Multiple sequence alignment - TraesCS5D01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G331600 chr5D 100.000 7588 0 0 1 7588 422696010 422703597 0.000000e+00 14013.0
1 TraesCS5D01G331600 chr5D 87.811 845 75 15 2422 3252 386865853 386865023 0.000000e+00 965.0
2 TraesCS5D01G331600 chr5D 81.836 523 61 19 3179 3673 386864999 386864483 7.090000e-110 409.0
3 TraesCS5D01G331600 chr5D 81.868 182 26 6 1142 1316 394593840 394593659 6.140000e-31 147.0
4 TraesCS5D01G331600 chr5D 88.095 126 8 4 1306 1431 386866594 386866476 7.940000e-30 143.0
5 TraesCS5D01G331600 chr5D 88.764 89 5 1 1153 1241 386867748 386867665 3.750000e-18 104.0
6 TraesCS5D01G331600 chr5D 87.013 77 6 2 997 1073 394593946 394593874 4.880000e-12 84.2
7 TraesCS5D01G331600 chr5D 100.000 29 0 0 2097 2125 138465399 138465371 4.000000e-03 54.7
8 TraesCS5D01G331600 chr5D 100.000 28 0 0 2098 2125 498638217 498638244 1.400000e-02 52.8
9 TraesCS5D01G331600 chr5B 93.829 4732 191 50 14 4715 510293087 510297747 0.000000e+00 7027.0
10 TraesCS5D01G331600 chr5B 92.102 2874 147 39 4763 7587 510297742 510300584 0.000000e+00 3976.0
11 TraesCS5D01G331600 chr5B 86.627 845 85 16 2416 3248 474467844 474467016 0.000000e+00 909.0
12 TraesCS5D01G331600 chr5B 87.933 721 56 14 2545 3251 464894311 464893608 0.000000e+00 821.0
13 TraesCS5D01G331600 chr5B 81.310 519 71 17 3881 4391 474466225 474465725 1.530000e-106 398.0
14 TraesCS5D01G331600 chr5B 83.024 377 46 11 1721 2093 474468239 474467877 7.340000e-85 326.0
15 TraesCS5D01G331600 chr5B 79.151 518 66 22 3881 4391 428839948 428840430 3.420000e-83 320.0
16 TraesCS5D01G331600 chr5B 80.042 476 58 21 3228 3673 464893497 464893029 1.230000e-82 318.0
17 TraesCS5D01G331600 chr5B 80.097 412 51 24 1555 1946 464894925 464894525 2.090000e-70 278.0
18 TraesCS5D01G331600 chr5B 86.066 244 21 7 3186 3422 474466981 474466744 4.550000e-62 250.0
19 TraesCS5D01G331600 chr5B 84.848 99 10 4 1005 1103 474469023 474468930 2.250000e-15 95.3
20 TraesCS5D01G331600 chr5B 100.000 32 0 0 2094 2125 691153459 691153428 8.220000e-05 60.2
21 TraesCS5D01G331600 chr5B 96.875 32 0 1 2099 2130 691585915 691585885 1.400000e-02 52.8
22 TraesCS5D01G331600 chr5A 95.631 3342 83 29 3824 7126 536122152 536125469 0.000000e+00 5304.0
23 TraesCS5D01G331600 chr5A 94.910 3065 87 16 780 3827 536119028 536122040 0.000000e+00 4732.0
24 TraesCS5D01G331600 chr5A 86.223 871 79 22 2422 3267 488633652 488632798 0.000000e+00 905.0
25 TraesCS5D01G331600 chr5A 89.147 387 30 8 309 692 536118606 536118983 8.910000e-129 472.0
26 TraesCS5D01G331600 chr5A 81.524 525 57 27 3178 3673 488632785 488632272 5.520000e-106 396.0
27 TraesCS5D01G331600 chr5A 79.756 573 63 20 1450 1996 488637065 488636520 4.330000e-97 366.0
28 TraesCS5D01G331600 chr5A 90.476 231 15 3 7334 7561 536125642 536125868 1.600000e-76 298.0
29 TraesCS5D01G331600 chr5A 81.818 242 28 8 6072 6306 165330162 165330394 1.010000e-43 189.0
30 TraesCS5D01G331600 chr5A 85.311 177 24 2 1142 1316 496580084 496579908 1.680000e-41 182.0
31 TraesCS5D01G331600 chr5A 79.518 249 16 15 5539 5763 488629892 488629655 2.210000e-30 145.0
32 TraesCS5D01G331600 chr5A 87.368 95 10 1 5804 5898 488629436 488629344 2.900000e-19 108.0
33 TraesCS5D01G331600 chr5A 86.047 86 8 2 997 1082 496301832 496301751 1.050000e-13 89.8
34 TraesCS5D01G331600 chr5A 82.353 102 14 2 997 1098 496580190 496580093 1.360000e-12 86.1
35 TraesCS5D01G331600 chr5A 97.500 40 1 0 4403 4442 401142979 401142940 1.370000e-07 69.4
