.00 2.12
96 97 4.803329 ATACTCCCTCCGTTCCTAAGTA 57.197 45.455 0.00 0.00 0.00 2.24
97 98 3.684408 ATACTCCCTCCGTTCCTAAGT 57.316 47.619 0.00 0.00 0.00 2.24
98 99 5.322754 TCATATACTCCCTCCGTTCCTAAG 58.677 45.833 0.00 0.00 0.00 2.18
99 100 5.329191 TCATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
100 101 5.531753 ATCATATACTCCCTCCGTTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
101 102 3.897657 TCATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
102 103 5.262804 ACTATCATATACTCCCTCCGTTCC 58.737 45.833 0.00 0.00 0.00 3.62
103 104 6.318396 GGTACTATCATATACTCCCTCCGTTC 59.682 46.154 0.00 0.00 0.00 3.95
104 105 6.186234 GGTACTATCATATACTCCCTCCGTT 58.814 44.000 0.00 0.00 0.00 4.44
105 106 5.252397 TGGTACTATCATATACTCCCTCCGT 59.748 44.000 0.00 0.00 0.00 4.69
106 107 5.589452 GTGGTACTATCATATACTCCCTCCG 59.411 48.000 0.00 0.00 0.00 4.63
107 108 5.589452 CGTGGTACTATCATATACTCCCTCC 59.411 48.000 0.00 0.00 0.00 4.30
108 109 5.066246 GCGTGGTACTATCATATACTCCCTC 59.934 48.000 0.00 0.00 0.00 4.30
109 110 4.948621 GCGTGGTACTATCATATACTCCCT 59.051 45.833 0.00 0.00 0.00 4.20
110 111 4.948621 AGCGTGGTACTATCATATACTCCC 59.051 45.833 0.00 0.00 0.00 4.30
111 112 6.512342 AAGCGTGGTACTATCATATACTCC 57.488 41.667 0.00 0.00 0.00 3.85
112 113 7.644551 GCATAAGCGTGGTACTATCATATACTC 59.355 40.741 0.00 0.00 0.00 2.59
113 114 7.122204 TGCATAAGCGTGGTACTATCATATACT 59.878 37.037 0.00 0.00 46.23 2.12
114 115 7.255569 TGCATAAGCGTGGTACTATCATATAC 58.744 38.462 0.00 0.00 46.23 1.47
115 116 7.399245 TGCATAAGCGTGGTACTATCATATA 57.601 36.000 0.00 0.00 46.23 0.86
116 117 6.280855 TGCATAAGCGTGGTACTATCATAT 57.719 37.500 0.00 0.00 46.23 1.78
117 118 5.715434 TGCATAAGCGTGGTACTATCATA 57.285 39.130 0.00 0.00 46.23 2.15
118 119 4.600692 TGCATAAGCGTGGTACTATCAT 57.399 40.909 0.00 0.00 46.23 2.45
119 120 4.600692 ATGCATAAGCGTGGTACTATCA 57.399 40.909 0.00 0.00 46.23 2.15
120 121 5.710984 AGTATGCATAAGCGTGGTACTATC 58.289 41.667 8.28 0.00 46.23 2.08
121 122 5.723672 AGTATGCATAAGCGTGGTACTAT 57.276 39.130 8.28 0.00 46.23 2.12
122 123 5.524971 AAGTATGCATAAGCGTGGTACTA 57.475 39.130 8.28 0.00 46.23 1.82
123 124 4.402056 AAGTATGCATAAGCGTGGTACT 57.598 40.909 8.28 0.00 46.23 2.73
124 125 5.064198 TGAAAAGTATGCATAAGCGTGGTAC 59.936 40.000 8.28 0.00 46.23 3.34
125 126 5.179533 TGAAAAGTATGCATAAGCGTGGTA 58.820 37.500 8.28 0.00 46.23 3.25
126 127 4.006989 TGAAAAGTATGCATAAGCGTGGT 58.993 39.130 8.28 0.00 46.23 4.16
127 128 4.614555 TGAAAAGTATGCATAAGCGTGG 57.385 40.909 8.28 0.00 46.23 4.94
128 129 6.926280 TTTTGAAAAGTATGCATAAGCGTG 57.074 33.333 8.28 0.00 46.23 5.34
149 150 9.281075 GTATGCTTTTCCGTCGTAATAATTTTT 57.719 29.630 0.00 0.00 0.00 1.94
150 151 8.671028 AGTATGCTTTTCCGTCGTAATAATTTT 58.329 29.630 0.00 0.00 0.00 1.82
151 152 8.120465 CAGTATGCTTTTCCGTCGTAATAATTT 58.880 33.333 0.00 0.00 0.00 1.82
152 153 7.279313 ACAGTATGCTTTTCCGTCGTAATAATT 59.721 33.333 0.00 0.00 42.53 1.40
153 154 6.759827 ACAGTATGCTTTTCCGTCGTAATAAT 59.240 34.615 0.00 0.00 42.53 1.28
154 155 6.101332 ACAGTATGCTTTTCCGTCGTAATAA 58.899 36.000 0.00 0.00 42.53 1.40
155 156 5.653507 ACAGTATGCTTTTCCGTCGTAATA 58.346 37.500 0.00 0.00 42.53 0.98
156 157 4.501071 ACAGTATGCTTTTCCGTCGTAAT 58.499 39.130 0.00 0.00 42.53 1.89
157 158 3.916761 ACAGTATGCTTTTCCGTCGTAA 58.083 40.909 0.00 0.00 42.53 3.18
158 159 3.581024 ACAGTATGCTTTTCCGTCGTA 57.419 42.857 0.00 0.00 42.53 3.43
