Multiple sequence alignment - TraesCS5D01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G333700 chr5D 100.000 7183 0 0 1 7183 423543337 423536155 0.000000e+00 13265.0
1 TraesCS5D01G333700 chr5A 94.732 2373 56 16 3457 5779 537129687 537127334 0.000000e+00 3626.0
2 TraesCS5D01G333700 chr5A 96.857 1877 50 6 1462 3333 537131559 537129687 0.000000e+00 3131.0
3 TraesCS5D01G333700 chr5A 88.817 1395 78 22 5766 7110 537127314 537125948 0.000000e+00 1640.0
4 TraesCS5D01G333700 chr5A 88.666 1297 91 22 182 1454 537132862 537131598 0.000000e+00 1530.0
5 TraesCS5D01G333700 chr5A 83.707 491 71 9 257 740 616167986 616167498 8.490000e-124 455.0
6 TraesCS5D01G333700 chr5A 78.899 654 120 15 3748 4395 537257350 537256709 1.850000e-115 427.0
7 TraesCS5D01G333700 chr5A 75.506 543 81 29 6327 6861 537121845 537121347 1.210000e-52 219.0
8 TraesCS5D01G333700 chr5A 87.421 159 5 1 4 162 537134084 537133941 1.240000e-37 169.0
9 TraesCS5D01G333700 chr5A 79.295 227 28 11 6301 6520 537120001 537119787 2.700000e-29 141.0
10 TraesCS5D01G333700 chr5B 94.524 2374 54 15 3457 5779 511398927 511396579 0.000000e+00 3594.0
11 TraesCS5D01G333700 chr5B 97.280 1875 45 3 1464 3333 511400800 511398927 0.000000e+00 3175.0
12 TraesCS5D01G333700 chr5B 88.702 894 62 13 5766 6641 511396559 511395687 0.000000e+00 1055.0
13 TraesCS5D01G333700 chr5B 86.927 872 83 19 598 1454 511401696 511400841 0.000000e+00 950.0
14 TraesCS5D01G333700 chr5B 89.241 474 26 8 6662 7110 511395622 511395149 2.910000e-158 569.0
15 TraesCS5D01G333700 chr5B 85.811 444 51 8 298 730 325960237 325960679 1.830000e-125 460.0
16 TraesCS5D01G333700 chr5B 80.428 608 100 13 3795 4395 511610430 511609835 5.110000e-121 446.0
17 TraesCS5D01G333700 chr5B 92.308 65 3 2 3390 3454 22815154 22815092 2.760000e-14 91.6
18 TraesCS5D01G333700 chr2B 82.893 643 89 11 3612 4246 801190560 801191189 6.290000e-155 558.0
19 TraesCS5D01G333700 chr2B 83.202 506 66 15 240 735 797570517 797570021 5.110000e-121 446.0
20 TraesCS5D01G333700 chr2B 90.000 90 9 0 3332 3421 294208245 294208156 4.550000e-22 117.0
21 TraesCS5D01G333700 chr2B 82.692 104 11 6 3329 3427 643680707 643680606 1.280000e-12 86.1
22 TraesCS5D01G333700 chr1A 85.057 522 57 18 240 755 483681174 483681680 4.970000e-141 512.0
23 TraesCS5D01G333700 chr1D 85.259 502 61 12 243 738 442153348 442153842 8.320000e-139 505.0
24 TraesCS5D01G333700 chr6A 83.946 517 61 18 232 738 100428632 100428128 6.520000e-130 475.0
25 TraesCS5D01G333700 chr6D 83.794 506 70 9 240 742 33892777 33893273 3.030000e-128 470.0
26 TraesCS5D01G333700 chr6D 81.961 571 86 16 230 786 61168958 61169525 1.090000e-127 468.0
27 TraesCS5D01G333700 chr6D 93.846 65 2 2 3324 3387 293177232 293177295 5.930000e-16 97.1
28 TraesCS5D01G333700 chr6B 81.977 516 71 18 254 763 57291376 57290877 1.110000e-112 418.0
29 TraesCS5D01G333700 chr6B 80.392 510 74 15 2822 3320 550811294 550810800 1.470000e-96 364.0
30 TraesCS5D01G333700 chr2D 80.739 514 70 13 2822 3320 282939278 282938779 2.450000e-99 374.0
31 TraesCS5D01G333700 chr2D 81.847 314 34 12 2822 3121 87847451 87847755 7.200000e-60 243.0
32 TraesCS5D01G333700 chr2D 95.082 61 2 1 3383 3443 498106187 498106246 2.130000e-15 95.3
33 TraesCS5D01G333700 chr2D 87.838 74 4 3 3388 3460 316269822 316269753 1.660000e-11 82.4
34 TraesCS5D01G333700 chr4B 81.301 246 26 14 2889 3123 588065939 588065703 1.590000e-41 182.0
35 TraesCS5D01G333700 chr4B 95.522 67 1 2 3388 3454 28618525 28618461 9.860000e-19 106.0
36 TraesCS5D01G333700 chr1B 80.193 207 35 4 1895 2099 121773697 121773899 4.490000e-32 150.0
37 TraesCS5D01G333700 chr3D 87.179 117 12 3 3332 3447 329496339 329496225 5.850000e-26 130.0
38 TraesCS5D01G333700 chr7D 96.610 59 2 0 3329 3387 578621324 578621266 1.650000e-16 99.0
39 TraesCS5D01G333700 chr7B 96.610 59 2 0 3329 3387 594024542 594024600 1.650000e-16 99.0
40 TraesCS5D01G333700 chr4D 95.161 62 3 0 3326 3387 43645043 43644982 1.650000e-16 99.0
41 TraesCS5D01G333700 chr4D 96.552 58 2 0 3386 3443 455326533 455326590 5.930000e-16 97.1
42 TraesCS5D01G333700 chr4D 93.651 63 4 0 3325 3387 117421359 117421297 2.130000e-15 95.3
43 TraesCS5D01G333700 chrUn 94.915 59 3 0 3388 3446 248494735 248494677 7.670000e-15 93.5
44 TraesCS5D01G333700 chrUn 86.585 82 7 3 3332 3413 108250277 108250354 3.570000e-13 87.9
45 TraesCS5D01G333700 chr2A 90.769 65 4 2 3390 3454 389220623 389220561 1.280000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G333700 chr5D 423536155 423543337 7182 True 13265.0 13265 100.0000 1 7183 1 chr5D.!!$R1 7182
1 TraesCS5D01G333700 chr5A 537125948 537134084 8136 True 2019.2 3626 91.2986 4 7110 5 chr5A.!!$R4 7106
2 TraesCS5D01G333700 chr5A 537256709 537257350 641 True 427.0 427 78.8990 3748 4395 1 chr5A.!!$R1 647
3 TraesCS5D01G333700 chr5B 511395149 511401696 6547 True 1868.6 3594 91.3348 598 7110 5 chr5B.!!$R3 6512
4 TraesCS5D01G333700 chr5B 511609835 511610430 595 True 446.0 446 80.4280 3795 4395 1 chr5B.!!$R2 600
5 TraesCS5D01G333700 chr2B 801190560 801191189 629 False 558.0 558 82.8930 3612 4246 1 chr2B.!!$F1 634
6 TraesCS5D01G333700 chr1A 483681174 483681680 506 False 512.0 512 85.0570 240 755 1 chr1A.!!$F1 515
7 TraesCS5D01G333700 chr6A 100428128 100428632 504 True 475.0 475 83.9460 232 738 1 chr6A.!!$R1 506
8 TraesCS5D01G333700 chr6D 61168958 61169525 567 False 468.0 468 81.9610 230 786 1 chr6D.!!$F2 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 1266 0.667487 CGACAGATCGCCACACAAGT 60.667 55.000 0.00 0.00 42.43 3.16 F
1017 2117 0.941542 GCGCCACACAACTAACTCAA 59.058 50.000 0.00 0.00 0.00 3.02 F
1500 2641 0.387239 GCCGATGTTTGGTGTGCTTC 60.387 55.000 0.00 0.00 0.00 3.86 F
1568 2709 0.464452 CCGAGGGATACGAGGCTTTT 59.536 55.000 0.00 0.00 37.60 2.27 F