36 TraesCS5D01G331600 chr3A 87.544 851 77 17 2416 3248 677875450 677876289 0.000000e+00 957.0
37 TraesCS5D01G331600 chr3A 87.309 851 79 17 2416 3248 677880251 677881090 0.000000e+00 946.0
38 TraesCS5D01G331600 chr3A 87.356 87 9 2 1225 1310 677874599 677874684 1.740000e-16 99.0
39 TraesCS5D01G331600 chr3A 92.000 50 1 1 4385 4434 469835532 469835486 4.910000e-07 67.6
40 TraesCS5D01G331600 chr3D 86.854 852 81 22 2416 3248 542138213 542139052 0.000000e+00 924.0
41 TraesCS5D01G331600 chr3D 86.550 855 76 25 2416 3248 542130408 542131245 0.000000e+00 905.0
42 TraesCS5D01G331600 chrUn 83.069 189 26 5 1130 1316 300352077 300352261 4.710000e-37 167.0
43 TraesCS5D01G331600 chrUn 83.069 189 26 5 1130 1316 300356778 300356962 4.710000e-37 167.0
44 TraesCS5D01G331600 chrUn 83.069 189 26 5 1130 1316 313020456 313020640 4.710000e-37 167.0
45 TraesCS5D01G331600 chr2D 87.681 138 16 1 5257 5394 42776810 42776674 7.880000e-35 159.0
46 TraesCS5D01G331600 chr1D 76.190 336 59 18 7091 7417 457589706 457589383 2.830000e-34 158.0
47 TraesCS5D01G331600 chr1D 74.931 363 57 22 7067 7417 457637263 457636923 1.330000e-27 135.0
48 TraesCS5D01G331600 chr1D 74.852 338 60 20 7091 7417 457593340 457593017 6.180000e-26 130.0
49 TraesCS5D01G331600 chr1D 97.500 40 1 0 4403 4442 145938636 145938597 1.370000e-07 69.4
50 TraesCS5D01G331600 chr1B 75.602 332 57 18 7096 7417 627473387 627473070 7.940000e-30 143.0
51 TraesCS5D01G331600 chr1B 86.000 100 14 0 7318 7417 627460721 627460622 2.900000e-19 108.0
52 TraesCS5D01G331600 chr1B 97.500 40 1 0 4403 4442 194790518 194790479 1.370000e-07 69.4
53 TraesCS5D01G331600 chr3B 86.667 90 11 1 1225 1313 717690048 717690137 1.740000e-16 99.0
54 TraesCS5D01G331600 chr3B 86.364 88 11 1 1225 1311 717683387 717683474 2.250000e-15 95.3
55 TraesCS5D01G331600 chr7B 85.393 89 13 0 1170 1258 242678489 242678401 8.110000e-15 93.5
56 TraesCS5D01G331600 chr7A 92.157 51 3 1 4391 4441 589453502 589453453 3.800000e-08 71.3
57 TraesCS5D01G331600 chr1A 97.500 40 1 0 4403 4442 143815877 143815838 1.370000e-07 69.4
58 TraesCS5D01G331600 chr4D 88.679 53 5 1 4390 4441 202761451 202761399 6.360000e-06 63.9
59 TraesCS5D01G331600 chr7D 100.000 31 0 0 2099 2129 264746889 264746919 2.960000e-04 58.4
60 TraesCS5D01G331600 chr4B 100.000 31 0 0 2099 2129 496549132 496549102 2.960000e-04 58.4
61 TraesCS5D01G331600 chr2B 100.000 28 0 0 2098 2125 559178104 559178131 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G331600 chr5D 422696010 422703597 7587 False 14013.000000 14013 100.000000 1 7588 1 chr5D.!!$F1 7587
1 TraesCS5D01G331600 chr5D 386864483 386867748 3265 True 405.250000 965 86.626500 1153 3673 4 chr5D.!!$R2 2520
2 TraesCS5D01G331600 chr5B 510293087 510300584 7497 False 5501.500000 7027 92.965500 14 7587 2 chr5B.!!$F2 7573
3 TraesCS5D01G331600 chr5B 464893029 464894925 1896 True 472.333333 821 82.690667 1555 3673 3 chr5B.!!$R3 2118
4 TraesCS5D01G331600 chr5B 474465725 474469023 3298 True 395.660000 909 84.375000 1005 4391 5 chr5B.!!$R4 3386
5 TraesCS5D01G331600 chr5A 536118606 536125868 7262 False 2701.500000 5304 92.541000 309 7561 4 chr5A.!!$F2 7252
6 TraesCS5D01G331600 chr5A 488629344 488637065 7721 True 384.000000 905 82.877800 1450 5898 5 chr5A.!!$R3 4448
7 TraesCS5D01G331600 chr3A 677874599 677881090 6491 False 667.333333 957 87.403000 1225 3248 3 chr3A.!!$F1 2023
8 TraesCS5D01G331600 chr3D 542138213 542139052 839 False 924.000000 924 86.854000 2416 3248 1 chr3D.!!$F2 832