159 160 2.450609 ACAGTATGCTTTTCCGTCGT 57.549 45.000 0.00 0.00 42.53 4.34
160 161 2.278094 CGTACAGTATGCTTTTCCGTCG 59.722 50.000 0.00 0.00 42.53 5.12
161 162 3.504863 TCGTACAGTATGCTTTTCCGTC 58.495 45.455 0.00 0.00 42.53 4.79
162 163 3.192001 TCTCGTACAGTATGCTTTTCCGT 59.808 43.478 0.00 0.00 42.53 4.69
163 164 3.546670 GTCTCGTACAGTATGCTTTTCCG 59.453 47.826 0.00 0.00 42.53 4.30
164 165 4.326548 GTGTCTCGTACAGTATGCTTTTCC 59.673 45.833 0.00 0.00 42.53 3.13
165 166 4.921515 TGTGTCTCGTACAGTATGCTTTTC 59.078 41.667 0.00 0.00 42.53 2.29
166 167 4.878439 TGTGTCTCGTACAGTATGCTTTT 58.122 39.130 0.00 0.00 42.53 2.27
167 168 4.514781 TGTGTCTCGTACAGTATGCTTT 57.485 40.909 0.00 0.00 42.53 3.51
168 169 4.217767 TCTTGTGTCTCGTACAGTATGCTT 59.782 41.667 0.00 0.00 42.53 3.91
169 170 3.756963 TCTTGTGTCTCGTACAGTATGCT 59.243 43.478 0.00 0.00 42.53 3.79
170 171 3.852536 GTCTTGTGTCTCGTACAGTATGC 59.147 47.826 0.00 0.00 42.53 3.14
171 172 5.043189 TGTCTTGTGTCTCGTACAGTATG 57.957 43.478 0.00 0.00 39.29 2.39
172 173 4.760715 ACTGTCTTGTGTCTCGTACAGTAT 59.239 41.667 4.23 0.00 44.11 2.12
173 174 4.132336 ACTGTCTTGTGTCTCGTACAGTA 58.868 43.478 4.23 0.00 44.11 2.74
174 175 2.950309 ACTGTCTTGTGTCTCGTACAGT 59.050 45.455 0.00 0.00 41.89 3.55
175 176 3.627732 ACTGTCTTGTGTCTCGTACAG 57.372 47.619 0.00 0.00 39.29 2.74
176 177 5.503662 TTTACTGTCTTGTGTCTCGTACA 57.496 39.130 0.00 0.00 35.06 2.90
177 178 5.401674 CCTTTTACTGTCTTGTGTCTCGTAC 59.598 44.000 0.00 0.00 0.00 3.67
178 179 5.526115 CCTTTTACTGTCTTGTGTCTCGTA 58.474 41.667 0.00 0.00 0.00 3.43
179 180 4.369182 CCTTTTACTGTCTTGTGTCTCGT 58.631 43.478 0.00 0.00 0.00 4.18
180 181 3.184581 GCCTTTTACTGTCTTGTGTCTCG 59.815 47.826 0.00 0.00 0.00 4.04
181 182 3.184581 CGCCTTTTACTGTCTTGTGTCTC 59.815 47.826 0.00 0.00 0.00 3.36
182 183 3.131396 CGCCTTTTACTGTCTTGTGTCT 58.869 45.455 0.00 0.00 0.00 3.41
183 184 2.223377 CCGCCTTTTACTGTCTTGTGTC 59.777 50.000 0.00 0.00 0.00 3.67
184 185 2.158871 TCCGCCTTTTACTGTCTTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
185 186 2.489971 TCCGCCTTTTACTGTCTTGTG 58.510 47.619 0.00 0.00 0.00 3.33
186 187 2.876550 GTTCCGCCTTTTACTGTCTTGT 59.123 45.455 0.00 0.00 0.00 3.16
187 188 2.096417 CGTTCCGCCTTTTACTGTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
188 189 2.140717 CGTTCCGCCTTTTACTGTCTT 58.859 47.619 0.00 0.00 0.00 3.01
189 190 1.792006 CGTTCCGCCTTTTACTGTCT 58.208 50.000 0.00 0.00 0.00 3.41
234 235 3.969250 TTGCAAGGGCGACGATCCC 62.969 63.158 0.00 0.00 45.35 3.85
235 236 2.435938 TTGCAAGGGCGACGATCC 60.436 61.111 0.00 0.00 45.35 3.36
236 237 2.785258 GTTGCAAGGGCGACGATC 59.215 61.111 0.00 0.00 44.12 3.69
241 242 2.970324 GTGTCGTTGCAAGGGCGA 60.970 61.111 17.92 12.33 45.35 5.54
242 243 4.368808 CGTGTCGTTGCAAGGGCG 62.369 66.667 17.92 15.45 45.35 6.13
243 244 4.025401 CCGTGTCGTTGCAAGGGC 62.025 66.667 16.50 16.50 41.68 5.19
244 245 2.590575 ACCGTGTCGTTGCAAGGG 60.591 61.111 18.38 5.94 41.32 3.95
245 246 2.631428 CACCGTGTCGTTGCAAGG 59.369 61.111 12.91 12.91 42.43 3.61
246 247 2.052237 GCACCGTGTCGTTGCAAG 60.052 61.111 0.00 0.00 0.00 4.01
247 248 3.578272 GGCACCGTGTCGTTGCAA 61.578 61.111 12.84 0.00 0.00 4.08
272 273 0.512518 GGTTTCAAAGCGCCAAATGC 59.487 50.000 2.29 0.00 0.00 3.56
273 274 1.147473 GGGTTTCAAAGCGCCAAATG 58.853 50.000 2.29 0.00 0.00 2.32
274 275 0.319469 CGGGTTTCAAAGCGCCAAAT 60.319 50.000 2.29 0.00 0.00 2.32
275 276 1.066587 CGGGTTTCAAAGCGCCAAA 59.933 52.632 2.29 0.00 0.00 3.28