2769 3911 1.380785 CCCCATTCACAGGCTGCAT 60.381 57.895 15.89 1.09 0.00 3.96 F
3346 4492 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36 F
3461 4607 1.998222 ATAGGAACGGAGGGAGTAGC 58.002 55.000 0.00 0.00 0.00 3.58 F
3959 5122 2.159490 GCATTTTCCATTGCCATGTTGC 60.159 45.455 0.00 0.00 32.66 4.17 F
5544 6772 0.398318 AGAAGGGCTCCAATATCGGC 59.602 55.000 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 2385 0.104120 TAGGGTTCGGACGCATGATG 59.896 55.000 14.07 0.00 40.90 3.07 R
2751 3893 1.380785 ATGCAGCCTGTGAATGGGG 60.381 57.895 0.00 0.00 0.00 4.96 R
3443 4589 0.106318 GGCTACTCCCTCCGTTCCTA 60.106 60.000 0.00 0.00 0.00 2.94 R
3444 4590 1.381463 GGCTACTCCCTCCGTTCCT 60.381 63.158 0.00 0.00 0.00 3.36 R
4469 5643 5.298989 TCCTGAAGCAAGTTTAGTAACCA 57.701 39.130 0.00 0.00 34.71 3.67 R
4929 6133 0.879090 CATCACTGCAGCAGCTTTCA 59.121 50.000 23.05 2.06 42.74 2.69 R
4930 6134 1.135746 GTCATCACTGCAGCAGCTTTC 60.136 52.381 23.05 4.88 42.74 2.62 R
5906 7164 1.759994 GATACATCAGACTCACGCGG 58.240 55.000 12.47 0.00 0.00 6.46 R
7150 8517 0.036388 AACTGATCGTCACCGCCATT 60.036 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.496429 ACTGCTTTGGCCCATATAGCT 59.504 47.619 0.00 0.00 37.74 3.32
61 62 5.594725 TCTCTCTACATCTTGGTCACCATAC 59.405 44.000 0.00 0.00 31.53 2.39
62 63 5.269189 TCTCTACATCTTGGTCACCATACA 58.731 41.667 0.00 0.00 31.53 2.29
63 64 5.719563 TCTCTACATCTTGGTCACCATACAA 59.280 40.000 0.00 0.00 31.53 2.41
64 65 6.384015 TCTCTACATCTTGGTCACCATACAAT 59.616 38.462 0.00 0.00 31.53 2.71
65 66 6.582636 TCTACATCTTGGTCACCATACAATC 58.417 40.000 0.00 0.00 31.53 2.67
66 67 4.526970 ACATCTTGGTCACCATACAATCC 58.473 43.478 0.00 0.00 31.53 3.01
67 68 4.018506 ACATCTTGGTCACCATACAATCCA 60.019 41.667 0.00 0.00 31.53 3.41
68 69 4.860802 TCTTGGTCACCATACAATCCAT 57.139 40.909 0.00 0.00 31.53 3.41
69 70 4.780815 TCTTGGTCACCATACAATCCATC 58.219 43.478 0.00 0.00 31.53 3.51
70 71 3.192541 TGGTCACCATACAATCCATCG 57.807 47.619 0.00 0.00 0.00 3.84
71 72 1.873591 GGTCACCATACAATCCATCGC 59.126 52.381 0.00 0.00 0.00 4.58
72 73 2.485479 GGTCACCATACAATCCATCGCT 60.485 50.000 0.00 0.00 0.00 4.93
73 74 3.244078 GGTCACCATACAATCCATCGCTA 60.244 47.826 0.00 0.00 0.00 4.26
74 75 4.563580 GGTCACCATACAATCCATCGCTAT 60.564 45.833 0.00 0.00 0.00 2.97
75 76 5.337250 GGTCACCATACAATCCATCGCTATA 60.337 44.000 0.00 0.00 0.00 1.31
102 103 6.612456 GGATTCTCCATGGATAGAGATCATCT 59.388 42.308 16.63 0.00 38.86 2.90
108 109 4.613925 TGGATAGAGATCATCTGCCAAC 57.386 45.455 0.00 0.00 39.48 3.77
126 127 3.181516 CCAACGCTAGAGCTTCATTGAAC 60.182 47.826 0.00 0.00 39.32 3.18
132 133 5.685954 CGCTAGAGCTTCATTGAACGTAATA 59.314 40.000 0.00 0.00 39.32 0.98
162 163 1.176527 CTCGGGTTGCACCAAATCAT 58.823 50.000 7.49 0.00 41.02 2.45
177 178 4.715896 CAAATCATGGAGAACAACTGTCG 58.284 43.478 0.00 0.00 0.00 4.35
178 179 3.961480 ATCATGGAGAACAACTGTCGA 57.039 42.857 0.00 0.00 0.00 4.20
179 180 3.744238 TCATGGAGAACAACTGTCGAA 57.256 42.857 0.00 0.00 0.00 3.71
187 1247 2.048127 AACTGTCGAAGCTCCCGC 60.048 61.111 3.86 1.17 0.00 6.13
206 1266 0.667487 CGACAGATCGCCACACAAGT 60.667 55.000 0.00 0.00 42.43 3.16
326 1398 8.876275 AAACTGTACGTGACTTACAAAATAGA 57.124 30.769 0.00 0.00 0.00 1.98
429 1501 6.712547 TGCGGGAATTTTAAAAATTGTTCCAT 59.287 30.769 23.11 0.00 37.45 3.41
430 1502 7.229506 TGCGGGAATTTTAAAAATTGTTCCATT 59.770 29.630 23.11 5.65 37.45 3.16
482 1556 3.471495 AATGTTCGCCGAATCAAGAAC 57.529 42.857 1.55 5.82 42.19 3.01
688 1770 7.593273 CGAAATTGAGAGTGATAGTGTATCTCC 59.407 40.741 0.00 0.00 36.42 3.71
702 1784 5.050490 GTGTATCTCCGTGATGTAGCAAAT 58.950 41.667 0.00 0.00 36.65 2.32
715 1797 4.793071 TGTAGCAAATTTTGGTCATGACG 58.207 39.130 19.33 4.39 42.20 4.35
769 1858 1.867166 GCGCAAGGTCCCTTCTATAC 58.133 55.000 0.30 0.00 33.42 1.47
772 1861 3.258622 GCGCAAGGTCCCTTCTATACTAT 59.741 47.826 0.30 0.00 33.42 2.12
852 1951 4.621068 TCAATGCGAAAAATAGAGCAGG 57.379 40.909 0.00 0.00 43.20 4.85
853 1952 3.378112 TCAATGCGAAAAATAGAGCAGGG 59.622 43.478 0.00 0.00 43.20 4.45
854 1953 1.750193 TGCGAAAAATAGAGCAGGGG 58.250 50.000 0.00 0.00 34.39 4.79
855 1954 1.004277 TGCGAAAAATAGAGCAGGGGT 59.996 47.619 0.00 0.00 34.39 4.95
856 1955 2.092323 GCGAAAAATAGAGCAGGGGTT 58.908 47.619 0.00 0.00 0.00 4.11
857 1956 3.275999 GCGAAAAATAGAGCAGGGGTTA 58.724 45.455 0.00 0.00 0.00 2.85
879 1978 0.947180 GTGAAGTTTACCGCGGCTGA 60.947 55.000 28.58 8.22 0.00 4.26
911 2010 3.771160 GCTCCCATCGGACGGTGT 61.771 66.667 4.14 0.00 33.32 4.16
914 2013 2.012902 CTCCCATCGGACGGTGTACC 62.013 65.000 4.14 0.00 33.32 3.34
1017 2117 0.941542 GCGCCACACAACTAACTCAA 59.058 50.000 0.00 0.00 0.00 3.02
1081 2183 2.103340 GGAGCGTTCCTCTCGAGC 59.897 66.667 11.59 0.00 40.58 5.03
1110 2212 2.754658 TCTCGAGAACCTCCGCCC 60.755 66.667 14.01 0.00 0.00 6.13
1242 2344 1.153289 CATCTGCTTCCAGGTCCGG 60.153 63.158 0.00 0.00 39.61 5.14
1282 2384 3.980698 TCCTTCCCACCCATTATTCTAGG 59.019 47.826 0.00 0.00 0.00 3.02
1283 2385 3.498661 CCTTCCCACCCATTATTCTAGGC 60.499 52.174 0.00 0.00 0.00 3.93
1340 2450 2.432285 CCCGCCGCCAAAATGTTG 60.432 61.111 0.00 0.00 34.25 3.33
1352 2462 3.044986 CAAAATGTTGCCACTTCACTCG 58.955 45.455 0.00 0.00 0.00 4.18
1355 2465 2.605837 TGTTGCCACTTCACTCGTTA 57.394 45.000 0.00 0.00 0.00 3.18
1370 2480 4.750098 CACTCGTTACAGTTCATTTCCACT 59.250 41.667 0.00 0.00 0.00 4.00
1393 2503 7.699391 CACTTACTGTTTATGCTCCATGAAATG 59.301 37.037 0.00 0.00 46.21 2.32
1403 2513 1.176527 CCATGAAATGCGGGTTCACT 58.823 50.000 0.00 0.00 44.97 3.41
1408 2518 3.482436 TGAAATGCGGGTTCACTAAGTT 58.518 40.909 0.00 0.00 30.08 2.66
1421 2531 3.807622 TCACTAAGTTTGCACTGTACTGC 59.192 43.478 0.00 0.00 37.70 4.40
1422 2532 3.058914 CACTAAGTTTGCACTGTACTGCC 60.059 47.826 4.79 0.00 36.21 4.85
1445 2555 1.336517 GCTTGCTGCTTGATTTCTGCA 60.337 47.619 0.00 0.00 38.95 4.41