9 TraesCS5D01G331600 chr3D 542130408 542131245 837 False 905.000000 905 86.550000 2416 3248 1 chr3D.!!$F1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1021 0.179145 CGCACCCTTCGTCTAATCGT 60.179 55.000 0.00 0.00 0.00 3.73 F
1253 2406 1.681793 GCAGGTAAGTGGCGAGATCTA 59.318 52.381 0.00 0.00 0.00 1.98 F
2165 6192 0.105964 TGTGAAGTAGGCAGCGTTGT 59.894 50.000 0.00 0.00 0.00 3.32 F
2274 6301 0.685785 TCGATGCTGCCTCTCCTCTT 60.686 55.000 0.00 0.00 0.00 2.85 F
4155 13884 1.133167 ACAAAAAGGGCAGGCCTTACT 60.133 47.619 27.93 15.64 36.10 2.24 F
4847 15146 0.248012 CACCATGTGCAATGTGCCAT 59.752 50.000 0.00 0.00 44.23 4.40 F
4863 15162 0.606401 CCATTGTTGAGGCCGACTGT 60.606 55.000 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 3111 0.569349 GTACCTGCGCGTCGTTTATC 59.431 55.000 8.43 0.00 0.00 1.75 R
2698 6728 2.274948 TTAGATGCAGGCCCAGGCAG 62.275 60.000 17.82 3.43 44.24 4.85 R
4155 13884 0.476338 TTTAGCAACCTCCCTGCACA 59.524 50.000 0.00 0.00 42.48 4.57 R
4181 13910 9.198837 TCAAGACATGAATGATGAAAACATTTG 57.801 29.630 0.00 0.00 39.59 2.32 R
6083 16618 2.690881 CCCAATCCCCGTCCTCCA 60.691 66.667 0.00 0.00 0.00 3.86 R
6390 16927 0.179018 CCCAGGATCCATCGGGTTTC 60.179 60.000 20.73 0.00 33.67 2.78 R
6747 17296 1.930656 CCATGTCCCTGGTCCCCTT 60.931 63.158 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.971602 TCCAGATCTCTACATTCGATGTAAC 58.028 40.000 0.00 0.00 44.44 2.50
69 70 3.245122 CCTACCTTGTTTTGCCCCTAAGA 60.245 47.826 0.00 0.00 0.00 2.10
78 79 0.828022 TGCCCCTAAGACACATACGG 59.172 55.000 0.00 0.00 0.00 4.02
156 157 2.303022 TCCCAGTTTCTTCGAATCTGCT 59.697 45.455 0.00 0.00 0.00 4.24
172 173 4.006780 TCTGCTCATTCAACACAAGCTA 57.993 40.909 0.00 0.00 34.11 3.32
175 176 4.136796 TGCTCATTCAACACAAGCTAAGT 58.863 39.130 0.00 0.00 34.11 2.24
176 177 4.580167 TGCTCATTCAACACAAGCTAAGTT 59.420 37.500 0.00 0.00 34.11 2.66
177 178 4.913924 GCTCATTCAACACAAGCTAAGTTG 59.086 41.667 15.73 15.73 42.90 3.16
178 179 5.277974 GCTCATTCAACACAAGCTAAGTTGA 60.278 40.000 18.85 18.85 46.90 3.18
183 184 5.666462 TCAACACAAGCTAAGTTGAGTACA 58.334 37.500 18.85 3.46 44.60 2.90
184 185 6.110033 TCAACACAAGCTAAGTTGAGTACAA 58.890 36.000 18.85 2.91 44.60 2.41
185 186 6.596106 TCAACACAAGCTAAGTTGAGTACAAA 59.404 34.615 18.85 2.37 44.60 2.83
186 187 6.995511 ACACAAGCTAAGTTGAGTACAAAA 57.004 33.333 0.00 0.00 37.77 2.44
187 188 7.568199 ACACAAGCTAAGTTGAGTACAAAAT 57.432 32.000 0.00 0.00 37.77 1.82
188 189 7.996385 ACACAAGCTAAGTTGAGTACAAAATT 58.004 30.769 0.00 0.00 37.77 1.82
189 190 9.116067 ACACAAGCTAAGTTGAGTACAAAATTA 57.884 29.630 0.00 0.00 37.77 1.40
224 225 6.240894 ACAATGAGAGCTTTTCTTGGTATGA 58.759 36.000 0.00 0.00 35.87 2.15
225 226 6.888632 ACAATGAGAGCTTTTCTTGGTATGAT 59.111 34.615 0.00 0.00 35.87 2.45
249 252 8.015658 GATTGCTTAACTTTACAATGACGAAGT 58.984 33.333 0.00 0.00 36.66 3.01
267 270 1.450134 TCATCGCACATGAGCCACC 60.450 57.895 9.65 0.00 0.00 4.61
380 388 1.689813 TGACTAAGTTGGCTCCGTCAA 59.310 47.619 0.00 0.00 33.71 3.18
414 422 5.010719 ACGAAGATAATTAGGAATCGAGGCA 59.989 40.000 15.31 0.00 33.42 4.75
453 461 2.500098 ACCATATAGTGAGCACACCGTT 59.500 45.455 10.88 0.00 46.99 4.44
475 483 3.206964 GCTGGGTGCTATAAACCTTCTC 58.793 50.000 4.66 0.00 37.85 2.87
480 488 3.200165 GGTGCTATAAACCTTCTCCCAGT 59.800 47.826 0.00 0.00 34.66 4.00
532 543 2.932622 GCTGGATTTCTGAGTCAAGCGA 60.933 50.000 5.96 0.00 32.20 4.93
594 605 0.806884 ACGACTCGTTTTGACGGCAA 60.807 50.000 0.00 0.00 36.35 4.52
600 611 2.478894 CTCGTTTTGACGGCAATAGTGT 59.521 45.455 3.50 0.00 33.25 3.55
601 612 2.477375 TCGTTTTGACGGCAATAGTGTC 59.523 45.455 3.50 0.00 33.25 3.67