276 277 1.791103 CTCGGGTTTCAAAGCGCCAA 61.791 55.000 2.29 0.00 0.00 4.52
277 278 2.203224 TCGGGTTTCAAAGCGCCA 60.203 55.556 2.29 0.00 0.00 5.69
278 279 2.561373 CTCGGGTTTCAAAGCGCC 59.439 61.111 2.29 0.00 0.00 6.53
279 280 2.126850 GCTCGGGTTTCAAAGCGC 60.127 61.111 0.00 0.00 0.00 5.92
280 281 0.030101 TTTGCTCGGGTTTCAAAGCG 59.970 50.000 0.00 0.00 37.57 4.68
281 282 2.288152 TGATTTGCTCGGGTTTCAAAGC 60.288 45.455 0.00 0.00 36.84 3.51
282 283 3.641437 TGATTTGCTCGGGTTTCAAAG 57.359 42.857 0.00 0.00 33.83 2.77
283 284 3.383185 ACTTGATTTGCTCGGGTTTCAAA 59.617 39.130 0.00 0.00 34.68 2.69
284 285 2.955660 ACTTGATTTGCTCGGGTTTCAA 59.044 40.909 0.00 0.00 0.00 2.69
285 286 2.293122 CACTTGATTTGCTCGGGTTTCA 59.707 45.455 0.00 0.00 0.00 2.69
286 287 2.351738 CCACTTGATTTGCTCGGGTTTC 60.352 50.000 0.00 0.00 0.00 2.78
287 288 1.613437 CCACTTGATTTGCTCGGGTTT 59.387 47.619 0.00 0.00 0.00 3.27
288 289 1.247567 CCACTTGATTTGCTCGGGTT 58.752 50.000 0.00 0.00 0.00 4.11
289 290 0.110486 ACCACTTGATTTGCTCGGGT 59.890 50.000 0.00 0.00 0.00 5.28
290 291 0.804989 GACCACTTGATTTGCTCGGG 59.195 55.000 0.00 0.00 0.00 5.14
291 292 1.522668 TGACCACTTGATTTGCTCGG 58.477 50.000 0.00 0.00 0.00 4.63
292 293 3.189080 TCATTGACCACTTGATTTGCTCG 59.811 43.478 0.00 0.00 0.00 5.03
293 294 4.479619 GTCATTGACCACTTGATTTGCTC 58.520 43.478 5.44 0.00 0.00 4.26
294 295 3.058016 CGTCATTGACCACTTGATTTGCT 60.058 43.478 11.12 0.00 0.00 3.91
295 296 3.058293 TCGTCATTGACCACTTGATTTGC 60.058 43.478 11.12 0.00 0.00 3.68
296 297 4.466828 GTCGTCATTGACCACTTGATTTG 58.533 43.478 11.12 0.00 32.61 2.32
297 298 4.749245 GTCGTCATTGACCACTTGATTT 57.251 40.909 11.12 0.00 32.61 2.17
307 308 0.953960 GTGGGTGGGTCGTCATTGAC 60.954 60.000 6.73 6.73 38.17 3.18
308 309 1.373435 GTGGGTGGGTCGTCATTGA 59.627 57.895 0.00 0.00 0.00 2.57
309 310 1.674322 GGTGGGTGGGTCGTCATTG 60.674 63.158 0.00 0.00 0.00 2.82
310 311 2.150719 TGGTGGGTGGGTCGTCATT 61.151 57.895 0.00 0.00 0.00 2.57
311 312 2.528127 TGGTGGGTGGGTCGTCAT 60.528 61.111 0.00 0.00 0.00 3.06
312 313 3.552384 GTGGTGGGTGGGTCGTCA 61.552 66.667 0.00 0.00 0.00 4.35
313 314 4.675029 CGTGGTGGGTGGGTCGTC 62.675 72.222 0.00 0.00 0.00 4.20
315 316 4.373116 CTCGTGGTGGGTGGGTCG 62.373 72.222 0.00 0.00 0.00 4.79
316 317 1.474332 TTACTCGTGGTGGGTGGGTC 61.474 60.000 0.00 0.00 0.00 4.46
317 318 1.459921 TTACTCGTGGTGGGTGGGT 60.460 57.895 0.00 0.00 0.00 4.51
318 319 1.004200 GTTACTCGTGGTGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
319 320 0.320421 CAGTTACTCGTGGTGGGTGG 60.320 60.000 0.00 0.00 0.00 4.61
320 321 0.949105 GCAGTTACTCGTGGTGGGTG 60.949 60.000 0.00 0.00 0.00 4.61
321 322 1.370064 GCAGTTACTCGTGGTGGGT 59.630 57.895 0.00 0.00 0.00 4.51
322 323 1.375523 GGCAGTTACTCGTGGTGGG 60.376 63.158 0.00 0.00 0.00 4.61
323 324 0.250124 TTGGCAGTTACTCGTGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
324 325 1.732259 GATTGGCAGTTACTCGTGGTG 59.268 52.381 0.00 0.00 0.00 4.17
325 326 1.671850 CGATTGGCAGTTACTCGTGGT 60.672 52.381 0.00 0.00 0.00 4.16
326 327 0.999406 CGATTGGCAGTTACTCGTGG 59.001 55.000 0.00 0.00 0.00 4.94
327 328 0.370273 GCGATTGGCAGTTACTCGTG 59.630 55.000 0.00 0.00 42.87 4.35
328 329 1.076533 CGCGATTGGCAGTTACTCGT 61.077 55.000 0.00 0.00 43.84 4.18
329 330 1.631072 CGCGATTGGCAGTTACTCG 59.369 57.895 0.00 0.00 43.84 4.18
330 331 1.348594 GCGCGATTGGCAGTTACTC 59.651 57.895 12.10 0.00 43.84 2.59
331 332 2.452813 CGCGCGATTGGCAGTTACT 61.453 57.895 28.94 0.00 43.84 2.24
