Multiple sequence alignment - TraesCS5D01G333000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G333000 chr5D 100.000 3266 0 0 1 3266 423369789 423373054 0.000000e+00 6032.0
1 TraesCS5D01G333000 chr5D 84.555 1651 202 33 1021 2645 423317631 423319254 0.000000e+00 1587.0
2 TraesCS5D01G333000 chr5D 80.873 1971 265 66 876 2795 423322432 423324341 0.000000e+00 1448.0
3 TraesCS5D01G333000 chr5D 82.339 1642 236 35 1021 2645 423228960 423227356 0.000000e+00 1376.0
4 TraesCS5D01G333000 chr5D 82.810 669 84 21 840 1488 423349398 423350055 1.310000e-158 569.0
5 TraesCS5D01G333000 chr5D 81.102 381 46 13 2646 3016 423356586 423356950 6.900000e-72 281.0
6 TraesCS5D01G333000 chr5D 84.459 148 15 2 2877 3016 423351185 423351332 4.390000e-29 139.0
7 TraesCS5D01G333000 chr5D 74.453 274 40 17 2668 2937 423224246 423223999 1.250000e-14 91.6
8 TraesCS5D01G333000 chr5D 88.333 60 7 0 2668 2727 423225134 423225075 4.520000e-09 73.1
9 TraesCS5D01G333000 chr5B 93.806 2341 94 26 741 3052 511071868 511074186 0.000000e+00 3472.0
10 TraesCS5D01G333000 chr5B 84.882 1647 203 29 1020 2645 511026674 511028295 0.000000e+00 1620.0
11 TraesCS5D01G333000 chr5B 82.471 1894 228 59 807 2645 511063885 511065729 0.000000e+00 1563.0
12 TraesCS5D01G333000 chr5B 84.303 1650 204 35 1021 2645 510887354 510888973 0.000000e+00 1561.0
13 TraesCS5D01G333000 chr5B 82.302 1260 208 9 1049 2301 510727685 510726434 0.000000e+00 1077.0
14 TraesCS5D01G333000 chr5B 87.027 185 21 2 2314 2498 511057517 511057698 4.270000e-49 206.0
15 TraesCS5D01G333000 chr5B 82.969 229 27 7 3050 3266 511074215 511074443 2.570000e-46 196.0
16 TraesCS5D01G333000 chr5A 93.028 2381 102 28 703 3051 536869356 536871704 0.000000e+00 3419.0
17 TraesCS5D01G333000 chr5A 81.746 2027 275 57 1020 3012 536858434 536860399 0.000000e+00 1605.0
18 TraesCS5D01G333000 chr5A 83.276 1447 189 30 1020 2457 536853142 536854544 0.000000e+00 1282.0
19 TraesCS5D01G333000 chr5A 80.958 877 135 18 1635 2499 536447620 536446764 0.000000e+00 665.0
20 TraesCS5D01G333000 chr5A 96.970 132 4 0 3135 3266 536871842 536871973 4.240000e-54 222.0
21 TraesCS5D01G333000 chr5A 95.238 105 5 0 3162 3266 536884286 536884390 2.020000e-37 167.0
22 TraesCS5D01G333000 chr4D 92.857 308 21 1 1 307 354994832 354994525 2.310000e-121 446.0
23 TraesCS5D01G333000 chr2A 93.976 83 5 0 136 218 704690434 704690352 3.420000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G333000 chr5D 423369789 423373054 3265 False 6032.000000 6032 100.000000 1 3266 1 chr5D.!!$F2 3265
1 TraesCS5D01G333000 chr5D 423317631 423324341 6710 False 1517.500000 1587 82.714000 876 2795 2 chr5D.!!$F3 1919
2 TraesCS5D01G333000 chr5D 423223999 423228960 4961 True 513.566667 1376 81.708333 1021 2937 3 chr5D.!!$R1 1916
3 TraesCS5D01G333000 chr5D 423349398 423351332 1934 False 354.000000 569 83.634500 840 3016 2 chr5D.!!$F4 2176
4 TraesCS5D01G333000 chr5B 511071868 511074443 2575 False 1834.000000 3472 88.387500 741 3266 2 chr5B.!!$F5 2525
5 TraesCS5D01G333000 chr5B 511026674 511028295 1621 False 1620.000000 1620 84.882000 1020 2645 1 chr5B.!!$F2 1625
6 TraesCS5D01G333000 chr5B 511063885 511065729 1844 False 1563.000000 1563 82.471000 807 2645 1 chr5B.!!$F4 1838
7 TraesCS5D01G333000 chr5B 510887354 510888973 1619 False 1561.000000 1561 84.303000 1021 2645 1 chr5B.!!$F1 1624
8 TraesCS5D01G333000 chr5B 510726434 510727685 1251 True 1077.000000 1077 82.302000 1049 2301 1 chr5B.!!$R1 1252
9 TraesCS5D01G333000 chr5A 536869356 536871973 2617 False 1820.500000 3419 94.999000 703 3266 2 chr5A.!!$F3 2563
10 TraesCS5D01G333000 chr5A 536853142 536860399 7257 False 1443.500000 1605 82.511000 1020 3012 2 chr5A.!!$F2 1992
11 TraesCS5D01G333000 chr5A 536446764 536447620 856 True 665.000000 665 80.958000 1635 2499 1 chr5A.!!$R1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.034059 AGCTTGACGTCACCTCCTTG 59.966 55.0 19.9 3.96 0.00 3.61 F
944 947 0.039618 ATCCTCGGCACAAACCCAAT 59.960 50.0 0.0 0.00 0.00 3.16 F
980 1000 0.108186 TTGCTCACCTACGGCATCTG 60.108 55.0 0.0 0.00 35.84 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 7150 0.104855 CGAAGCTATGCTACCAGGCA 59.895 55.0 0.0 0.0 46.63 4.75 R
1829 7183 0.790993 TAGAACACCCCACTCCTCCT 59.209 55.0 0.0 0.0 0.00 3.69 R
2304 12601 1.045407 AGGTGAACAGCCAGTACGAA 58.955 50.0 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.936535 GCGTACAGCCCTAGGACT 58.063 61.111 11.48 0.00 40.81 3.85
24 25 1.734748 GCGTACAGCCCTAGGACTC 59.265 63.158 11.48 0.00 40.81 3.36
25 26 1.736365 GCGTACAGCCCTAGGACTCC 61.736 65.000 11.48 0.00 40.81 3.85
26 27 1.445716 CGTACAGCCCTAGGACTCCG 61.446 65.000 11.48 1.99 0.00 4.63
27 28 1.455217 TACAGCCCTAGGACTCCGC 60.455 63.158 11.48 4.36 0.00 5.54
28 29 2.219449 TACAGCCCTAGGACTCCGCA 62.219 60.000 11.48 0.00 0.00 5.69
29 30 2.443016 AGCCCTAGGACTCCGCAG 60.443 66.667 11.48 0.00 0.00 5.18
30 31 2.760385 GCCCTAGGACTCCGCAGT 60.760 66.667 11.48 0.00 34.57 4.40
31 32 1.455217 GCCCTAGGACTCCGCAGTA 60.455 63.158 11.48 0.00 30.63 2.74
32 33 1.457009 GCCCTAGGACTCCGCAGTAG 61.457 65.000 11.48 0.00 30.63 2.57
33 34 0.824182 CCCTAGGACTCCGCAGTAGG 60.824 65.000 11.48 2.31 30.63 3.18
34 35 0.183014 CCTAGGACTCCGCAGTAGGA 59.817 60.000 1.05 0.00 38.80 2.94
40 41 4.434483 TCCGCAGTAGGAGCTTGA 57.566 55.556 0.00 0.00 34.92 3.02
41 42 1.890894 TCCGCAGTAGGAGCTTGAC 59.109 57.895 0.00 0.00 34.92 3.18
42 43 1.517257 CCGCAGTAGGAGCTTGACG 60.517 63.158 0.00 0.00 0.00 4.35
43 44 1.213013 CGCAGTAGGAGCTTGACGT 59.787 57.895 0.00 0.00 0.00 4.34
44 45 0.798771 CGCAGTAGGAGCTTGACGTC 60.799 60.000 9.11 9.11 0.00 4.34
45 46 0.243907 GCAGTAGGAGCTTGACGTCA 59.756 55.000 15.76 15.76 0.00 4.35
46 47 1.983972 CAGTAGGAGCTTGACGTCAC 58.016 55.000 19.90 8.02 0.00 3.67
47 48 0.889306 AGTAGGAGCTTGACGTCACC 59.111 55.000 19.90 16.21 0.00 4.02
48 49 0.889306 GTAGGAGCTTGACGTCACCT 59.111 55.000 23.97 23.97 0.00 4.00
49 50 1.135344 GTAGGAGCTTGACGTCACCTC 60.135 57.143 24.16 25.19 0.00 3.85
50 51 1.079750 GGAGCTTGACGTCACCTCC 60.080 63.158 32.28 32.28 37.42 4.30
51 52 1.536943 GGAGCTTGACGTCACCTCCT 61.537 60.000 35.24 23.13 39.58 3.69
52 53 0.318762 GAGCTTGACGTCACCTCCTT 59.681 55.000 24.63 8.45 0.00 3.36
53 54 0.034059 AGCTTGACGTCACCTCCTTG 59.966 55.000 19.90 3.96 0.00 3.61
54 55 0.951040 GCTTGACGTCACCTCCTTGG 60.951 60.000 19.90 2.59 42.93 3.61
63 64 3.335711 CCTCCTTGGTCCCCCATC 58.664 66.667 0.00 0.00 41.49 3.51
64 65 2.386935 CCTCCTTGGTCCCCCATCC 61.387 68.421 0.00 0.00 41.49 3.51
65 66 1.308216 CTCCTTGGTCCCCCATCCT 60.308 63.158 0.00 0.00 41.49 3.24
66 67 1.619363 TCCTTGGTCCCCCATCCTG 60.619 63.158 0.00 0.00 41.49 3.86
67 68 1.930656 CCTTGGTCCCCCATCCTGT 60.931 63.158 0.00 0.00 41.49 4.00
68 69 1.304282 CTTGGTCCCCCATCCTGTG 59.696 63.158 0.00 0.00 41.49 3.66
69 70 2.843912 CTTGGTCCCCCATCCTGTGC 62.844 65.000 0.00 0.00 41.49 4.57
70 71 4.489771 GGTCCCCCATCCTGTGCG 62.490 72.222 0.00 0.00 0.00 5.34