1455 2565 3.206034 TGATTTCTGCACGCTGAAATG 57.794 42.857 29.78 0.00 46.80 2.32
1456 2566 2.553602 TGATTTCTGCACGCTGAAATGT 59.446 40.909 29.78 15.82 46.80 2.71
1457 2567 2.686558 TTTCTGCACGCTGAAATGTC 57.313 45.000 17.00 0.00 38.39 3.06
1458 2568 1.882912 TTCTGCACGCTGAAATGTCT 58.117 45.000 8.67 0.00 32.37 3.41
1459 2569 1.150827 TCTGCACGCTGAAATGTCTG 58.849 50.000 0.00 0.00 0.00 3.51
1460 2570 0.453950 CTGCACGCTGAAATGTCTGC 60.454 55.000 4.71 4.71 43.34 4.26
1500 2641 0.387239 GCCGATGTTTGGTGTGCTTC 60.387 55.000 0.00 0.00 0.00 3.86
1568 2709 0.464452 CCGAGGGATACGAGGCTTTT 59.536 55.000 0.00 0.00 37.60 2.27
2022 3164 3.685272 GCTTCTTGCCAGTAAAGTAGGAC 59.315 47.826 0.00 0.00 35.15 3.85
2078 3220 2.362397 TCGCATATCTGGTCTGTTCTCC 59.638 50.000 0.00 0.00 0.00 3.71
2163 3305 3.769300 TGGAGAAGATGATGAAGAACGGA 59.231 43.478 0.00 0.00 0.00 4.69
2280 3422 5.063564 GTGAAGGACTTCTATTAAACTGCGG 59.936 44.000 12.75 0.00 40.14 5.69
2320 3462 9.681062 TCTTTTAGAAACGATGGGAATTTCTAT 57.319 29.630 6.52 0.00 41.92 1.98
2328 3470 4.823989 CGATGGGAATTTCTATTGGCTCTT 59.176 41.667 0.00 0.00 0.00 2.85
2444 3586 4.833380 AGCTCTTTCCCCTTTCCTTTTTAC 59.167 41.667 0.00 0.00 0.00 2.01
2447 3589 4.587262 TCTTTCCCCTTTCCTTTTTACTGC 59.413 41.667 0.00 0.00 0.00 4.40
2448 3590 2.884320 TCCCCTTTCCTTTTTACTGCC 58.116 47.619 0.00 0.00 0.00 4.85
2611 3753 4.458989 GCACTGGTGATAATTTTCTCCACA 59.541 41.667 13.58 0.00 35.05 4.17
2769 3911 1.380785 CCCCATTCACAGGCTGCAT 60.381 57.895 15.89 1.09 0.00 3.96
2792 3934 7.385205 GCATGATACCTGACTTGTATCGTATTT 59.615 37.037 0.00 0.00 44.83 1.40
2989 4135 9.239002 CTGTAGAGTTTCGGTTTATATCTTCTG 57.761 37.037 0.00 0.00 0.00 3.02
3021 4167 2.493675 TGCTGTATGAAGACTTCGAGCT 59.506 45.455 20.20 0.00 0.00 4.09
3087 4233 7.502561 ACTTTACAGTGAGGCTTCAAACTAATT 59.497 33.333 0.00 0.00 34.49 1.40
3124 4270 5.981088 TCCAACTGTGATAAATGCATTGT 57.019 34.783 13.82 4.90 0.00 2.71
3131 4277 6.028146 TGTGATAAATGCATTGTTCTGCTT 57.972 33.333 13.82 0.00 42.75 3.91
3180 4326 5.749596 TTGAAATTGCTCAAGAAGAACGA 57.250 34.783 0.00 0.00 31.67 3.85
3335 4481 8.726870 TTTTACTTGCCCAATATGTACTACTC 57.273 34.615 0.00 0.00 0.00 2.59
3336 4482 5.291905 ACTTGCCCAATATGTACTACTCC 57.708 43.478 0.00 0.00 0.00 3.85
3337 4483 4.102681 ACTTGCCCAATATGTACTACTCCC 59.897 45.833 0.00 0.00 0.00 4.30
3338 4484 3.936461 TGCCCAATATGTACTACTCCCT 58.064 45.455 0.00 0.00 0.00 4.20
3339 4485 3.901844 TGCCCAATATGTACTACTCCCTC 59.098 47.826 0.00 0.00 0.00 4.30
3340 4486 3.261137 GCCCAATATGTACTACTCCCTCC 59.739 52.174 0.00 0.00 0.00 4.30
3341 4487 3.510360 CCCAATATGTACTACTCCCTCCG 59.490 52.174 0.00 0.00 0.00 4.63
3342 4488 4.150359 CCAATATGTACTACTCCCTCCGT 58.850 47.826 0.00 0.00 0.00 4.69
3343 4489 4.587684 CCAATATGTACTACTCCCTCCGTT 59.412 45.833 0.00 0.00 0.00 4.44
3344 4490 5.278858 CCAATATGTACTACTCCCTCCGTTC 60.279 48.000 0.00 0.00 0.00 3.95
3345 4491 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
3346 4492 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
3347 4493 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
3348 4494 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
3349 4495 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3350 4496 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3351 4497 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3352 4498 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3353 4499 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3354 4500 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
3355 4501 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
3356 4502 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
3357 4503 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3358 4504 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3359 4505 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3360 4506 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3361 4507 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3362 4508 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3396 4542 9.066892 TCAATATGGACTACATAATTTTGCTCC 57.933 33.333 0.00 0.00 44.75 4.70
3397 4543 7.672983 ATATGGACTACATAATTTTGCTCCG 57.327 36.000 0.00 0.00 44.75 4.63
3398 4544 4.839121 TGGACTACATAATTTTGCTCCGT 58.161 39.130 0.00 0.00 0.00 4.69
3399 4545 5.979993 TGGACTACATAATTTTGCTCCGTA 58.020 37.500 0.00 0.00 0.00 4.02
3400 4546 6.588204 TGGACTACATAATTTTGCTCCGTAT 58.412 36.000 0.00 0.00 0.00 3.06
3401 4547 6.481976 TGGACTACATAATTTTGCTCCGTATG 59.518 38.462 0.00 0.00 0.00 2.39
3402 4548 6.482308 GGACTACATAATTTTGCTCCGTATGT 59.518 38.462 0.00 0.00 38.56 2.29
3403 4549 7.654520 GGACTACATAATTTTGCTCCGTATGTA 59.345 37.037 0.00 0.00 36.86 2.29
3405 4551 8.589335 CTACATAATTTTGCTCCGTATGTAGT 57.411 34.615 15.95 0.00 43.94 2.73
3406 4552 7.478520 ACATAATTTTGCTCCGTATGTAGTC 57.521 36.000 0.00 0.00 34.46 2.59
3407 4553 6.482308 ACATAATTTTGCTCCGTATGTAGTCC 59.518 38.462 0.00 0.00 34.46 3.85
3408 4554 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3409 4555 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3410 4556 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3411 4557 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
3412 4558 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
3413 4559 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
3414 4560 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
3415 4561 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
3416 4562 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
3417 4563 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
3418 4564 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
3419 4565 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3420 4566 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3421 4567 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3422 4568 9.133627 CGTATGTAGTCCATATTGAAATCTCTG 57.866 37.037 0.00 0.00 38.29 3.35