332 333 1.762222 ATCGCGCGATTGGCAGTTAC 61.762 55.000 37.68 0.00 43.84 2.50
333 334 1.487452 GATCGCGCGATTGGCAGTTA 61.487 55.000 41.80 15.04 43.84 2.24
334 335 2.813179 GATCGCGCGATTGGCAGTT 61.813 57.895 41.80 22.14 43.84 3.16
335 336 3.264897 GATCGCGCGATTGGCAGT 61.265 61.111 41.80 22.95 43.84 4.40
336 337 4.345547 CGATCGCGCGATTGGCAG 62.346 66.667 40.07 26.85 43.84 4.85
347 348 3.107104 TTTCAATGCCCGCGATCGC 62.107 57.895 29.80 29.80 37.85 4.58
348 349 1.297598 GTTTCAATGCCCGCGATCG 60.298 57.895 11.69 11.69 0.00 3.69
349 350 0.028110 GAGTTTCAATGCCCGCGATC 59.972 55.000 8.23 0.00 0.00 3.69
350 351 1.705337 CGAGTTTCAATGCCCGCGAT 61.705 55.000 8.23 0.00 0.00 4.58
351 352 2.387445 CGAGTTTCAATGCCCGCGA 61.387 57.895 8.23 0.00 0.00 5.87
352 353 2.098298 CGAGTTTCAATGCCCGCG 59.902 61.111 0.00 0.00 0.00 6.46
353 354 1.134694 GTCGAGTTTCAATGCCCGC 59.865 57.895 0.00 0.00 0.00 6.13
354 355 1.062587 GATGTCGAGTTTCAATGCCCG 59.937 52.381 0.00 0.00 0.00 6.13
355 356 2.352960 GAGATGTCGAGTTTCAATGCCC 59.647 50.000 0.00 0.00 0.00 5.36
356 357 3.665173 GAGATGTCGAGTTTCAATGCC 57.335 47.619 0.00 0.00 0.00 4.40
369 370 1.291877 ACGTTGCAAGGCGAGATGTC 61.292 55.000 18.61 0.00 0.00 3.06
370 371 0.884704 AACGTTGCAAGGCGAGATGT 60.885 50.000 18.61 0.00 0.00 3.06
371 372 0.179215 GAACGTTGCAAGGCGAGATG 60.179 55.000 18.61 0.00 0.00 2.90
372 373 1.298859 GGAACGTTGCAAGGCGAGAT 61.299 55.000 18.61 3.45 0.00 2.75
373 374 1.959226 GGAACGTTGCAAGGCGAGA 60.959 57.895 18.61 0.00 0.00 4.04
374 375 2.556287 GGAACGTTGCAAGGCGAG 59.444 61.111 18.61 2.03 0.00 5.03
375 376 2.975799 GGGAACGTTGCAAGGCGA 60.976 61.111 21.74 0.00 0.00 5.54
376 377 4.038080 GGGGAACGTTGCAAGGCG 62.038 66.667 21.74 13.09 0.00 5.52
377 378 2.597510 AGGGGAACGTTGCAAGGC 60.598 61.111 21.74 3.69 0.00 4.35
378 379 1.971695 GGAGGGGAACGTTGCAAGG 60.972 63.158 21.74 17.21 0.00 3.61
379 380 1.971695 GGGAGGGGAACGTTGCAAG 60.972 63.158 21.74 0.00 0.00 4.01
380 381 2.114411 GGGAGGGGAACGTTGCAA 59.886 61.111 21.74 0.00 0.00 4.08
381 382 3.961414 GGGGAGGGGAACGTTGCA 61.961 66.667 21.74 0.00 0.00 4.08
382 383 3.623703 GAGGGGAGGGGAACGTTGC 62.624 68.421 11.85 11.85 0.00 4.17
383 384 2.669240 GAGGGGAGGGGAACGTTG 59.331 66.667 5.00 0.00 0.00 4.10
384 385 3.001406 CGAGGGGAGGGGAACGTT 61.001 66.667 0.00 0.00 0.00 3.99
385 386 3.959329 CTCGAGGGGAGGGGAACGT 62.959 68.421 3.91 0.00 39.22 3.99
386 387 3.148279 CTCGAGGGGAGGGGAACG 61.148 72.222 3.91 0.00 39.22 3.95
387 388 3.471806 GCTCGAGGGGAGGGGAAC 61.472 72.222 15.58 0.00 43.36 3.62
396 397 1.745115 TTTGATTGCCGCTCGAGGG 60.745 57.895 21.77 21.77 0.00 4.30
401 402 1.418373 GTTTGGTTTGATTGCCGCTC 58.582 50.000 0.00 0.00 0.00 5.03
418 419 4.502431 GGTGGATTTGATTTGGTTTCGGTT 60.502 41.667 0.00 0.00 0.00 4.44
419 420 3.006430 GGTGGATTTGATTTGGTTTCGGT 59.994 43.478 0.00 0.00 0.00 4.69
420 421 3.584834 GGTGGATTTGATTTGGTTTCGG 58.415 45.455 0.00 0.00 0.00 4.30
421 422 3.584834 GGGTGGATTTGATTTGGTTTCG 58.415 45.455 0.00 0.00 0.00 3.46
422 423 3.257127 TCGGGTGGATTTGATTTGGTTTC 59.743 43.478 0.00 0.00 0.00 2.78
457 458 4.796231 CGAGTTGGGTCGGCCGAG 62.796 72.222 31.97 10.66 36.26 4.63
484 485 1.284408 GTGCTATCCTCGCTCGGAG 59.716 63.158 0.00 0.00 42.75 4.63
489 490 1.522569 GGTTGGTGCTATCCTCGCT 59.477 57.895 0.00 0.00 0.00 4.93
490 491 1.523938 GGGTTGGTGCTATCCTCGC 60.524 63.158 0.00 0.00 0.00 5.03
491 492 0.251916 TTGGGTTGGTGCTATCCTCG 59.748 55.000 0.00 0.00 0.00 4.63