603 614 2.812011 GTTTTGACGGCAATAGTGTCCT 59.188 45.455 3.50 0.00 33.25 3.85
606 617 1.278238 GACGGCAATAGTGTCCTTCG 58.722 55.000 0.00 0.00 0.00 3.79
607 618 0.892755 ACGGCAATAGTGTCCTTCGA 59.107 50.000 0.00 0.00 0.00 3.71
753 766 4.702081 GCTCGTCGACACGGCAGT 62.702 66.667 17.16 0.00 46.70 4.40
754 767 2.050351 CTCGTCGACACGGCAGTT 60.050 61.111 17.16 0.00 46.70 3.16
755 768 2.354188 TCGTCGACACGGCAGTTG 60.354 61.111 17.16 0.00 46.70 3.16
756 769 3.403057 CGTCGACACGGCAGTTGG 61.403 66.667 17.16 0.00 42.73 3.77
757 770 3.041940 GTCGACACGGCAGTTGGG 61.042 66.667 11.55 0.00 0.00 4.12
758 771 3.228017 TCGACACGGCAGTTGGGA 61.228 61.111 0.00 0.00 0.00 4.37
759 772 3.041940 CGACACGGCAGTTGGGAC 61.042 66.667 0.00 0.00 0.00 4.46
990 1021 0.179145 CGCACCCTTCGTCTAATCGT 60.179 55.000 0.00 0.00 0.00 3.73
1061 1095 2.582436 CGCCGACCACAACCCTAT 59.418 61.111 0.00 0.00 0.00 2.57
1253 2406 1.681793 GCAGGTAAGTGGCGAGATCTA 59.318 52.381 0.00 0.00 0.00 1.98
1800 3030 1.948104 TTCGGGTCACTTCACAGTTG 58.052 50.000 0.00 0.00 0.00 3.16
1869 3111 0.749049 TGGAGCATGTCGAGGATCAG 59.251 55.000 0.00 0.00 33.17 2.90
2000 6023 4.377021 ACCGATAGCGATGCTTATTTTGA 58.623 39.130 0.00 0.00 40.44 2.69
2129 6156 4.525912 TTGGAACGAAGGGAGTAGTAAC 57.474 45.455 0.00 0.00 0.00 2.50
2165 6192 0.105964 TGTGAAGTAGGCAGCGTTGT 59.894 50.000 0.00 0.00 0.00 3.32
2240 6267 1.771854 TGGTTGTTGAAGGGAGTGCTA 59.228 47.619 0.00 0.00 0.00 3.49
2274 6301 0.685785 TCGATGCTGCCTCTCCTCTT 60.686 55.000 0.00 0.00 0.00 2.85
2351 6378 4.448210 GTGTTCTAACCTCAGGTTTGACA 58.552 43.478 19.10 16.43 44.33 3.58
2534 6563 3.428746 TGTGTTCGTTCAAATTGTGGG 57.571 42.857 0.00 0.00 0.00 4.61
2543 6572 4.808364 CGTTCAAATTGTGGGATTGTGTTT 59.192 37.500 0.00 0.00 0.00 2.83
2544 6573 5.293079 CGTTCAAATTGTGGGATTGTGTTTT 59.707 36.000 0.00 0.00 0.00 2.43
2545 6574 6.183360 CGTTCAAATTGTGGGATTGTGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
2570 6599 2.811431 TCATACTTGTTGAAACCAGCCG 59.189 45.455 0.00 0.00 0.00 5.52
2698 6728 7.315247 AGTTGTTTTTGTTTATTCCCTTTGC 57.685 32.000 0.00 0.00 0.00 3.68
2762 6800 3.274288 GTTCTAGCCATGGTTTCAGGAG 58.726 50.000 14.67 0.91 0.00 3.69
2789 6827 1.202348 GCATTGGGTGAAGTAGTTGGC 59.798 52.381 0.00 0.00 0.00 4.52
3460 12399 8.657074 TTGGAAGAGGTATGTCGTAATAATTG 57.343 34.615 0.00 0.00 0.00 2.32
3595 12643 2.816087 TGTGCCTCTGAGCATTTTCTTC 59.184 45.455 0.00 0.00 46.24 2.87
3710 12758 6.942576 ACTCAGAATGTTGCTAATTACCAACT 59.057 34.615 19.48 5.51 41.34 3.16
3834 13548 7.603784 AGCTTTTGGCCTTCAAGTATAAAATTG 59.396 33.333 3.32 0.00 43.05 2.32
4049 13778 8.581578 TGGTTTACCAAACTAGAATTCATTTCC 58.418 33.333 8.44 3.03 44.35 3.13
4109 13838 2.165030 CCTTTGAATTGTAGCCAGCCAG 59.835 50.000 0.00 0.00 0.00 4.85
4155 13884 1.133167 ACAAAAAGGGCAGGCCTTACT 60.133 47.619 27.93 15.64 36.10 2.24
4644 14936 2.481441 AGGGCAGAGACACAATGGATA 58.519 47.619 0.00 0.00 0.00 2.59
4847 15146 0.248012 CACCATGTGCAATGTGCCAT 59.752 50.000 0.00 0.00 44.23 4.40
4863 15162 0.606401 CCATTGTTGAGGCCGACTGT 60.606 55.000 0.00 0.00 0.00 3.55
4998 15297 3.922850 GTCGCACGATGATGATATGATGT 59.077 43.478 0.00 0.00 0.00 3.06
5131 15430 8.373048 TCAAGTTGAACGTACATTTGATACTT 57.627 30.769 2.20 0.00 0.00 2.24
5303 15602 8.897752 GCAGGAAGTTAACAATTCTCAGATTAT 58.102 33.333 8.61 0.00 0.00 1.28
5499 15798 3.416351 GGCACCCTAAGGCCTTCT 58.584 61.111 24.49 0.27 46.74 2.85
5679 16001 4.465632 TGTAGAAAGAGCATCGCCTTTA 57.534 40.909 0.00 0.00 42.67 1.85
5775 16106 8.099364 AGGTAATTCAAGTTGTTGTCATGTAG 57.901 34.615 2.11 0.00 34.98 2.74
5876 16385 4.574674 TCTTGTTGATCCCATGTTAGCT 57.425 40.909 0.00 0.00 0.00 3.32