73 74 3.479203 CCCCCATCCTGTGCGCTA 61.479 66.667 9.73 0.00 0.00 4.26
74 75 2.822637 CCCCCATCCTGTGCGCTAT 61.823 63.158 9.73 0.00 0.00 2.97
75 76 1.302033 CCCCATCCTGTGCGCTATC 60.302 63.158 9.73 0.00 0.00 2.08
76 77 1.302033 CCCATCCTGTGCGCTATCC 60.302 63.158 9.73 0.00 0.00 2.59
77 78 1.447217 CCATCCTGTGCGCTATCCA 59.553 57.895 9.73 0.00 0.00 3.41
78 79 0.882042 CCATCCTGTGCGCTATCCAC 60.882 60.000 9.73 0.00 0.00 4.02
79 80 1.068083 ATCCTGTGCGCTATCCACG 59.932 57.895 9.73 0.00 36.01 4.94
80 81 1.391933 ATCCTGTGCGCTATCCACGA 61.392 55.000 9.73 0.37 36.01 4.35
81 82 1.878522 CCTGTGCGCTATCCACGAC 60.879 63.158 9.73 0.00 36.01 4.34
82 83 1.153842 CTGTGCGCTATCCACGACA 60.154 57.895 9.73 0.07 36.01 4.35
83 84 1.413767 CTGTGCGCTATCCACGACAC 61.414 60.000 9.73 0.00 37.75 3.67
84 85 2.165301 GTGCGCTATCCACGACACC 61.165 63.158 9.73 0.00 34.06 4.16
85 86 2.348104 TGCGCTATCCACGACACCT 61.348 57.895 9.73 0.00 0.00 4.00
86 87 1.153628 GCGCTATCCACGACACCTT 60.154 57.895 0.00 0.00 0.00 3.50
87 88 1.421410 GCGCTATCCACGACACCTTG 61.421 60.000 0.00 0.00 0.00 3.61
88 89 0.172578 CGCTATCCACGACACCTTGA 59.827 55.000 0.00 0.00 0.00 3.02
89 90 1.403647 CGCTATCCACGACACCTTGAA 60.404 52.381 0.00 0.00 0.00 2.69
90 91 2.000447 GCTATCCACGACACCTTGAAC 59.000 52.381 0.00 0.00 0.00 3.18
91 92 2.353803 GCTATCCACGACACCTTGAACT 60.354 50.000 0.00 0.00 0.00 3.01
92 93 2.169832 ATCCACGACACCTTGAACTG 57.830 50.000 0.00 0.00 0.00 3.16
93 94 0.105964 TCCACGACACCTTGAACTGG 59.894 55.000 0.00 0.00 0.00 4.00
94 95 0.105964 CCACGACACCTTGAACTGGA 59.894 55.000 0.00 0.00 0.00 3.86
95 96 1.474320 CCACGACACCTTGAACTGGAA 60.474 52.381 0.00 0.00 0.00 3.53
96 97 2.285083 CACGACACCTTGAACTGGAAA 58.715 47.619 0.00 0.00 0.00 3.13
97 98 2.031683 CACGACACCTTGAACTGGAAAC 59.968 50.000 0.00 0.00 0.00 2.78
98 99 2.285083 CGACACCTTGAACTGGAAACA 58.715 47.619 0.00 0.00 39.59 2.83
99 100 2.031683 CGACACCTTGAACTGGAAACAC 59.968 50.000 0.00 0.00 35.60 3.32
100 101 2.014128 ACACCTTGAACTGGAAACACG 58.986 47.619 0.00 0.00 35.60 4.49
101 102 1.021968 ACCTTGAACTGGAAACACGC 58.978 50.000 0.00 0.00 35.60 5.34
102 103 0.310854 CCTTGAACTGGAAACACGCC 59.689 55.000 0.00 0.00 35.60 5.68
103 104 0.310854 CTTGAACTGGAAACACGCCC 59.689 55.000 0.00 0.00 35.60 6.13
104 105 0.106918 TTGAACTGGAAACACGCCCT 60.107 50.000 0.00 0.00 35.60 5.19
105 106 0.817634 TGAACTGGAAACACGCCCTG 60.818 55.000 0.00 0.00 35.60 4.45
106 107 1.515521 GAACTGGAAACACGCCCTGG 61.516 60.000 0.00 0.00 35.60 4.45
107 108 3.365265 CTGGAAACACGCCCTGGC 61.365 66.667 0.00 0.00 35.60 4.85
108 109 4.966787 TGGAAACACGCCCTGGCC 62.967 66.667 1.86 0.00 34.14 5.36
118 119 4.738998 CCCTGGCCGCATGAACCA 62.739 66.667 0.00 0.00 0.00 3.67
119 120 2.676121 CCTGGCCGCATGAACCAA 60.676 61.111 0.00 0.00 31.81 3.67
120 121 2.274645 CCTGGCCGCATGAACCAAA 61.275 57.895 0.00 0.00 31.81 3.28
121 122 1.213537 CTGGCCGCATGAACCAAAG 59.786 57.895 0.00 0.00 31.81 2.77
122 123 1.526575 CTGGCCGCATGAACCAAAGT 61.527 55.000 0.00 0.00 31.81 2.66
123 124 1.212751 GGCCGCATGAACCAAAGTC 59.787 57.895 0.00 0.00 0.00 3.01
124 125 1.154225 GCCGCATGAACCAAAGTCG 60.154 57.895 0.00 0.00 0.00 4.18
125 126 1.573829 GCCGCATGAACCAAAGTCGA 61.574 55.000 0.00 0.00 0.00 4.20
126 127 0.871722 CCGCATGAACCAAAGTCGAA 59.128 50.000 0.00 0.00 0.00 3.71
127 128 1.468520 CCGCATGAACCAAAGTCGAAT 59.531 47.619 0.00 0.00 0.00 3.34
128 129 2.476185 CCGCATGAACCAAAGTCGAATC 60.476 50.000 0.00 0.00 0.00 2.52
129 130 2.159430 CGCATGAACCAAAGTCGAATCA 59.841 45.455 0.00 0.00 0.00 2.57
130 131 3.364864 CGCATGAACCAAAGTCGAATCAA 60.365 43.478 0.00 0.00 0.00 2.57
131 132 4.545610 GCATGAACCAAAGTCGAATCAAA 58.454 39.130 0.00 0.00 0.00 2.69
132 133 5.163513 GCATGAACCAAAGTCGAATCAAAT 58.836 37.500 0.00 0.00 0.00 2.32
133 134 5.634859 GCATGAACCAAAGTCGAATCAAATT 59.365 36.000 0.00 0.00 0.00 1.82
134 135 6.806249 GCATGAACCAAAGTCGAATCAAATTA 59.194 34.615 0.00 0.00 0.00 1.40
135 136 7.328249 GCATGAACCAAAGTCGAATCAAATTAA 59.672 33.333 0.00 0.00 0.00 1.40
136 137 9.190858 CATGAACCAAAGTCGAATCAAATTAAA 57.809 29.630 0.00 0.00 0.00 1.52
137 138 9.757227 ATGAACCAAAGTCGAATCAAATTAAAA 57.243 25.926 0.00 0.00 0.00 1.52
138 139 9.757227 TGAACCAAAGTCGAATCAAATTAAAAT 57.243 25.926 0.00 0.00 0.00 1.82
140 141 8.447787 ACCAAAGTCGAATCAAATTAAAATCG 57.552 30.769 0.00 0.00 0.00 3.34
141 142 8.079809 ACCAAAGTCGAATCAAATTAAAATCGT 58.920 29.630 0.00 0.00 0.00 3.73
142 143 8.365210 CCAAAGTCGAATCAAATTAAAATCGTG 58.635 33.333 0.00 0.00 0.00 4.35
143 144 8.901748 CAAAGTCGAATCAAATTAAAATCGTGT 58.098 29.630 0.00 0.00 0.00 4.49
144 145 8.655378 AAGTCGAATCAAATTAAAATCGTGTC 57.345 30.769 0.00 0.00 0.00 3.67
145 146 8.029642 AGTCGAATCAAATTAAAATCGTGTCT 57.970 30.769 0.00 0.00 0.00 3.41
146 147 8.504005 AGTCGAATCAAATTAAAATCGTGTCTT 58.496 29.630 0.00 0.00 0.00 3.01
147 148 8.776802 GTCGAATCAAATTAAAATCGTGTCTTC 58.223 33.333 0.00 0.00 0.00 2.87
148 149 8.717821 TCGAATCAAATTAAAATCGTGTCTTCT 58.282 29.630 0.00 0.00 0.00 2.85
149 150 9.329913 CGAATCAAATTAAAATCGTGTCTTCTT 57.670 29.630 0.00 0.00 0.00 2.52
151 152 9.626045 AATCAAATTAAAATCGTGTCTTCTTCC 57.374 29.630 0.00 0.00 0.00 3.46
152 153 8.391075 TCAAATTAAAATCGTGTCTTCTTCCT 57.609 30.769 0.00 0.00 0.00 3.36
153 154 8.504005 TCAAATTAAAATCGTGTCTTCTTCCTC 58.496 33.333 0.00 0.00 0.00 3.71
154 155 6.986904 ATTAAAATCGTGTCTTCTTCCTCC 57.013 37.500 0.00 0.00 0.00 4.30
155 156 4.351874 AAAATCGTGTCTTCTTCCTCCA 57.648 40.909 0.00 0.00 0.00 3.86
156 157 4.351874 AAATCGTGTCTTCTTCCTCCAA 57.648 40.909 0.00 0.00 0.00 3.53
157 158 3.601443 ATCGTGTCTTCTTCCTCCAAG 57.399 47.619 0.00 0.00 0.00 3.61
158 159 2.594131 TCGTGTCTTCTTCCTCCAAGA 58.406 47.619 0.00 0.00 39.56 3.02
159 160 3.165875 TCGTGTCTTCTTCCTCCAAGAT 58.834 45.455 0.00 0.00 41.02 2.40
160 161 3.193691 TCGTGTCTTCTTCCTCCAAGATC 59.806 47.826 0.00 0.00 41.02 2.75
161 162 3.516615 GTGTCTTCTTCCTCCAAGATCG 58.483 50.000 0.00 0.00 41.02 3.69
162 163 2.093973 TGTCTTCTTCCTCCAAGATCGC 60.094 50.000 0.00 0.00 41.02 4.58
163 164 2.093973 GTCTTCTTCCTCCAAGATCGCA 60.094 50.000 0.00 0.00 41.02 5.10
164 165 2.768527 TCTTCTTCCTCCAAGATCGCAT 59.231 45.455 0.00 0.00 41.02 4.73
165 166 2.898729 TCTTCCTCCAAGATCGCATC 57.101 50.000 0.00 0.00 36.08 3.91
166 167 2.110578 TCTTCCTCCAAGATCGCATCA 58.889 47.619 0.00 0.00 36.08 3.07
167 168 2.102084 TCTTCCTCCAAGATCGCATCAG 59.898 50.000 0.00 0.00 36.08 2.90
168 169 1.780503 TCCTCCAAGATCGCATCAGA 58.219 50.000 0.00 0.00 0.00 3.27
169 170 1.410517 TCCTCCAAGATCGCATCAGAC 59.589 52.381 0.00 0.00 0.00 3.51
170 171 1.137675 CCTCCAAGATCGCATCAGACA 59.862 52.381 0.00 0.00 0.00 3.41
171 172 2.471818 CTCCAAGATCGCATCAGACAG 58.528 52.381 0.00 0.00 0.00 3.51
172 173 1.137675 TCCAAGATCGCATCAGACAGG 59.862 52.381 0.00 0.00 0.00 4.00
173 174 0.935898 CAAGATCGCATCAGACAGGC 59.064 55.000 0.00 0.00 0.00 4.85
174 175 0.538584 AAGATCGCATCAGACAGGCA 59.461 50.000 0.00 0.00 0.00 4.75