492 493 1.004277 TGTTGGGTTGGTGCTATCCTC 59.996 52.381 0.00 0.00 0.00 3.71
493 494 1.072266 TGTTGGGTTGGTGCTATCCT 58.928 50.000 0.00 0.00 0.00 3.24
494 495 1.173913 GTGTTGGGTTGGTGCTATCC 58.826 55.000 0.00 0.00 0.00 2.59
495 496 0.802494 CGTGTTGGGTTGGTGCTATC 59.198 55.000 0.00 0.00 0.00 2.08
496 497 1.241315 GCGTGTTGGGTTGGTGCTAT 61.241 55.000 0.00 0.00 0.00 2.97
497 498 1.894756 GCGTGTTGGGTTGGTGCTA 60.895 57.895 0.00 0.00 0.00 3.49
498 499 3.216292 GCGTGTTGGGTTGGTGCT 61.216 61.111 0.00 0.00 0.00 4.40
718 730 1.381599 AGCAGCAGAGAGAGGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
721 733 1.685077 TGGAGCAGCAGAGAGAGGG 60.685 63.158 0.00 0.00 0.00 4.30
723 735 0.971959 AGGTGGAGCAGCAGAGAGAG 60.972 60.000 0.00 0.00 33.95 3.20
724 736 0.969917 GAGGTGGAGCAGCAGAGAGA 60.970 60.000 0.00 0.00 33.95 3.10
725 737 1.256361 TGAGGTGGAGCAGCAGAGAG 61.256 60.000 0.00 0.00 33.95 3.20
726 738 1.228988 TGAGGTGGAGCAGCAGAGA 60.229 57.895 0.00 0.00 33.95 3.10
727 739 1.079266 GTGAGGTGGAGCAGCAGAG 60.079 63.158 0.00 0.00 33.95 3.35
728 740 1.534959 AGTGAGGTGGAGCAGCAGA 60.535 57.895 0.00 0.00 33.95 4.26
817 832 1.804748 GTCGCGTCCTTCCAAATTTCT 59.195 47.619 5.77 0.00 0.00 2.52
841 856 3.358076 CTTGACTCCTCGGTCGGGC 62.358 68.421 0.00 0.00 38.91 6.13
865 880 4.767841 ACTGACAGCGCGCTCTCG 62.768 66.667 34.28 25.20 39.07 4.04
905 920 3.137687 TGGAAGACAGAGCACGCA 58.862 55.556 0.00 0.00 0.00 5.24
916 931 2.291153 CCCTCAAATCTTGGCTGGAAGA 60.291 50.000 0.00 0.00 36.41 2.87
917 932 2.097825 CCCTCAAATCTTGGCTGGAAG 58.902 52.381 0.00 0.00 0.00 3.46
918 933 1.272648 CCCCTCAAATCTTGGCTGGAA 60.273 52.381 0.00 0.00 0.00 3.53
919 934 0.332632 CCCCTCAAATCTTGGCTGGA 59.667 55.000 0.00 0.00 0.00 3.86
922 937 1.006400 CCTTCCCCTCAAATCTTGGCT 59.994 52.381 0.00 0.00 0.00 4.75
1108 1123 3.138798 GAGGTAGAGCGCGTGGGA 61.139 66.667 8.43 0.00 0.00 4.37
1488 1917 3.930012 GGGGATTCGGCGAGGGAG 61.930 72.222 10.46 0.00 0.00 4.30
1576 2005 0.889186 GTGGATGTGGTGGTGGTGAC 60.889 60.000 0.00 0.00 0.00 3.67
1650 2091 1.360911 GATCTCGGCGAGGTCCTTC 59.639 63.158 34.17 19.73 34.02 3.46
1677 2118 3.875727 CCTTGAGGAAGTACTCGTCGATA 59.124 47.826 0.00 0.00 41.07 2.92
1789 2230 3.295973 GAGGTAAGCTGATCTGAGGACT 58.704 50.000 3.42 0.00 0.00 3.85
1811 2252 1.956477 GGGATGGACCGATGGAAAATG 59.044 52.381 0.00 0.00 40.11 2.32
1878 2323 3.944015 CCCTGAAGAAGCAAGAATCGATT 59.056 43.478 11.20 11.20 0.00 3.34
1882 2327 3.277715 CCTCCCTGAAGAAGCAAGAATC 58.722 50.000 0.00 0.00 0.00 2.52
1956 2401 4.828296 TCCCGTACCCTCCTCCGC 62.828 72.222 0.00 0.00 0.00 5.54
2003 2448 1.617947 ATGCCTTCGTCTCCTGTCCC 61.618 60.000 0.00 0.00 0.00 4.46
2107 2552 1.760613 ACGAAACTCACCTTGACCTCA 59.239 47.619 0.00 0.00 0.00 3.86
2120 2565 4.935808 GGGTTACAGATGATGAACGAAACT 59.064 41.667 0.00 0.00 0.00 2.66
2122 2567 4.693566 GTGGGTTACAGATGATGAACGAAA 59.306 41.667 0.00 0.00 0.00 3.46
2155 2600 5.236478 TCCAAAACTGAAGCTCGTAAAGAAG 59.764 40.000 0.00 0.00 0.00 2.85
2158 2603 5.179368 TGATCCAAAACTGAAGCTCGTAAAG 59.821 40.000 0.00 0.00 0.00 1.85
2164 2610 3.935203 TCGATGATCCAAAACTGAAGCTC 59.065 43.478 0.00 0.00 0.00 4.09
2190 2638 2.746362 GCTCAAGCTCTACTGCACATTT 59.254 45.455 0.00 0.00 38.21 2.32
2224 2673 3.206964 TGCTCACCTACTCTATGTCGAG 58.793 50.000 0.00 0.00 37.07 4.04
2225 2674 3.206964 CTGCTCACCTACTCTATGTCGA 58.793 50.000 0.00 0.00 0.00 4.20
2226 2675 2.292016 CCTGCTCACCTACTCTATGTCG 59.708 54.545 0.00 0.00 0.00 4.35