5939 16468 6.726258 TGCAGTTGTATTTGATGAGTAGTG 57.274 37.500 0.00 0.00 0.00 2.74
6016 16545 7.949690 ATAACCATAAAAGGGTAAGAACACC 57.050 36.000 0.00 0.00 37.77 4.16
6083 16618 1.597461 GAAGTTAGGAGTGGCGGCT 59.403 57.895 11.43 0.00 0.00 5.52
6136 16671 3.258872 TGGGAAAACATTCATTGGCAGAG 59.741 43.478 0.00 0.00 0.00 3.35
6158 16693 1.067295 TCAGATTGACTGGCTGGGTT 58.933 50.000 0.00 0.00 45.76 4.11
6161 16696 1.145738 AGATTGACTGGCTGGGTTGTT 59.854 47.619 0.00 0.00 0.00 2.83
6214 16749 7.962964 TGTATGAATCGAATACTTTCCCATC 57.037 36.000 7.15 0.00 32.70 3.51
6343 16880 4.898861 TCTTTCACAAACCAAAATAGGGCT 59.101 37.500 0.00 0.00 0.00 5.19
6390 16927 5.059587 CGCTATTGCATTTTGTGTGTGTTAG 59.940 40.000 0.00 0.00 39.64 2.34
6658 17206 1.686355 CCAGTTGTTGGCACTTGGTA 58.314 50.000 0.00 0.00 40.87 3.25
6660 17208 1.608590 CAGTTGTTGGCACTTGGTAGG 59.391 52.381 0.00 0.00 0.00 3.18
6661 17209 1.493022 AGTTGTTGGCACTTGGTAGGA 59.507 47.619 0.00 0.00 0.00 2.94
6662 17210 1.880027 GTTGTTGGCACTTGGTAGGAG 59.120 52.381 0.00 0.00 0.00 3.69
6663 17211 1.136828 TGTTGGCACTTGGTAGGAGT 58.863 50.000 0.00 0.00 0.00 3.85
6664 17212 2.331166 TGTTGGCACTTGGTAGGAGTA 58.669 47.619 0.00 0.00 0.00 2.59
6665 17213 2.910319 TGTTGGCACTTGGTAGGAGTAT 59.090 45.455 0.00 0.00 0.00 2.12
6666 17214 3.055385 TGTTGGCACTTGGTAGGAGTATC 60.055 47.826 0.00 0.00 0.00 2.24
6727 17275 0.606604 CCAAAGCAAGGCAGCAGAAT 59.393 50.000 4.78 0.00 36.85 2.40
6747 17296 7.639039 CAGAATTTCTACAGTACAAACTTGCA 58.361 34.615 0.00 0.00 31.97 4.08
6770 17319 1.639635 GGACCAGGGACATGGAGCAT 61.640 60.000 10.30 0.00 43.57 3.79
6798 17347 3.207669 CCTTGCCGCTGATGCTCC 61.208 66.667 0.00 0.00 36.97 4.70
6934 17486 3.771479 TGGAGCTAGATATGCAGTATGGG 59.229 47.826 0.00 0.00 35.86 4.00
7053 17605 6.542005 TGATTGGTCGTGCATTATTTAGATGT 59.458 34.615 0.00 0.00 0.00 3.06
7127 17692 9.450807 AATGCAGATTTATTTTGATAAGTACGC 57.549 29.630 0.00 0.00 0.00 4.42
7129 17694 8.620416 TGCAGATTTATTTTGATAAGTACGCAT 58.380 29.630 0.00 0.00 0.00 4.73
7164 17729 2.240493 AATAAGGTCCTCGGCGATTG 57.760 50.000 11.27 4.98 0.00 2.67
7177 17742 2.093152 CGGCGATTGTATAAATACCGGC 59.907 50.000 0.00 11.23 37.67 6.13
7179 17744 2.988493 GCGATTGTATAAATACCGGCGA 59.012 45.455 9.30 0.00 32.33 5.54
7180 17745 3.060363 GCGATTGTATAAATACCGGCGAG 59.940 47.826 9.30 0.06 32.33 5.03
7181 17746 4.232221 CGATTGTATAAATACCGGCGAGT 58.768 43.478 9.30 7.43 32.33 4.18
7182 17747 4.682860 CGATTGTATAAATACCGGCGAGTT 59.317 41.667 9.30 0.00 32.33 3.01
7198 17763 3.712187 CGAGTTCCTTCTAATCAGAGCC 58.288 50.000 0.00 0.00 30.73 4.70
7201 17766 2.505819 GTTCCTTCTAATCAGAGCCCCA 59.494 50.000 0.00 0.00 30.73 4.96
7213 17778 3.443045 GCCCCACATCGGCACAAG 61.443 66.667 0.00 0.00 46.27 3.16
7221 17786 3.440173 CCACATCGGCACAAGTTTAATCT 59.560 43.478 0.00 0.00 0.00 2.40
7222 17787 4.437390 CCACATCGGCACAAGTTTAATCTC 60.437 45.833 0.00 0.00 0.00 2.75
7223 17788 4.154015 CACATCGGCACAAGTTTAATCTCA 59.846 41.667 0.00 0.00 0.00 3.27
7224 17789 4.154195 ACATCGGCACAAGTTTAATCTCAC 59.846 41.667 0.00 0.00 0.00 3.51
7225 17790 3.734463 TCGGCACAAGTTTAATCTCACA 58.266 40.909 0.00 0.00 0.00 3.58
7227 17792 4.024387 TCGGCACAAGTTTAATCTCACAAC 60.024 41.667 0.00 0.00 0.00 3.32
7228 17793 4.024048 CGGCACAAGTTTAATCTCACAACT 60.024 41.667 0.00 0.00 31.90 3.16
7229 17794 5.452777 GGCACAAGTTTAATCTCACAACTC 58.547 41.667 0.00 0.00 30.22 3.01
7230 17795 5.008613 GGCACAAGTTTAATCTCACAACTCA 59.991 40.000 0.00 0.00 30.22 3.41
7231 17796 6.138761 GCACAAGTTTAATCTCACAACTCAG 58.861 40.000 0.00 0.00 30.22 3.35