175 176 0.538584 AGATCGCATCAGACAGGCAA 59.461 50.000 0.00 0.00 0.00 4.52
176 177 0.935898 GATCGCATCAGACAGGCAAG 59.064 55.000 0.00 0.00 0.00 4.01
177 178 1.094073 ATCGCATCAGACAGGCAAGC 61.094 55.000 0.00 0.00 0.00 4.01
178 179 2.789917 GCATCAGACAGGCAAGCG 59.210 61.111 0.00 0.00 0.00 4.68
179 180 2.758089 GCATCAGACAGGCAAGCGG 61.758 63.158 0.00 0.00 0.00 5.52
180 181 1.078918 CATCAGACAGGCAAGCGGA 60.079 57.895 0.00 0.00 0.00 5.54
181 182 1.078848 ATCAGACAGGCAAGCGGAC 60.079 57.895 0.00 0.00 0.00 4.79
182 183 2.842394 ATCAGACAGGCAAGCGGACG 62.842 60.000 0.00 0.00 0.00 4.79
183 184 3.303135 AGACAGGCAAGCGGACGA 61.303 61.111 0.00 0.00 0.00 4.20
184 185 2.357034 GACAGGCAAGCGGACGAA 60.357 61.111 0.00 0.00 0.00 3.85
185 186 2.665185 ACAGGCAAGCGGACGAAC 60.665 61.111 0.00 0.00 0.00 3.95
186 187 3.423154 CAGGCAAGCGGACGAACC 61.423 66.667 0.00 0.00 0.00 3.62
187 188 3.626924 AGGCAAGCGGACGAACCT 61.627 61.111 0.00 0.00 36.31 3.50
188 189 3.119096 GGCAAGCGGACGAACCTC 61.119 66.667 0.00 0.00 36.31 3.85
189 190 2.357034 GCAAGCGGACGAACCTCA 60.357 61.111 0.00 0.00 36.31 3.86
190 191 1.741770 GCAAGCGGACGAACCTCAT 60.742 57.895 0.00 0.00 36.31 2.90
191 192 0.459585 GCAAGCGGACGAACCTCATA 60.460 55.000 0.00 0.00 36.31 2.15
192 193 1.560923 CAAGCGGACGAACCTCATAG 58.439 55.000 0.00 0.00 36.31 2.23
193 194 0.179108 AAGCGGACGAACCTCATAGC 60.179 55.000 0.00 0.00 36.31 2.97
194 195 1.944676 GCGGACGAACCTCATAGCG 60.945 63.158 0.00 0.00 36.31 4.26
195 196 1.944676 CGGACGAACCTCATAGCGC 60.945 63.158 0.00 0.00 36.31 5.92
196 197 1.591863 GGACGAACCTCATAGCGCC 60.592 63.158 2.29 0.00 35.41 6.53
197 198 1.944676 GACGAACCTCATAGCGCCG 60.945 63.158 2.29 0.00 0.00 6.46
198 199 2.332362 GACGAACCTCATAGCGCCGA 62.332 60.000 2.29 0.00 0.00 5.54
199 200 1.226859 CGAACCTCATAGCGCCGAA 60.227 57.895 2.29 0.00 0.00 4.30
200 201 1.209275 CGAACCTCATAGCGCCGAAG 61.209 60.000 2.29 0.00 0.00 3.79
201 202 1.491505 GAACCTCATAGCGCCGAAGC 61.492 60.000 2.29 0.00 37.41 3.86
202 203 2.106938 CCTCATAGCGCCGAAGCA 59.893 61.111 2.29 0.00 39.83 3.91
203 204 1.953138 CCTCATAGCGCCGAAGCAG 60.953 63.158 2.29 0.00 39.83 4.24
204 205 1.066422 CTCATAGCGCCGAAGCAGA 59.934 57.895 2.29 0.00 39.83 4.26
205 206 1.211818 CTCATAGCGCCGAAGCAGAC 61.212 60.000 2.29 0.00 39.83 3.51
206 207 2.278857 ATAGCGCCGAAGCAGACG 60.279 61.111 2.29 0.00 39.83 4.18
207 208 2.771639 ATAGCGCCGAAGCAGACGA 61.772 57.895 2.29 0.00 39.83 4.20
208 209 2.938539 ATAGCGCCGAAGCAGACGAC 62.939 60.000 2.29 0.00 39.83 4.34
210 211 2.507102 CGCCGAAGCAGACGACAT 60.507 61.111 0.00 0.00 39.83 3.06
211 212 2.792290 CGCCGAAGCAGACGACATG 61.792 63.158 0.00 0.00 39.83 3.21
212 213 2.456119 GCCGAAGCAGACGACATGG 61.456 63.158 0.00 0.00 39.53 3.66
213 214 1.079819 CCGAAGCAGACGACATGGT 60.080 57.895 0.00 0.00 0.00 3.55
214 215 1.354337 CCGAAGCAGACGACATGGTG 61.354 60.000 0.00 0.00 0.00 4.17
215 216 1.354337 CGAAGCAGACGACATGGTGG 61.354 60.000 0.00 0.00 0.00 4.61
216 217 1.003355 AAGCAGACGACATGGTGGG 60.003 57.895 0.00 0.00 0.00 4.61
217 218 1.480212 AAGCAGACGACATGGTGGGA 61.480 55.000 0.00 0.00 0.00 4.37
218 219 1.448540 GCAGACGACATGGTGGGAG 60.449 63.158 0.00 0.00 0.00 4.30
219 220 1.219124 CAGACGACATGGTGGGAGG 59.781 63.158 0.00 0.00 0.00 4.30
220 221 2.125106 GACGACATGGTGGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
221 222 2.927856 ACGACATGGTGGGAGGCA 60.928 61.111 0.00 0.00 0.00 4.75
222 223 2.124983 CGACATGGTGGGAGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
223 224 2.273449 GACATGGTGGGAGGCAGG 59.727 66.667 0.00 0.00 0.00 4.85
224 225 4.052518 ACATGGTGGGAGGCAGGC 62.053 66.667 0.00 0.00 0.00 4.85
225 226 3.736224 CATGGTGGGAGGCAGGCT 61.736 66.667 0.00 0.00 0.00 4.58
226 227 3.736224 ATGGTGGGAGGCAGGCTG 61.736 66.667 10.94 10.94 0.00 4.85
236 237 3.741476 GCAGGCTGGGCGAAGTTG 61.741 66.667 17.64 0.00 0.00 3.16
237 238 3.058160 CAGGCTGGGCGAAGTTGG 61.058 66.667 6.61 0.00 0.00 3.77
241 242 3.423154 CTGGGCGAAGTTGGCGAC 61.423 66.667 3.64 0.00 35.64 5.19
244 245 3.774702 GGCGAAGTTGGCGACGTC 61.775 66.667 5.18 5.18 33.98 4.34
245 246 2.733593 GCGAAGTTGGCGACGTCT 60.734 61.111 14.70 0.00 35.00 4.18
246 247 1.443194 GCGAAGTTGGCGACGTCTA 60.443 57.895 14.70 0.00 35.00 2.59
247 248 1.671880 GCGAAGTTGGCGACGTCTAC 61.672 60.000 14.70 5.90 35.00 2.59
248 249 1.393597 CGAAGTTGGCGACGTCTACG 61.394 60.000 14.70 1.88 46.33 3.51
249 250 1.069378 GAAGTTGGCGACGTCTACGG 61.069 60.000 14.70 0.00 44.95 4.02
250 251 2.482296 AAGTTGGCGACGTCTACGGG 62.482 60.000 14.70 0.00 44.95 5.28
251 252 3.751246 TTGGCGACGTCTACGGGG 61.751 66.667 14.70 0.00 44.95 5.73
256 257 3.525545 GACGTCTACGGGGCCCTC 61.526 72.222 24.38 11.27 44.95 4.30
259 260 3.525545 GTCTACGGGGCCCTCGTC 61.526 72.222 32.86 19.74 41.38 4.20
272 273 4.063967 TCGTCGCCGAGGCAATGT 62.064 61.111 15.03 0.00 42.06 2.71
273 274 3.554692 CGTCGCCGAGGCAATGTC 61.555 66.667 15.03 0.00 42.06 3.06
274 275 3.195698 GTCGCCGAGGCAATGTCC 61.196 66.667 15.03 0.00 42.06 4.02
275 276 3.700970 TCGCCGAGGCAATGTCCA 61.701 61.111 15.03 0.00 42.06 4.02
276 277 3.197790 CGCCGAGGCAATGTCCAG 61.198 66.667 15.03 0.00 42.06 3.86
277 278 3.512516 GCCGAGGCAATGTCCAGC 61.513 66.667 9.58 0.00 41.49 4.85
283 284 3.818787 GCAATGTCCAGCCGGCTG 61.819 66.667 43.23 43.23 43.26 4.85
302 303 2.184322 GCGAAGTCGGCATCCAGA 59.816 61.111 2.47 0.00 40.23 3.86
303 304 1.447838 GCGAAGTCGGCATCCAGAA 60.448 57.895 2.47 0.00 40.23 3.02
304 305 1.019278 GCGAAGTCGGCATCCAGAAA 61.019 55.000 2.47 0.00 40.23 2.52
305 306 1.002366 CGAAGTCGGCATCCAGAAAG 58.998 55.000 0.00 0.00 35.37 2.62
306 307 1.404181 CGAAGTCGGCATCCAGAAAGA 60.404 52.381 0.00 0.00 35.37 2.52
307 308 2.699954 GAAGTCGGCATCCAGAAAGAA 58.300 47.619 0.00 0.00 0.00 2.52
308 309 2.100605 AGTCGGCATCCAGAAAGAAC 57.899 50.000 0.00 0.00 0.00 3.01
309 310 1.347707 AGTCGGCATCCAGAAAGAACA 59.652 47.619 0.00 0.00 0.00 3.18
310 311 2.151202 GTCGGCATCCAGAAAGAACAA 58.849 47.619 0.00 0.00 0.00 2.83
311 312 2.552315 GTCGGCATCCAGAAAGAACAAA 59.448 45.455 0.00 0.00 0.00 2.83
312 313 3.191371 GTCGGCATCCAGAAAGAACAAAT 59.809 43.478 0.00 0.00 0.00 2.32
313 314 3.826157 TCGGCATCCAGAAAGAACAAATT 59.174 39.130 0.00 0.00 0.00 1.82
314 315 5.007034 TCGGCATCCAGAAAGAACAAATTA 58.993 37.500 0.00 0.00 0.00 1.40
315 316 5.475220 TCGGCATCCAGAAAGAACAAATTAA 59.525 36.000 0.00 0.00 0.00 1.40
316 317 5.572896 CGGCATCCAGAAAGAACAAATTAAC 59.427 40.000 0.00 0.00 0.00 2.01
317 318 5.869344 GGCATCCAGAAAGAACAAATTAACC 59.131 40.000 0.00 0.00 0.00 2.85
318 319 6.454795 GCATCCAGAAAGAACAAATTAACCA 58.545 36.000 0.00 0.00 0.00 3.67
319 320 7.099120 GCATCCAGAAAGAACAAATTAACCAT 58.901 34.615 0.00 0.00 0.00 3.55
320 321 7.276438 GCATCCAGAAAGAACAAATTAACCATC 59.724 37.037 0.00 0.00 0.00 3.51
321 322 8.526147 CATCCAGAAAGAACAAATTAACCATCT 58.474 33.333 0.00 0.00 0.00 2.90
322 323 9.753674 ATCCAGAAAGAACAAATTAACCATCTA 57.246 29.630 0.00 0.00 0.00 1.98
323 324 9.753674 TCCAGAAAGAACAAATTAACCATCTAT 57.246 29.630 0.00 0.00 0.00 1.98
