Multiple sequence alignment - TraesCS5D01G335200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G335200 chr5D 100.000 7684 0 0 1 7684 424346063 424353746 0.000000e+00 14190.0
1 TraesCS5D01G335200 chr5D 90.716 377 28 5 2075 2446 330703692 330703318 5.360000e-136 496.0
2 TraesCS5D01G335200 chr5D 97.260 219 6 0 1 219 424324074 424324292 9.420000e-99 372.0
3 TraesCS5D01G335200 chr5B 97.051 3662 89 3 4023 7667 513605563 513609222 0.000000e+00 6146.0
4 TraesCS5D01G335200 chr5B 92.098 1797 66 33 2062 3822 513598510 513600266 0.000000e+00 2462.0
5 TraesCS5D01G335200 chr5B 90.572 1644 81 23 410 2011 513596957 513598568 0.000000e+00 2109.0
6 TraesCS5D01G335200 chr5B 92.208 693 51 3 6723 7413 513661413 513662104 0.000000e+00 977.0
7 TraesCS5D01G335200 chr5B 87.644 607 48 11 210 802 513595264 513595857 0.000000e+00 680.0
8 TraesCS5D01G335200 chr5B 88.718 390 35 8 2062 2447 383541529 383541913 1.170000e-127 468.0
9 TraesCS5D01G335200 chr5B 96.833 221 7 0 3842 4062 513605344 513605564 3.390000e-98 370.0
10 TraesCS5D01G335200 chr5B 82.235 349 37 17 1719 2062 70912107 70912435 2.110000e-70 278.0
11 TraesCS5D01G335200 chr5B 86.471 170 13 4 1719 1888 383541343 383541502 2.200000e-40 178.0
12 TraesCS5D01G335200 chr5A 97.316 3018 77 3 4024 7038 538319857 538322873 0.000000e+00 5121.0
13 TraesCS5D01G335200 chr5A 91.211 1354 60 16 392 1717 538317056 538318378 0.000000e+00 1786.0
14 TraesCS5D01G335200 chr5A 92.497 893 45 8 2667 3537 538318373 538319265 0.000000e+00 1258.0
15 TraesCS5D01G335200 chr5A 93.978 631 31 3 7040 7667 538322981 538323607 0.000000e+00 948.0
16 TraesCS5D01G335200 chr5A 95.890 292 11 1 3535 3825 538319346 538319637 9.030000e-129 472.0
17 TraesCS5D01G335200 chr5A 86.025 322 20 6 2075 2393 24394280 24394579 9.620000e-84 322.0
18 TraesCS5D01G335200 chr5A 86.752 234 9 1 3754 3987 538319638 538319849 2.770000e-59 241.0
19 TraesCS5D01G335200 chr5A 90.751 173 13 3 222 392 538316657 538316828 2.160000e-55 228.0
20 TraesCS5D01G335200 chr5A 89.571 163 15 2 1718 1880 24393959 24394119 1.010000e-48 206.0
21 TraesCS5D01G335200 chr5A 83.556 225 19 14 2 219 485038714 485038927 2.190000e-45 195.0
22 TraesCS5D01G335200 chr5A 85.492 193 17 9 2075 2259 533749112 533748923 2.830000e-44 191.0
23 TraesCS5D01G335200 chr5A 91.071 112 10 0 1765 1876 24394104 24394215 1.340000e-32 152.0
24 TraesCS5D01G335200 chr5A 95.745 47 1 1 357 403 657060031 657060076 2.970000e-09 75.0
25 TraesCS5D01G335200 chr7D 86.096 748 78 16 1887 2633 92864358 92863636 0.000000e+00 782.0
26 TraesCS5D01G335200 chr7D 97.260 219 6 0 1 219 182537051 182536833 9.420000e-99 372.0
27 TraesCS5D01G335200 chr7D 89.399 283 23 7 2066 2346 93020202 93019925 4.410000e-92 350.0
28 TraesCS5D01G335200 chr7D 85.772 246 23 12 1 240 384673702 384673941 4.600000e-62 250.0
29 TraesCS5D01G335200 chr7D 83.267 251 26 14 1 242 377478208 377478451 4.670000e-52 217.0
30 TraesCS5D01G335200 chr7D 97.619 42 1 0 360 401 588680004 588679963 1.070000e-08 73.1
31 TraesCS5D01G335200 chr7D 93.617 47 3 0 6939 6985 554586102 554586148 3.850000e-08 71.3
32 TraesCS5D01G335200 chr7B 90.121 577 50 6 2058 2633 45343287 45342717 0.000000e+00 743.0
33 TraesCS5D01G335200 chr7B 88.571 560 54 8 2072 2630 45453364 45452814 0.000000e+00 671.0
34 TraesCS5D01G335200 chr7B 88.034 234 18 9 2062 2288 426540369 426540139 1.270000e-67 268.0
35 TraesCS5D01G335200 chr7B 93.605 172 11 0 2276 2447 426540120 426539949 2.750000e-64 257.0
36 TraesCS5D01G335200 chr7B 90.058 171 14 2 1720 1888 426540565 426540396 1.300000e-52 219.0
37 TraesCS5D01G335200 chr7B 89.394 66 3 4 5686 5748 598302319 598302255 6.390000e-11 80.5
38 TraesCS5D01G335200 chr2D 91.078 538 27 11 4266 4793 205891823 205891297 0.000000e+00 708.0
39 TraesCS5D01G335200 chr2D 98.182 220 4 0 1 220 411167941 411167722 1.210000e-102 385.0
40 TraesCS5D01G335200 chr2D 84.190 253 30 8 1 251 285137488 285137244 3.580000e-58 237.0
41 TraesCS5D01G335200 chr2D 89.937 159 16 0 1718 1876 434684662 434684820 1.010000e-48 206.0
42 TraesCS5D01G335200 chr1D 97.309 223 5 1 1 223 370892990 370893211 2.020000e-100 377.0
43 TraesCS5D01G335200 chr1D 90.566 53 5 0 5573 5625 338826200 338826148 3.850000e-08 71.3
44 TraesCS5D01G335200 chr4A 93.636 220 13 1 1 220 91832844 91832626 2.070000e-85 327.0
45 TraesCS5D01G335200 chr4A 93.607 219 14 0 1 219 187332361 187332143 2.070000e-85 327.0
46 TraesCS5D01G335200 chr4A 80.972 247 35 12 1 242 269347304 269347065 1.320000e-42 185.0
47 TraesCS5D01G335200 chr4A 94.118 51 1 2 360 410 680371618 680371666 8.270000e-10 76.8
48 TraesCS5D01G335200 chr6B 90.270 185 14 3 2480 2662 424082075 424082257 9.970000e-59 239.0
49 TraesCS5D01G335200 chr6B 90.217 184 15 3 2480 2662 424304788 424304969 3.580000e-58 237.0
50 TraesCS5D01G335200 chr6B 88.514 148 11 2 1719 1864 152690058 152689915 2.850000e-39 174.0
51 TraesCS5D01G335200 chr6B 91.304 46 4 0 6940 6985 198388253 198388208 6.440000e-06 63.9
52 TraesCS5D01G335200 chr4B 81.848 303 36 16 1716 2014 590854750 590855037 3.580000e-58 237.0
53 TraesCS5D01G335200 chr6A 83.806 247 22 12 1 241 351615317 351615083 1.300000e-52 219.0
54 TraesCS5D01G335200 chr6A 81.106 217 30 9 29 240 526565560 526565770 6.170000e-36 163.0
55 TraesCS5D01G335200 chr4D 83.401 247 30 11 1 243 359384333 359384572 1.300000e-52 219.0
56 TraesCS5D01G335200 chr4D 86.076 158 14 4 1719 1876 287296662 287296811 6.170000e-36 163.0
57 TraesCS5D01G335200 chr2A 82.857 245 29 12 1 240 389834912 389834676 2.810000e-49 207.0
58 TraesCS5D01G335200 chr1B 81.761 159 25 3 2505 2662 68072298 68072143 6.260000e-26 130.0
59 TraesCS5D01G335200 chr1B 92.727 55 3 1 349 402 606388165 606388219 2.300000e-10 78.7
60 TraesCS5D01G335200 chr1B 92.727 55 3 1 349 402 606392957 606393011 2.300000e-10 78.7
61 TraesCS5D01G335200 chr1B 92.727 55 3 1 349 402 606397757 606397811 2.300000e-10 78.7
62 TraesCS5D01G335200 chr1B 91.071 56 3 2 6932 6985 583094502 583094557 2.970000e-09 75.0
63 TraesCS5D01G335200 chr1A 87.755 98 12 0 2565 2662 48580325 48580228 1.750000e-21 115.0
64 TraesCS5D01G335200 chr1A 92.982 57 4 0 6938 6994 396109355 396109411 4.940000e-12 84.2
65 TraesCS5D01G335200 chr1A 97.059 34 1 0 5704 5737 538520824 538520791 2.990000e-04 58.4
66 TraesCS5D01G335200 chr3D 94.521 73 4 0 1718 1790 602781751 602781823 6.300000e-21 113.0
67 TraesCS5D01G335200 chr3D 90.909 55 4 1 6940 6994 126977650 126977703 1.070000e-08 73.1
68 TraesCS5D01G335200 chr7A 97.826 46 1 0 357 402 4762871 4762826 6.390000e-11 80.5
69 TraesCS5D01G335200 chr6D 91.304 46 4 0 6940 6985 104983128 104983083 6.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G335200 chr5D 424346063 424353746 7683 False 14190.000000 14190 100.000000 1 7684 1 chr5D.!!$F2 7683