7233 17798 7.348201 CACAAGTTTAATCTCACAACTCAGTC 58.652 38.462 0.00 0.00 30.22 3.51
7238 17811 3.567576 ATCTCACAACTCAGTCTCGTG 57.432 47.619 0.00 0.00 0.00 4.35
7273 17846 1.349067 AACTACCAGCCTCGGAGTTT 58.651 50.000 4.02 0.00 0.00 2.66
7274 17847 0.896226 ACTACCAGCCTCGGAGTTTC 59.104 55.000 4.02 0.00 0.00 2.78
7275 17848 1.187087 CTACCAGCCTCGGAGTTTCT 58.813 55.000 4.02 0.00 0.00 2.52
7276 17849 1.135333 CTACCAGCCTCGGAGTTTCTC 59.865 57.143 4.02 0.00 0.00 2.87
7277 17850 0.832135 ACCAGCCTCGGAGTTTCTCA 60.832 55.000 4.02 0.00 31.08 3.27
7278 17851 0.390472 CCAGCCTCGGAGTTTCTCAC 60.390 60.000 4.02 0.00 31.08 3.51
7279 17852 0.318441 CAGCCTCGGAGTTTCTCACA 59.682 55.000 4.02 0.00 31.08 3.58
7280 17853 1.048601 AGCCTCGGAGTTTCTCACAA 58.951 50.000 4.02 0.00 31.08 3.33
7281 17854 1.149148 GCCTCGGAGTTTCTCACAAC 58.851 55.000 4.02 0.00 31.08 3.32
7282 17855 1.270358 GCCTCGGAGTTTCTCACAACT 60.270 52.381 4.02 0.00 39.84 3.16
7306 17884 5.817816 TCAGTTTTCTCGCTTTTTCTCTCTT 59.182 36.000 0.00 0.00 0.00 2.85
7324 17912 1.398390 CTTGCAAACGAGCCAGGTATC 59.602 52.381 0.00 0.00 0.00 2.24
7337 17925 3.054655 GCCAGGTATCTTGGGTTTGTAGA 60.055 47.826 0.47 0.00 0.00 2.59
7382 17970 2.147958 TGGTCCGTGCAAAGTTCATAC 58.852 47.619 0.00 0.00 0.00 2.39
7448 18039 1.131303 AACCCCAACGAGGACATGGA 61.131 55.000 0.00 0.00 41.22 3.41
7498 18089 0.026285 CGTTAGCGAAAATCAGGCCG 59.974 55.000 0.00 0.00 41.33 6.13
7553 18144 0.752009 TCTTCGGCTATCGGCAGAGT 60.752 55.000 0.00 0.00 45.00 3.24
7587 18178 1.001746 AGGGCATCGTATGAGCATCTG 59.998 52.381 8.14 0.00 34.92 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.130350 AGGTGTAGCGGTATTAATTTGCAT 58.870 37.500 0.00 0.00 0.00 3.96
1 2 4.519213 AGGTGTAGCGGTATTAATTTGCA 58.481 39.130 0.00 0.00 0.00 4.08
2 3 4.024302 GGAGGTGTAGCGGTATTAATTTGC 60.024 45.833 0.00 0.00 0.00 3.68
3 4 5.120399 TGGAGGTGTAGCGGTATTAATTTG 58.880 41.667 0.00 0.00 0.00 2.32
4 5 5.129815 TCTGGAGGTGTAGCGGTATTAATTT 59.870 40.000 0.00 0.00 0.00 1.82
5 6 4.652421 TCTGGAGGTGTAGCGGTATTAATT 59.348 41.667 0.00 0.00 0.00 1.40
6 7 4.220724 TCTGGAGGTGTAGCGGTATTAAT 58.779 43.478 0.00 0.00 0.00 1.40
7 8 3.634504 TCTGGAGGTGTAGCGGTATTAA 58.365 45.455 0.00 0.00 0.00 1.40
8 9 3.301794 TCTGGAGGTGTAGCGGTATTA 57.698 47.619 0.00 0.00 0.00 0.98
9 10 2.154567 TCTGGAGGTGTAGCGGTATT 57.845 50.000 0.00 0.00 0.00 1.89
10 11 2.158445 AGATCTGGAGGTGTAGCGGTAT 60.158 50.000 0.00 0.00 0.00 2.73
11 12 1.214673 AGATCTGGAGGTGTAGCGGTA 59.785 52.381 0.00 0.00 0.00 4.02
12 13 0.033011 AGATCTGGAGGTGTAGCGGT 60.033 55.000 0.00 0.00 0.00 5.68
21 22 4.522405 ACATCGAATGTAGAGATCTGGAGG 59.478 45.833 0.00 0.00 42.78 4.30
47 48 2.891191 TAGGGGCAAAACAAGGTAGG 57.109 50.000 0.00 0.00 0.00 3.18
69 70 1.262640 GGTCCACCTCCCGTATGTGT 61.263 60.000 0.00 0.00 0.00 3.72
78 79 4.101448 ATGCAGCGGTCCACCTCC 62.101 66.667 0.00 0.00 0.00 4.30
156 157 5.822519 ACTCAACTTAGCTTGTGTTGAATGA 59.177 36.000 20.98 8.66 45.92 2.57
189 190 9.905171 GAAAAGCTCTCATTGTTTCTCTAAAAT 57.095 29.630 0.00 0.00 0.00 1.82
190 191 9.125026 AGAAAAGCTCTCATTGTTTCTCTAAAA 57.875 29.630 2.20 0.00 34.27 1.52
191 192 8.682936 AGAAAAGCTCTCATTGTTTCTCTAAA 57.317 30.769 2.20 0.00 34.27 1.85
192 193 8.562892 CAAGAAAAGCTCTCATTGTTTCTCTAA 58.437 33.333 7.56 0.00 37.51 2.10
193 194 7.173907 CCAAGAAAAGCTCTCATTGTTTCTCTA 59.826 37.037 7.56 0.00 37.51 2.43
194 195 6.016443 CCAAGAAAAGCTCTCATTGTTTCTCT 60.016 38.462 7.56 0.00 37.51 3.10
195 196 6.148264 CCAAGAAAAGCTCTCATTGTTTCTC 58.852 40.000 7.56 0.00 37.51 2.87