358 359 9.092876 TGGAACAAGTTTTTAAATGTTGTGATC 57.907 29.630 9.12 5.71 36.22 2.92
359 360 9.092876 GGAACAAGTTTTTAAATGTTGTGATCA 57.907 29.630 9.12 0.00 36.22 2.92
453 454 9.462174 TCATGAACATTTTTCAGTATTGTGAAC 57.538 29.630 0.00 0.00 36.15 3.18
454 455 9.467258 CATGAACATTTTTCAGTATTGTGAACT 57.533 29.630 0.00 0.00 36.15 3.01
456 457 9.868277 TGAACATTTTTCAGTATTGTGAACTTT 57.132 25.926 0.00 0.00 36.15 2.66
486 487 9.097257 TCAAACTCAAGAACAAATTTCAAATCC 57.903 29.630 0.00 0.00 0.00 3.01
487 488 8.881743 CAAACTCAAGAACAAATTTCAAATCCA 58.118 29.630 0.00 0.00 0.00 3.41
488 489 9.447157 AAACTCAAGAACAAATTTCAAATCCAA 57.553 25.926 0.00 0.00 0.00 3.53
489 490 8.652810 ACTCAAGAACAAATTTCAAATCCAAG 57.347 30.769 0.00 0.00 0.00 3.61
490 491 8.260114 ACTCAAGAACAAATTTCAAATCCAAGT 58.740 29.630 0.00 0.00 0.00 3.16
491 492 9.748708 CTCAAGAACAAATTTCAAATCCAAGTA 57.251 29.630 0.00 0.00 0.00 2.24
492 493 9.528018 TCAAGAACAAATTTCAAATCCAAGTAC 57.472 29.630 0.00 0.00 0.00 2.73
493 494 9.311916 CAAGAACAAATTTCAAATCCAAGTACA 57.688 29.630 0.00 0.00 0.00 2.90
548 549 8.915871 ATTCATGAAGGTTTTATGAATTCGTG 57.084 30.769 14.54 0.00 44.69 4.35
549 550 7.680442 TCATGAAGGTTTTATGAATTCGTGA 57.320 32.000 10.54 0.00 41.30 4.35
550 551 8.105097 TCATGAAGGTTTTATGAATTCGTGAA 57.895 30.769 10.54 5.60 40.87 3.18
551 552 8.739039 TCATGAAGGTTTTATGAATTCGTGAAT 58.261 29.630 10.54 0.00 40.87 2.57
552 553 9.357652 CATGAAGGTTTTATGAATTCGTGAATT 57.642 29.630 10.54 7.52 43.14 2.17
553 554 9.927668 ATGAAGGTTTTATGAATTCGTGAATTT 57.072 25.926 10.54 4.17 40.77 1.82
554 555 9.757227 TGAAGGTTTTATGAATTCGTGAATTTT 57.243 25.926 10.54 3.86 40.77 1.82
557 558 9.541143 AGGTTTTATGAATTCGTGAATTTTTGT 57.459 25.926 10.54 0.39 40.77 2.83
588 589 8.870160 TCAGAAACATTTTGTAACAAATCAGG 57.130 30.769 0.00 0.00 0.00 3.86
589 590 8.474025 TCAGAAACATTTTGTAACAAATCAGGT 58.526 29.630 0.00 0.00 0.00 4.00
590 591 9.097257 CAGAAACATTTTGTAACAAATCAGGTT 57.903 29.630 0.00 0.00 0.00 3.50
591 592 9.097257 AGAAACATTTTGTAACAAATCAGGTTG 57.903 29.630 0.00 0.00 34.52 3.77
592 593 8.785329 AAACATTTTGTAACAAATCAGGTTGT 57.215 26.923 0.00 0.00 43.58 3.32
594 595 8.785329 ACATTTTGTAACAAATCAGGTTGTTT 57.215 26.923 8.45 0.00 46.97 2.83
595 596 9.877178 ACATTTTGTAACAAATCAGGTTGTTTA 57.123 25.926 8.45 0.00 46.97 2.01
605 606 9.829507 ACAAATCAGGTTGTTTAAATTTCATGA 57.170 25.926 0.00 0.00 38.60 3.07
667 668 8.956426 TCATGAATTTTATTTACTGTGGAGTCC 58.044 33.333 0.73 0.73 33.21 3.85
668 669 8.960591 CATGAATTTTATTTACTGTGGAGTCCT 58.039 33.333 11.33 0.00 33.21 3.85
670 671 9.667107 TGAATTTTATTTACTGTGGAGTCCTAG 57.333 33.333 11.33 11.22 33.21 3.02
671 672 9.110502 GAATTTTATTTACTGTGGAGTCCTAGG 57.889 37.037 11.33 0.82 33.21 3.02
672 673 7.563724 TTTTATTTACTGTGGAGTCCTAGGT 57.436 36.000 11.33 8.50 33.21 3.08
673 674 7.563724 TTTATTTACTGTGGAGTCCTAGGTT 57.436 36.000 11.33 0.00 33.21 3.50
674 675 8.669055 TTTATTTACTGTGGAGTCCTAGGTTA 57.331 34.615 11.33 0.00 33.21 2.85
675 676 5.990120 TTTACTGTGGAGTCCTAGGTTAC 57.010 43.478 11.33 0.00 33.21 2.50
676 677 2.817665 ACTGTGGAGTCCTAGGTTACC 58.182 52.381 11.33 10.78 0.00 2.85
677 678 2.108970 CTGTGGAGTCCTAGGTTACCC 58.891 57.143 11.33 6.95 0.00 3.69
678 679 1.109609 GTGGAGTCCTAGGTTACCCG 58.890 60.000 11.33 0.00 35.12 5.28
679 680 0.685458 TGGAGTCCTAGGTTACCCGC 60.685 60.000 11.33 0.00 35.12 6.13
680 681 1.732308 GAGTCCTAGGTTACCCGCG 59.268 63.158 9.08 0.00 35.12 6.46
681 682 1.000396 AGTCCTAGGTTACCCGCGT 60.000 57.895 9.08 0.00 35.12 6.01
682 683 1.140375 GTCCTAGGTTACCCGCGTG 59.860 63.158 9.08 0.00 35.12 5.34
683 684 2.053865 TCCTAGGTTACCCGCGTGG 61.054 63.158 8.42 8.42 41.37 4.94
693 694 3.206246 CCGCGTGGGTGTTGTTGT 61.206 61.111 7.26 0.00 0.00 3.32
694 695 2.326550 CGCGTGGGTGTTGTTGTC 59.673 61.111 0.00 0.00 0.00 3.18
695 696 2.719354 GCGTGGGTGTTGTTGTCC 59.281 61.111 0.00 0.00 0.00 4.02
696 697 1.822186 GCGTGGGTGTTGTTGTCCT 60.822 57.895 0.00 0.00 0.00 3.85
697 698 1.782028 GCGTGGGTGTTGTTGTCCTC 61.782 60.000 0.00 0.00 0.00 3.71
698 699 1.164041 CGTGGGTGTTGTTGTCCTCC 61.164 60.000 0.00 0.00 0.00 4.30
699 700 0.106918 GTGGGTGTTGTTGTCCTCCA 60.107 55.000 0.00 0.00 0.00 3.86
700 701 0.850100 TGGGTGTTGTTGTCCTCCAT 59.150 50.000 0.00 0.00 0.00 3.41
701 702 1.216678 TGGGTGTTGTTGTCCTCCATT 59.783 47.619 0.00 0.00 0.00 3.16
702 703 1.886542 GGGTGTTGTTGTCCTCCATTC 59.113 52.381 0.00 0.00 0.00 2.67
703 704 1.886542 GGTGTTGTTGTCCTCCATTCC 59.113 52.381 0.00 0.00 0.00 3.01
704 705 1.886542 GTGTTGTTGTCCTCCATTCCC 59.113 52.381 0.00 0.00 0.00 3.97
705 706 1.496857 TGTTGTTGTCCTCCATTCCCA 59.503 47.619 0.00 0.00 0.00 4.37
706 707 1.886542 GTTGTTGTCCTCCATTCCCAC 59.113 52.381 0.00 0.00 0.00 4.61
707 708 1.144691 TGTTGTCCTCCATTCCCACA 58.855 50.000 0.00 0.00 0.00 4.17
708 709 1.202879 TGTTGTCCTCCATTCCCACAC 60.203 52.381 0.00 0.00 0.00 3.82
709 710 1.144691 TTGTCCTCCATTCCCACACA 58.855 50.000 0.00 0.00 0.00 3.72
782 784 2.524306 CCATTTTGTCCAGCCCAACTA 58.476 47.619 0.00 0.00 0.00 2.24
804 806 0.333652 TGGTACATCGGGAGAGTCCA 59.666 55.000 0.00 0.00 45.48 4.02
925 928 0.895530 CTCTCGGTAAGGCCAACTCA 59.104 55.000 5.01 0.00 36.97 3.41
943 946 0.893270 CATCCTCGGCACAAACCCAA 60.893 55.000 0.00 0.00 0.00 4.12
944 947 0.039618 ATCCTCGGCACAAACCCAAT 59.960 50.000 0.00 0.00 0.00 3.16
945 948 0.608035 TCCTCGGCACAAACCCAATC 60.608 55.000 0.00 0.00 0.00 2.67
946 949 0.609131 CCTCGGCACAAACCCAATCT 60.609 55.000 0.00 0.00 0.00 2.40
947 950 1.247567 CTCGGCACAAACCCAATCTT 58.752 50.000 0.00 0.00 0.00 2.40
949 952 2.817258 CTCGGCACAAACCCAATCTTAA 59.183 45.455 0.00 0.00 0.00 1.85
950 953 3.426615 TCGGCACAAACCCAATCTTAAT 58.573 40.909 0.00 0.00 0.00 1.40
952 955 3.428862 CGGCACAAACCCAATCTTAATCC 60.429 47.826 0.00 0.00 0.00 3.01
953 956 3.513515 GGCACAAACCCAATCTTAATCCA 59.486 43.478 0.00 0.00 0.00 3.41
970 990 1.079819 CACCGTCGATTGCTCACCT 60.080 57.895 0.00 0.00 0.00 4.00
980 1000 0.108186 TTGCTCACCTACGGCATCTG 60.108 55.000 0.00 0.00 35.84 2.90
992 1015 0.393537 GGCATCTGCTTACCACAGCT 60.394 55.000 1.70 0.00 40.79 4.24
1293 1316 0.904865 TGAGGCGGATTCCAGTCACT 60.905 55.000 3.09 0.00 0.00 3.41
1318 1341 5.531287 GGGTATGAGATTGTTATGGTGAACC 59.469 44.000 0.00 0.00 0.00 3.62
1683 1736 1.219393 GAGGAGAAAGCAGGACCCG 59.781 63.158 0.00 0.00 0.00 5.28
1706 1762 0.548031 TCCCGTATCTGTACCGGTCT 59.452 55.000 12.40 0.00 32.87 3.85
1733 7087 1.226575 GATGCGTGGTCGTCGATGA 60.227 57.895 2.39 2.39 39.49 2.92
1789 7143 6.037830 CACATACTTTGAAACCGGGGTTATAG 59.962 42.308 6.32 0.00 37.35 1.31
1796 7150 1.218844 ACCGGGGTTATAGCCATTGT 58.781 50.000 6.32 0.00 37.54 2.71
1829 7183 1.340248 AGCTTCGTTCAACCTCGAGAA 59.660 47.619 15.71 0.00 37.38 2.87
2017 12301 7.222805 GGTTTTTGACAGATTTTGAGAAAGGTC 59.777 37.037 0.00 0.00 0.00 3.85
2164 12456 3.119319 GGAAAGGAAGGAGAGGGATTCT 58.881 50.000 0.00 0.00 39.43 2.40
2297 12594 6.126968 TGTCACTGATGAGGTGAATGATACAT 60.127 38.462 0.00 0.00 43.90 2.29