1 TraesCS5D01G335200 chr5B 513605344 513609222 3878 False 3258.000000 6146 96.942000 3842 7667 2 chr5B.!!$F5 3825
2 TraesCS5D01G335200 chr5B 513595264 513600266 5002 False 1750.333333 2462 90.104667 210 3822 3 chr5B.!!$F4 3612
3 TraesCS5D01G335200 chr5B 513661413 513662104 691 False 977.000000 977 92.208000 6723 7413 1 chr5B.!!$F2 690
4 TraesCS5D01G335200 chr5B 383541343 383541913 570 False 323.000000 468 87.594500 1719 2447 2 chr5B.!!$F3 728
5 TraesCS5D01G335200 chr5A 538316657 538323607 6950 False 1436.285714 5121 92.627857 222 7667 7 chr5A.!!$F4 7445
6 TraesCS5D01G335200 chr5A 24393959 24394579 620 False 226.666667 322 88.889000 1718 2393 3 chr5A.!!$F3 675
7 TraesCS5D01G335200 chr7D 92863636 92864358 722 True 782.000000 782 86.096000 1887 2633 1 chr7D.!!$R1 746
8 TraesCS5D01G335200 chr7B 45342717 45343287 570 True 743.000000 743 90.121000 2058 2633 1 chr7B.!!$R1 575
9 TraesCS5D01G335200 chr7B 45452814 45453364 550 True 671.000000 671 88.571000 2072 2630 1 chr7B.!!$R2 558
10 TraesCS5D01G335200 chr7B 426539949 426540565 616 True 248.000000 268 90.565667 1720 2447 3 chr7B.!!$R4 727
11 TraesCS5D01G335200 chr2D 205891297 205891823 526 True 708.000000 708 91.078000 4266 4793 1 chr2D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.109226 AGAGTTCGTCGTGCTTAGCC 60.109 55.000 0.29 0.00 0.00 3.93 F
161 162 0.178947 GATCGGTGAGGGGGAGATCT 60.179 60.000 0.00 0.00 35.94 2.75 F
188 189 0.179029 CACCCCAGTGTTCGAACCTT 60.179 55.000 24.78 10.58 39.30 3.50 F
214 215 0.610785 TTTGCCAGGACCCGAAATCC 60.611 55.000 0.00 0.00 36.38 3.01 F
1895 3764 1.045407 TGGGGGACTCGATTAATCCG 58.955 55.000 9.87 5.56 32.90 4.18 F
2658 4656 0.033366 TCCATGTCGCCGTATCCATG 59.967 55.000 0.00 0.00 35.56 3.66 F
2661 4659 0.106708 ATGTCGCCGTATCCATGCTT 59.893 50.000 0.00 0.00 0.00 3.91 F
3236 5246 0.250727 CCGCCTTCTGGTCCTTTCAA 60.251 55.000 0.00 0.00 35.27 2.69 F
3826 6023 0.333993 TGCGGGAGGTAGTCCTAACT 59.666 55.000 0.00 0.00 46.06 2.24 F
5013 7260 1.529309 GGACCAAGGCCATCTCCTC 59.471 63.158 5.01 0.00 34.82 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 3142 0.389391 TCTGCTACCCATAGAAGCGC 59.611 55.000 0.00 0.0 39.14 5.92 R
1629 3399 1.127567 AAGCTCAGCCCACCACTGTA 61.128 55.000 0.00 0.0 36.50 2.74 R
1986 3855 2.050714 CAGCAGCAACAACGGCAG 60.051 61.111 0.00 0.0 32.74 4.85 R
2106 4071 2.439701 CAGTGGGGGATGCAGCAG 60.440 66.667 3.51 0.0 0.00 4.24 R
3087 5087 0.038599 AACCAGCATCACCAGCATCA 59.961 50.000 0.00 0.0 0.00 3.07 R
4296 6531 0.890996 GCCTCACCAGTCAAACAGGG 60.891 60.000 0.00 0.0 0.00 4.45 R
4798 7045 0.692476 TTGTGCCCAGTCAGCAGTAT 59.308 50.000 0.00 0.0 41.87 2.12 R
5372 7619 4.533124 TGGGGAGGATAGCGCGGA 62.533 66.667 8.83 0.0 0.00 5.54 R
5576 7823 3.136626 AGGTTGGACAGAAGTAGTGCTTT 59.863 43.478 0.00 0.0 37.59 3.51 R
6966 9215 0.248565 GTACTCCCTCCGTCCCAAAC 59.751 60.000 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.344237 CCCAAGAGGCAATCCACC 57.656 61.111 0.00 0.00 33.74 4.61
21 22 1.383799 CCCAAGAGGCAATCCACCA 59.616 57.895 0.00 0.00 33.74 4.17
22 23 0.967380 CCCAAGAGGCAATCCACCAC 60.967 60.000 0.00 0.00 33.74 4.16
23 24 0.967380 CCAAGAGGCAATCCACCACC 60.967 60.000 0.00 0.00 33.74 4.61
24 25 0.251297 CAAGAGGCAATCCACCACCA 60.251 55.000 0.00 0.00 33.74 4.17
25 26 0.251341 AAGAGGCAATCCACCACCAC 60.251 55.000 0.00 0.00 33.74 4.16
26 27 1.678970 GAGGCAATCCACCACCACC 60.679 63.158 0.00 0.00 33.74 4.61
27 28 2.117206 GGCAATCCACCACCACCA 59.883 61.111 0.00 0.00 0.00 4.17
28 29 2.275380 GGCAATCCACCACCACCAC 61.275 63.158 0.00 0.00 0.00 4.16
29 30 1.530419 GCAATCCACCACCACCACA 60.530 57.895 0.00 0.00 0.00 4.17
30 31 1.805428 GCAATCCACCACCACCACAC 61.805 60.000 0.00 0.00 0.00 3.82
31 32 0.178992 CAATCCACCACCACCACACT 60.179 55.000 0.00 0.00 0.00 3.55
32 33 0.178992 AATCCACCACCACCACACTG 60.179 55.000 0.00 0.00 0.00 3.66
33 34 2.067932 ATCCACCACCACCACACTGG 62.068 60.000 0.00 0.00 45.02 4.00
34 35 2.751731 CCACCACCACCACACTGGA 61.752 63.158 0.00 0.00 40.96 3.86
35 36 1.227943 CACCACCACCACACTGGAG 60.228 63.158 0.00 0.00 40.96 3.86
36 37 1.692749 ACCACCACCACACTGGAGT 60.693 57.895 0.00 0.00 40.96 3.85
37 38 0.399376 ACCACCACCACACTGGAGTA 60.399 55.000 0.00 0.00 40.96 2.59
38 39 0.321671 CCACCACCACACTGGAGTAG 59.678 60.000 0.00 0.00 40.96 2.57
39 40 0.321671 CACCACCACACTGGAGTAGG 59.678 60.000 0.00 0.00 40.96 3.18
40 41 0.836400 ACCACCACACTGGAGTAGGG 60.836 60.000 0.00 0.00 40.96 3.53
41 42 0.836400 CCACCACACTGGAGTAGGGT 60.836 60.000 0.00 0.00 46.36 4.34
42 43 1.551560 CCACCACACTGGAGTAGGGTA 60.552 57.143 0.00 0.00 42.52 3.69
43 44 2.467880 CACCACACTGGAGTAGGGTAT 58.532 52.381 0.00 0.00 42.52 2.73
44 45 2.838202 CACCACACTGGAGTAGGGTATT 59.162 50.000 0.00 0.00 42.52 1.89
45 46 4.028131 CACCACACTGGAGTAGGGTATTA 58.972 47.826 0.00 0.00 42.52 0.98
46 47 4.028825 ACCACACTGGAGTAGGGTATTAC 58.971 47.826 0.00 0.00 42.52 1.89
47 48 4.028131 CCACACTGGAGTAGGGTATTACA 58.972 47.826 0.00 0.00 42.52 2.41
48 49 4.142004 CCACACTGGAGTAGGGTATTACAC 60.142 50.000 0.00 0.00 42.52 2.90
49 50 4.028825 ACACTGGAGTAGGGTATTACACC 58.971 47.826 0.00 0.00 42.62 4.16
72 73 2.995547 GGTGGCCCGAACCAGTAT 59.004 61.111 0.00 0.00 41.46 2.12
73 74 2.214235 GGTGGCCCGAACCAGTATA 58.786 57.895 0.00 0.00 41.46 1.47
74 75 0.542805 GGTGGCCCGAACCAGTATAA 59.457 55.000 0.00 0.00 41.46 0.98
75 76 1.065272 GGTGGCCCGAACCAGTATAAA 60.065 52.381 0.00 0.00 41.46 1.40
76 77 2.422377 GGTGGCCCGAACCAGTATAAAT 60.422 50.000 0.00 0.00 41.46 1.40
77 78 2.876550 GTGGCCCGAACCAGTATAAATC 59.123 50.000 0.00 0.00 41.46 2.17
78 79 2.775384 TGGCCCGAACCAGTATAAATCT 59.225 45.455 0.00 0.00 33.75 2.40
79 80 3.201266 TGGCCCGAACCAGTATAAATCTT 59.799 43.478 0.00 0.00 33.75 2.40
80 81 3.564225 GGCCCGAACCAGTATAAATCTTG 59.436 47.826 0.00 0.00 0.00 3.02
81 82 4.196971 GCCCGAACCAGTATAAATCTTGT 58.803 43.478 0.00 0.00 0.00 3.16
82 83 4.035208 GCCCGAACCAGTATAAATCTTGTG 59.965 45.833 0.00 0.00 0.00 3.33
83 84 5.183228 CCCGAACCAGTATAAATCTTGTGT 58.817 41.667 0.00 0.00 0.00 3.72
84 85 5.293569 CCCGAACCAGTATAAATCTTGTGTC 59.706 44.000 0.00 0.00 0.00 3.67
85 86 6.106673 CCGAACCAGTATAAATCTTGTGTCT 58.893 40.000 0.00 0.00 0.00 3.41
86 87 6.255887 CCGAACCAGTATAAATCTTGTGTCTC 59.744 42.308 0.00 0.00 0.00 3.36
87 88 6.020599 CGAACCAGTATAAATCTTGTGTCTCG 60.021 42.308 0.00 0.00 0.00 4.04
88 89 6.282199 ACCAGTATAAATCTTGTGTCTCGT 57.718 37.500 0.00 0.00 0.00 4.18
89 90 6.100004 ACCAGTATAAATCTTGTGTCTCGTG 58.900 40.000 0.00 0.00 0.00 4.35
90 91 6.100004 CCAGTATAAATCTTGTGTCTCGTGT 58.900 40.000 0.00 0.00 0.00 4.49
91 92 6.035005 CCAGTATAAATCTTGTGTCTCGTGTG 59.965 42.308 0.00 0.00 0.00 3.82
92 93 6.586463 CAGTATAAATCTTGTGTCTCGTGTGT 59.414 38.462 0.00 0.00 0.00 3.72
93 94 7.116376 CAGTATAAATCTTGTGTCTCGTGTGTT 59.884 37.037 0.00 0.00 0.00 3.32
94 95 4.536364 AAATCTTGTGTCTCGTGTGTTG 57.464 40.909 0.00 0.00 0.00 3.33