196 197 5.595952 ACCAAGAAAAGCTCTCATTGTTTCT 59.404 36.000 2.20 2.20 39.58 2.52
197 198 5.836347 ACCAAGAAAAGCTCTCATTGTTTC 58.164 37.500 0.00 0.00 31.02 2.78
224 225 7.871853 ACTTCGTCATTGTAAAGTTAAGCAAT 58.128 30.769 0.00 0.00 32.48 3.56
225 226 7.011576 TGACTTCGTCATTGTAAAGTTAAGCAA 59.988 33.333 0.00 0.00 37.67 3.91
249 252 1.450134 GGTGGCTCATGTGCGATGA 60.450 57.895 13.22 0.00 0.00 2.92
250 253 1.099295 ATGGTGGCTCATGTGCGATG 61.099 55.000 13.22 0.00 0.00 3.84
253 256 1.138036 CAATGGTGGCTCATGTGCG 59.862 57.895 13.22 0.00 0.00 5.34
407 415 1.731613 CGTTGCGTACTTGCCTCGA 60.732 57.895 0.00 0.00 33.87 4.04
414 422 3.391965 TGGTTGTTATCGTTGCGTACTT 58.608 40.909 0.00 0.00 0.00 2.24
475 483 5.063204 TGATCGGCAGATAATTAAACTGGG 58.937 41.667 18.21 2.50 37.19 4.45
480 488 8.902806 ACAATCTTTGATCGGCAGATAATTAAA 58.097 29.630 0.00 0.00 37.19 1.52
532 543 5.338789 GCTCCTTTACCAGAGAAGAAGGAAT 60.339 44.000 4.86 0.00 43.68 3.01
594 605 2.657143 GAGACCCTCGAAGGACACTAT 58.343 52.381 7.17 0.00 37.67 2.12
606 617 5.263968 TGTATCAAGATTTCGAGACCCTC 57.736 43.478 0.00 0.00 0.00 4.30
607 618 5.677319 TTGTATCAAGATTTCGAGACCCT 57.323 39.130 0.00 0.00 0.00 4.34
705 718 0.799393 GCTCGAAGCAGGAGAAAACC 59.201 55.000 3.23 0.00 41.89 3.27
748 761 1.303643 CTCCCAAGTCCCAACTGCC 60.304 63.158 0.00 0.00 35.36 4.85
753 766 1.278127 GAACGATCTCCCAAGTCCCAA 59.722 52.381 0.00 0.00 0.00 4.12
754 767 0.902531 GAACGATCTCCCAAGTCCCA 59.097 55.000 0.00 0.00 0.00 4.37
755 768 0.179108 CGAACGATCTCCCAAGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
756 769 0.179108 CCGAACGATCTCCCAAGTCC 60.179 60.000 0.00 0.00 0.00 3.85
757 770 0.806492 GCCGAACGATCTCCCAAGTC 60.806 60.000 0.00 0.00 0.00 3.01
758 771 1.218316 GCCGAACGATCTCCCAAGT 59.782 57.895 0.00 0.00 0.00 3.16
759 772 1.521681 GGCCGAACGATCTCCCAAG 60.522 63.158 0.00 0.00 0.00 3.61
909 938 7.067737 GGTCTGGTAAAAATAATGGATCGGAAA 59.932 37.037 0.00 0.00 0.00 3.13
912 941 5.240844 GGGTCTGGTAAAAATAATGGATCGG 59.759 44.000 0.00 0.00 0.00 4.18
1511 2717 0.109551 CGAGATCATCGTCCCCATCG 60.110 60.000 0.00 0.00 46.62 3.84
1869 3111 0.569349 GTACCTGCGCGTCGTTTATC 59.431 55.000 8.43 0.00 0.00 1.75
2165 6192 4.507710 CTCTAGCAAAGAGTGGTATGCAA 58.492 43.478 7.72 0.00 45.85 4.08
2193 6220 3.525199 ACTCTAAATCCCTCCAGCACAAT 59.475 43.478 0.00 0.00 0.00 2.71
2274 6301 2.573869 CTCTCCCGAGCGAGCAAA 59.426 61.111 0.00 0.00 0.00 3.68
2520 6549 3.976169 ACACAATCCCACAATTTGAACG 58.024 40.909 2.79 0.00 0.00 3.95
2545 6574 6.045955 GGCTGGTTTCAACAAGTATGAAAAA 58.954 36.000 3.51 0.00 45.43 1.94
2549 6578 2.811431 CGGCTGGTTTCAACAAGTATGA 59.189 45.455 0.00 0.00 32.36 2.15
2551 6580 3.134574 TCGGCTGGTTTCAACAAGTAT 57.865 42.857 0.00 0.00 32.36 2.12
2698 6728 2.274948 TTAGATGCAGGCCCAGGCAG 62.275 60.000 17.82 3.43 44.24 4.85
2762 6800 4.760204 ACTACTTCACCCAATGCAACTAAC 59.240 41.667 0.00 0.00 0.00 2.34
3184 7250 7.232737 AGGTACAAAGGAACCCTAAATTTTCTG 59.767 37.037 0.00 0.00 36.34 3.02
3460 12399 7.767198 TGTAGCCAAAATGGATGTACTACTAAC 59.233 37.037 0.00 0.00 40.96 2.34
3595 12643 4.082125 AGATACTGAAGCCCAAACAAAGG 58.918 43.478 0.00 0.00 0.00 3.11
3710 12758 2.695359 GTTTCCGGTGCATAACTGAGA 58.305 47.619 0.00 0.00 37.33 3.27
3995 13724 9.806448 TTATGCCTCATTATTTCCTGCTTTATA 57.194 29.630 0.00 0.00 0.00 0.98
4049 13778 9.971922 AATTTCTCAACAAGAATGTCCTTTTAG 57.028 29.630 0.00 0.00 43.50 1.85
4109 13838 7.270779 AGTAAGGGATACAACTTATCCGAAAC 58.729 38.462 4.58 3.09 43.35 2.78
4142 13871 2.751837 GCACAGTAAGGCCTGCCC 60.752 66.667 5.69 0.00 35.83 5.36
4155 13884 0.476338 TTTAGCAACCTCCCTGCACA 59.524 50.000 0.00 0.00 42.48 4.57