2298 12595 6.423302 GTCACTGATGAGGTGAATGATACATC 59.577 42.308 0.00 0.00 43.90 3.06
2299 12596 5.404667 CACTGATGAGGTGAATGATACATCG 59.595 44.000 0.00 0.00 37.51 3.84
2300 12597 5.069648 ACTGATGAGGTGAATGATACATCGT 59.930 40.000 0.00 0.00 37.51 3.73
2301 12598 6.265422 ACTGATGAGGTGAATGATACATCGTA 59.735 38.462 0.00 0.00 37.51 3.43
2302 12599 6.447162 TGATGAGGTGAATGATACATCGTAC 58.553 40.000 0.00 0.00 37.51 3.67
2303 12600 5.845391 TGAGGTGAATGATACATCGTACA 57.155 39.130 0.00 0.00 31.94 2.90
2304 12601 6.405278 TGAGGTGAATGATACATCGTACAT 57.595 37.500 0.00 0.00 31.94 2.29
2499 12823 6.694447 CAATTTCAGGAGTTTGGTCAATGAT 58.306 36.000 0.00 0.00 0.00 2.45
2500 12824 7.577426 GCAATTTCAGGAGTTTGGTCAATGATA 60.577 37.037 0.00 0.00 0.00 2.15
2501 12825 6.817765 TTTCAGGAGTTTGGTCAATGATAC 57.182 37.500 0.00 0.00 0.00 2.24
2503 12827 6.065976 TCAGGAGTTTGGTCAATGATACAT 57.934 37.500 0.00 0.00 0.00 2.29
2504 12828 7.194112 TCAGGAGTTTGGTCAATGATACATA 57.806 36.000 0.00 0.00 0.00 2.29
2505 12829 7.629157 TCAGGAGTTTGGTCAATGATACATAA 58.371 34.615 0.00 0.00 0.00 1.90
2506 12830 7.552687 TCAGGAGTTTGGTCAATGATACATAAC 59.447 37.037 0.00 0.00 0.00 1.89
2507 12831 7.554118 CAGGAGTTTGGTCAATGATACATAACT 59.446 37.037 12.82 12.82 0.00 2.24
2512 12836 9.950680 GTTTGGTCAATGATACATAACTTATGG 57.049 33.333 12.48 0.00 40.47 2.74
2514 12838 8.902540 TGGTCAATGATACATAACTTATGGTC 57.097 34.615 12.48 10.22 40.47 4.02
2516 12840 9.337396 GGTCAATGATACATAACTTATGGTCAA 57.663 33.333 16.63 5.12 40.47 3.18
2547 12893 7.599998 ACATAATTTCAGGAGTTTTGAATGTGC 59.400 33.333 0.00 0.00 34.76 4.57
2560 12906 7.275560 AGTTTTGAATGTGCTGTTTCAAACTAC 59.724 33.333 15.81 13.39 46.11 2.73
2563 12909 6.264832 TGAATGTGCTGTTTCAAACTACAAG 58.735 36.000 1.10 0.00 0.00 3.16
2739 16173 1.036707 TTTTTCTTCCGCCTTGTGGG 58.963 50.000 0.00 0.00 33.43 4.61
3019 16461 1.654220 GCACTTCTGCGGCAAAGAA 59.346 52.632 22.64 15.00 32.44 2.52
3038 16480 9.358872 GCAAAGAAATAAGCTAAGCTATTTTGT 57.641 29.630 3.30 0.00 38.25 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.734748 GAGTCCTAGGGCTGTACGC 59.265 63.158 23.72 1.09 38.13 4.42
7 8 1.445716 CGGAGTCCTAGGGCTGTACG 61.446 65.000 23.72 18.23 0.00 3.67
9 10 1.455217 GCGGAGTCCTAGGGCTGTA 60.455 63.158 23.72 0.00 0.00 2.74
10 11 2.760385 GCGGAGTCCTAGGGCTGT 60.760 66.667 23.72 0.00 0.00 4.40
11 12 2.759973 TGCGGAGTCCTAGGGCTG 60.760 66.667 23.72 8.70 0.00 4.85
12 13 1.934459 TACTGCGGAGTCCTAGGGCT 61.934 60.000 18.01 18.01 33.21 5.19
13 14 1.455217 TACTGCGGAGTCCTAGGGC 60.455 63.158 14.74 4.79 33.21 5.19
14 15 0.824182 CCTACTGCGGAGTCCTAGGG 60.824 65.000 14.74 5.75 33.21 3.53
15 16 0.183014 TCCTACTGCGGAGTCCTAGG 59.817 60.000 14.74 15.56 33.21 3.02
16 17 1.600023 CTCCTACTGCGGAGTCCTAG 58.400 60.000 14.74 5.51 44.49 3.02
17 18 3.802862 CTCCTACTGCGGAGTCCTA 57.197 57.895 14.74 0.00 44.49 2.94
18 19 4.668151 CTCCTACTGCGGAGTCCT 57.332 61.111 14.74 0.00 44.49 3.85
23 24 1.890894 GTCAAGCTCCTACTGCGGA 59.109 57.895 0.00 0.00 35.28 5.54
24 25 1.517257 CGTCAAGCTCCTACTGCGG 60.517 63.158 0.00 0.00 35.28 5.69
25 26 0.798771 GACGTCAAGCTCCTACTGCG 60.799 60.000 11.55 0.00 35.28 5.18
26 27 0.243907 TGACGTCAAGCTCCTACTGC 59.756 55.000 17.62 0.00 0.00 4.40
27 28 1.402984 GGTGACGTCAAGCTCCTACTG 60.403 57.143 21.95 0.00 0.00 2.74
28 29 0.889306 GGTGACGTCAAGCTCCTACT 59.111 55.000 21.95 0.00 0.00 2.57
29 30 0.889306 AGGTGACGTCAAGCTCCTAC 59.111 55.000 21.95 4.81 0.00 3.18
30 31 1.174783 GAGGTGACGTCAAGCTCCTA 58.825 55.000 21.95 0.00 36.40 2.94
31 32 1.968310 GAGGTGACGTCAAGCTCCT 59.032 57.895 21.95 21.79 36.40 3.69
32 33 4.580835 GAGGTGACGTCAAGCTCC 57.419 61.111 21.95 17.12 36.40 4.70
33 34 0.318762 AAGGAGGTGACGTCAAGCTC 59.681 55.000 21.95 24.41 40.63 4.09
34 35 0.034059 CAAGGAGGTGACGTCAAGCT 59.966 55.000 21.95 18.37 0.00 3.74
35 36 0.951040 CCAAGGAGGTGACGTCAAGC 60.951 60.000 21.95 13.88 0.00 4.01
36 37 3.217242 CCAAGGAGGTGACGTCAAG 57.783 57.895 21.95 4.39 0.00 3.02
57 58 1.302033 GATAGCGCACAGGATGGGG 60.302 63.158 11.47 0.00 42.43 4.96
59 60 0.882042 GTGGATAGCGCACAGGATGG 60.882 60.000 11.47 0.00 43.62 3.51
60 61 1.217585 CGTGGATAGCGCACAGGATG 61.218 60.000 11.47 0.00 46.00 3.51
61 62 1.068083 CGTGGATAGCGCACAGGAT 59.932 57.895 11.47 0.00 0.00 3.24
62 63 2.049767 TCGTGGATAGCGCACAGGA 61.050 57.895 11.47 11.18 0.00 3.86
63 64 1.878522 GTCGTGGATAGCGCACAGG 60.879 63.158 11.47 8.89 0.00 4.00
64 65 1.153842 TGTCGTGGATAGCGCACAG 60.154 57.895 11.47 0.00 0.00 3.66
65 66 1.445410 GTGTCGTGGATAGCGCACA 60.445 57.895 11.47 0.00 36.84 4.57
66 67 2.165301 GGTGTCGTGGATAGCGCAC 61.165 63.158 11.47 0.00 36.46 5.34
67 68 1.884075 AAGGTGTCGTGGATAGCGCA 61.884 55.000 11.47 0.00 0.00 6.09
68 69 1.153628 AAGGTGTCGTGGATAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
69 70 0.172578 TCAAGGTGTCGTGGATAGCG 59.827 55.000 0.00 0.00 0.00 4.26
70 71 2.000447 GTTCAAGGTGTCGTGGATAGC 59.000 52.381 0.00 0.00 0.00 2.97
71 72 3.254060 CAGTTCAAGGTGTCGTGGATAG 58.746 50.000 0.00 0.00 0.00 2.08
72 73 2.028476 CCAGTTCAAGGTGTCGTGGATA 60.028 50.000 0.00 0.00 0.00 2.59
73 74 1.270839 CCAGTTCAAGGTGTCGTGGAT 60.271 52.381 0.00 0.00 0.00 3.41
74 75 0.105964 CCAGTTCAAGGTGTCGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
75 76 0.105964 TCCAGTTCAAGGTGTCGTGG 59.894 55.000 0.00 0.00 0.00 4.94
76 77 1.948104 TTCCAGTTCAAGGTGTCGTG 58.052 50.000 0.00 0.00 0.00 4.35
77 78 2.285977 GTTTCCAGTTCAAGGTGTCGT 58.714 47.619 0.00 0.00 0.00 4.34
78 79 2.031683 GTGTTTCCAGTTCAAGGTGTCG 59.968 50.000 0.00 0.00 0.00 4.35
79 80 2.031683 CGTGTTTCCAGTTCAAGGTGTC 59.968 50.000 0.00 0.00 0.00 3.67
80 81 2.014128 CGTGTTTCCAGTTCAAGGTGT 58.986 47.619 0.00 0.00 0.00 4.16
81 82 1.268539 GCGTGTTTCCAGTTCAAGGTG 60.269 52.381 0.00 0.00 0.00 4.00
82 83 1.021968 GCGTGTTTCCAGTTCAAGGT 58.978 50.000 0.00 0.00 0.00 3.50
83 84 0.310854 GGCGTGTTTCCAGTTCAAGG 59.689 55.000 0.00 0.00 0.00 3.61
84 85 0.310854 GGGCGTGTTTCCAGTTCAAG 59.689 55.000 0.00 0.00 0.00 3.02
85 86 0.106918 AGGGCGTGTTTCCAGTTCAA 60.107 50.000 0.00 0.00 0.00 2.69
86 87 0.817634 CAGGGCGTGTTTCCAGTTCA 60.818 55.000 0.00 0.00 0.00 3.18
87 88 1.515521 CCAGGGCGTGTTTCCAGTTC 61.516 60.000 6.43 0.00 0.00 3.01
88 89 1.528309 CCAGGGCGTGTTTCCAGTT 60.528 57.895 6.43 0.00 0.00 3.16
89 90 2.113139 CCAGGGCGTGTTTCCAGT 59.887 61.111 6.43 0.00 0.00 4.00
90 91 3.365265 GCCAGGGCGTGTTTCCAG 61.365 66.667 6.43 0.00 0.00 3.86
91 92 4.966787 GGCCAGGGCGTGTTTCCA 62.967 66.667 0.00 0.00 43.06 3.53
101 102 4.738998 TGGTTCATGCGGCCAGGG 62.739 66.667 2.24 0.00 0.00 4.45
102 103 2.216750 CTTTGGTTCATGCGGCCAGG 62.217 60.000 2.24 0.00 33.41 4.45
103 104 1.213537 CTTTGGTTCATGCGGCCAG 59.786 57.895 2.24 0.00 33.41 4.85
104 105 1.523154 GACTTTGGTTCATGCGGCCA 61.523 55.000 2.24 0.00 0.00 5.36
105 106 1.212751 GACTTTGGTTCATGCGGCC 59.787 57.895 0.00 0.00 0.00 6.13
106 107 1.154225 CGACTTTGGTTCATGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