95 96 2.951457 TCTTGTGTCTCGTGTGTTGA 57.049 45.000 0.00 0.00 0.00 3.18
96 97 2.809446 TCTTGTGTCTCGTGTGTTGAG 58.191 47.619 0.00 0.00 34.72 3.02
97 98 2.425668 TCTTGTGTCTCGTGTGTTGAGA 59.574 45.455 0.00 0.00 40.07 3.27
98 99 2.492019 TGTGTCTCGTGTGTTGAGAG 57.508 50.000 0.00 0.00 42.81 3.20
99 100 1.749063 TGTGTCTCGTGTGTTGAGAGT 59.251 47.619 0.00 0.00 42.81 3.24
100 101 2.165641 TGTGTCTCGTGTGTTGAGAGTT 59.834 45.455 0.00 0.00 42.81 3.01
101 102 2.789893 GTGTCTCGTGTGTTGAGAGTTC 59.210 50.000 0.00 0.00 42.81 3.01
102 103 2.044860 GTCTCGTGTGTTGAGAGTTCG 58.955 52.381 0.00 0.00 42.81 3.95
103 104 1.674441 TCTCGTGTGTTGAGAGTTCGT 59.326 47.619 0.00 0.00 37.55 3.85
104 105 2.044860 CTCGTGTGTTGAGAGTTCGTC 58.955 52.381 0.00 0.00 35.43 4.20
105 106 0.770590 CGTGTGTTGAGAGTTCGTCG 59.229 55.000 0.00 0.00 0.00 5.12
106 107 1.836383 GTGTGTTGAGAGTTCGTCGT 58.164 50.000 0.00 0.00 0.00 4.34
107 108 1.517276 GTGTGTTGAGAGTTCGTCGTG 59.483 52.381 0.00 0.00 0.00 4.35
108 109 0.503117 GTGTTGAGAGTTCGTCGTGC 59.497 55.000 0.00 0.00 0.00 5.34
109 110 0.384309 TGTTGAGAGTTCGTCGTGCT 59.616 50.000 0.00 0.00 0.00 4.40
110 111 1.202371 TGTTGAGAGTTCGTCGTGCTT 60.202 47.619 0.00 0.00 0.00 3.91
111 112 2.033675 TGTTGAGAGTTCGTCGTGCTTA 59.966 45.455 0.00 0.00 0.00 3.09
112 113 2.613730 TGAGAGTTCGTCGTGCTTAG 57.386 50.000 0.00 0.00 0.00 2.18
113 114 1.261097 GAGAGTTCGTCGTGCTTAGC 58.739 55.000 0.00 0.00 0.00 3.09
114 115 0.109226 AGAGTTCGTCGTGCTTAGCC 60.109 55.000 0.29 0.00 0.00 3.93
115 116 0.109226 GAGTTCGTCGTGCTTAGCCT 60.109 55.000 0.29 0.00 0.00 4.58
116 117 1.131883 GAGTTCGTCGTGCTTAGCCTA 59.868 52.381 0.29 0.00 0.00 3.93
117 118 1.132643 AGTTCGTCGTGCTTAGCCTAG 59.867 52.381 0.29 0.00 0.00 3.02
118 119 1.131883 GTTCGTCGTGCTTAGCCTAGA 59.868 52.381 0.29 0.00 0.00 2.43
119 120 1.015109 TCGTCGTGCTTAGCCTAGAG 58.985 55.000 0.29 0.00 0.00 2.43
120 121 1.015109 CGTCGTGCTTAGCCTAGAGA 58.985 55.000 0.29 0.00 0.00 3.10
121 122 1.604755 CGTCGTGCTTAGCCTAGAGAT 59.395 52.381 0.29 0.00 0.00 2.75
122 123 2.350007 CGTCGTGCTTAGCCTAGAGATC 60.350 54.545 0.29 0.00 0.00 2.75
123 124 1.874231 TCGTGCTTAGCCTAGAGATCG 59.126 52.381 0.29 0.00 0.00 3.69
124 125 1.604755 CGTGCTTAGCCTAGAGATCGT 59.395 52.381 0.29 0.00 0.00 3.73
125 126 2.603412 CGTGCTTAGCCTAGAGATCGTG 60.603 54.545 0.29 0.00 0.00 4.35
126 127 2.619177 GTGCTTAGCCTAGAGATCGTGA 59.381 50.000 0.29 0.00 0.00 4.35
127 128 3.066900 GTGCTTAGCCTAGAGATCGTGAA 59.933 47.826 0.29 0.00 0.00 3.18
128 129 3.316588 TGCTTAGCCTAGAGATCGTGAAG 59.683 47.826 0.29 0.00 0.00 3.02
129 130 3.855524 GCTTAGCCTAGAGATCGTGAAGC 60.856 52.174 0.00 0.00 0.00 3.86
130 131 0.665835 AGCCTAGAGATCGTGAAGCG 59.334 55.000 0.00 0.00 43.01 4.68
131 132 0.382515 GCCTAGAGATCGTGAAGCGT 59.617 55.000 0.00 0.00 42.13 5.07
132 133 1.862008 GCCTAGAGATCGTGAAGCGTG 60.862 57.143 0.00 0.00 42.13 5.34
133 134 1.402259 CCTAGAGATCGTGAAGCGTGT 59.598 52.381 0.00 0.00 42.13 4.49
134 135 2.445316 CTAGAGATCGTGAAGCGTGTG 58.555 52.381 0.00 0.00 42.13 3.82
135 136 0.881796 AGAGATCGTGAAGCGTGTGA 59.118 50.000 0.00 0.00 42.13 3.58
136 137 1.135546 AGAGATCGTGAAGCGTGTGAG 60.136 52.381 0.00 0.00 42.13 3.51
137 138 0.734253 AGATCGTGAAGCGTGTGAGC 60.734 55.000 0.00 0.00 42.13 4.26
138 139 2.002963 GATCGTGAAGCGTGTGAGCG 62.003 60.000 0.00 0.00 43.00 5.03
146 147 3.890705 CGTGTGAGCGCGTGATCG 61.891 66.667 8.43 2.07 42.94 3.69
147 148 3.545481 GTGTGAGCGCGTGATCGG 61.545 66.667 8.43 0.00 37.56 4.18
148 149 4.050934 TGTGAGCGCGTGATCGGT 62.051 61.111 8.43 0.00 43.32 4.69
149 150 3.545481 GTGAGCGCGTGATCGGTG 61.545 66.667 8.43 0.00 40.51 4.94
150 151 3.743636 TGAGCGCGTGATCGGTGA 61.744 61.111 8.43 0.00 40.51 4.02
151 152 2.951745 GAGCGCGTGATCGGTGAG 60.952 66.667 8.43 0.00 40.51 3.51
152 153 4.498520 AGCGCGTGATCGGTGAGG 62.499 66.667 8.43 0.00 38.86 3.86
154 155 4.873129 CGCGTGATCGGTGAGGGG 62.873 72.222 0.00 0.00 37.56 4.79
155 156 4.530857 GCGTGATCGGTGAGGGGG 62.531 72.222 0.00 0.00 37.56 5.40
156 157 2.758327 CGTGATCGGTGAGGGGGA 60.758 66.667 0.00 0.00 0.00 4.81
157 158 2.786495 CGTGATCGGTGAGGGGGAG 61.786 68.421 0.00 0.00 0.00 4.30
158 159 1.381327 GTGATCGGTGAGGGGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
159 160 0.760945 GTGATCGGTGAGGGGGAGAT 60.761 60.000 0.00 0.00 0.00 2.75
160 161 0.470080 TGATCGGTGAGGGGGAGATC 60.470 60.000 0.00 0.00 38.44 2.75
161 162 0.178947 GATCGGTGAGGGGGAGATCT 60.179 60.000 0.00 0.00 35.94 2.75
162 163 0.266152 ATCGGTGAGGGGGAGATCTT 59.734 55.000 0.00 0.00 0.00 2.40
163 164 0.397254 TCGGTGAGGGGGAGATCTTC 60.397 60.000 0.00 0.00 0.00 2.87
164 165 1.739338 CGGTGAGGGGGAGATCTTCG 61.739 65.000 0.00 0.00 0.00 3.79
165 166 1.443828 GTGAGGGGGAGATCTTCGC 59.556 63.158 9.62 9.62 37.99 4.70
166 167 2.127869 TGAGGGGGAGATCTTCGCG 61.128 63.158 11.70 0.00 39.53 5.87
168 169 4.951963 GGGGGAGATCTTCGCGCG 62.952 72.222 26.76 26.76 40.84 6.86
170 171 4.873129 GGGAGATCTTCGCGCGCA 62.873 66.667 32.61 15.11 0.00 6.09
171 172 3.621394 GGAGATCTTCGCGCGCAC 61.621 66.667 32.61 13.65 0.00 5.34
172 173 3.621394 GAGATCTTCGCGCGCACC 61.621 66.667 32.61 11.97 0.00 5.01
183 184 4.980805 GCGCACCCCAGTGTTCGA 62.981 66.667 0.30 0.00 46.35 3.71
184 185 2.280524 CGCACCCCAGTGTTCGAA 60.281 61.111 0.00 0.00 46.35 3.71
185 186 2.604174 CGCACCCCAGTGTTCGAAC 61.604 63.158 21.42 21.42 46.35 3.95
186 187 2.258726 GCACCCCAGTGTTCGAACC 61.259 63.158 24.78 15.84 46.35 3.62
187 188 1.450211 CACCCCAGTGTTCGAACCT 59.550 57.895 24.78 17.73 39.30 3.50
188 189 0.179029 CACCCCAGTGTTCGAACCTT 60.179 55.000 24.78 10.58 39.30 3.50
189 190 1.071071 CACCCCAGTGTTCGAACCTTA 59.929 52.381 24.78 4.16 39.30 2.69
190 191 1.770061 ACCCCAGTGTTCGAACCTTAA 59.230 47.619 24.78 3.77 0.00 1.85
191 192 2.224450 ACCCCAGTGTTCGAACCTTAAG 60.224 50.000 24.78 11.88 0.00 1.85
192 193 2.423577 CCCAGTGTTCGAACCTTAAGG 58.576 52.381 24.78 20.42 42.17 2.69
193 194 2.423577 CCAGTGTTCGAACCTTAAGGG 58.576 52.381 25.31 13.92 40.27 3.95
204 205 2.302587 CCTTAAGGGTTTTGCCAGGA 57.697 50.000 14.25 0.00 39.65 3.86
205 206 1.893137 CCTTAAGGGTTTTGCCAGGAC 59.107 52.381 14.25 0.00 39.65 3.85
206 207 1.893137 CTTAAGGGTTTTGCCAGGACC 59.107 52.381 0.00 0.00 39.65 4.46
208 209 2.989253 GGGTTTTGCCAGGACCCG 60.989 66.667 0.00 0.00 43.25 5.28
209 210 2.114411 GGTTTTGCCAGGACCCGA 59.886 61.111 0.00 0.00 37.17 5.14
210 211 1.529713 GGTTTTGCCAGGACCCGAA 60.530 57.895 0.00 0.00 37.17 4.30
211 212 1.110518 GGTTTTGCCAGGACCCGAAA 61.111 55.000 0.00 0.00 37.17 3.46
212 213 0.966179 GTTTTGCCAGGACCCGAAAT 59.034 50.000 0.00 0.00 0.00 2.17
213 214 1.067846 GTTTTGCCAGGACCCGAAATC 60.068 52.381 0.00 0.00 0.00 2.17
214 215 0.610785 TTTGCCAGGACCCGAAATCC 60.611 55.000 0.00 0.00 36.38 3.01
215 216 2.513897 GCCAGGACCCGAAATCCG 60.514 66.667 0.00 0.00 41.52 4.18
216 217 3.026431 GCCAGGACCCGAAATCCGA 62.026 63.158 0.00 0.00 41.52 4.55