3426 4572 9.958180 TGTAGTCCATATTGAAATCTCTGAAAA 57.042 29.630 0.00 0.00 0.00 2.29
3429 4575 9.171877 AGTCCATATTGAAATCTCTGAAAAGAC 57.828 33.333 0.00 0.00 0.00 3.01
3430 4576 9.171877 GTCCATATTGAAATCTCTGAAAAGACT 57.828 33.333 0.00 0.00 0.00 3.24
3431 4577 9.745018 TCCATATTGAAATCTCTGAAAAGACTT 57.255 29.630 0.00 0.00 0.00 3.01
3432 4578 9.784680 CCATATTGAAATCTCTGAAAAGACTTG 57.215 33.333 0.00 0.00 0.00 3.16
3450 4596 8.943909 AAGACTTGTATTTAGGAATAGGAACG 57.056 34.615 0.00 0.00 0.00 3.95
3451 4597 7.498443 AGACTTGTATTTAGGAATAGGAACGG 58.502 38.462 0.00 0.00 0.00 4.44
3452 4598 7.343833 AGACTTGTATTTAGGAATAGGAACGGA 59.656 37.037 0.00 0.00 0.00 4.69
3453 4599 7.498443 ACTTGTATTTAGGAATAGGAACGGAG 58.502 38.462 0.00 0.00 0.00 4.63
3454 4600 6.415206 TGTATTTAGGAATAGGAACGGAGG 57.585 41.667 0.00 0.00 0.00 4.30
3455 4601 4.976540 ATTTAGGAATAGGAACGGAGGG 57.023 45.455 0.00 0.00 0.00 4.30
3456 4602 3.693526 TTAGGAATAGGAACGGAGGGA 57.306 47.619 0.00 0.00 0.00 4.20
3461 4607 1.998222 ATAGGAACGGAGGGAGTAGC 58.002 55.000 0.00 0.00 0.00 3.58
3568 4729 6.820335 TCAGAATGTAAGCACTACTATGCAT 58.180 36.000 3.79 3.79 42.56 3.96
3597 4758 5.334802 CCGATGTGTAGATTTTGAAAGCACA 60.335 40.000 0.00 0.00 39.25 4.57
3702 4864 6.072175 TGTGAGCGCAGGAAAATTATTTAGTT 60.072 34.615 11.47 0.00 0.00 2.24
3959 5122 2.159490 GCATTTTCCATTGCCATGTTGC 60.159 45.455 0.00 0.00 32.66 4.17
3960 5123 3.340034 CATTTTCCATTGCCATGTTGCT 58.660 40.909 0.00 0.00 0.00 3.91
4259 5429 4.981794 AGTATAGGTGCGCAAAATTTGTC 58.018 39.130 14.00 0.00 0.00 3.18
4469 5643 8.765488 TTTATAACAATCACATGGATGGATGT 57.235 30.769 0.00 0.00 37.01 3.06
4508 5699 8.192774 TGCTTCAGGATTATTGCTTTCTTATTG 58.807 33.333 0.00 0.00 0.00 1.90
4532 5723 9.619316 TTGTTTTGAATACAAGTATACATGCAC 57.381 29.630 7.99 0.00 37.32 4.57
4754 5952 8.453681 TGATACACCTTCCTAGATGATAGGTAA 58.546 37.037 0.00 0.00 37.12 2.85
4795 5993 6.756542 TCATCATGTCTTATCACTTGGTAACG 59.243 38.462 0.00 0.00 42.51 3.18
4799 5997 5.242434 TGTCTTATCACTTGGTAACGCAAT 58.758 37.500 0.00 0.00 42.51 3.56
4841 6044 6.513806 TTACTTGCATGCAATTGTGATACT 57.486 33.333 31.96 8.27 35.20 2.12
4843 6046 5.404946 ACTTGCATGCAATTGTGATACTTC 58.595 37.500 31.96 0.00 35.20 3.01
4925 6129 6.655425 GGTTTAAACATATCCAGGGATAGAGC 59.345 42.308 19.57 0.00 40.01 4.09
4929 6133 6.460103 AACATATCCAGGGATAGAGCAAAT 57.540 37.500 13.13 0.00 40.01 2.32
4930 6134 5.813383 ACATATCCAGGGATAGAGCAAATG 58.187 41.667 13.13 8.35 40.01 2.32
4941 6145 1.067776 AGAGCAAATGAAAGCTGCTGC 60.068 47.619 1.35 7.62 46.19 5.25
4968 6172 2.376518 TGACCTGGAAAGGAGAAGCATT 59.623 45.455 0.00 0.00 0.00 3.56
5040 6244 2.489329 CCAACCTAGTCCGACGTCTAAA 59.511 50.000 14.70 0.00 0.00 1.85
5112 6316 8.465999 TCCCAAAATAGCAATGTAACATTACTG 58.534 33.333 0.00 0.00 34.77 2.74
5146 6350 7.523415 AGGTATGAAAACTTCCTTTTCTGGTA 58.477 34.615 7.00 0.00 45.67 3.25
5155 6359 7.554959 ACTTCCTTTTCTGGTATCAAGTCTA 57.445 36.000 0.00 0.00 0.00 2.59
5160 6364 7.400339 TCCTTTTCTGGTATCAAGTCTATGTCT 59.600 37.037 0.00 0.00 0.00 3.41
5169 6373 9.522804 GGTATCAAGTCTATGTCTAACAAGAAG 57.477 37.037 0.00 0.00 0.00 2.85
5273 6498 7.278461 TCAATAGCTTAGCTAGTTCAGTAGG 57.722 40.000 19.15 3.67 44.66 3.18
5281 6506 7.467131 GCTTAGCTAGTTCAGTAGGTACAGTAC 60.467 44.444 1.59 1.59 33.70 2.73
5297 6522 8.376889 GGTACAGTACCTAGTTCAGTAGATAC 57.623 42.308 21.13 0.00 45.52 2.24
5298 6523 7.989741 GGTACAGTACCTAGTTCAGTAGATACA 59.010 40.741 21.13 0.00 45.52 2.29
5299 6524 9.388506 GTACAGTACCTAGTTCAGTAGATACAA 57.611 37.037 0.00 0.00 0.00 2.41
5368 6593 4.718961 AGAAAACATCCAGTGTACAGCTT 58.281 39.130 0.00 0.00 41.14 3.74
5390 6618 3.706594 TCAGCTGAAGATCCGGATAACTT 59.293 43.478 19.15 17.39 0.00 2.66
5392 6620 5.010112 TCAGCTGAAGATCCGGATAACTTAG 59.990 44.000 19.15 13.09 0.00 2.18
5544 6772 0.398318 AGAAGGGCTCCAATATCGGC 59.602 55.000 0.00 0.00 0.00 5.54
5661 6889 6.521821 GCAATGTGCACAAATCAAATCATTTC 59.478 34.615 25.72 0.00 44.26 2.17
5771 7029 7.047891 TGACTCTTTTGTTTGTCAGTGACTAT 58.952 34.615 23.29 0.00 34.94 2.12
5806 7064 9.539825 CTTGATGTAAGTAATATCAGCAGTTCT 57.460 33.333 0.00 0.00 32.92 3.01
5839 7097 5.049167 TGTTGATGCTTTTGTTGGACAATC 58.951 37.500 0.00 0.00 38.00 2.67
5855 7113 9.744468 GTTGGACAATCTAGTTTATTTTTGTGT 57.256 29.630 0.00 0.00 0.00 3.72
6016 7274 8.867097 ACATAGTTTGTCCTTGTAGAGTTCTAA 58.133 33.333 0.00 0.00 30.89 2.10
6024 7282 8.696374 TGTCCTTGTAGAGTTCTAATTAGATGG 58.304 37.037 15.82 4.50 31.40 3.51
6025 7283 8.697292 GTCCTTGTAGAGTTCTAATTAGATGGT 58.303 37.037 15.82 3.99 31.40 3.55
6026 7284 9.268282 TCCTTGTAGAGTTCTAATTAGATGGTT 57.732 33.333 15.82 5.82 31.40 3.67
6051 7314 1.203441 ACCCGGTACCCTCCTTTTCC 61.203 60.000 6.25 0.00 0.00 3.13
6111 7374 5.793026 TCCAAGTCAAACAAACAAAATGC 57.207 34.783 0.00 0.00 0.00 3.56
6158 7421 2.826777 AATGCCACTTGGAGCCCTCG 62.827 60.000 0.00 0.00 37.39 4.63
6276 7543 6.657875 TGGAAAAATCAACTGAACCCAATTT 58.342 32.000 0.00 0.00 0.00 1.82
6277 7544 7.796054 TGGAAAAATCAACTGAACCCAATTTA 58.204 30.769 0.00 0.00 0.00 1.40
6325 7606 7.772166 ACTTAAAAATAAGTTATGCTGGAGGC 58.228 34.615 0.00 0.00 36.98 4.70
6355 7636 9.302345 CACCTAAATCGTGCCAGTATTATATAG 57.698 37.037 0.00 0.00 0.00 1.31
6356 7637 9.032624 ACCTAAATCGTGCCAGTATTATATAGT 57.967 33.333 0.00 0.00 0.00 2.12
6380 7661 8.040727 AGTAATAGTCATGTTGTTGTGCATCTA 58.959 33.333 0.00 0.00 0.00 1.98
6406 7687 7.893124 ATCAATCAAGAAATAAGTGCCATCT 57.107 32.000 0.00 0.00 0.00 2.90
6407 7688 7.092137 TCAATCAAGAAATAAGTGCCATCTG 57.908 36.000 0.00 0.00 0.00 2.90
6434 7715 3.627747 GGGGGTCTACTGATACAGTCTGT 60.628 52.174 10.99 10.99 41.21 3.41
6437 7718 5.411781 GGGTCTACTGATACAGTCTGTTTG 58.588 45.833 11.54 2.15 41.21 2.93