107 108 0.871722 TTCGACTTTGGTTCATGCGG 59.128 50.000 0.00 0.00 0.00 5.69
108 109 2.159430 TGATTCGACTTTGGTTCATGCG 59.841 45.455 0.00 0.00 0.00 4.73
109 110 3.829886 TGATTCGACTTTGGTTCATGC 57.170 42.857 0.00 0.00 0.00 4.06
110 111 8.741101 TTAATTTGATTCGACTTTGGTTCATG 57.259 30.769 0.00 0.00 0.00 3.07
111 112 9.757227 TTTTAATTTGATTCGACTTTGGTTCAT 57.243 25.926 0.00 0.00 0.00 2.57
112 113 9.757227 ATTTTAATTTGATTCGACTTTGGTTCA 57.243 25.926 0.00 0.00 0.00 3.18
114 115 8.911662 CGATTTTAATTTGATTCGACTTTGGTT 58.088 29.630 0.00 0.00 0.00 3.67
115 116 8.079809 ACGATTTTAATTTGATTCGACTTTGGT 58.920 29.630 0.00 0.00 0.00 3.67
116 117 8.365210 CACGATTTTAATTTGATTCGACTTTGG 58.635 33.333 0.00 0.00 0.00 3.28
117 118 8.901748 ACACGATTTTAATTTGATTCGACTTTG 58.098 29.630 0.00 3.72 0.00 2.77
118 119 9.113876 GACACGATTTTAATTTGATTCGACTTT 57.886 29.630 0.00 0.00 0.00 2.66
119 120 8.504005 AGACACGATTTTAATTTGATTCGACTT 58.496 29.630 0.00 0.00 0.00 3.01
120 121 8.029642 AGACACGATTTTAATTTGATTCGACT 57.970 30.769 0.00 0.00 0.00 4.18
121 122 8.655378 AAGACACGATTTTAATTTGATTCGAC 57.345 30.769 0.00 0.00 0.00 4.20
122 123 8.717821 AGAAGACACGATTTTAATTTGATTCGA 58.282 29.630 0.00 0.00 0.00 3.71
123 124 8.880768 AGAAGACACGATTTTAATTTGATTCG 57.119 30.769 0.00 0.00 0.00 3.34
125 126 9.626045 GGAAGAAGACACGATTTTAATTTGATT 57.374 29.630 0.00 0.00 0.00 2.57
126 127 9.014297 AGGAAGAAGACACGATTTTAATTTGAT 57.986 29.630 0.00 0.00 0.00 2.57
127 128 8.391075 AGGAAGAAGACACGATTTTAATTTGA 57.609 30.769 0.00 0.00 0.00 2.69
128 129 7.750903 GGAGGAAGAAGACACGATTTTAATTTG 59.249 37.037 0.00 0.00 0.00 2.32
129 130 7.447238 TGGAGGAAGAAGACACGATTTTAATTT 59.553 33.333 0.00 0.00 0.00 1.82
130 131 6.940298 TGGAGGAAGAAGACACGATTTTAATT 59.060 34.615 0.00 0.00 0.00 1.40
131 132 6.472887 TGGAGGAAGAAGACACGATTTTAAT 58.527 36.000 0.00 0.00 0.00 1.40
132 133 5.860611 TGGAGGAAGAAGACACGATTTTAA 58.139 37.500 0.00 0.00 0.00 1.52
133 134 5.477607 TGGAGGAAGAAGACACGATTTTA 57.522 39.130 0.00 0.00 0.00 1.52
134 135 4.351874 TGGAGGAAGAAGACACGATTTT 57.648 40.909 0.00 0.00 0.00 1.82
135 136 4.040461 TCTTGGAGGAAGAAGACACGATTT 59.960 41.667 0.00 0.00 37.78 2.17
136 137 3.578716 TCTTGGAGGAAGAAGACACGATT 59.421 43.478 0.00 0.00 37.78 3.34
137 138 3.165875 TCTTGGAGGAAGAAGACACGAT 58.834 45.455 0.00 0.00 37.78 3.73
138 139 2.594131 TCTTGGAGGAAGAAGACACGA 58.406 47.619 0.00 0.00 37.78 4.35
139 140 3.516615 GATCTTGGAGGAAGAAGACACG 58.483 50.000 0.00 0.00 44.11 4.49
140 141 3.516615 CGATCTTGGAGGAAGAAGACAC 58.483 50.000 0.00 0.00 44.11 3.67
141 142 2.093973 GCGATCTTGGAGGAAGAAGACA 60.094 50.000 0.00 0.00 44.11 3.41
142 143 2.093973 TGCGATCTTGGAGGAAGAAGAC 60.094 50.000 0.00 0.00 44.11 3.01
143 144 2.179427 TGCGATCTTGGAGGAAGAAGA 58.821 47.619 0.00 0.00 44.11 2.87
144 145 2.680312 TGCGATCTTGGAGGAAGAAG 57.320 50.000 0.00 0.00 44.11 2.85
145 146 2.501316 TGATGCGATCTTGGAGGAAGAA 59.499 45.455 0.00 0.00 44.11 2.52
146 147 2.102084 CTGATGCGATCTTGGAGGAAGA 59.898 50.000 0.00 0.00 45.03 2.87
147 148 2.102084 TCTGATGCGATCTTGGAGGAAG 59.898 50.000 0.00 0.00 0.00 3.46
148 149 2.110578 TCTGATGCGATCTTGGAGGAA 58.889 47.619 0.00 0.00 0.00 3.36
149 150 1.410517 GTCTGATGCGATCTTGGAGGA 59.589 52.381 0.00 0.00 0.00 3.71
150 151 1.137675 TGTCTGATGCGATCTTGGAGG 59.862 52.381 0.00 0.00 0.00 4.30
151 152 2.471818 CTGTCTGATGCGATCTTGGAG 58.528 52.381 0.00 0.00 0.00 3.86
152 153 1.137675 CCTGTCTGATGCGATCTTGGA 59.862 52.381 0.00 0.00 0.00 3.53
153 154 1.579698 CCTGTCTGATGCGATCTTGG 58.420 55.000 0.00 0.00 0.00 3.61
154 155 0.935898 GCCTGTCTGATGCGATCTTG 59.064 55.000 0.00 0.00 0.00 3.02
155 156 0.538584 TGCCTGTCTGATGCGATCTT 59.461 50.000 0.00 0.00 0.00 2.40
156 157 0.538584 TTGCCTGTCTGATGCGATCT 59.461 50.000 0.00 0.00 0.00 2.75
157 158 0.935898 CTTGCCTGTCTGATGCGATC 59.064 55.000 0.00 0.00 0.00 3.69
158 159 1.094073 GCTTGCCTGTCTGATGCGAT 61.094 55.000 0.00 0.00 0.00 4.58
159 160 1.742880 GCTTGCCTGTCTGATGCGA 60.743 57.895 0.00 0.00 0.00 5.10
160 161 2.789917 GCTTGCCTGTCTGATGCG 59.210 61.111 0.00 0.00 0.00 4.73
161 162 2.758089 CCGCTTGCCTGTCTGATGC 61.758 63.158 0.00 0.00 0.00 3.91
162 163 1.078918 TCCGCTTGCCTGTCTGATG 60.079 57.895 0.00 0.00 0.00 3.07
163 164 1.078848 GTCCGCTTGCCTGTCTGAT 60.079 57.895 0.00 0.00 0.00 2.90
164 165 2.343758 GTCCGCTTGCCTGTCTGA 59.656 61.111 0.00 0.00 0.00 3.27
165 166 3.114616 CGTCCGCTTGCCTGTCTG 61.115 66.667 0.00 0.00 0.00 3.51
166 167 2.867855 TTCGTCCGCTTGCCTGTCT 61.868 57.895 0.00 0.00 0.00 3.41
167 168 2.357034 TTCGTCCGCTTGCCTGTC 60.357 61.111 0.00 0.00 0.00 3.51
168 169 2.665185 GTTCGTCCGCTTGCCTGT 60.665 61.111 0.00 0.00 0.00 4.00
169 170 3.423154 GGTTCGTCCGCTTGCCTG 61.423 66.667 0.00 0.00 0.00 4.85
170 171 3.591254 GAGGTTCGTCCGCTTGCCT 62.591 63.158 0.00 0.00 41.99 4.75
171 172 3.119096 GAGGTTCGTCCGCTTGCC 61.119 66.667 0.00 0.00 41.99 4.52
172 173 0.459585 TATGAGGTTCGTCCGCTTGC 60.460 55.000 5.14 0.00 41.99 4.01
173 174 1.560923 CTATGAGGTTCGTCCGCTTG 58.439 55.000 5.14 0.00 41.99 4.01
174 175 0.179108 GCTATGAGGTTCGTCCGCTT 60.179 55.000 5.14 2.25 41.99 4.68
175 176 1.437986 GCTATGAGGTTCGTCCGCT 59.562 57.895 5.14 0.00 41.99 5.52
176 177 1.944676 CGCTATGAGGTTCGTCCGC 60.945 63.158 0.00 0.00 41.99 5.54
177 178 1.944676 GCGCTATGAGGTTCGTCCG 60.945 63.158 0.00 0.00 41.99 4.79
178 179 1.591863 GGCGCTATGAGGTTCGTCC 60.592 63.158 7.64 0.00 0.00 4.79
179 180 1.944676 CGGCGCTATGAGGTTCGTC 60.945 63.158 7.64 0.00 0.00 4.20
180 181 1.940883 TTCGGCGCTATGAGGTTCGT 61.941 55.000 7.64 0.00 0.00 3.85
181 182 1.209275 CTTCGGCGCTATGAGGTTCG 61.209 60.000 7.64 0.00 0.00 3.95
182 183 1.491505 GCTTCGGCGCTATGAGGTTC 61.492 60.000 7.64 0.00 0.00 3.62
183 184 1.521681 GCTTCGGCGCTATGAGGTT 60.522 57.895 7.64 0.00 0.00 3.50
184 185 2.107141 GCTTCGGCGCTATGAGGT 59.893 61.111 7.64 0.00 0.00 3.85
185 186 1.953138 CTGCTTCGGCGCTATGAGG 60.953 63.158 7.64 4.95 45.37 3.86
186 187 1.066422 TCTGCTTCGGCGCTATGAG 59.934 57.895 7.64 1.60 45.37 2.90
187 188 1.226974 GTCTGCTTCGGCGCTATGA 60.227 57.895 7.64 0.00 45.37 2.15
188 189 2.580470 CGTCTGCTTCGGCGCTATG 61.580 63.158 7.64 0.00 45.37 2.23
189 190 2.278857 CGTCTGCTTCGGCGCTAT 60.279 61.111 7.64 0.00 45.37 2.97
190 191 3.436924 TCGTCTGCTTCGGCGCTA 61.437 61.111 7.64 0.00 45.37 4.26
193 194 2.507102 ATGTCGTCTGCTTCGGCG 60.507 61.111 0.00 0.00 45.37 6.46
194 195 2.456119 CCATGTCGTCTGCTTCGGC 61.456 63.158 0.00 0.00 42.19 5.54
195 196 1.079819 ACCATGTCGTCTGCTTCGG 60.080 57.895 0.00 0.00 0.00 4.30
196 197 1.354337 CCACCATGTCGTCTGCTTCG 61.354 60.000 0.00 0.00 0.00 3.79
197 198 1.021390 CCCACCATGTCGTCTGCTTC 61.021 60.000 0.00 0.00 0.00 3.86
198 199 1.003355 CCCACCATGTCGTCTGCTT 60.003 57.895 0.00 0.00 0.00 3.91
199 200 1.892819 CTCCCACCATGTCGTCTGCT 61.893 60.000 0.00 0.00 0.00 4.24
200 201 1.448540 CTCCCACCATGTCGTCTGC 60.449 63.158 0.00 0.00 0.00 4.26
201 202 1.219124 CCTCCCACCATGTCGTCTG 59.781 63.158 0.00 0.00 0.00 3.51