217 218 1.153429 CCAGGACCCGAAATCCGAC 60.153 63.158 0.00 0.00 41.52 4.79
218 219 1.594833 CAGGACCCGAAATCCGACA 59.405 57.895 0.00 0.00 41.52 4.35
255 257 1.066908 CCATGGCGGCGATAACAAATT 59.933 47.619 12.98 0.00 0.00 1.82
261 263 1.395608 CGGCGATAACAAATTGTCCGT 59.604 47.619 13.03 0.00 0.00 4.69
293 295 4.162320 ACCATGATGAAGTAGTTCGGACAT 59.838 41.667 5.84 7.96 35.17 3.06
421 652 9.656323 TCACTATGGGTAGTATATTTGAAGTCT 57.344 33.333 0.00 0.00 39.12 3.24
437 668 2.205342 AGTCTAAGGGCCCTTTATGCA 58.795 47.619 41.23 22.48 37.47 3.96
461 692 7.095313 GCATCACATAAGAAGACCATAGATGTG 60.095 40.741 5.88 5.88 42.48 3.21
485 716 4.709250 ACTGTCTTTCTTTCAAGGTCCTC 58.291 43.478 0.00 0.00 0.00 3.71
497 728 7.977853 TCTTTCAAGGTCCTCGTTGTAATATAC 59.022 37.037 0.00 0.00 39.51 1.47
498 729 7.414222 TTCAAGGTCCTCGTTGTAATATACT 57.586 36.000 0.00 0.00 39.51 2.12
499 730 8.523915 TTCAAGGTCCTCGTTGTAATATACTA 57.476 34.615 0.00 0.00 39.51 1.82
505 736 8.457261 GGTCCTCGTTGTAATATACTAGTATGG 58.543 40.741 23.09 12.47 0.00 2.74
815 2555 1.520666 GTAAGGAAGCCCTAGCGCA 59.479 57.895 11.47 0.00 43.48 6.09
838 2578 2.373502 CTCTTCTGGGGTTTCTGTTCCT 59.626 50.000 0.00 0.00 0.00 3.36
964 2720 4.103365 TCTTCGAGATCTCAGCTTGTTC 57.897 45.455 22.31 0.00 0.00 3.18
1114 2872 1.750193 TGATTGGATTGAACCGAGCC 58.250 50.000 0.00 0.00 0.00 4.70
1120 2878 3.963129 TGGATTGAACCGAGCCTTTTAT 58.037 40.909 0.00 0.00 0.00 1.40
1123 2881 5.245075 TGGATTGAACCGAGCCTTTTATTTT 59.755 36.000 0.00 0.00 0.00 1.82
1124 2882 5.805486 GGATTGAACCGAGCCTTTTATTTTC 59.195 40.000 0.00 0.00 0.00 2.29
1125 2883 5.776173 TTGAACCGAGCCTTTTATTTTCA 57.224 34.783 0.00 0.00 0.00 2.69
1126 2884 5.975693 TGAACCGAGCCTTTTATTTTCAT 57.024 34.783 0.00 0.00 0.00 2.57
1127 2885 5.949735 TGAACCGAGCCTTTTATTTTCATC 58.050 37.500 0.00 0.00 0.00 2.92
1128 2886 4.983671 ACCGAGCCTTTTATTTTCATCC 57.016 40.909 0.00 0.00 0.00 3.51
1193 2951 8.489489 TGAAATAAATCAGCTGAGATTCTACCT 58.511 33.333 22.96 6.17 37.24 3.08
1196 2958 3.533606 TCAGCTGAGATTCTACCTTGC 57.466 47.619 13.74 0.00 0.00 4.01
1323 3085 3.950794 TTGGGTTAGCTCTGCGGCG 62.951 63.158 0.51 0.51 37.29 6.46
1341 3103 1.858091 CGGAGCAAGCGAATCAGTAT 58.142 50.000 0.00 0.00 0.00 2.12
1380 3142 5.932303 TGTTCTAAGAATTCTTCTGTTCCCG 59.068 40.000 23.70 4.63 40.59 5.14
1493 3262 4.810345 ACCACATTTGTTTAAGAAGGGGA 58.190 39.130 0.00 0.00 0.00 4.81
1592 3361 8.799367 GTTAACCTTATGTTCCCACACTTTTAT 58.201 33.333 0.00 0.00 38.42 1.40
1663 3433 7.093727 TGGGCTGAGCTTACTTATATCTACATC 60.094 40.741 3.72 0.00 0.00 3.06
1802 3573 4.873129 CTCGGACACGCGGGGATG 62.873 72.222 15.46 2.37 40.69 3.51
1895 3764 1.045407 TGGGGGACTCGATTAATCCG 58.955 55.000 9.87 5.56 32.90 4.18
1929 3798 1.677966 CCCTCGTCCGACTTCAGGA 60.678 63.158 8.84 0.00 34.99 3.86
2000 3869 4.688419 CCGCTGCCGTTGTTGCTG 62.688 66.667 0.00 0.00 0.00 4.41
2002 3871 3.969802 GCTGCCGTTGTTGCTGCT 61.970 61.111 0.00 0.00 46.35 4.24
2003 3872 2.050714 CTGCCGTTGTTGCTGCTG 60.051 61.111 0.00 0.00 0.00 4.41
2004 3873 4.268939 TGCCGTTGTTGCTGCTGC 62.269 61.111 8.89 8.89 40.20 5.25
2043 3912 4.746309 TGCTGCTGCATCCCCCAC 62.746 66.667 14.93 0.00 45.31 4.61
2047 3916 4.746309 GCTGCATCCCCCACTGCA 62.746 66.667 0.00 0.00 45.60 4.41
2081 4046 4.688419 CCGCCGTTGTTGCTGCTG 62.688 66.667 0.00 0.00 0.00 4.41
2111 4076 4.400109 CTGCCGTTGCTGCTGCTG 62.400 66.667 17.00 0.77 40.48 4.41
2121 4086 4.746309 TGCTGCTGCATCCCCCAC 62.746 66.667 14.93 0.00 45.31 4.61
2122 4087 4.437587 GCTGCTGCATCCCCCACT 62.438 66.667 11.11 0.00 39.41 4.00
2123 4088 2.439701 CTGCTGCATCCCCCACTG 60.440 66.667 1.31 0.00 0.00 3.66
2124 4089 4.746309 TGCTGCATCCCCCACTGC 62.746 66.667 0.00 0.00 38.87 4.40
2125 4090 4.746309 GCTGCATCCCCCACTGCA 62.746 66.667 0.00 0.00 45.60 4.41
2127 4092 4.746309 TGCATCCCCCACTGCAGC 62.746 66.667 15.27 0.00 43.11 5.25
2307 4304 1.172812 AGGGCTTGAGTTTTGACGGC 61.173 55.000 0.00 0.00 0.00 5.68
2320 4317 0.744281 TGACGGCGCAGATTGATCTA 59.256 50.000 16.26 0.00 34.85 1.98
2334 4331 5.784390 AGATTGATCTATAGCATCCAGTGGT 59.216 40.000 9.54 0.00 37.59 4.16
2373 4370 1.450848 GGCCGGCCCAACTACTAAC 60.451 63.158 36.64 4.38 0.00 2.34
2403 4400 4.889409 TCTTCTTTGTGGCTCTTGACAATT 59.111 37.500 0.00 0.00 32.27 2.32
2406 4403 1.619654 TGTGGCTCTTGACAATTGGG 58.380 50.000 10.83 0.00 29.94 4.12
2416 4413 3.824001 TGACAATTGGGGAGGAAATGA 57.176 42.857 10.83 0.00 0.00 2.57
2503 4500 1.637553 ACTGCTGAATGGGGTGATCTT 59.362 47.619 0.00 0.00 0.00 2.40
2514 4511 5.174037 TGGGGTGATCTTTTTCTCGTTAT 57.826 39.130 0.00 0.00 0.00 1.89
2614 4612 2.516227 TTGGAAAATGCCGTATCCCA 57.484 45.000 0.00 0.00 0.00 4.37
2633 4631 0.901827 ATGTCCCTGTATGCGTGTCA 59.098 50.000 0.00 0.00 0.00 3.58
2636 4634 1.188871 TCCCTGTATGCGTGTCACCA 61.189 55.000 0.00 0.00 0.00 4.17
2641 4639 1.006832 GTATGCGTGTCACCATGTCC 58.993 55.000 13.93 2.91 0.00 4.02
2642 4640 0.610687 TATGCGTGTCACCATGTCCA 59.389 50.000 13.93 0.00 0.00 4.02
2651 4649 2.125147 CCATGTCCATGTCGCCGT 60.125 61.111 6.53 0.00 37.11 5.68
2652 4650 1.142965 CCATGTCCATGTCGCCGTA 59.857 57.895 6.53 0.00 37.11 4.02
2653 4651 0.249868 CCATGTCCATGTCGCCGTAT 60.250 55.000 6.53 0.00 37.11 3.06
2654 4652 1.139989 CATGTCCATGTCGCCGTATC 58.860 55.000 0.00 0.00 34.23 2.24
2655 4653 0.033504 ATGTCCATGTCGCCGTATCC 59.966 55.000 0.00 0.00 0.00 2.59
2656 4654 1.324005 TGTCCATGTCGCCGTATCCA 61.324 55.000 0.00 0.00 0.00 3.41
2657 4655 0.033504 GTCCATGTCGCCGTATCCAT 59.966 55.000 0.00 0.00 0.00 3.41
2658 4656 0.033366 TCCATGTCGCCGTATCCATG 59.967 55.000 0.00 0.00 35.56 3.66
2659 4657 1.568612 CCATGTCGCCGTATCCATGC 61.569 60.000 0.00 0.00 34.69 4.06
2660 4658 0.601046 CATGTCGCCGTATCCATGCT 60.601 55.000 0.00 0.00 0.00 3.79
2661 4659 0.106708 ATGTCGCCGTATCCATGCTT 59.893 50.000 0.00 0.00 0.00 3.91
2662 4660 0.747852 TGTCGCCGTATCCATGCTTA 59.252 50.000 0.00 0.00 0.00 3.09
2663 4661 1.137513 GTCGCCGTATCCATGCTTAC 58.862 55.000 0.00 0.00 0.00 2.34
2664 4662 1.037493 TCGCCGTATCCATGCTTACT 58.963 50.000 0.00 0.00 0.00 2.24
2665 4663 2.030540 GTCGCCGTATCCATGCTTACTA 60.031 50.000 0.00 0.00 0.00 1.82
2666 4664 2.228103 TCGCCGTATCCATGCTTACTAG 59.772 50.000 0.00 0.00 0.00 2.57
2667 4665 2.030185 CGCCGTATCCATGCTTACTAGT 60.030 50.000 0.00 0.00 0.00 2.57
2668 4666 3.318017 GCCGTATCCATGCTTACTAGTG 58.682 50.000 5.39 0.00 0.00 2.74
2669 4667 3.243771 GCCGTATCCATGCTTACTAGTGT 60.244 47.826 5.39 0.00 0.00 3.55
2670 4668 4.022589 GCCGTATCCATGCTTACTAGTGTA 60.023 45.833 5.39 0.00 0.00 2.90
2671 4669 5.336531 GCCGTATCCATGCTTACTAGTGTAT 60.337 44.000 5.39 0.00 0.00 2.29
2693 4691 2.833794 TGACTAACACCTCACAACAGC 58.166 47.619 0.00 0.00 0.00 4.40
2758 4756 1.937223 CGGTTGCTGAACTGTGTTGTA 59.063 47.619 0.00 0.00 34.21 2.41
2963 4963 5.420725 TTGCTTTCTTCTCCTACAGCATA 57.579 39.130 0.00 0.00 37.13 3.14
2984 4984 4.789012 ATGTTATTGTTGCTGGGTTCTG 57.211 40.909 0.00 0.00 0.00 3.02