6449 7730 2.073816 GTCTGTTTGGGACGTGTATGG 58.926 52.381 0.00 0.00 0.00 2.74
6460 7741 4.039973 GGGACGTGTATGGATCAAAGGATA 59.960 45.833 0.00 0.00 32.67 2.59
6509 7796 4.602259 GCCACGGCAGGCGCTATA 62.602 66.667 17.72 0.00 46.12 1.31
6652 7939 3.618594 CACCATGTGGAGTTATCAGTTCG 59.381 47.826 5.96 0.00 38.94 3.95
6657 7944 2.993899 GTGGAGTTATCAGTTCGTGGTG 59.006 50.000 0.00 0.00 0.00 4.17
6814 8146 7.415206 GCCTCGTGAATTGTAACTTTGGATATT 60.415 37.037 0.00 0.00 0.00 1.28
6829 8161 5.968676 TGGATATTTGGTTAGCTGGTACT 57.031 39.130 0.00 0.00 0.00 2.73
6846 8179 3.741344 GGTACTTGTGCTAATATCTGGCG 59.259 47.826 0.00 0.00 0.00 5.69
7036 8403 1.580132 CGAAACAACATAGCGCCGC 60.580 57.895 2.29 0.00 0.00 6.53
7096 8463 2.529632 GGTTGGCTTGATTTTCTCCCT 58.470 47.619 0.00 0.00 0.00 4.20
7110 8477 7.561356 TGATTTTCTCCCTTTTTCTCTTCTTGT 59.439 33.333 0.00 0.00 0.00 3.16
7111 8478 6.699575 TTTCTCCCTTTTTCTCTTCTTGTG 57.300 37.500 0.00 0.00 0.00 3.33
7112 8479 4.718961 TCTCCCTTTTTCTCTTCTTGTGG 58.281 43.478 0.00 0.00 0.00 4.17
7113 8480 3.823304 CTCCCTTTTTCTCTTCTTGTGGG 59.177 47.826 0.00 0.00 0.00 4.61
7114 8481 2.297315 CCCTTTTTCTCTTCTTGTGGGC 59.703 50.000 0.00 0.00 0.00 5.36
7115 8482 2.958355 CCTTTTTCTCTTCTTGTGGGCA 59.042 45.455 0.00 0.00 0.00 5.36
7116 8483 3.575687 CCTTTTTCTCTTCTTGTGGGCAT 59.424 43.478 0.00 0.00 0.00 4.40
7117 8484 4.321527 CCTTTTTCTCTTCTTGTGGGCATC 60.322 45.833 0.00 0.00 0.00 3.91
7118 8485 2.099141 TTCTCTTCTTGTGGGCATCG 57.901 50.000 0.00 0.00 0.00 3.84
7119 8486 0.250234 TCTCTTCTTGTGGGCATCGG 59.750 55.000 0.00 0.00 0.00 4.18
7120 8487 1.372087 CTCTTCTTGTGGGCATCGGC 61.372 60.000 0.00 0.00 40.13 5.54
7121 8488 1.377725 CTTCTTGTGGGCATCGGCT 60.378 57.895 0.00 0.00 40.87 5.52
7122 8489 1.651240 CTTCTTGTGGGCATCGGCTG 61.651 60.000 0.00 0.00 40.87 4.85
7123 8490 3.136123 CTTGTGGGCATCGGCTGG 61.136 66.667 0.00 0.00 40.87 4.85
7130 8497 3.807538 GCATCGGCTGGCTGTGTG 61.808 66.667 0.00 3.83 36.96 3.82
7131 8498 3.807538 CATCGGCTGGCTGTGTGC 61.808 66.667 0.00 0.00 41.94 4.57
7135 8502 3.121030 GGCTGGCTGTGTGCGTAG 61.121 66.667 0.00 0.00 44.05 3.51
7136 8503 2.357517 GCTGGCTGTGTGCGTAGT 60.358 61.111 0.00 0.00 44.05 2.73
7137 8504 2.383527 GCTGGCTGTGTGCGTAGTC 61.384 63.158 0.00 0.00 44.05 2.59
7138 8505 1.290324 CTGGCTGTGTGCGTAGTCT 59.710 57.895 0.00 0.00 44.05 3.24
7139 8506 0.734253 CTGGCTGTGTGCGTAGTCTC 60.734 60.000 0.00 0.00 44.05 3.36
7140 8507 1.289066 GGCTGTGTGCGTAGTCTCA 59.711 57.895 0.00 0.00 44.05 3.27
7141 8508 0.108615 GGCTGTGTGCGTAGTCTCAT 60.109 55.000 0.00 0.00 44.05 2.90
7142 8509 1.134367 GGCTGTGTGCGTAGTCTCATA 59.866 52.381 0.00 0.00 44.05 2.15
7143 8510 2.455032 GCTGTGTGCGTAGTCTCATAG 58.545 52.381 0.00 0.00 0.00 2.23
7144 8511 2.796383 GCTGTGTGCGTAGTCTCATAGG 60.796 54.545 0.00 0.00 0.00 2.57
7145 8512 2.423892 CTGTGTGCGTAGTCTCATAGGT 59.576 50.000 0.00 0.00 0.00 3.08
7146 8513 2.163613 TGTGTGCGTAGTCTCATAGGTG 59.836 50.000 0.00 0.00 0.00 4.00
7147 8514 2.422479 GTGTGCGTAGTCTCATAGGTGA 59.578 50.000 0.00 0.00 0.00 4.02
7148 8515 3.086282 TGTGCGTAGTCTCATAGGTGAA 58.914 45.455 0.00 0.00 33.05 3.18
7149 8516 3.128764 TGTGCGTAGTCTCATAGGTGAAG 59.871 47.826 0.00 0.00 33.05 3.02
7150 8517 3.377485 GTGCGTAGTCTCATAGGTGAAGA 59.623 47.826 0.00 0.00 33.05 2.87
7151 8518 4.014406 TGCGTAGTCTCATAGGTGAAGAA 58.986 43.478 0.00 0.00 33.05 2.52
7152 8519 4.645136 TGCGTAGTCTCATAGGTGAAGAAT 59.355 41.667 0.00 0.00 33.05 2.40
7153 8520 4.979197 GCGTAGTCTCATAGGTGAAGAATG 59.021 45.833 0.00 0.00 33.05 2.67
7154 8521 5.524284 CGTAGTCTCATAGGTGAAGAATGG 58.476 45.833 0.00 0.00 33.05 3.16
7155 8522 4.414337 AGTCTCATAGGTGAAGAATGGC 57.586 45.455 0.00 0.00 33.05 4.40
7156 8523 3.126831 GTCTCATAGGTGAAGAATGGCG 58.873 50.000 0.00 0.00 33.05 5.69
7157 8524 2.103094 TCTCATAGGTGAAGAATGGCGG 59.897 50.000 0.00 0.00 33.05 6.13
7158 8525 1.837439 TCATAGGTGAAGAATGGCGGT 59.163 47.619 0.00 0.00 0.00 5.68
7159 8526 1.942657 CATAGGTGAAGAATGGCGGTG 59.057 52.381 0.00 0.00 0.00 4.94
7160 8527 1.271856 TAGGTGAAGAATGGCGGTGA 58.728 50.000 0.00 0.00 0.00 4.02
7161 8528 0.321653 AGGTGAAGAATGGCGGTGAC 60.322 55.000 0.00 0.00 0.00 3.67
7174 8541 1.790387 GGTGACGATCAGTTGCTGC 59.210 57.895 0.00 0.00 0.00 5.25
7175 8542 0.671781 GGTGACGATCAGTTGCTGCT 60.672 55.000 0.00 0.00 0.00 4.24
7176 8543 0.718343 GTGACGATCAGTTGCTGCTC 59.282 55.000 0.00 0.00 0.00 4.26
7178 8545 3.392431 CGATCAGTTGCTGCTCGG 58.608 61.111 12.69 0.00 43.45 4.63
7179 8546 2.169789 CGATCAGTTGCTGCTCGGG 61.170 63.158 12.69 0.00 43.45 5.14
7180 8547 1.078848 GATCAGTTGCTGCTCGGGT 60.079 57.895 0.00 0.00 0.00 5.28
7181 8548 1.364626 GATCAGTTGCTGCTCGGGTG 61.365 60.000 0.00 0.00 0.00 4.61
7182 8549 3.730761 CAGTTGCTGCTCGGGTGC 61.731 66.667 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.230108 CCAAAGCAGTTCCATTATACATGAGAT 59.770 37.037 0.00 0.00 0.00 2.75
2 3 6.732154 CCAAAGCAGTTCCATTATACATGAG 58.268 40.000 0.00 0.00 0.00 2.90
37 38 4.047627 TGGTGACCAAGATGTAGAGAGA 57.952 45.455 0.00 0.00 0.00 3.10
126 127 4.230657 CCCGAGATTCTGAAGCTATTACG 58.769 47.826 8.32 7.72 0.00 3.18
132 133 1.677217 GCAACCCGAGATTCTGAAGCT 60.677 52.381 8.06 8.06 0.00 3.74
162 163 1.412710 AGCTTCGACAGTTGTTCTCCA 59.587 47.619 0.00 0.00 0.00 3.86
164 165 2.062519 GGAGCTTCGACAGTTGTTCTC 58.937 52.381 0.00 0.00 0.00 2.87
166 167 1.149148 GGGAGCTTCGACAGTTGTTC 58.851 55.000 0.00 0.00 0.00 3.18
167 168 0.600255 CGGGAGCTTCGACAGTTGTT 60.600 55.000 4.68 0.00 0.00 2.83
169 170 3.862124 CGGGAGCTTCGACAGTTG 58.138 61.111 4.68 0.00 0.00 3.16
206 1266 2.751259 ACGAGCAATAACGACAGAGGTA 59.249 45.455 0.00 0.00 0.00 3.08
688 1770 4.793071 TGACCAAAATTTGCTACATCACG 58.207 39.130 0.00 0.00 0.00 4.35
702 1784 6.573664 AATCTTCAATCGTCATGACCAAAA 57.426 33.333 20.03 6.89 0.00 2.44
750 1839 1.413077 AGTATAGAAGGGACCTTGCGC 59.587 52.381 8.61 0.00 36.26 6.09