2227 2676 2.035321 GCCTGCTCACCTACTCTATGTC 59.965 54.545 0.00 0.00 0.00 3.06
2228 2677 2.035632 GCCTGCTCACCTACTCTATGT 58.964 52.381 0.00 0.00 0.00 2.29
2229 2678 1.000827 CGCCTGCTCACCTACTCTATG 60.001 57.143 0.00 0.00 0.00 2.23
2230 2679 1.323412 CGCCTGCTCACCTACTCTAT 58.677 55.000 0.00 0.00 0.00 1.98
2231 2680 0.752009 CCGCCTGCTCACCTACTCTA 60.752 60.000 0.00 0.00 0.00 2.43
2232 2681 2.055042 CCGCCTGCTCACCTACTCT 61.055 63.158 0.00 0.00 0.00 3.24
2233 2682 1.395826 ATCCGCCTGCTCACCTACTC 61.396 60.000 0.00 0.00 0.00 2.59
2234 2683 0.978146 AATCCGCCTGCTCACCTACT 60.978 55.000 0.00 0.00 0.00 2.57
2235 2684 0.530870 GAATCCGCCTGCTCACCTAC 60.531 60.000 0.00 0.00 0.00 3.18
2236 2685 0.975556 TGAATCCGCCTGCTCACCTA 60.976 55.000 0.00 0.00 0.00 3.08
2237 2686 1.841302 TTGAATCCGCCTGCTCACCT 61.841 55.000 0.00 0.00 0.00 4.00
2238 2687 1.377202 TTGAATCCGCCTGCTCACC 60.377 57.895 0.00 0.00 0.00 4.02
2239 2688 1.796796 GTTGAATCCGCCTGCTCAC 59.203 57.895 0.00 0.00 0.00 3.51
2240 2689 1.741401 CGTTGAATCCGCCTGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
2241 2690 1.019278 TTCGTTGAATCCGCCTGCTC 61.019 55.000 0.00 0.00 0.00 4.26
2242 2691 0.605319 TTTCGTTGAATCCGCCTGCT 60.605 50.000 0.00 0.00 0.00 4.24
2243 2692 0.451783 ATTTCGTTGAATCCGCCTGC 59.548 50.000 0.00 0.00 0.00 4.85
2244 2693 1.795162 GCATTTCGTTGAATCCGCCTG 60.795 52.381 0.00 0.00 0.00 4.85
2245 2694 0.451783 GCATTTCGTTGAATCCGCCT 59.548 50.000 0.00 0.00 0.00 5.52
2246 2695 0.170116 TGCATTTCGTTGAATCCGCC 59.830 50.000 0.00 0.00 0.00 6.13
2247 2696 1.259316 GTGCATTTCGTTGAATCCGC 58.741 50.000 0.00 0.00 0.00 5.54
2248 2697 1.523501 CGTGCATTTCGTTGAATCCG 58.476 50.000 0.00 0.00 0.00 4.18
2249 2698 1.895051 CCGTGCATTTCGTTGAATCC 58.105 50.000 0.00 0.00 0.00 3.01
2250 2699 1.135689 AGCCGTGCATTTCGTTGAATC 60.136 47.619 0.00 0.00 0.00 2.52
2251 2700 0.881118 AGCCGTGCATTTCGTTGAAT 59.119 45.000 0.00 0.00 0.00 2.57
2252 2701 0.665835 AAGCCGTGCATTTCGTTGAA 59.334 45.000 0.00 0.00 0.00 2.69
2253 2702 0.040514 CAAGCCGTGCATTTCGTTGA 60.041 50.000 0.00 0.00 0.00 3.18
2254 2703 1.003262 CCAAGCCGTGCATTTCGTTG 61.003 55.000 0.00 0.00 0.00 4.10
2255 2704 1.285641 CCAAGCCGTGCATTTCGTT 59.714 52.632 0.00 0.00 0.00 3.85
2256 2705 1.452145 AACCAAGCCGTGCATTTCGT 61.452 50.000 0.00 0.00 0.00 3.85
2291 2740 0.251341 AAGCCACTCATTCACCCACC 60.251 55.000 0.00 0.00 0.00 4.61
2335 2784 8.618702 ATGATAGTCATAATCAGCAAAAGGAG 57.381 34.615 0.00 0.00 34.88 3.69
2408 2860 2.603171 AACCAATTGCCACCCCGG 60.603 61.111 0.00 0.00 38.11 5.73
2451 2903 4.603989 AACAAACAATGCATCCATGTGA 57.396 36.364 0.00 0.00 0.00 3.58
2582 3036 8.804688 TGCAGGTTATAAAATAACACACAAAC 57.195 30.769 10.92 0.00 0.00 2.93
2626 3081 3.134458 CCAATATTCGGAGAACAGAGCC 58.866 50.000 0.00 0.00 45.90 4.70
2675 3132 8.599774 GCAAATGAGCTAAACAAGTTTAAAACA 58.400 29.630 6.82 7.14 34.95 2.83
2690 3147 2.772077 TTACCGTGGCAAATGAGCTA 57.228 45.000 0.00 0.00 34.17 3.32
2704 3161 6.338937 ACAGCCTATCTTTAGTTCTTTACCG 58.661 40.000 0.00 0.00 0.00 4.02
2772 3229 9.614792 AGGGTTTGTATCTTTAAAGCTGTATAG 57.385 33.333 10.51 0.00 35.33 1.31
2774 3231 8.739972 CAAGGGTTTGTATCTTTAAAGCTGTAT 58.260 33.333 10.51 1.65 35.33 2.29
2795 3253 5.248640 TCTCTATCAAAAGAAGCACAAGGG 58.751 41.667 0.00 0.00 0.00 3.95
2882 3341 4.109766 GCGTCACAGTAATAGTATGTGCA 58.890 43.478 0.00 0.00 43.16 4.57
2883 3342 4.360563 AGCGTCACAGTAATAGTATGTGC 58.639 43.478 0.00 0.00 43.16 4.57