2993 4993 3.281727 TGCTGGGTTCTGACATTATCC 57.718 47.619 0.00 0.00 0.00 2.59
3084 5084 3.321039 TGAGCTAGGTGGATTGGATGAT 58.679 45.455 0.00 0.00 0.00 2.45
3085 5085 3.072038 TGAGCTAGGTGGATTGGATGATG 59.928 47.826 0.00 0.00 0.00 3.07
3086 5086 3.321039 AGCTAGGTGGATTGGATGATGA 58.679 45.455 0.00 0.00 0.00 2.92
3087 5087 3.915073 AGCTAGGTGGATTGGATGATGAT 59.085 43.478 0.00 0.00 0.00 2.45
3088 5088 4.008330 GCTAGGTGGATTGGATGATGATG 58.992 47.826 0.00 0.00 0.00 3.07
3089 5089 4.263199 GCTAGGTGGATTGGATGATGATGA 60.263 45.833 0.00 0.00 0.00 2.92
3090 5090 5.573090 GCTAGGTGGATTGGATGATGATGAT 60.573 44.000 0.00 0.00 0.00 2.45
3091 5091 4.663334 AGGTGGATTGGATGATGATGATG 58.337 43.478 0.00 0.00 0.00 3.07
3092 5092 3.192844 GGTGGATTGGATGATGATGATGC 59.807 47.826 0.00 0.00 0.00 3.91
3095 5095 3.444034 GGATTGGATGATGATGATGCTGG 59.556 47.826 0.00 0.00 0.00 4.85
3132 5141 1.141053 GGGCCTGGTGACGAAGAATAT 59.859 52.381 0.84 0.00 0.00 1.28
3203 5213 7.503566 AGATTTGGAATCTCTTCTGTTTTGACA 59.496 33.333 0.00 0.00 0.00 3.58
3215 5225 5.380900 TCTGTTTTGACATGACCACCATTA 58.619 37.500 0.00 0.00 31.94 1.90
3233 5243 1.580059 TATCCGCCTTCTGGTCCTTT 58.420 50.000 0.00 0.00 35.27 3.11
3235 5245 1.125093 TCCGCCTTCTGGTCCTTTCA 61.125 55.000 0.00 0.00 35.27 2.69
3236 5246 0.250727 CCGCCTTCTGGTCCTTTCAA 60.251 55.000 0.00 0.00 35.27 2.69
3359 5394 1.568504 AGGATCGCAAACTCCCTGTA 58.431 50.000 0.00 0.00 31.49 2.74
3561 5681 9.297037 ACATTGTTATGTAAACTAGGAAAGCTT 57.703 29.630 0.00 0.00 43.12 3.74
3629 5749 5.063564 CGAAAGCCTGGTAAAGAATGTAGTC 59.936 44.000 0.00 0.00 0.00 2.59
3637 5757 8.665685 CCTGGTAAAGAATGTAGTCAATTGTAC 58.334 37.037 5.13 2.40 0.00 2.90
3822 6019 0.556747 ACTATGCGGGAGGTAGTCCT 59.443 55.000 0.00 0.00 46.06 3.85
3823 6020 1.779092 ACTATGCGGGAGGTAGTCCTA 59.221 52.381 0.00 0.00 46.06 2.94
3824 6021 2.176364 ACTATGCGGGAGGTAGTCCTAA 59.824 50.000 0.00 0.00 46.06 2.69
3825 6022 1.411041 ATGCGGGAGGTAGTCCTAAC 58.589 55.000 0.00 0.00 46.06 2.34
3826 6023 0.333993 TGCGGGAGGTAGTCCTAACT 59.666 55.000 0.00 0.00 46.06 2.24
3827 6024 1.565759 TGCGGGAGGTAGTCCTAACTA 59.434 52.381 0.00 0.00 46.06 2.24
3828 6025 2.176364 TGCGGGAGGTAGTCCTAACTAT 59.824 50.000 0.00 0.00 46.06 2.12
3829 6026 3.395607 TGCGGGAGGTAGTCCTAACTATA 59.604 47.826 0.00 0.00 46.06 1.31
3830 6027 3.755905 GCGGGAGGTAGTCCTAACTATAC 59.244 52.174 0.00 0.00 46.06 1.47
3831 6028 4.747931 GCGGGAGGTAGTCCTAACTATACA 60.748 50.000 0.00 0.00 46.06 2.29
3832 6029 4.759183 CGGGAGGTAGTCCTAACTATACAC 59.241 50.000 0.00 0.00 46.06 2.90
3833 6030 5.688500 CGGGAGGTAGTCCTAACTATACACA 60.689 48.000 0.00 0.00 46.06 3.72
3834 6031 6.131961 GGGAGGTAGTCCTAACTATACACAA 58.868 44.000 0.00 0.00 46.06 3.33
3835 6032 6.264970 GGGAGGTAGTCCTAACTATACACAAG 59.735 46.154 0.00 0.00 46.06 3.16
3836 6033 6.238981 GGAGGTAGTCCTAACTATACACAAGC 60.239 46.154 0.00 0.00 45.24 4.01
3837 6034 5.298777 AGGTAGTCCTAACTATACACAAGCG 59.701 44.000 0.00 0.00 43.12 4.68
3838 6035 5.067023 GGTAGTCCTAACTATACACAAGCGT 59.933 44.000 0.00 0.00 40.08 5.07
3839 6036 6.260936 GGTAGTCCTAACTATACACAAGCGTA 59.739 42.308 0.00 0.00 40.08 4.42
3840 6037 6.956202 AGTCCTAACTATACACAAGCGTAT 57.044 37.500 0.00 0.00 36.13 3.06
3971 6168 2.892852 CACAGTTGGATCCCAAACATGT 59.107 45.455 9.90 10.74 45.73 3.21
4139 6374 3.144657 ACTGGTGTTGATGATCTTGCA 57.855 42.857 0.00 0.00 0.00 4.08
4238 6473 9.973661 ATACTAATATAGTCACATGAGCTCTCT 57.026 33.333 16.19 0.00 40.14 3.10
4296 6531 4.799564 TGGTTGCCCTATTTCATTTGTC 57.200 40.909 0.00 0.00 0.00 3.18
4690 6937 9.677567 TTTGAATGCAAATCTTGAGTTAACTAC 57.322 29.630 8.42 3.26 38.99 2.73
4691 6938 7.816640 TGAATGCAAATCTTGAGTTAACTACC 58.183 34.615 8.42 0.00 0.00 3.18
5013 7260 1.529309 GGACCAAGGCCATCTCCTC 59.471 63.158 5.01 0.00 34.82 3.71
5576 7823 3.423539 AAATCAGCAGGAGCACAACTA 57.576 42.857 0.00 0.00 45.49 2.24
6347 8594 2.889170 AGTCTCTACTGGACAGAGCA 57.111 50.000 6.29 0.00 39.55 4.26
6383 8630 1.028330 ATCAACATGTGGCCTCTGCG 61.028 55.000 3.32 0.00 38.85 5.18
6422 8669 3.137446 ACTCTATGGCAGGCATCATTC 57.863 47.619 13.81 0.00 0.00 2.67
6766 9014 9.341078 TGATAATGTTTTATCATAGCTGCTTCA 57.659 29.630 7.79 0.00 45.53 3.02
6838 9086 6.770286 ACCCTATGTTCTATCCAATGTGAT 57.230 37.500 0.00 0.00 0.00 3.06
6910 9158 6.832520 TTGCTATCACTTCCATTTTTGCTA 57.167 33.333 0.00 0.00 0.00 3.49
7030 9279 5.010922 TGCAGCTTTTCTCAACAATACCAAT 59.989 36.000 0.00 0.00 0.00 3.16
7050 9405 7.060421 ACCAATAAAGAAAGAACAGTTCTCCA 58.940 34.615 16.44 0.00 39.61 3.86
7174 9529 8.386606 GTTGAGCAAGAACATAATCTTCAGTAG 58.613 37.037 0.00 0.00 37.56 2.57
7197 9552 9.516314 GTAGCTGAATTTTTGGTGATATTTACC 57.484 33.333 0.00 3.74 38.71 2.85
7281 9636 8.763984 ATGGAATTGCTTGATCTTTCTTCTAT 57.236 30.769 0.00 0.00 0.00 1.98
7286 9641 8.975663 ATTGCTTGATCTTTCTTCTATCATCA 57.024 30.769 0.00 0.00 30.17 3.07
7614 9985 1.068127 GGGAACATGATGGCTGAATGC 59.932 52.381 0.00 0.00 41.94 3.56
7651 10022 2.364002 TGTCAGCCAAAACTTTTAGGGC 59.636 45.455 7.29 7.29 39.60 5.19
7667 10038 0.319813 GGGCGCTTTCTGTTGCATTT 60.320 50.000 7.64 0.00 0.00 2.32
7668 10039 1.063031 GGCGCTTTCTGTTGCATTTC 58.937 50.000 7.64 0.00 0.00 2.17
7669 10040 1.336240 GGCGCTTTCTGTTGCATTTCT 60.336 47.619 7.64 0.00 0.00 2.52
7670 10041 1.717645 GCGCTTTCTGTTGCATTTCTG 59.282 47.619 0.00 0.00 0.00 3.02
7671 10042 2.859806 GCGCTTTCTGTTGCATTTCTGT 60.860 45.455 0.00 0.00 0.00 3.41
7672 10043 3.374745 CGCTTTCTGTTGCATTTCTGTT 58.625 40.909 0.00 0.00 0.00 3.16
7673 10044 3.180980 CGCTTTCTGTTGCATTTCTGTTG 59.819 43.478 0.00 0.00 0.00 3.33
7674 10045 3.060070 GCTTTCTGTTGCATTTCTGTTGC 60.060 43.478 0.00 0.00 40.55 4.17
7681 10052 3.965379 TGCATTTCTGTTGCATTCCAT 57.035 38.095 0.00 0.00 44.73 3.41
7682 10053 4.274602 TGCATTTCTGTTGCATTCCATT 57.725 36.364 0.00 0.00 44.73 3.16
7683 10054 3.997681 TGCATTTCTGTTGCATTCCATTG 59.002 39.130 0.00 0.00 44.73 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.967380 GTGGTGGATTGCCTCTTGGG 60.967 60.000 0.00 0.00 38.36 4.12
4 5 0.967380 GGTGGTGGATTGCCTCTTGG 60.967 60.000 0.00 0.00 34.31 3.61
8 9 1.678970 GGTGGTGGTGGATTGCCTC 60.679 63.158 0.00 0.00 34.31 4.70
10 11 2.117206 TGGTGGTGGTGGATTGCC 59.883 61.111 0.00 0.00 0.00 4.52
11 12 1.530419 TGTGGTGGTGGTGGATTGC 60.530 57.895 0.00 0.00 0.00 3.56
12 13 0.178992 AGTGTGGTGGTGGTGGATTG 60.179 55.000 0.00 0.00 0.00 2.67
13 14 0.178992 CAGTGTGGTGGTGGTGGATT 60.179 55.000 0.00 0.00 0.00 3.01
14 15 1.455849 CAGTGTGGTGGTGGTGGAT 59.544 57.895 0.00 0.00 0.00 3.41
15 16 2.751731 CCAGTGTGGTGGTGGTGGA 61.752 63.158 0.00 0.00 31.35 4.02
16 17 2.203337 CCAGTGTGGTGGTGGTGG 60.203 66.667 0.00 0.00 31.35 4.61
17 18 1.227943 CTCCAGTGTGGTGGTGGTG 60.228 63.158 0.00 0.00 39.03 4.17
18 19 0.399376 TACTCCAGTGTGGTGGTGGT 60.399 55.000 0.47 0.00 39.03 4.16
19 20 0.321671 CTACTCCAGTGTGGTGGTGG 59.678 60.000 0.47 0.00 39.03 4.61