848 1947 2.287977 AACTTCACCTTAACCCCTGC 57.712 50.000 0.00 0.00 0.00 4.85
849 1948 4.077108 GGTAAACTTCACCTTAACCCCTG 58.923 47.826 0.00 0.00 32.98 4.45
850 1949 3.244665 CGGTAAACTTCACCTTAACCCCT 60.245 47.826 0.00 0.00 33.62 4.79
851 1950 3.076621 CGGTAAACTTCACCTTAACCCC 58.923 50.000 0.00 0.00 33.62 4.95
852 1951 2.485426 GCGGTAAACTTCACCTTAACCC 59.515 50.000 0.00 0.00 33.62 4.11
853 1952 2.158254 CGCGGTAAACTTCACCTTAACC 59.842 50.000 0.00 0.00 33.62 2.85
854 1953 2.158254 CCGCGGTAAACTTCACCTTAAC 59.842 50.000 19.50 0.00 33.62 2.01
855 1954 2.415776 CCGCGGTAAACTTCACCTTAA 58.584 47.619 19.50 0.00 33.62 1.85
856 1955 1.940752 GCCGCGGTAAACTTCACCTTA 60.941 52.381 28.70 0.00 33.62 2.69
857 1956 1.232621 GCCGCGGTAAACTTCACCTT 61.233 55.000 28.70 0.00 33.62 3.50
879 1978 3.011517 AGCGGTGAGGCTGGGATT 61.012 61.111 0.00 0.00 42.86 3.01
914 2013 1.520342 GCTTAGGCCTGCGACTCAG 60.520 63.158 17.99 0.65 42.49 3.35
1071 2173 4.405671 ACGACGGGCTCGAGAGGA 62.406 66.667 15.95 0.00 46.14 3.71
1242 2344 3.645268 AAGGGGATCAGCAACCGGC 62.645 63.158 0.00 0.00 45.30 6.13
1282 2384 2.709475 GGTTCGGACGCATGATGC 59.291 61.111 7.49 7.49 40.69 3.91
1283 2385 0.104120 TAGGGTTCGGACGCATGATG 59.896 55.000 14.07 0.00 40.90 3.07
1340 2450 2.150397 ACTGTAACGAGTGAAGTGGC 57.850 50.000 0.00 0.00 0.00 5.01
1352 2462 7.492352 ACAGTAAGTGGAAATGAACTGTAAC 57.508 36.000 4.23 0.00 44.11 2.50
1355 2465 8.567948 CATAAACAGTAAGTGGAAATGAACTGT 58.432 33.333 0.30 0.30 46.95 3.55
1370 2480 6.563422 GCATTTCATGGAGCATAAACAGTAA 58.437 36.000 0.00 0.00 0.00 2.24
1393 2503 0.948678 TGCAAACTTAGTGAACCCGC 59.051 50.000 0.00 0.00 0.00 6.13
1403 2513 2.139917 CGGCAGTACAGTGCAAACTTA 58.860 47.619 10.98 0.00 45.93 2.24
1408 2518 4.041617 CACGGCAGTACAGTGCAA 57.958 55.556 10.98 0.00 45.93 4.08
1427 2537 1.335233 CGTGCAGAAATCAAGCAGCAA 60.335 47.619 0.00 0.00 39.21 3.91
1454 2564 1.014044 GCTGAACCGAATCGCAGACA 61.014 55.000 11.81 2.42 42.51 3.41
1455 2565 0.737715 AGCTGAACCGAATCGCAGAC 60.738 55.000 11.81 4.68 42.51 3.51
1456 2566 0.737367 CAGCTGAACCGAATCGCAGA 60.737 55.000 8.42 0.00 45.75 4.26
1457 2567 0.737367 TCAGCTGAACCGAATCGCAG 60.737 55.000 15.67 0.42 0.00 5.18
1458 2568 1.014044 GTCAGCTGAACCGAATCGCA 61.014 55.000 20.19 0.00 0.00 5.10
1459 2569 1.696832 GGTCAGCTGAACCGAATCGC 61.697 60.000 21.71 3.45 0.00 4.58
1460 2570 0.108615 AGGTCAGCTGAACCGAATCG 60.109 55.000 28.05 0.00 30.36 3.34
1500 2641 3.274288 GCCTAGACAATTTGGTCTCCTG 58.726 50.000 1.92 0.00 44.63 3.86
1517 2658 0.909610 CCCCAGACAAGTCCTGCCTA 60.910 60.000 0.00 0.00 0.00 3.93
1568 2709 3.921630 TCGAAGAACGATTGCACGAAATA 59.078 39.130 3.48 0.00 46.45 1.40
1646 2787 2.548493 CCAACACCCAATGCTCCAAAAG 60.548 50.000 0.00 0.00 0.00 2.27
1660 2802 2.758423 AGAAAACAACACCTCCAACACC 59.242 45.455 0.00 0.00 0.00 4.16
2022 3164 7.457024 TTGGCACATCATATGGAAATCATAG 57.543 36.000 2.13 0.00 39.03 2.23
2078 3220 5.291858 AGCACAGTACATATCATCACAAACG 59.708 40.000 0.00 0.00 0.00 3.60
2163 3305 9.659830 CTTGTAAAACAGTAGCTTAAAACGAAT 57.340 29.630 0.00 0.00 0.00 3.34
2280 3422 9.118236 CGTTTCTAAAAGATTTGGAAAGATGAC 57.882 33.333 12.66 3.72 0.00 3.06
2328 3470 4.119862 CAACAACGAAGACTCTCTTTCCA 58.880 43.478 0.00 0.00 36.73 3.53
2447 3589 3.715628 AGTTTTAGTGCAAGCAAGTGG 57.284 42.857 0.00 0.00 0.00 4.00
2448 3590 7.649306 AGAATTAAGTTTTAGTGCAAGCAAGTG 59.351 33.333 0.00 0.00 0.00 3.16
2590 3732 8.109634 ACTTATGTGGAGAAAATTATCACCAGT 58.890 33.333 0.00 0.00 40.14 4.00
2751 3893 1.380785 ATGCAGCCTGTGAATGGGG 60.381 57.895 0.00 0.00 0.00 4.96
2769 3911 8.355169 GGTAAATACGATACAAGTCAGGTATCA 58.645 37.037 11.69 0.00 44.64 2.15
2792 3934 8.570038 TTATATGTGAATTAGGGGTGAAGGTA 57.430 34.615 0.00 0.00 0.00 3.08
2989 4135 7.484975 AGTCTTCATACAGCACAGTAGAATAC 58.515 38.462 0.00 0.00 43.47 1.89
2994 4140 4.795795 CGAAGTCTTCATACAGCACAGTAG 59.204 45.833 12.99 0.00 0.00 2.57
3066 4212 8.409358 AATAAATTAGTTTGAAGCCTCACTGT 57.591 30.769 0.00 0.00 0.00 3.55
3087 4233 8.871629 TCACAGTTGGAAAGCCTAATAAATAA 57.128 30.769 0.00 0.00 34.31 1.40
3175 4321 9.194271 GGAAAGGATGATAACTAACTATCGTTC 57.806 37.037 0.00 0.00 34.59 3.95
3180 4326 8.798975 TCAGGGAAAGGATGATAACTAACTAT 57.201 34.615 0.00 0.00 0.00 2.12
3200 4346 1.004277 TCCCGAAACCTTGAATCAGGG 59.996 52.381 10.06 10.06 38.42 4.45
3327 4473 2.433662 AGGAACGGAGGGAGTAGTAC 57.566 55.000 0.00 0.00 0.00 2.73
3333 4479 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3334 4480 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3335 4481 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3336 4482 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3337 4483 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3370 4516 9.066892 GGAGCAAAATTATGTAGTCCATATTGA 57.933 33.333 0.00 0.00 35.96 2.57
3371 4517 8.017373 CGGAGCAAAATTATGTAGTCCATATTG 58.983 37.037 0.00 0.00 35.96 1.90
3372 4518 7.719633 ACGGAGCAAAATTATGTAGTCCATATT 59.280 33.333 0.00 0.00 35.96 1.28
3373 4519 7.224297 ACGGAGCAAAATTATGTAGTCCATAT 58.776 34.615 0.00 0.00 35.96 1.78
3374 4520 6.588204 ACGGAGCAAAATTATGTAGTCCATA 58.412 36.000 0.00 0.00 34.86 2.74
3375 4521 5.437060 ACGGAGCAAAATTATGTAGTCCAT 58.563 37.500 0.00 0.00 37.58 3.41
3376 4522 4.839121 ACGGAGCAAAATTATGTAGTCCA 58.161 39.130 0.00 0.00 0.00 4.02
3377 4523 6.482308 ACATACGGAGCAAAATTATGTAGTCC 59.518 38.462 0.00 0.00 32.77 3.85
3378 4524 7.478520 ACATACGGAGCAAAATTATGTAGTC 57.521 36.000 0.00 0.00 32.77 2.59
3379 4525 8.589335 CTACATACGGAGCAAAATTATGTAGT 57.411 34.615 14.72 0.00 43.06 2.73
3381 4527 7.654520 GGACTACATACGGAGCAAAATTATGTA 59.345 37.037 0.00 0.00 35.50 2.29
3382 4528 6.482308 GGACTACATACGGAGCAAAATTATGT 59.518 38.462 0.00 0.00 37.23 2.29
3383 4529 6.481976 TGGACTACATACGGAGCAAAATTATG 59.518 38.462 0.00 0.00 0.00 1.90