202 203 2.660064 GCCTCCCACCATGTCGTCT 61.660 63.158 0.00 0.00 0.00 4.18
203 204 2.125106 GCCTCCCACCATGTCGTC 60.125 66.667 0.00 0.00 0.00 4.20
204 205 2.927856 TGCCTCCCACCATGTCGT 60.928 61.111 0.00 0.00 0.00 4.34
205 206 2.124983 CTGCCTCCCACCATGTCG 60.125 66.667 0.00 0.00 0.00 4.35
206 207 2.273449 CCTGCCTCCCACCATGTC 59.727 66.667 0.00 0.00 0.00 3.06
207 208 4.052518 GCCTGCCTCCCACCATGT 62.053 66.667 0.00 0.00 0.00 3.21
208 209 3.736224 AGCCTGCCTCCCACCATG 61.736 66.667 0.00 0.00 0.00 3.66
209 210 3.736224 CAGCCTGCCTCCCACCAT 61.736 66.667 0.00 0.00 0.00 3.55
219 220 3.741476 CAACTTCGCCCAGCCTGC 61.741 66.667 0.00 0.00 0.00 4.85
220 221 3.058160 CCAACTTCGCCCAGCCTG 61.058 66.667 0.00 0.00 0.00 4.85
224 225 3.423154 GTCGCCAACTTCGCCCAG 61.423 66.667 0.00 0.00 0.00 4.45
227 228 2.807631 TAGACGTCGCCAACTTCGCC 62.808 60.000 10.46 0.00 31.62 5.54
228 229 1.443194 TAGACGTCGCCAACTTCGC 60.443 57.895 10.46 0.00 31.62 4.70
229 230 1.393597 CGTAGACGTCGCCAACTTCG 61.394 60.000 10.46 0.00 31.62 3.79
230 231 1.069378 CCGTAGACGTCGCCAACTTC 61.069 60.000 10.46 0.00 37.74 3.01
231 232 1.080974 CCGTAGACGTCGCCAACTT 60.081 57.895 10.46 0.00 37.74 2.66
232 233 2.564975 CCGTAGACGTCGCCAACT 59.435 61.111 10.46 0.00 37.74 3.16
233 234 2.505557 CCCGTAGACGTCGCCAAC 60.506 66.667 10.46 6.62 37.74 3.77
234 235 3.751246 CCCCGTAGACGTCGCCAA 61.751 66.667 10.46 0.00 37.74 4.52
239 240 3.525545 GAGGGCCCCGTAGACGTC 61.526 72.222 21.43 7.70 37.74 4.34
242 243 3.525545 GACGAGGGCCCCGTAGAC 61.526 72.222 30.46 18.54 40.67 2.59
257 258 3.195698 GGACATTGCCTCGGCGAC 61.196 66.667 4.99 0.00 45.51 5.19
258 259 3.664025 CTGGACATTGCCTCGGCGA 62.664 63.158 10.14 10.14 45.51 5.54
259 260 3.197790 CTGGACATTGCCTCGGCG 61.198 66.667 0.00 0.00 45.51 6.46
260 261 3.512516 GCTGGACATTGCCTCGGC 61.513 66.667 0.00 0.00 42.35 5.54
261 262 2.825836 GGCTGGACATTGCCTCGG 60.826 66.667 0.00 0.00 45.26 4.63
262 263 3.197790 CGGCTGGACATTGCCTCG 61.198 66.667 0.00 0.00 46.42 4.63
263 264 2.825836 CCGGCTGGACATTGCCTC 60.826 66.667 5.28 0.00 46.42 4.70
266 267 3.818787 CAGCCGGCTGGACATTGC 61.819 66.667 42.81 6.71 40.17 3.56
281 282 2.892425 GATGCCGACTTCGCCCAG 60.892 66.667 0.00 0.00 38.18 4.45
282 283 4.467084 GGATGCCGACTTCGCCCA 62.467 66.667 0.00 0.00 38.18 5.36
283 284 4.467084 TGGATGCCGACTTCGCCC 62.467 66.667 0.00 0.00 38.18 6.13
284 285 2.852495 TTCTGGATGCCGACTTCGCC 62.852 60.000 0.00 0.00 38.18 5.54
285 286 1.019278 TTTCTGGATGCCGACTTCGC 61.019 55.000 0.00 0.00 38.18 4.70
286 287 1.002366 CTTTCTGGATGCCGACTTCG 58.998 55.000 0.00 0.00 39.44 3.79
287 288 2.386661 TCTTTCTGGATGCCGACTTC 57.613 50.000 0.00 0.00 0.00 3.01
288 289 2.224523 TGTTCTTTCTGGATGCCGACTT 60.225 45.455 0.00 0.00 0.00 3.01
289 290 1.347707 TGTTCTTTCTGGATGCCGACT 59.652 47.619 0.00 0.00 0.00 4.18
290 291 1.808411 TGTTCTTTCTGGATGCCGAC 58.192 50.000 0.00 0.00 0.00 4.79
291 292 2.559698 TTGTTCTTTCTGGATGCCGA 57.440 45.000 0.00 0.00 0.00 5.54
292 293 3.855689 ATTTGTTCTTTCTGGATGCCG 57.144 42.857 0.00 0.00 0.00 5.69
293 294 5.869344 GGTTAATTTGTTCTTTCTGGATGCC 59.131 40.000 0.00 0.00 0.00 4.40
294 295 6.454795 TGGTTAATTTGTTCTTTCTGGATGC 58.545 36.000 0.00 0.00 0.00 3.91
295 296 8.526147 AGATGGTTAATTTGTTCTTTCTGGATG 58.474 33.333 0.00 0.00 0.00 3.51
296 297 8.655935 AGATGGTTAATTTGTTCTTTCTGGAT 57.344 30.769 0.00 0.00 0.00 3.41
297 298 9.753674 ATAGATGGTTAATTTGTTCTTTCTGGA 57.246 29.630 0.00 0.00 0.00 3.86
330 331 9.273016 TCACAACATTTAAAAACTTGTTCCAAA 57.727 25.926 2.63 0.00 30.23 3.28
331 332 8.833231 TCACAACATTTAAAAACTTGTTCCAA 57.167 26.923 2.63 0.00 30.23 3.53
332 333 9.092876 GATCACAACATTTAAAAACTTGTTCCA 57.907 29.630 2.63 0.00 30.23 3.53
333 334 9.092876 TGATCACAACATTTAAAAACTTGTTCC 57.907 29.630 2.63 0.17 30.23 3.62
427 428 9.462174 GTTCACAATACTGAAAAATGTTCATGA 57.538 29.630 0.00 0.00 31.90 3.07
428 429 9.467258 AGTTCACAATACTGAAAAATGTTCATG 57.533 29.630 0.00 0.00 31.90 3.07
430 431 9.868277 AAAGTTCACAATACTGAAAAATGTTCA 57.132 25.926 0.00 0.00 31.90 3.18
460 461 9.097257 GGATTTGAAATTTGTTCTTGAGTTTGA 57.903 29.630 0.00 0.00 0.00 2.69
461 462 8.881743 TGGATTTGAAATTTGTTCTTGAGTTTG 58.118 29.630 0.00 0.00 0.00 2.93
462 463 9.447157 TTGGATTTGAAATTTGTTCTTGAGTTT 57.553 25.926 0.00 0.00 0.00 2.66
463 464 9.101655 CTTGGATTTGAAATTTGTTCTTGAGTT 57.898 29.630 0.00 0.00 0.00 3.01
464 465 8.260114 ACTTGGATTTGAAATTTGTTCTTGAGT 58.740 29.630 0.00 0.00 0.00 3.41
465 466 8.652810 ACTTGGATTTGAAATTTGTTCTTGAG 57.347 30.769 0.00 0.00 0.00 3.02
466 467 9.528018 GTACTTGGATTTGAAATTTGTTCTTGA 57.472 29.630 0.00 0.00 0.00 3.02
467 468 9.311916 TGTACTTGGATTTGAAATTTGTTCTTG 57.688 29.630 0.00 0.00 0.00 3.02
523 524 8.739039 TCACGAATTCATAAAACCTTCATGAAT 58.261 29.630 8.96 3.76 46.32 2.57
524 525 8.105097 TCACGAATTCATAAAACCTTCATGAA 57.895 30.769 8.12 8.12 41.51 2.57
525 526 7.680442 TCACGAATTCATAAAACCTTCATGA 57.320 32.000 6.22 0.00 0.00 3.07
526 527 8.915871 ATTCACGAATTCATAAAACCTTCATG 57.084 30.769 6.22 0.00 0.00 3.07
527 528 9.927668 AAATTCACGAATTCATAAAACCTTCAT 57.072 25.926 6.22 0.00 39.88 2.57
528 529 9.757227 AAAATTCACGAATTCATAAAACCTTCA 57.243 25.926 6.22 0.00 39.88 3.02
531 532 9.541143 ACAAAAATTCACGAATTCATAAAACCT 57.459 25.926 6.22 0.00 39.88 3.50
562 563 9.311916 CCTGATTTGTTACAAAATGTTTCTGAA 57.688 29.630 14.70 0.00 29.89 3.02
563 564 8.474025 ACCTGATTTGTTACAAAATGTTTCTGA 58.526 29.630 14.70 0.00 29.89 3.27
564 565 8.647143 ACCTGATTTGTTACAAAATGTTTCTG 57.353 30.769 14.70 10.46 29.89 3.02
565 566 9.097257 CAACCTGATTTGTTACAAAATGTTTCT 57.903 29.630 14.70 0.00 29.89 2.52
566 567 8.878769 ACAACCTGATTTGTTACAAAATGTTTC 58.121 29.630 14.70 7.86 36.22 2.78
567 568 8.785329 ACAACCTGATTTGTTACAAAATGTTT 57.215 26.923 14.70 0.00 36.22 2.83
568 569 8.785329 AACAACCTGATTTGTTACAAAATGTT 57.215 26.923 14.70 14.14 45.77 2.71
569 570 8.785329 AAACAACCTGATTTGTTACAAAATGT 57.215 26.923 14.70 9.80 46.68 2.71
579 580 9.829507 TCATGAAATTTAAACAACCTGATTTGT 57.170 25.926 0.00 0.00 41.62 2.83
641 642 8.956426 GGACTCCACAGTAAATAAAATTCATGA 58.044 33.333 0.00 0.00 30.63 3.07
642 643 8.960591 AGGACTCCACAGTAAATAAAATTCATG 58.039 33.333 0.00 0.00 30.63 3.07
644 645 9.667107 CTAGGACTCCACAGTAAATAAAATTCA 57.333 33.333 0.00 0.00 30.63 2.57
645 646 9.110502 CCTAGGACTCCACAGTAAATAAAATTC 57.889 37.037 1.05 0.00 30.63 2.17
646 647 8.612145 ACCTAGGACTCCACAGTAAATAAAATT 58.388 33.333 17.98 0.00 30.63 1.82
647 648 8.159229 ACCTAGGACTCCACAGTAAATAAAAT 57.841 34.615 17.98 0.00 30.63 1.82
648 649 7.563724 ACCTAGGACTCCACAGTAAATAAAA 57.436 36.000 17.98 0.00 30.63 1.52
649 650 7.563724 AACCTAGGACTCCACAGTAAATAAA 57.436 36.000 17.98 0.00 30.63 1.40
650 651 7.124750 GGTAACCTAGGACTCCACAGTAAATAA 59.875 40.741 17.98 0.00 30.63 1.40
651 652 6.608808 GGTAACCTAGGACTCCACAGTAAATA 59.391 42.308 17.98 0.00 30.63 1.40
652 653 5.424573 GGTAACCTAGGACTCCACAGTAAAT 59.575 44.000 17.98 0.00 30.63 1.40
653 654 4.774200 GGTAACCTAGGACTCCACAGTAAA 59.226 45.833 17.98 0.00 30.63 2.01