20 21 0.321671 CCTACTCCAGTGTGGTGGTG 59.678 60.000 0.47 0.00 39.03 4.17
21 22 0.836400 CCCTACTCCAGTGTGGTGGT 60.836 60.000 0.47 1.04 39.03 4.16
22 23 0.836400 ACCCTACTCCAGTGTGGTGG 60.836 60.000 2.18 0.00 39.03 4.61
23 24 1.933021 TACCCTACTCCAGTGTGGTG 58.067 55.000 10.66 0.00 39.03 4.17
24 25 2.942604 ATACCCTACTCCAGTGTGGT 57.057 50.000 7.06 7.06 39.03 4.16
25 26 4.028131 TGTAATACCCTACTCCAGTGTGG 58.972 47.826 0.00 0.00 39.43 4.17
26 27 4.142004 GGTGTAATACCCTACTCCAGTGTG 60.142 50.000 0.00 0.00 44.15 3.82
27 28 4.028825 GGTGTAATACCCTACTCCAGTGT 58.971 47.826 0.00 0.00 44.15 3.55
28 29 4.667519 GGTGTAATACCCTACTCCAGTG 57.332 50.000 0.00 0.00 44.15 3.66
55 56 0.542805 TTATACTGGTTCGGGCCACC 59.457 55.000 4.39 4.00 34.36 4.61
56 57 2.406596 TTTATACTGGTTCGGGCCAC 57.593 50.000 4.39 0.00 34.36 5.01
57 58 2.775384 AGATTTATACTGGTTCGGGCCA 59.225 45.455 4.39 0.00 36.97 5.36
58 59 3.487120 AGATTTATACTGGTTCGGGCC 57.513 47.619 0.00 0.00 0.00 5.80
59 60 4.035208 CACAAGATTTATACTGGTTCGGGC 59.965 45.833 0.00 0.00 0.00 6.13
60 61 5.183228 ACACAAGATTTATACTGGTTCGGG 58.817 41.667 0.00 0.00 0.00 5.14
61 62 6.106673 AGACACAAGATTTATACTGGTTCGG 58.893 40.000 0.00 0.00 0.00 4.30
62 63 6.020599 CGAGACACAAGATTTATACTGGTTCG 60.021 42.308 0.00 0.00 0.00 3.95
63 64 6.812160 ACGAGACACAAGATTTATACTGGTTC 59.188 38.462 0.00 0.00 0.00 3.62
64 65 6.590292 CACGAGACACAAGATTTATACTGGTT 59.410 38.462 0.00 0.00 0.00 3.67
65 66 6.100004 CACGAGACACAAGATTTATACTGGT 58.900 40.000 0.00 0.00 0.00 4.00
66 67 6.035005 CACACGAGACACAAGATTTATACTGG 59.965 42.308 0.00 0.00 0.00 4.00
67 68 6.586463 ACACACGAGACACAAGATTTATACTG 59.414 38.462 0.00 0.00 0.00 2.74
68 69 6.688578 ACACACGAGACACAAGATTTATACT 58.311 36.000 0.00 0.00 0.00 2.12
69 70 6.946229 ACACACGAGACACAAGATTTATAC 57.054 37.500 0.00 0.00 0.00 1.47
70 71 7.149307 TCAACACACGAGACACAAGATTTATA 58.851 34.615 0.00 0.00 0.00 0.98
71 72 5.989168 TCAACACACGAGACACAAGATTTAT 59.011 36.000 0.00 0.00 0.00 1.40
72 73 5.353111 TCAACACACGAGACACAAGATTTA 58.647 37.500 0.00 0.00 0.00 1.40
73 74 4.188462 TCAACACACGAGACACAAGATTT 58.812 39.130 0.00 0.00 0.00 2.17
74 75 3.792401 TCAACACACGAGACACAAGATT 58.208 40.909 0.00 0.00 0.00 2.40
75 76 3.068165 TCTCAACACACGAGACACAAGAT 59.932 43.478 0.00 0.00 34.59 2.40
76 77 2.425668 TCTCAACACACGAGACACAAGA 59.574 45.455 0.00 0.00 34.59 3.02
77 78 2.791560 CTCTCAACACACGAGACACAAG 59.208 50.000 0.00 0.00 34.59 3.16
78 79 2.165641 ACTCTCAACACACGAGACACAA 59.834 45.455 0.00 0.00 34.59 3.33
79 80 1.749063 ACTCTCAACACACGAGACACA 59.251 47.619 0.00 0.00 34.59 3.72
80 81 2.493713 ACTCTCAACACACGAGACAC 57.506 50.000 0.00 0.00 34.59 3.67
81 82 2.540973 CGAACTCTCAACACACGAGACA 60.541 50.000 0.00 0.00 34.59 3.41
82 83 2.044860 CGAACTCTCAACACACGAGAC 58.955 52.381 0.00 0.00 34.59 3.36
83 84 1.674441 ACGAACTCTCAACACACGAGA 59.326 47.619 0.00 0.00 37.18 4.04
84 85 2.044860 GACGAACTCTCAACACACGAG 58.955 52.381 0.00 0.00 0.00 4.18
85 86 1.596220 CGACGAACTCTCAACACACGA 60.596 52.381 0.00 0.00 0.00 4.35
86 87 0.770590 CGACGAACTCTCAACACACG 59.229 55.000 0.00 0.00 0.00 4.49
87 88 1.517276 CACGACGAACTCTCAACACAC 59.483 52.381 0.00 0.00 0.00 3.82
88 89 1.835121 CACGACGAACTCTCAACACA 58.165 50.000 0.00 0.00 0.00 3.72
89 90 0.503117 GCACGACGAACTCTCAACAC 59.497 55.000 0.00 0.00 0.00 3.32
90 91 0.384309 AGCACGACGAACTCTCAACA 59.616 50.000 0.00 0.00 0.00 3.33
91 92 1.488527 AAGCACGACGAACTCTCAAC 58.511 50.000 0.00 0.00 0.00 3.18
92 93 2.921069 GCTAAGCACGACGAACTCTCAA 60.921 50.000 0.00 0.00 0.00 3.02
93 94 1.401148 GCTAAGCACGACGAACTCTCA 60.401 52.381 0.00 0.00 0.00 3.27
94 95 1.261097 GCTAAGCACGACGAACTCTC 58.739 55.000 0.00 0.00 0.00 3.20
95 96 0.109226 GGCTAAGCACGACGAACTCT 60.109 55.000 0.00 0.00 0.00 3.24
96 97 0.109226 AGGCTAAGCACGACGAACTC 60.109 55.000 0.00 0.00 0.00 3.01
97 98 1.132643 CTAGGCTAAGCACGACGAACT 59.867 52.381 0.00 0.00 0.00 3.01
98 99 1.131883 TCTAGGCTAAGCACGACGAAC 59.868 52.381 0.00 0.00 0.00 3.95
99 100 1.400846 CTCTAGGCTAAGCACGACGAA 59.599 52.381 0.00 0.00 0.00 3.85
100 101 1.015109 CTCTAGGCTAAGCACGACGA 58.985 55.000 0.00 0.00 0.00 4.20
101 102 1.015109 TCTCTAGGCTAAGCACGACG 58.985 55.000 0.00 0.00 0.00 5.12
102 103 2.350007 CGATCTCTAGGCTAAGCACGAC 60.350 54.545 0.00 0.00 0.00 4.34
103 104 1.874231 CGATCTCTAGGCTAAGCACGA 59.126 52.381 0.00 0.00 0.00 4.35
104 105 1.604755 ACGATCTCTAGGCTAAGCACG 59.395 52.381 0.00 7.83 0.00 5.34
105 106 2.619177 TCACGATCTCTAGGCTAAGCAC 59.381 50.000 0.00 0.00 0.00 4.40
106 107 2.932261 TCACGATCTCTAGGCTAAGCA 58.068 47.619 0.00 0.00 0.00 3.91
107 108 3.855524 GCTTCACGATCTCTAGGCTAAGC 60.856 52.174 0.00 0.00 0.00 3.09
108 109 3.896122 GCTTCACGATCTCTAGGCTAAG 58.104 50.000 0.00 0.00 0.00 2.18
109 110 3.992260 GCTTCACGATCTCTAGGCTAA 57.008 47.619 0.00 0.00 0.00 3.09
129 130 3.890705 CGATCACGCGCTCACACG 61.891 66.667 5.73 0.82 0.00 4.49
130 131 3.545481 CCGATCACGCGCTCACAC 61.545 66.667 5.73 0.00 38.29 3.82
131 132 4.050934 ACCGATCACGCGCTCACA 62.051 61.111 5.73 0.00 38.29 3.58
132 133 3.545481 CACCGATCACGCGCTCAC 61.545 66.667 5.73 0.00 38.29 3.51
133 134 3.683587 CTCACCGATCACGCGCTCA 62.684 63.158 5.73 0.00 38.29 4.26
134 135 2.951745 CTCACCGATCACGCGCTC 60.952 66.667 5.73 0.00 38.29 5.03
135 136 4.498520 CCTCACCGATCACGCGCT 62.499 66.667 5.73 0.00 38.29 5.92
137 138 4.873129 CCCCTCACCGATCACGCG 62.873 72.222 3.53 3.53 38.29 6.01
138 139 4.530857 CCCCCTCACCGATCACGC 62.531 72.222 0.00 0.00 38.29 5.34
139 140 2.758327 TCCCCCTCACCGATCACG 60.758 66.667 0.00 0.00 39.43 4.35
140 141 0.760945 ATCTCCCCCTCACCGATCAC 60.761 60.000 0.00 0.00 0.00 3.06
141 142 0.470080 GATCTCCCCCTCACCGATCA 60.470 60.000 0.00 0.00 32.75 2.92
142 143 0.178947 AGATCTCCCCCTCACCGATC 60.179 60.000 0.00 0.00 0.00 3.69
143 144 0.266152 AAGATCTCCCCCTCACCGAT 59.734 55.000 0.00 0.00 0.00 4.18
144 145 0.397254 GAAGATCTCCCCCTCACCGA 60.397 60.000 0.00 0.00 0.00 4.69
145 146 1.739338 CGAAGATCTCCCCCTCACCG 61.739 65.000 0.00 0.00 0.00 4.94
146 147 2.034048 GCGAAGATCTCCCCCTCACC 62.034 65.000 0.00 0.00 0.00 4.02
147 148 1.443828 GCGAAGATCTCCCCCTCAC 59.556 63.158 0.00 0.00 0.00 3.51
148 149 2.127869 CGCGAAGATCTCCCCCTCA 61.128 63.158 0.00 0.00 0.00 3.86
149 150 2.731374 CGCGAAGATCTCCCCCTC 59.269 66.667 0.00 0.00 0.00 4.30
150 151 3.541713 GCGCGAAGATCTCCCCCT 61.542 66.667 12.10 0.00 0.00 4.79
151 152 4.951963 CGCGCGAAGATCTCCCCC 62.952 72.222 28.94 0.00 0.00 5.40
153 154 4.873129 TGCGCGCGAAGATCTCCC 62.873 66.667 37.18 13.06 0.00 4.30
154 155 3.621394 GTGCGCGCGAAGATCTCC 61.621 66.667 37.18 13.89 0.00 3.71
155 156 3.621394 GGTGCGCGCGAAGATCTC 61.621 66.667 37.18 14.74 0.00 2.75
166 167 4.980805 TCGAACACTGGGGTGCGC 62.981 66.667 0.00 0.00 46.57 6.09
167 168 2.280524 TTCGAACACTGGGGTGCG 60.281 61.111 0.00 0.00 46.57 5.34
168 169 2.258726 GGTTCGAACACTGGGGTGC 61.259 63.158 28.24 5.21 46.57 5.01