3384 4530 6.588204 TGGACTACATACGGAGCAAAATTAT 58.412 36.000 0.00 0.00 0.00 1.28
3385 4531 5.979993 TGGACTACATACGGAGCAAAATTA 58.020 37.500 0.00 0.00 0.00 1.40
3386 4532 4.839121 TGGACTACATACGGAGCAAAATT 58.161 39.130 0.00 0.00 0.00 1.82
3387 4533 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3388 4534 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3389 4535 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
3390 4536 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
3391 4537 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
3392 4538 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
3393 4539 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
3394 4540 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3395 4541 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3396 4542 9.133627 CAGAGATTTCAATATGGACTACATACG 57.866 37.037 0.00 0.00 44.41 3.06
3400 4546 9.958180 TTTTCAGAGATTTCAATATGGACTACA 57.042 29.630 0.00 0.00 0.00 2.74
3403 4549 9.171877 GTCTTTTCAGAGATTTCAATATGGACT 57.828 33.333 0.00 0.00 0.00 3.85
3404 4550 9.171877 AGTCTTTTCAGAGATTTCAATATGGAC 57.828 33.333 0.00 0.00 0.00 4.02
3405 4551 9.745018 AAGTCTTTTCAGAGATTTCAATATGGA 57.255 29.630 0.00 0.00 0.00 3.41
3406 4552 9.784680 CAAGTCTTTTCAGAGATTTCAATATGG 57.215 33.333 0.00 0.00 0.00 2.74
3424 4570 9.379791 CGTTCCTATTCCTAAATACAAGTCTTT 57.620 33.333 0.00 0.00 0.00 2.52
3425 4571 7.985752 CCGTTCCTATTCCTAAATACAAGTCTT 59.014 37.037 0.00 0.00 0.00 3.01
3426 4572 7.343833 TCCGTTCCTATTCCTAAATACAAGTCT 59.656 37.037 0.00 0.00 0.00 3.24
3427 4573 7.495055 TCCGTTCCTATTCCTAAATACAAGTC 58.505 38.462 0.00 0.00 0.00 3.01
3428 4574 7.418712 CCTCCGTTCCTATTCCTAAATACAAGT 60.419 40.741 0.00 0.00 0.00 3.16
3429 4575 6.929606 CCTCCGTTCCTATTCCTAAATACAAG 59.070 42.308 0.00 0.00 0.00 3.16
3430 4576 6.183361 CCCTCCGTTCCTATTCCTAAATACAA 60.183 42.308 0.00 0.00 0.00 2.41
3431 4577 5.306160 CCCTCCGTTCCTATTCCTAAATACA 59.694 44.000 0.00 0.00 0.00 2.29
3432 4578 5.541484 TCCCTCCGTTCCTATTCCTAAATAC 59.459 44.000 0.00 0.00 0.00 1.89
3433 4579 5.719100 TCCCTCCGTTCCTATTCCTAAATA 58.281 41.667 0.00 0.00 0.00 1.40
3434 4580 4.563782 TCCCTCCGTTCCTATTCCTAAAT 58.436 43.478 0.00 0.00 0.00 1.40
3435 4581 3.965347 CTCCCTCCGTTCCTATTCCTAAA 59.035 47.826 0.00 0.00 0.00 1.85
3436 4582 3.052338 ACTCCCTCCGTTCCTATTCCTAA 60.052 47.826 0.00 0.00 0.00 2.69
3437 4583 2.517127 ACTCCCTCCGTTCCTATTCCTA 59.483 50.000 0.00 0.00 0.00 2.94
3438 4584 1.291335 ACTCCCTCCGTTCCTATTCCT 59.709 52.381 0.00 0.00 0.00 3.36
3439 4585 1.790818 ACTCCCTCCGTTCCTATTCC 58.209 55.000 0.00 0.00 0.00 3.01
3440 4586 2.296752 GCTACTCCCTCCGTTCCTATTC 59.703 54.545 0.00 0.00 0.00 1.75
3441 4587 2.317973 GCTACTCCCTCCGTTCCTATT 58.682 52.381 0.00 0.00 0.00 1.73
3442 4588 1.480869 GGCTACTCCCTCCGTTCCTAT 60.481 57.143 0.00 0.00 0.00 2.57
3443 4589 0.106318 GGCTACTCCCTCCGTTCCTA 60.106 60.000 0.00 0.00 0.00 2.94
3444 4590 1.381463 GGCTACTCCCTCCGTTCCT 60.381 63.158 0.00 0.00 0.00 3.36
3445 4591 3.218227 GGCTACTCCCTCCGTTCC 58.782 66.667 0.00 0.00 0.00 3.62
3454 4600 5.477637 AGAATAGAATAAGTCGGGCTACTCC 59.522 44.000 0.00 0.00 0.00 3.85
3455 4601 6.578163 AGAATAGAATAAGTCGGGCTACTC 57.422 41.667 0.00 0.00 0.00 2.59
3456 4602 6.550108 TCAAGAATAGAATAAGTCGGGCTACT 59.450 38.462 0.00 0.00 0.00 2.57
3461 4607 8.893727 ACAAAATCAAGAATAGAATAAGTCGGG 58.106 33.333 0.00 0.00 0.00 5.14
3568 4729 7.201609 GCTTTCAAAATCTACACATCGGATACA 60.202 37.037 0.00 0.00 0.00 2.29
3597 4758 7.620880 TCAGTAGCTACAAAAACTGATATGGT 58.379 34.615 25.28 0.00 42.46 3.55
4259 5429 8.487176 GTTGTTGCTTGGAAAATGTTACATAAG 58.513 33.333 0.00 0.00 0.00 1.73
4469 5643 5.298989 TCCTGAAGCAAGTTTAGTAACCA 57.701 39.130 0.00 0.00 34.71 3.67
4508 5699 7.044966 GCGTGCATGTATACTTGTATTCAAAAC 60.045 37.037 17.33 2.36 32.87 2.43
4754 5952 6.460781 ACATGATGAAATGCACATTCAAAGT 58.539 32.000 17.72 11.93 0.00 2.66
4758 5956 5.907866 AGACATGATGAAATGCACATTCA 57.092 34.783 16.52 16.52 0.00 2.57
4795 5993 4.423625 ACCATAGGTAAGGTCAGATTGC 57.576 45.455 0.00 0.00 32.11 3.56
4799 5997 7.391620 CAAGTAAAACCATAGGTAAGGTCAGA 58.608 38.462 0.00 0.00 37.07 3.27
4841 6044 7.453393 ACTGAGGAATGATACTGAACAAAGAA 58.547 34.615 0.00 0.00 0.00 2.52
4843 6046 8.777865 TTACTGAGGAATGATACTGAACAAAG 57.222 34.615 0.00 0.00 0.00 2.77
4925 6129 2.058798 CACTGCAGCAGCTTTCATTTG 58.941 47.619 23.05 6.65 42.74 2.32
4929 6133 0.879090 CATCACTGCAGCAGCTTTCA 59.121 50.000 23.05 2.06 42.74 2.69
4930 6134 1.135746 GTCATCACTGCAGCAGCTTTC 60.136 52.381 23.05 4.88 42.74 2.62
4941 6145 2.568956 TCTCCTTTCCAGGTCATCACTG 59.431 50.000 0.00 0.00 41.69 3.66
4968 6172 4.766891 CCAGTTGCTAATTCTTCCTTGGAA 59.233 41.667 1.86 1.86 0.00 3.53
5040 6244 3.455910 TCCAATGATCAAGATTCCTCCGT 59.544 43.478 0.00 0.00 0.00 4.69
5112 6316 2.558359 AGTTTTCATACCTTGTGCTGCC 59.442 45.455 0.00 0.00 0.00 4.85
5146 6350 9.646427 GTTCTTCTTGTTAGACATAGACTTGAT 57.354 33.333 0.00 0.00 0.00 2.57
5155 6359 8.507249 GTTATGCTTGTTCTTCTTGTTAGACAT 58.493 33.333 0.00 0.00 0.00 3.06
5169 6373 6.457528 GCTGTGAGGATAAGTTATGCTTGTTC 60.458 42.308 16.95 6.43 36.95 3.18
5273 6498 8.954950 TGTATCTACTGAACTAGGTACTGTAC 57.045 38.462 9.46 9.46 41.52 2.90
5301 6526 9.136323 GGAGAACATAATTCATCCATTTTAGGT 57.864 33.333 0.00 0.00 0.00 3.08
5307 6532 9.258629 TCTTTTGGAGAACATAATTCATCCATT 57.741 29.630 0.00 0.00 36.75 3.16
5368 6593 3.300388 AGTTATCCGGATCTTCAGCTGA 58.700 45.455 23.08 13.74 0.00 4.26
5390 6618 9.591792 CAGTTGAAAGTGAAGATGATATGTCTA 57.408 33.333 0.00 0.00 0.00 2.59
5392 6620 8.484641 TCAGTTGAAAGTGAAGATGATATGTC 57.515 34.615 0.00 0.00 35.53 3.06
5544 6772 2.802816 GGCACAGACATAGAATAAGCGG 59.197 50.000 0.00 0.00 0.00 5.52
5661 6889 2.171237 TGATGAAGGTCCCTGCATACAG 59.829 50.000 6.80 0.00 42.11 2.74
5806 7064 7.275888 ACAAAAGCATCAACACATTCTTAGA 57.724 32.000 0.00 0.00 0.00 2.10