3058 3518 1.076485 GGCCACCAGCATCTTGGAT 60.076 57.895 0.00 0.00 46.50 3.41
3316 3797 4.956700 TCCATATGTCCAGCCTAGCTATAC 59.043 45.833 1.24 0.00 36.40 1.47
3447 3929 2.550180 GAGGACCAAAGAGAAACAGCAC 59.450 50.000 0.00 0.00 0.00 4.40
3472 3956 0.320073 CAGTGCCAAGGGTGCATTTG 60.320 55.000 0.00 0.00 41.46 2.32
3544 4029 3.054728 CCCACCAACACCACTATCACATA 60.055 47.826 0.00 0.00 0.00 2.29
3572 4057 2.567169 CAGTCAGGACAGTCAACCCATA 59.433 50.000 2.17 0.00 0.00 2.74
3576 4061 2.910688 TTCAGTCAGGACAGTCAACC 57.089 50.000 2.17 0.00 0.00 3.77
3613 4099 1.854280 AGGCCTAGCTAGTACTGACCT 59.146 52.381 19.31 12.09 0.00 3.85
3675 4182 0.914902 GCCTAAAGGGAGGGGTCAGT 60.915 60.000 0.00 0.00 37.06 3.41
3691 4198 1.379044 GCTACAGCCACCATTGCCT 60.379 57.895 0.00 0.00 34.31 4.75
3711 4218 8.121305 TCAAAGGTTTGATGTGCAAGTAATAT 57.879 30.769 0.87 0.00 41.88 1.28
3712 4219 7.309133 CCTCAAAGGTTTGATGTGCAAGTAATA 60.309 37.037 5.63 0.00 45.26 0.98
3713 4220 6.403866 TCAAAGGTTTGATGTGCAAGTAAT 57.596 33.333 0.87 0.00 41.88 1.89
3740 4248 3.071874 ACACCACCACCACTATGAATG 57.928 47.619 0.00 0.00 0.00 2.67
3741 4249 3.806949 AACACCACCACCACTATGAAT 57.193 42.857 0.00 0.00 0.00 2.57
3742 4250 3.117851 TGAAACACCACCACCACTATGAA 60.118 43.478 0.00 0.00 0.00 2.57
3743 4251 2.439880 TGAAACACCACCACCACTATGA 59.560 45.455 0.00 0.00 0.00 2.15
3744 4252 2.552315 GTGAAACACCACCACCACTATG 59.448 50.000 0.00 0.00 36.32 2.23
3793 4304 6.677920 GCGATAAACAGCACCAAACTAATCAT 60.678 38.462 0.00 0.00 0.00 2.45
3820 4332 5.635120 ACTTCCTAAAGGCAAACTTCTGAT 58.365 37.500 0.00 0.00 38.85 2.90
3829 4341 4.282496 TGTTCCAAACTTCCTAAAGGCAA 58.718 39.130 0.00 0.00 36.78 4.52
3864 4381 5.324784 AGTTCTTTGGAAACTGTTGAACC 57.675 39.130 12.67 9.10 34.62 3.62
4127 4644 6.300434 GCGTAATTGACAATGCAACAAAAATG 59.700 34.615 0.34 0.00 0.00 2.32
4128 4645 6.018425 TGCGTAATTGACAATGCAACAAAAAT 60.018 30.769 8.72 0.00 34.79 1.82
4129 4646 5.291858 TGCGTAATTGACAATGCAACAAAAA 59.708 32.000 8.72 0.00 34.79 1.94
4130 4647 4.805719 TGCGTAATTGACAATGCAACAAAA 59.194 33.333 8.72 0.00 34.79 2.44
4131 4648 4.363138 TGCGTAATTGACAATGCAACAAA 58.637 34.783 8.72 0.00 34.79 2.83
4132 4649 3.969899 TGCGTAATTGACAATGCAACAA 58.030 36.364 8.72 0.00 34.79 2.83
4133 4650 3.004210 ACTGCGTAATTGACAATGCAACA 59.996 39.130 11.48 4.34 37.19 3.33
4134 4651 3.564511 ACTGCGTAATTGACAATGCAAC 58.435 40.909 11.48 6.02 37.19 4.17
4135 4652 3.913548 ACTGCGTAATTGACAATGCAA 57.086 38.095 11.48 0.00 37.19 4.08
4136 4653 3.913548 AACTGCGTAATTGACAATGCA 57.086 38.095 10.29 10.29 36.28 3.96
4137 4654 4.444056 ACAAAACTGCGTAATTGACAATGC 59.556 37.500 0.34 1.78 0.00 3.56
4138 4655 6.345723 GGAACAAAACTGCGTAATTGACAATG 60.346 38.462 0.34 0.00 0.00 2.82
4139 4656 5.689961 GGAACAAAACTGCGTAATTGACAAT 59.310 36.000 0.00 0.00 0.00 2.71
4168 4685 8.212317 TGGGTACAAAAGTAACTGAAGTAAAC 57.788 34.615 0.00 0.00 0.00 2.01
4185 4710 1.538876 AGGGAGCAGCTGGGTACAA 60.539 57.895 17.12 0.00 0.00 2.41
4437 4966 1.076549 TGGTCATTGGAGGTTGGGC 59.923 57.895 0.00 0.00 0.00 5.36
4612 5141 2.164624 GCTGTAGATGTCGGAGTTCTGT 59.835 50.000 1.00 0.00 0.00 3.41
4708 5237 1.374125 CACGGCGTGGATCACTGAA 60.374 57.895 31.19 0.00 31.34 3.02
4816 5345 0.463833 GCCCGTATTTGGACTCCAGG 60.464 60.000 0.00 0.00 33.81 4.45
4923 5452 0.596577 CTTGGTCTTCTCGTCGTCCA 59.403 55.000 0.00 0.00 0.00 4.02
4938 5467 1.347817 GACGCTCTTCTCGTGCTTGG 61.348 60.000 0.00 0.00 40.59 3.61