170 171 1.426751 TAAGGTTCGAACACTGGGGT 58.573 50.000 28.24 11.07 0.00 4.95
171 172 2.423577 CTTAAGGTTCGAACACTGGGG 58.576 52.381 28.24 10.57 0.00 4.96
172 173 2.423577 CCTTAAGGTTCGAACACTGGG 58.576 52.381 28.24 18.20 0.00 4.45
173 174 2.423577 CCCTTAAGGTTCGAACACTGG 58.576 52.381 28.24 20.01 0.00 4.00
185 186 1.893137 GTCCTGGCAAAACCCTTAAGG 59.107 52.381 15.14 15.14 43.78 2.69
186 187 1.893137 GGTCCTGGCAAAACCCTTAAG 59.107 52.381 6.68 0.00 37.83 1.85
187 188 2.003937 GGTCCTGGCAAAACCCTTAA 57.996 50.000 6.68 0.00 37.83 1.85
188 189 3.757836 GGTCCTGGCAAAACCCTTA 57.242 52.632 6.68 0.00 37.83 2.69
189 190 4.619233 GGTCCTGGCAAAACCCTT 57.381 55.556 6.68 0.00 37.83 3.95
192 193 1.110518 TTTCGGGTCCTGGCAAAACC 61.111 55.000 9.00 9.00 39.84 3.27
193 194 0.966179 ATTTCGGGTCCTGGCAAAAC 59.034 50.000 0.00 0.00 0.00 2.43
194 195 1.253100 GATTTCGGGTCCTGGCAAAA 58.747 50.000 0.00 0.00 0.00 2.44
195 196 0.610785 GGATTTCGGGTCCTGGCAAA 60.611 55.000 0.00 0.00 32.85 3.68
196 197 1.001393 GGATTTCGGGTCCTGGCAA 60.001 57.895 0.00 0.00 32.85 4.52
197 198 2.674754 GGATTTCGGGTCCTGGCA 59.325 61.111 0.00 0.00 32.85 4.92
198 199 2.513897 CGGATTTCGGGTCCTGGC 60.514 66.667 0.00 0.00 33.46 4.85
199 200 1.153429 GTCGGATTTCGGGTCCTGG 60.153 63.158 0.00 0.00 39.77 4.45
200 201 0.036765 TTGTCGGATTTCGGGTCCTG 60.037 55.000 0.00 0.00 39.77 3.86
201 202 0.036671 GTTGTCGGATTTCGGGTCCT 60.037 55.000 0.00 0.00 39.77 3.85
202 203 1.022982 GGTTGTCGGATTTCGGGTCC 61.023 60.000 0.00 0.00 39.77 4.46
203 204 0.320946 TGGTTGTCGGATTTCGGGTC 60.321 55.000 0.00 0.00 39.77 4.46
204 205 0.604511 GTGGTTGTCGGATTTCGGGT 60.605 55.000 0.00 0.00 39.77 5.28
205 206 1.303091 GGTGGTTGTCGGATTTCGGG 61.303 60.000 0.00 0.00 39.77 5.14
206 207 0.321298 AGGTGGTTGTCGGATTTCGG 60.321 55.000 0.00 0.00 39.77 4.30
207 208 1.463444 GAAGGTGGTTGTCGGATTTCG 59.537 52.381 0.00 0.00 40.90 3.46
208 209 2.500229 TGAAGGTGGTTGTCGGATTTC 58.500 47.619 0.00 0.00 0.00 2.17
209 210 2.649531 TGAAGGTGGTTGTCGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
210 211 2.618045 GGATGAAGGTGGTTGTCGGATT 60.618 50.000 0.00 0.00 0.00 3.01
211 212 1.065418 GGATGAAGGTGGTTGTCGGAT 60.065 52.381 0.00 0.00 0.00 4.18
212 213 0.323629 GGATGAAGGTGGTTGTCGGA 59.676 55.000 0.00 0.00 0.00 4.55
213 214 0.036164 TGGATGAAGGTGGTTGTCGG 59.964 55.000 0.00 0.00 0.00 4.79
214 215 1.442769 CTGGATGAAGGTGGTTGTCG 58.557 55.000 0.00 0.00 0.00 4.35
215 216 1.168714 GCTGGATGAAGGTGGTTGTC 58.831 55.000 0.00 0.00 0.00 3.18
216 217 0.251341 GGCTGGATGAAGGTGGTTGT 60.251 55.000 0.00 0.00 0.00 3.32
217 218 0.967380 GGGCTGGATGAAGGTGGTTG 60.967 60.000 0.00 0.00 0.00 3.77
218 219 1.384191 GGGCTGGATGAAGGTGGTT 59.616 57.895 0.00 0.00 0.00 3.67
242 243 3.481112 AACGGACAATTTGTTATCGCC 57.519 42.857 3.08 0.00 0.00 5.54
246 247 5.241949 TGGCACTTAACGGACAATTTGTTAT 59.758 36.000 3.08 0.00 0.00 1.89
255 257 0.398696 ATGGTGGCACTTAACGGACA 59.601 50.000 18.45 4.44 0.00 4.02
261 263 4.032960 ACTTCATCATGGTGGCACTTAA 57.967 40.909 18.45 4.09 0.00 1.85
293 295 0.251297 CCAAGAAGTGGGCCATGTCA 60.251 55.000 10.70 0.00 44.64 3.58
402 633 7.160049 GCCCTTAGACTTCAAATATACTACCC 58.840 42.308 0.00 0.00 0.00 3.69
405 636 7.080353 AGGGCCCTTAGACTTCAAATATACTA 58.920 38.462 22.28 0.00 0.00 1.82
421 652 2.243478 TGTGATGCATAAAGGGCCCTTA 59.757 45.455 37.33 24.06 34.84 2.69
422 653 1.006998 TGTGATGCATAAAGGGCCCTT 59.993 47.619 32.48 32.48 37.98 3.95
437 668 8.255111 TCACATCTATGGTCTTCTTATGTGAT 57.745 34.615 10.31 0.00 40.28 3.06
461 692 5.126779 AGGACCTTGAAAGAAAGACAGTTC 58.873 41.667 0.00 0.00 0.00 3.01
815 2555 1.439543 ACAGAAACCCCAGAAGAGCT 58.560 50.000 0.00 0.00 0.00 4.09
838 2578 0.884704 GGCAGCAGAGGAAAACACGA 60.885 55.000 0.00 0.00 0.00 4.35
964 2720 3.238597 TGAACCCCCAAAATTTCTGGAG 58.761 45.455 16.38 11.47 35.85 3.86
1041 2797 4.229123 ACTTTCATCAGGGGAATCTCACAT 59.771 41.667 0.00 0.00 0.00 3.21
1043 2799 4.227864 ACTTTCATCAGGGGAATCTCAC 57.772 45.455 0.00 0.00 0.00 3.51
1143 2901 9.453572 TCAAAATGAGCTTTATCAGTATTCAGT 57.546 29.630 0.00 0.00 31.44 3.41
1193 2951 3.069586 CACCGTATCCCAGAGAATAGCAA 59.930 47.826 0.00 0.00 0.00 3.91
1196 2958 2.028930 GGCACCGTATCCCAGAGAATAG 60.029 54.545 0.00 0.00 0.00 1.73
1258 3020 3.003480 GACTAATTCCAGCAGGTGACAC 58.997 50.000 0.00 0.00 35.89 3.67
1304 3066 2.399356 GCCGCAGAGCTAACCCAAC 61.399 63.158 0.00 0.00 0.00 3.77
1323 3085 2.734079 GCTATACTGATTCGCTTGCTCC 59.266 50.000 0.00 0.00 0.00 4.70
1380 3142 0.389391 TCTGCTACCCATAGAAGCGC 59.611 55.000 0.00 0.00 39.14 5.92
1493 3262 2.543848 CACCTGCGTGCGTGATATAATT 59.456 45.455 0.00 0.00 32.04 1.40
1599 3368 5.762825 TCAATTAATGCTGCAGATTCTCC 57.237 39.130 20.43 0.00 0.00 3.71
1629 3399 1.127567 AAGCTCAGCCCACCACTGTA 61.128 55.000 0.00 0.00 36.50 2.74
1663 3433 6.258507 ACCAAAAGAAGCAATTAAAACTGCAG 59.741 34.615 13.48 13.48 41.17 4.41
1843 3710 2.808543 CGTGTCCTCCCTTTTCTTTCTG 59.191 50.000 0.00 0.00 0.00 3.02
1929 3798 2.188994 GCTCCAGATCCAGCGCTT 59.811 61.111 7.50 0.00 0.00 4.68
1983 3852 4.688419 CAGCAACAACGGCAGCGG 62.688 66.667 0.00 0.00 0.00 5.52
1985 3854 3.969802 AGCAGCAACAACGGCAGC 61.970 61.111 0.00 0.00 43.20 5.25
1986 3855 2.050714 CAGCAGCAACAACGGCAG 60.051 61.111 0.00 0.00 32.74 4.85
1987 3856 4.268939 GCAGCAGCAACAACGGCA 62.269 61.111 0.00 0.00 41.58 5.69
2064 3933 4.688419 CAGCAGCAACAACGGCGG 62.688 66.667 13.24 0.00 35.76 6.13
2094 4059 4.400109 CAGCAGCAGCAACGGCAG 62.400 66.667 3.17 0.00 45.49 4.85
2105 4070 4.437587 AGTGGGGGATGCAGCAGC 62.438 66.667 3.51 0.62 42.57 5.25
2106 4071 2.439701 CAGTGGGGGATGCAGCAG 60.440 66.667 3.51 0.00 0.00 4.24
2107 4072 4.746309 GCAGTGGGGGATGCAGCA 62.746 66.667 3.51 0.00 42.11 4.41
2108 4073 4.746309 TGCAGTGGGGGATGCAGC 62.746 66.667 0.00 0.00 46.97 5.25
2307 4304 4.752146 TGGATGCTATAGATCAATCTGCG 58.248 43.478 3.21 0.00 37.76 5.18
2320 4317 6.322201 CCATTTTAAGAACCACTGGATGCTAT 59.678 38.462 0.71 0.00 0.00 2.97
2334 4331 4.016444 CCCAGCTAGTGCCATTTTAAGAA 58.984 43.478 0.00 0.00 40.80 2.52
2373 4370 2.611292 GAGCCACAAAGAAGATGATCCG 59.389 50.000 0.00 0.00 0.00 4.18
2403 4400 1.559682 GCTAGTGTCATTTCCTCCCCA 59.440 52.381 0.00 0.00 0.00 4.96
2406 4403 3.618690 ACAGCTAGTGTCATTTCCTCC 57.381 47.619 0.00 0.00 31.90 4.30
2416 4413 5.048364 CAGTAACTCTCTGAACAGCTAGTGT 60.048 44.000 8.72 0.00 43.24 3.55
2503 4500 9.437045 GTTAAAGACGGAAAAATAACGAGAAAA 57.563 29.630 0.00 0.00 0.00 2.29
2559 4557 6.263842 TCGGGGATACGGCAAGTATATATAAG 59.736 42.308 4.37 0.00 45.47 1.73
2592 4590 3.772025 TGGGATACGGCATTTTCCAAAAT 59.228 39.130 0.00 0.00 36.83 1.82
2614 4612 0.901827 TGACACGCATACAGGGACAT 59.098 50.000 0.00 0.00 0.00 3.06
2633 4631 1.609635 TACGGCGACATGGACATGGT 61.610 55.000 16.62 6.77 42.91 3.55
2636 4634 0.033504 GGATACGGCGACATGGACAT 59.966 55.000 16.62 0.00 0.00 3.06