5855 7113 6.503560 TCTGGGGACTAAAACAGAAGTTAA 57.496 37.500 0.00 0.00 37.06 2.01
5906 7164 1.759994 GATACATCAGACTCACGCGG 58.240 55.000 12.47 0.00 0.00 6.46
6016 7274 4.925836 ACCGGGTACAAAAACCATCTAAT 58.074 39.130 6.32 0.00 41.67 1.73
6022 7280 1.202867 GGGTACCGGGTACAAAAACCA 60.203 52.381 32.17 0.00 40.41 3.67
6023 7281 1.533625 GGGTACCGGGTACAAAAACC 58.466 55.000 32.17 21.95 40.41 3.27
6111 7374 1.502231 CACCCAACAACAGAGAGTCG 58.498 55.000 0.00 0.00 0.00 4.18
6158 7421 5.516339 CAGAATTCAACAAACAGAACCACAC 59.484 40.000 8.44 0.00 0.00 3.82
6251 7518 5.885449 TTGGGTTCAGTTGATTTTTCCAT 57.115 34.783 0.00 0.00 0.00 3.41
6292 7561 9.207042 GCATAACTTATTTTTAAGTAGTCACGC 57.793 33.333 0.00 0.00 39.18 5.34
6355 7636 7.076842 AGATGCACAACAACATGACTATTAC 57.923 36.000 0.00 0.00 0.00 1.89
6356 7637 8.962884 ATAGATGCACAACAACATGACTATTA 57.037 30.769 0.00 0.00 0.00 0.98
6357 7638 7.870509 ATAGATGCACAACAACATGACTATT 57.129 32.000 0.00 0.00 0.00 1.73
6380 7661 9.584008 AGATGGCACTTATTTCTTGATTGATAT 57.416 29.630 0.00 0.00 0.00 1.63
6406 7687 2.642171 ATCAGTAGACCCCCTTCACA 57.358 50.000 0.00 0.00 0.00 3.58
6407 7688 3.371965 TGTATCAGTAGACCCCCTTCAC 58.628 50.000 0.00 0.00 0.00 3.18
6434 7715 3.704800 TTGATCCATACACGTCCCAAA 57.295 42.857 0.00 0.00 0.00 3.28
6437 7718 2.169769 TCCTTTGATCCATACACGTCCC 59.830 50.000 0.00 0.00 0.00 4.46
6460 7741 9.448587 ACCTGGTGGAGATTAAGTATATACTTT 57.551 33.333 28.42 14.97 40.74 2.66
6546 7833 9.618890 TCTCTAATAAATGAACAAATCTCCCTG 57.381 33.333 0.00 0.00 0.00 4.45
6592 7879 5.185454 CAGGTGGCACTTATTACAGATGAA 58.815 41.667 18.45 0.00 0.00 2.57
6652 7939 7.554835 TGTTGGAAATGTATTACTATCCACCAC 59.445 37.037 12.38 10.53 36.73 4.16
6814 8146 2.105821 AGCACAAGTACCAGCTAACCAA 59.894 45.455 0.00 0.00 35.19 3.67
6829 8161 3.181501 GCAAACGCCAGATATTAGCACAA 60.182 43.478 0.00 0.00 0.00 3.33
6914 8248 3.127030 GGGGCAACTAGTTTCTTTCATCG 59.873 47.826 5.07 0.00 0.00 3.84
7049 8416 4.498682 GCTTCATGTAATCATCTGCCAACC 60.499 45.833 0.00 0.00 31.15 3.77
7096 8463 3.253188 CGATGCCCACAAGAAGAGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
7113 8480 3.807538 CACACAGCCAGCCGATGC 61.808 66.667 0.00 0.00 37.95 3.91
7114 8481 3.807538 GCACACAGCCAGCCGATG 61.808 66.667 0.00 0.00 37.23 3.84
7118 8485 3.121030 CTACGCACACAGCCAGCC 61.121 66.667 0.00 0.00 41.38 4.85
7119 8486 2.357517 ACTACGCACACAGCCAGC 60.358 61.111 0.00 0.00 41.38 4.85
7120 8487 0.734253 GAGACTACGCACACAGCCAG 60.734 60.000 0.00 0.00 41.38 4.85
7121 8488 1.289066 GAGACTACGCACACAGCCA 59.711 57.895 0.00 0.00 41.38 4.75
7122 8489 0.108615 ATGAGACTACGCACACAGCC 60.109 55.000 0.00 0.00 41.38 4.85
7123 8490 2.455032 CTATGAGACTACGCACACAGC 58.545 52.381 0.00 0.00 40.87 4.40
7124 8491 2.423892 ACCTATGAGACTACGCACACAG 59.576 50.000 0.00 0.00 0.00 3.66
7125 8492 2.163613 CACCTATGAGACTACGCACACA 59.836 50.000 0.00 0.00 0.00 3.72
7126 8493 2.422479 TCACCTATGAGACTACGCACAC 59.578 50.000 0.00 0.00 0.00 3.82
7127 8494 2.718563 TCACCTATGAGACTACGCACA 58.281 47.619 0.00 0.00 0.00 4.57
7128 8495 3.377485 TCTTCACCTATGAGACTACGCAC 59.623 47.826 0.00 0.00 35.83 5.34
7129 8496 3.617284 TCTTCACCTATGAGACTACGCA 58.383 45.455 0.00 0.00 35.83 5.24
7130 8497 4.634184 TTCTTCACCTATGAGACTACGC 57.366 45.455 0.00 0.00 35.83 4.42
7131 8498 5.524284 CCATTCTTCACCTATGAGACTACG 58.476 45.833 0.00 0.00 35.83 3.51
7132 8499 5.293560 GCCATTCTTCACCTATGAGACTAC 58.706 45.833 0.00 0.00 35.83 2.73
7133 8500 4.038042 CGCCATTCTTCACCTATGAGACTA 59.962 45.833 0.00 0.00 35.83 2.59
7134 8501 3.181471 CGCCATTCTTCACCTATGAGACT 60.181 47.826 0.00 0.00 35.83 3.24
7135 8502 3.126831 CGCCATTCTTCACCTATGAGAC 58.873 50.000 0.00 0.00 35.83 3.36
7136 8503 2.103094 CCGCCATTCTTCACCTATGAGA 59.897 50.000 0.00 0.00 35.83 3.27
7137 8504 2.158900 ACCGCCATTCTTCACCTATGAG 60.159 50.000 0.00 0.00 35.83 2.90
7138 8505 1.837439 ACCGCCATTCTTCACCTATGA 59.163 47.619 0.00 0.00 0.00 2.15
7139 8506 1.942657 CACCGCCATTCTTCACCTATG 59.057 52.381 0.00 0.00 0.00 2.23
7140 8507 1.837439 TCACCGCCATTCTTCACCTAT 59.163 47.619 0.00 0.00 0.00 2.57
7141 8508 1.066430 GTCACCGCCATTCTTCACCTA 60.066 52.381 0.00 0.00 0.00 3.08
7142 8509 0.321653 GTCACCGCCATTCTTCACCT 60.322 55.000 0.00 0.00 0.00 4.00
7143 8510 1.635663 CGTCACCGCCATTCTTCACC 61.636 60.000 0.00 0.00 0.00 4.02
7144 8511 0.669318 TCGTCACCGCCATTCTTCAC 60.669 55.000 0.00 0.00 0.00 3.18
7145 8512 0.249120 ATCGTCACCGCCATTCTTCA 59.751 50.000 0.00 0.00 0.00 3.02
7146 8513 0.931005 GATCGTCACCGCCATTCTTC 59.069 55.000 0.00 0.00 0.00 2.87
7147 8514 0.249120 TGATCGTCACCGCCATTCTT 59.751 50.000 0.00 0.00 0.00 2.52
7148 8515 0.179100 CTGATCGTCACCGCCATTCT 60.179 55.000 0.00 0.00 0.00 2.40
7149 8516 0.460284 ACTGATCGTCACCGCCATTC 60.460 55.000 0.00 0.00 0.00 2.67
7150 8517 0.036388 AACTGATCGTCACCGCCATT 60.036 50.000 0.00 0.00 0.00 3.16
7151 8518 0.740868 CAACTGATCGTCACCGCCAT 60.741 55.000 0.00 0.00 0.00 4.40
7152 8519 1.374125 CAACTGATCGTCACCGCCA 60.374 57.895 0.00 0.00 0.00 5.69
7153 8520 2.740714 GCAACTGATCGTCACCGCC 61.741 63.158 0.00 0.00 0.00 6.13
7154 8521 1.738099 AGCAACTGATCGTCACCGC 60.738 57.895 0.00 0.00 0.00 5.68
7155 8522 1.959899 GCAGCAACTGATCGTCACCG 61.960 60.000 0.00 0.00 32.44 4.94
7156 8523 0.671781 AGCAGCAACTGATCGTCACC 60.672 55.000 0.00 0.00 32.44 4.02
7157 8524 0.718343 GAGCAGCAACTGATCGTCAC 59.282 55.000 0.00 0.00 37.16 3.67
7158 8525 3.128259 GAGCAGCAACTGATCGTCA 57.872 52.632 0.00 0.00 37.16 4.35
7162 8529 1.078848 ACCCGAGCAGCAACTGATC 60.079 57.895 2.82 2.82 42.60 2.92
7163 8530 1.376424 CACCCGAGCAGCAACTGAT 60.376 57.895 0.00 0.00 32.44 2.90
7164 8531 2.031012 CACCCGAGCAGCAACTGA 59.969 61.111 0.00 0.00 32.44 3.41
7165 8532 3.730761 GCACCCGAGCAGCAACTG 61.731 66.667 0.00 0.00 34.12 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.