4999 5528 0.605589 CCTGGAAGACGTTGGGGAAC 60.606 60.000 0.00 0.00 34.07 3.62
5260 5792 0.392193 ACGAGCTCCAGGCATTTCTG 60.392 55.000 8.47 0.00 44.79 3.02
5314 5846 3.299503 AGAAGCCAGGCAAAAAGAAAGA 58.700 40.909 15.80 0.00 0.00 2.52
5337 5869 7.433425 GCCAGATTTTGAATGATTAACAGCTAC 59.567 37.037 0.00 0.00 0.00 3.58
5389 5921 1.995066 ACACCATCTGCCCGGATGA 60.995 57.895 16.64 0.00 44.01 2.92
5395 5927 0.465097 CCAGATCACACCATCTGCCC 60.465 60.000 5.12 0.00 45.96 5.36
5396 5928 0.465097 CCCAGATCACACCATCTGCC 60.465 60.000 5.12 0.00 45.96 4.85
5437 5969 3.658636 TATAGAAGCCGGTGCGATCGC 62.659 57.143 32.48 32.48 44.33 4.58
5486 6019 5.591472 TGTCCAAATTCTCCAGAATGCATAG 59.409 40.000 0.00 0.00 43.41 2.23
5492 6025 5.651139 CACATCTGTCCAAATTCTCCAGAAT 59.349 40.000 0.00 0.00 45.91 2.40
5493 6026 5.005740 CACATCTGTCCAAATTCTCCAGAA 58.994 41.667 0.00 0.00 35.93 3.02
5494 6027 4.582869 CACATCTGTCCAAATTCTCCAGA 58.417 43.478 0.00 0.00 36.67 3.86
5539 6076 4.439153 CCCTGCTATTATGTGCAACTTGTG 60.439 45.833 0.00 0.00 38.81 3.33
5542 6079 3.968265 ACCCTGCTATTATGTGCAACTT 58.032 40.909 0.00 0.00 38.81 2.66
5551 6088 4.081697 GGCACAAAACAACCCTGCTATTAT 60.082 41.667 0.00 0.00 0.00 1.28
5552 6089 3.257127 GGCACAAAACAACCCTGCTATTA 59.743 43.478 0.00 0.00 0.00 0.98
5553 6090 2.037121 GGCACAAAACAACCCTGCTATT 59.963 45.455 0.00 0.00 0.00 1.73
5554 6091 1.618343 GGCACAAAACAACCCTGCTAT 59.382 47.619 0.00 0.00 0.00 2.97
5555 6092 1.036707 GGCACAAAACAACCCTGCTA 58.963 50.000 0.00 0.00 0.00 3.49
5556 6093 0.975040 TGGCACAAAACAACCCTGCT 60.975 50.000 0.00 0.00 31.92 4.24
5557 6094 1.519719 TGGCACAAAACAACCCTGC 59.480 52.632 0.00 0.00 31.92 4.85
5643 6181 6.255670 TCACTGTTGAACATATGCTTATCGTC 59.744 38.462 1.58 0.00 0.00 4.20
5653 6191 3.009473 AGGGTGCTCACTGTTGAACATAT 59.991 43.478 0.00 0.00 30.58 1.78
5657 6195 2.543777 TAGGGTGCTCACTGTTGAAC 57.456 50.000 0.00 0.00 0.00 3.18
5709 6247 2.319136 ACGTAGGCTTGTTGTCAACA 57.681 45.000 14.48 14.48 40.21 3.33
5710 6248 3.181504 ACAAACGTAGGCTTGTTGTCAAC 60.182 43.478 8.86 8.86 34.73 3.18
5711 6249 3.011119 ACAAACGTAGGCTTGTTGTCAA 58.989 40.909 0.00 0.00 34.73 3.18
5712 6250 2.634600 ACAAACGTAGGCTTGTTGTCA 58.365 42.857 0.00 0.00 34.73 3.58
5713 6251 3.311596 AGAACAAACGTAGGCTTGTTGTC 59.688 43.478 18.64 8.06 44.02 3.18
5714 6252 3.275999 AGAACAAACGTAGGCTTGTTGT 58.724 40.909 18.64 13.26 44.02 3.32
5719 6257 2.132762 CGTGAGAACAAACGTAGGCTT 58.867 47.619 0.00 0.00 35.13 4.35
5760 6298 9.283768 TGTAATGAACTCTGCTTTGAGATTTTA 57.716 29.630 8.49 0.00 37.50 1.52
5776 6314 9.101828 GCAGCTTGCAAAAACATGTAATGAACT 62.102 37.037 0.00 0.00 45.54 3.01
5777 6315 7.048178 GCAGCTTGCAAAAACATGTAATGAAC 61.048 38.462 0.00 0.00 45.54 3.18
5778 6316 5.050227 GCAGCTTGCAAAAACATGTAATGAA 60.050 36.000 0.00 0.00 45.54 2.57
5779 6317 4.448395 GCAGCTTGCAAAAACATGTAATGA 59.552 37.500 0.00 0.00 45.54 2.57
5781 6319 4.996062 GCAGCTTGCAAAAACATGTAAT 57.004 36.364 0.00 0.00 44.26 1.89
5796 6389 3.349006 CGTGCCGTGAAGCAGCTT 61.349 61.111 7.60 7.60 45.14 3.74
5821 6414 2.033801 GTGCCAAAATGATCTAGCGCAT 59.966 45.455 11.47 0.00 0.00 4.73
5827 6420 3.696051 GAGCAAGGTGCCAAAATGATCTA 59.304 43.478 0.00 0.00 46.52 1.98
5831 6424 0.597568 CGAGCAAGGTGCCAAAATGA 59.402 50.000 0.00 0.00 46.52 2.57
5902 6495 5.123344 TGAAAAGTATCGTCTCATCGACTCA 59.877 40.000 0.00 0.00 42.56 3.41
6011 6607 5.163804 TGGATTGTACGAAATTGTCCAATCG 60.164 40.000 10.96 2.44 39.19 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.