2641 4639 0.601046 AGCATGGATACGGCGACATG 60.601 55.000 16.62 21.18 43.52 3.21
2642 4640 0.106708 AAGCATGGATACGGCGACAT 59.893 50.000 16.62 9.57 43.52 3.06
2651 4649 9.755122 AGTCATATACACTAGTAAGCATGGATA 57.245 33.333 0.00 0.00 33.13 2.59
2652 4650 8.657387 AGTCATATACACTAGTAAGCATGGAT 57.343 34.615 0.00 0.00 33.13 3.41
2653 4651 9.582648 TTAGTCATATACACTAGTAAGCATGGA 57.417 33.333 0.00 0.00 33.13 3.41
2654 4652 9.627395 GTTAGTCATATACACTAGTAAGCATGG 57.373 37.037 0.00 0.00 33.13 3.66
2657 4655 8.627403 GGTGTTAGTCATATACACTAGTAAGCA 58.373 37.037 0.00 0.00 41.37 3.91
2658 4656 8.848182 AGGTGTTAGTCATATACACTAGTAAGC 58.152 37.037 0.00 1.95 41.37 3.09
2660 4658 9.910267 TGAGGTGTTAGTCATATACACTAGTAA 57.090 33.333 0.00 0.00 41.37 2.24
2661 4659 9.334947 GTGAGGTGTTAGTCATATACACTAGTA 57.665 37.037 0.00 0.00 41.37 1.82
2662 4660 7.832685 TGTGAGGTGTTAGTCATATACACTAGT 59.167 37.037 0.00 0.00 41.37 2.57
2663 4661 8.221965 TGTGAGGTGTTAGTCATATACACTAG 57.778 38.462 0.00 0.00 41.37 2.57
2664 4662 8.464404 GTTGTGAGGTGTTAGTCATATACACTA 58.536 37.037 0.00 0.00 41.37 2.74
2665 4663 7.039293 TGTTGTGAGGTGTTAGTCATATACACT 60.039 37.037 0.00 0.00 41.37 3.55
2666 4664 7.094631 TGTTGTGAGGTGTTAGTCATATACAC 58.905 38.462 0.00 0.00 41.01 2.90
2667 4665 7.234661 TGTTGTGAGGTGTTAGTCATATACA 57.765 36.000 0.00 0.00 0.00 2.29
2668 4666 6.255887 GCTGTTGTGAGGTGTTAGTCATATAC 59.744 42.308 0.00 0.00 0.00 1.47
2669 4667 6.338146 GCTGTTGTGAGGTGTTAGTCATATA 58.662 40.000 0.00 0.00 0.00 0.86
2670 4668 5.178797 GCTGTTGTGAGGTGTTAGTCATAT 58.821 41.667 0.00 0.00 0.00 1.78
2671 4669 4.566004 GCTGTTGTGAGGTGTTAGTCATA 58.434 43.478 0.00 0.00 0.00 2.15
2693 4691 1.153449 TGGGCTCCGCAATAGAACG 60.153 57.895 0.00 0.00 0.00 3.95
2806 4804 7.013942 AGTGTTTGTTCAACCCTCTTTAATACC 59.986 37.037 0.00 0.00 33.97 2.73
2963 4963 4.218417 GTCAGAACCCAGCAACAATAACAT 59.782 41.667 0.00 0.00 0.00 2.71
3084 5084 1.675552 CAGCATCACCAGCATCATCA 58.324 50.000 0.00 0.00 0.00 3.07
3085 5085 0.952280 CCAGCATCACCAGCATCATC 59.048 55.000 0.00 0.00 0.00 2.92
3086 5086 0.257905 ACCAGCATCACCAGCATCAT 59.742 50.000 0.00 0.00 0.00 2.45
3087 5087 0.038599 AACCAGCATCACCAGCATCA 59.961 50.000 0.00 0.00 0.00 3.07
3088 5088 1.180029 AAACCAGCATCACCAGCATC 58.820 50.000 0.00 0.00 0.00 3.91
3089 5089 1.274167 CAAAACCAGCATCACCAGCAT 59.726 47.619 0.00 0.00 0.00 3.79
3090 5090 0.675083 CAAAACCAGCATCACCAGCA 59.325 50.000 0.00 0.00 0.00 4.41
3091 5091 0.675633 ACAAAACCAGCATCACCAGC 59.324 50.000 0.00 0.00 0.00 4.85
3092 5092 2.546373 CCAACAAAACCAGCATCACCAG 60.546 50.000 0.00 0.00 0.00 4.00
3095 5095 1.873486 GCCCAACAAAACCAGCATCAC 60.873 52.381 0.00 0.00 0.00 3.06
3132 5141 9.629649 AACATATCCCTTCCATAAATAGGAGTA 57.370 33.333 0.00 0.00 36.33 2.59
3203 5213 1.140312 AGGCGGATAATGGTGGTCAT 58.860 50.000 0.00 0.00 37.79 3.06
3215 5225 0.253327 GAAAGGACCAGAAGGCGGAT 59.747 55.000 0.00 0.00 39.06 4.18
3359 5394 1.173043 CTCCTCGTGCTCTGAAGTCT 58.827 55.000 0.00 0.00 0.00 3.24
3561 5681 3.151554 AGCAATCACAAGAGACAATGCA 58.848 40.909 0.00 0.00 35.11 3.96
3629 5749 9.174166 AGCATTAGTAACCCTAAAGTACAATTG 57.826 33.333 3.24 3.24 39.07 2.32
3676 5796 5.107065 CGTTAACTTCCTCAGTTTAAGCAGG 60.107 44.000 3.71 0.00 43.89 4.85
3793 5990 1.093972 CCCGCATAGTGCATTCAACA 58.906 50.000 2.63 0.00 45.36 3.33
3822 6019 8.906867 AGTTAGGAATACGCTTGTGTATAGTTA 58.093 33.333 7.18 0.00 34.01 2.24
3823 6020 7.779073 AGTTAGGAATACGCTTGTGTATAGTT 58.221 34.615 7.18 0.00 34.01 2.24
3824 6021 7.344095 AGTTAGGAATACGCTTGTGTATAGT 57.656 36.000 7.18 0.00 34.01 2.12
3827 6024 8.853126 TGTATAGTTAGGAATACGCTTGTGTAT 58.147 33.333 1.44 1.44 36.62 2.29
3828 6025 8.131100 GTGTATAGTTAGGAATACGCTTGTGTA 58.869 37.037 0.00 0.00 36.56 2.90
3829 6026 6.976925 GTGTATAGTTAGGAATACGCTTGTGT 59.023 38.462 0.00 0.00 36.56 3.72
3830 6027 6.976349 TGTGTATAGTTAGGAATACGCTTGTG 59.024 38.462 7.35 0.00 39.00 3.33
3831 6028 7.104043 TGTGTATAGTTAGGAATACGCTTGT 57.896 36.000 7.35 0.00 39.00 3.16
3832 6029 7.306632 GCTTGTGTATAGTTAGGAATACGCTTG 60.307 40.741 7.35 2.78 39.00 4.01
3833 6030 6.700520 GCTTGTGTATAGTTAGGAATACGCTT 59.299 38.462 7.35 0.00 39.00 4.68
3834 6031 6.183360 TGCTTGTGTATAGTTAGGAATACGCT 60.183 38.462 7.35 0.00 39.00 5.07
3835 6032 5.981315 TGCTTGTGTATAGTTAGGAATACGC 59.019 40.000 0.00 0.00 38.80 4.42
3836 6033 7.705325 ACTTGCTTGTGTATAGTTAGGAATACG 59.295 37.037 0.00 0.00 32.34 3.06
3837 6034 8.943909 ACTTGCTTGTGTATAGTTAGGAATAC 57.056 34.615 0.00 0.00 0.00 1.89
3838 6035 9.953565 AAACTTGCTTGTGTATAGTTAGGAATA 57.046 29.630 0.00 0.00 0.00 1.75
3839 6036 8.863872 AAACTTGCTTGTGTATAGTTAGGAAT 57.136 30.769 0.00 0.00 0.00 3.01
3840 6037 8.685838 AAAACTTGCTTGTGTATAGTTAGGAA 57.314 30.769 0.00 0.00 0.00 3.36
3902 6099 3.187227 GGAATGAAGCACACAGTACACAG 59.813 47.826 0.00 0.00 0.00 3.66
3971 6168 7.552687 ACAGCGTTCTGAAATCATTCCTAAATA 59.447 33.333 0.00 0.00 42.95 1.40
4139 6374 2.158325 TCAAACCTTTGAGAATGCCCCT 60.158 45.455 0.00 0.00 41.88 4.79
4296 6531 0.890996 GCCTCACCAGTCAAACAGGG 60.891 60.000 0.00 0.00 0.00 4.45
4798 7045 0.692476 TTGTGCCCAGTCAGCAGTAT 59.308 50.000 0.00 0.00 41.87 2.12
5013 7260 5.795972 AGGATATGATGACATTCTCTGCAG 58.204 41.667 7.63 7.63 37.87 4.41
5372 7619 4.533124 TGGGGAGGATAGCGCGGA 62.533 66.667 8.83 0.00 0.00 5.54
5576 7823 3.136626 AGGTTGGACAGAAGTAGTGCTTT 59.863 43.478 0.00 0.00 37.59 3.51
6347 8594 5.858381 TGTTGATCAGTAAGAAGCTCTGTT 58.142 37.500 0.00 0.00 0.00 3.16
6383 8630 1.128692 GTTCGGTTCTGCATGCTGTAC 59.871 52.381 20.33 20.76 0.00 2.90
6809 9057 6.494666 TTGGATAGAACATAGGGTTACCAG 57.505 41.667 2.98 0.00 40.63 4.00
6838 9086 5.680619 TCAGAGTGCAAGTAAAAGAAAGGA 58.319 37.500 0.00 0.00 0.00 3.36
6870 9118 6.880529 TGATAGCAATCTGATGAAAACACTCA 59.119 34.615 0.00 0.00 32.93 3.41
6872 9120 6.883217 AGTGATAGCAATCTGATGAAAACACT 59.117 34.615 0.00 0.00 32.93 3.55
6873 9121 7.081526 AGTGATAGCAATCTGATGAAAACAC 57.918 36.000 0.00 0.00 32.93 3.32
6910 9158 1.485066 ACAACCAGGTCTCGTCAACTT 59.515 47.619 0.00 0.00 0.00 2.66
6953 9202 4.315803 CGTCCCAAACTAAGTGTCTCAAT 58.684 43.478 0.00 0.00 0.00 2.57
6966 9215 0.248565 GTACTCCCTCCGTCCCAAAC 59.751 60.000 0.00 0.00 0.00 2.93
7030 9279 7.166167 GGGTATGGAGAACTGTTCTTTCTTTA 58.834 38.462 22.80 11.82 40.87 1.85
7050 9405 3.534357 TGGTGACAAAACATGGGGTAT 57.466 42.857 0.00 0.00 37.44 2.73
7174 9529 7.010460 GCAGGTAAATATCACCAAAAATTCAGC 59.990 37.037 8.69 0.00 38.62 4.26
7197 9552 6.017400 AGAATTTGGATGTTACAACTGCAG 57.983 37.500 13.48 13.48 0.00 4.41
7281 9636 6.127535 GGATCCAAGAGAAAGCAAAATGATGA 60.128 38.462 6.95 0.00 0.00 2.92
7286 9641 5.568223 GCAAGGATCCAAGAGAAAGCAAAAT 60.568 40.000 15.82 0.00 0.00 1.82
7614 9985 1.275291 TGACAGAACGAAGGCTTAGGG 59.725 52.381 12.07 1.88 0.00 3.53
7651 10022 3.004024 ACAGAAATGCAACAGAAAGCG 57.996 42.857 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.