654 655 4.347607 GGTAACCTAGGACTCCACAGTAA 58.652 47.826 17.98 0.00 30.63 2.24
655 656 3.973425 GGTAACCTAGGACTCCACAGTA 58.027 50.000 17.98 0.00 30.63 2.74
656 657 2.817665 GGTAACCTAGGACTCCACAGT 58.182 52.381 17.98 0.00 34.57 3.55
676 677 3.175976 GACAACAACACCCACGCGG 62.176 63.158 12.47 0.00 37.81 6.46
677 678 2.326550 GACAACAACACCCACGCG 59.673 61.111 3.53 3.53 0.00 6.01
678 679 1.782028 GAGGACAACAACACCCACGC 61.782 60.000 0.00 0.00 0.00 5.34
679 680 1.164041 GGAGGACAACAACACCCACG 61.164 60.000 0.00 0.00 0.00 4.94
680 681 0.106918 TGGAGGACAACAACACCCAC 60.107 55.000 0.00 0.00 0.00 4.61
681 682 0.850100 ATGGAGGACAACAACACCCA 59.150 50.000 0.00 0.00 0.00 4.51
682 683 1.886542 GAATGGAGGACAACAACACCC 59.113 52.381 0.00 0.00 0.00 4.61
683 684 1.886542 GGAATGGAGGACAACAACACC 59.113 52.381 0.00 0.00 0.00 4.16
684 685 1.886542 GGGAATGGAGGACAACAACAC 59.113 52.381 0.00 0.00 0.00 3.32
685 686 1.496857 TGGGAATGGAGGACAACAACA 59.503 47.619 0.00 0.00 0.00 3.33
686 687 1.886542 GTGGGAATGGAGGACAACAAC 59.113 52.381 0.00 0.00 0.00 3.32
687 688 1.496857 TGTGGGAATGGAGGACAACAA 59.503 47.619 0.00 0.00 0.00 2.83
688 689 1.144691 TGTGGGAATGGAGGACAACA 58.855 50.000 0.00 0.00 0.00 3.33
689 690 1.202879 TGTGTGGGAATGGAGGACAAC 60.203 52.381 0.00 0.00 0.00 3.32
690 691 1.144691 TGTGTGGGAATGGAGGACAA 58.855 50.000 0.00 0.00 0.00 3.18
691 692 0.400213 GTGTGTGGGAATGGAGGACA 59.600 55.000 0.00 0.00 0.00 4.02
692 693 0.400213 TGTGTGTGGGAATGGAGGAC 59.600 55.000 0.00 0.00 0.00 3.85
693 694 0.400213 GTGTGTGTGGGAATGGAGGA 59.600 55.000 0.00 0.00 0.00 3.71
694 695 0.110295 TGTGTGTGTGGGAATGGAGG 59.890 55.000 0.00 0.00 0.00 4.30
695 696 1.527034 CTGTGTGTGTGGGAATGGAG 58.473 55.000 0.00 0.00 0.00 3.86
696 697 0.110295 CCTGTGTGTGTGGGAATGGA 59.890 55.000 0.00 0.00 0.00 3.41
697 698 1.526575 GCCTGTGTGTGTGGGAATGG 61.527 60.000 0.00 0.00 0.00 3.16
698 699 1.526575 GGCCTGTGTGTGTGGGAATG 61.527 60.000 0.00 0.00 0.00 2.67
699 700 1.228552 GGCCTGTGTGTGTGGGAAT 60.229 57.895 0.00 0.00 0.00 3.01
700 701 2.194597 GGCCTGTGTGTGTGGGAA 59.805 61.111 0.00 0.00 0.00 3.97
701 702 4.248842 CGGCCTGTGTGTGTGGGA 62.249 66.667 0.00 0.00 0.00 4.37
702 703 4.248842 TCGGCCTGTGTGTGTGGG 62.249 66.667 0.00 0.00 0.00 4.61
703 704 2.666190 CTCGGCCTGTGTGTGTGG 60.666 66.667 0.00 0.00 0.00 4.17
704 705 3.349006 GCTCGGCCTGTGTGTGTG 61.349 66.667 0.00 0.00 0.00 3.82
705 706 3.860605 TGCTCGGCCTGTGTGTGT 61.861 61.111 0.00 0.00 0.00 3.72
706 707 3.349006 GTGCTCGGCCTGTGTGTG 61.349 66.667 0.00 0.00 0.00 3.82
707 708 4.626081 GGTGCTCGGCCTGTGTGT 62.626 66.667 0.00 0.00 0.00 3.72
782 784 2.434702 GGACTCTCCCGATGTACCAATT 59.565 50.000 0.00 0.00 0.00 2.32
791 793 2.841595 GGGATTGGACTCTCCCGAT 58.158 57.895 0.00 0.00 41.74 4.18
853 855 1.453379 CCGTAGAGGAGAAGGGCGA 60.453 63.158 0.00 0.00 45.00 5.54
925 928 0.039618 ATTGGGTTTGTGCCGAGGAT 59.960 50.000 0.00 0.00 0.00 3.24
943 946 3.131396 GCAATCGACGGTGGATTAAGAT 58.869 45.455 16.42 0.00 33.03 2.40
944 947 2.167693 AGCAATCGACGGTGGATTAAGA 59.832 45.455 16.42 0.00 33.03 2.10
945 948 2.540101 GAGCAATCGACGGTGGATTAAG 59.460 50.000 16.42 8.09 33.03 1.85
946 949 2.093921 TGAGCAATCGACGGTGGATTAA 60.094 45.455 16.42 2.84 33.03 1.40
947 950 1.478916 TGAGCAATCGACGGTGGATTA 59.521 47.619 16.42 0.78 33.03 1.75
949 952 0.460284 GTGAGCAATCGACGGTGGAT 60.460 55.000 0.00 0.00 0.00 3.41
950 953 1.080093 GTGAGCAATCGACGGTGGA 60.080 57.895 0.00 0.00 0.00 4.02
952 955 0.172578 TAGGTGAGCAATCGACGGTG 59.827 55.000 0.00 0.00 0.00 4.94
953 956 0.172803 GTAGGTGAGCAATCGACGGT 59.827 55.000 0.00 0.00 0.00 4.83
970 990 0.899019 TGTGGTAAGCAGATGCCGTA 59.101 50.000 0.14 0.00 43.38 4.02
980 1000 2.391389 GCCGTCAGCTGTGGTAAGC 61.391 63.158 22.74 12.01 43.88 3.09
1293 1316 5.966853 TCACCATAACAATCTCATACCCA 57.033 39.130 0.00 0.00 0.00 4.51
1706 1762 0.461548 GACCACGCATCTCATCTGGA 59.538 55.000 0.00 0.00 0.00 3.86
1733 7087 3.791320 TCCATCAAGAAGTAGACCACCT 58.209 45.455 0.00 0.00 0.00 4.00
1789 7143 1.039233 ATGCTACCAGGCACAATGGC 61.039 55.000 0.00 0.00 45.36 4.40
1796 7150 0.104855 CGAAGCTATGCTACCAGGCA 59.895 55.000 0.00 0.00 46.63 4.75
1829 7183 0.790993 TAGAACACCCCACTCCTCCT 59.209 55.000 0.00 0.00 0.00 3.69
2017 12301 5.464168 CAAGCTGTATTTCTTGACCCAAAG 58.536 41.667 0.00 0.00 41.50 2.77
2164 12456 7.814107 GTCATTTCTTGGATCATAACTTTGCAA 59.186 33.333 0.00 0.00 0.00 4.08
2300 12597 3.581755 GTGAACAGCCAGTACGAATGTA 58.418 45.455 0.00 0.00 0.00 2.29
2301 12598 2.413837 GTGAACAGCCAGTACGAATGT 58.586 47.619 0.00 0.00 0.00 2.71
2302 12599 1.732259 GGTGAACAGCCAGTACGAATG 59.268 52.381 0.00 0.00 0.00 2.67
2303 12600 1.623811 AGGTGAACAGCCAGTACGAAT 59.376 47.619 0.00 0.00 0.00 3.34
2304 12601 1.045407 AGGTGAACAGCCAGTACGAA 58.955 50.000 0.00 0.00 0.00 3.85
2466 12790 5.391312 AACTCCTGAAATTGCCATACAAC 57.609 39.130 0.00 0.00 42.27 3.32
2511 12835 8.682936 ACTCCTGAAATTATGTATCATTGACC 57.317 34.615 0.00 0.00 0.00 4.02
2522 12846 7.816031 AGCACATTCAAAACTCCTGAAATTATG 59.184 33.333 0.00 0.00 36.43 1.90
2523 12847 7.816031 CAGCACATTCAAAACTCCTGAAATTAT 59.184 33.333 0.00 0.00 36.43 1.28
2524 12848 7.147312 CAGCACATTCAAAACTCCTGAAATTA 58.853 34.615 0.00 0.00 36.43 1.40
2526 12850 5.069516 ACAGCACATTCAAAACTCCTGAAAT 59.930 36.000 0.00 0.00 36.43 2.17
2527 12851 4.402155 ACAGCACATTCAAAACTCCTGAAA 59.598 37.500 0.00 0.00 36.43 2.69
2529 12853 3.554934 ACAGCACATTCAAAACTCCTGA 58.445 40.909 0.00 0.00 0.00 3.86
2530 12854 3.996150 ACAGCACATTCAAAACTCCTG 57.004 42.857 0.00 0.00 0.00 3.86
2531 12855 4.402155 TGAAACAGCACATTCAAAACTCCT 59.598 37.500 0.00 0.00 32.89 3.69
2547 12893 4.913924 GCAGCATCTTGTAGTTTGAAACAG 59.086 41.667 11.02 0.00 0.00 3.16
2560 12906 1.654954 GCACTGGGAGCAGCATCTTG 61.655 60.000 0.00 0.00 0.00 3.02
2563 12909 1.676635 TTGCACTGGGAGCAGCATC 60.677 57.895 0.00 0.00 43.75 3.91
2739 16173 1.269936 ACAAATGAAAGCAGCCACAGC 60.270 47.619 0.00 0.00 40.32 4.40
2740 16174 2.034939 TGACAAATGAAAGCAGCCACAG 59.965 45.455 0.00 0.00 0.00 3.66
2741 16175 2.030371 TGACAAATGAAAGCAGCCACA 58.970 42.857 0.00 0.00 0.00 4.17
2742 16176 2.397549 GTGACAAATGAAAGCAGCCAC 58.602 47.619 0.00 0.00 0.00 5.01
3003 16445 3.366374 GCTTATTTCTTTGCCGCAGAAGT 60.366 43.478 12.20 5.74 31.84 3.01
3094 16568 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3095 16569 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
3096 16570 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
3097 16571 1.225991 CGTGTGTGTGTGTGTGTGC 60.226 57.895 0.00 0.00 0.00 4.57
3098 16572 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
3099 16573 1.375396 AGCGTGTGTGTGTGTGTGT 60.375 52.632 0.00 0.00 0.00 3.72
3100 16574 1.060779 CAGCGTGTGTGTGTGTGTG 59.939 57.895 0.00 0.00 0.00 3.82
3131 16605 0.809636 GTTGCCACAAAAGGGTGTGC 60.810 55.000 0.00 0.00 46.24 4.57
3227 16733 1.582610 CCAACTTGTTGGCGCCGTAT 61.583 55.000 23.90 0.08 35.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.