4181 13910 9.198837 TCAAGACATGAATGATGAAAACATTTG 57.801 29.630 0.00 0.00 39.59 2.32
4626 14918 4.265073 ACTTTATCCATTGTGTCTCTGCC 58.735 43.478 0.00 0.00 0.00 4.85
4847 15146 0.179234 TGAACAGTCGGCCTCAACAA 59.821 50.000 0.00 0.00 0.00 2.83
4863 15162 2.166050 CGCCCAACATTTCCATCATGAA 59.834 45.455 0.00 0.00 0.00 2.57
4998 15297 3.041211 CCTCTGTGATCCTGGTTATCCA 58.959 50.000 0.00 0.00 42.05 3.41
5131 15430 5.499004 AAATGTTCAGGTGTTAGCTCCTA 57.501 39.130 0.00 0.00 36.54 2.94
5508 15807 5.357257 TCGGATAAGGTGCATTTCTTACTC 58.643 41.667 8.58 7.93 0.00 2.59
5876 16385 8.650143 TCATGCTAGTGTGTATATAATCCTCA 57.350 34.615 0.00 0.00 0.00 3.86
5939 16468 4.040445 ACAAGTGCATTGGTTGTTGTAC 57.960 40.909 11.76 0.00 43.68 2.90
5993 16522 6.850234 TGGTGTTCTTACCCTTTTATGGTTA 58.150 36.000 0.00 0.00 40.09 2.85
5994 16523 5.707495 TGGTGTTCTTACCCTTTTATGGTT 58.293 37.500 0.00 0.00 40.09 3.67
6016 16545 4.342772 GTGCCATTCGTTAAACTGCTATG 58.657 43.478 0.00 0.00 0.00 2.23
6083 16618 2.690881 CCCAATCCCCGTCCTCCA 60.691 66.667 0.00 0.00 0.00 3.86
6158 16693 6.797454 ACGCATTTTCTTTTACCACTAAACA 58.203 32.000 0.00 0.00 0.00 2.83
6161 16696 7.577979 CAGTACGCATTTTCTTTTACCACTAA 58.422 34.615 0.00 0.00 0.00 2.24
6214 16749 1.946768 ACCACATCACTCGTGTTTTGG 59.053 47.619 10.30 10.30 32.26 3.28
6343 16880 0.696143 TCTCCAACCCCACTGGACAA 60.696 55.000 0.00 0.00 38.07 3.18
6390 16927 0.179018 CCCAGGATCCATCGGGTTTC 60.179 60.000 20.73 0.00 33.67 2.78
6658 17206 4.073549 GCCACTACATACTCGATACTCCT 58.926 47.826 0.00 0.00 0.00 3.69
6660 17208 5.181433 TGATGCCACTACATACTCGATACTC 59.819 44.000 0.00 0.00 0.00 2.59
6661 17209 5.070685 TGATGCCACTACATACTCGATACT 58.929 41.667 0.00 0.00 0.00 2.12
6662 17210 5.372547 TGATGCCACTACATACTCGATAC 57.627 43.478 0.00 0.00 0.00 2.24
6663 17211 6.434340 AGAATGATGCCACTACATACTCGATA 59.566 38.462 0.00 0.00 0.00 2.92
6664 17212 5.244851 AGAATGATGCCACTACATACTCGAT 59.755 40.000 0.00 0.00 0.00 3.59
6665 17213 4.584743 AGAATGATGCCACTACATACTCGA 59.415 41.667 0.00 0.00 0.00 4.04
6666 17214 4.876125 AGAATGATGCCACTACATACTCG 58.124 43.478 0.00 0.00 0.00 4.18
6727 17275 5.298276 CCCTTGCAAGTTTGTACTGTAGAAA 59.702 40.000 24.35 6.08 34.01 2.52
6747 17296 1.930656 CCATGTCCCTGGTCCCCTT 60.931 63.158 0.00 0.00 0.00 3.95
6798 17347 3.602915 GTGTACAAGAGTAAGAGAACGCG 59.397 47.826 3.53 3.53 30.67 6.01
7153 17718 3.611113 CGGTATTTATACAATCGCCGAGG 59.389 47.826 0.00 0.00 40.27 4.63
7164 17729 4.248691 AGGAACTCGCCGGTATTTATAC 57.751 45.455 1.90 0.00 0.00 1.47
7177 17742 3.491792 GGGCTCTGATTAGAAGGAACTCG 60.492 52.174 0.00 0.00 38.49 4.18
7180 17745 2.505819 TGGGGCTCTGATTAGAAGGAAC 59.494 50.000 0.00 0.00 31.21 3.62
7181 17746 2.505819 GTGGGGCTCTGATTAGAAGGAA 59.494 50.000 0.00 0.00 31.21 3.36
7182 17747 2.119495 GTGGGGCTCTGATTAGAAGGA 58.881 52.381 0.00 0.00 31.21 3.36
7198 17763 1.529226 TAAACTTGTGCCGATGTGGG 58.471 50.000 0.00 0.00 38.63 4.61
7201 17766 4.154195 GTGAGATTAAACTTGTGCCGATGT 59.846 41.667 0.00 0.00 0.00 3.06
7210 17775 7.358765 CGAGACTGAGTTGTGAGATTAAACTTG 60.359 40.741 0.00 0.00 34.37 3.16
7213 17778 5.921408 ACGAGACTGAGTTGTGAGATTAAAC 59.079 40.000 0.00 0.00 0.00 2.01
7221 17786 3.793797 TTTCACGAGACTGAGTTGTGA 57.206 42.857 10.77 10.77 37.76 3.58
7222 17787 4.857871 TTTTTCACGAGACTGAGTTGTG 57.142 40.909 7.09 7.09 0.00 3.33
7252 17825 0.896226 ACTCCGAGGCTGGTAGTTTC 59.104 55.000 0.00 0.00 0.00 2.78
7259 17832 0.390472 GTGAGAAACTCCGAGGCTGG 60.390 60.000 0.00 0.00 0.00 4.85
7263 17836 2.678324 GAGTTGTGAGAAACTCCGAGG 58.322 52.381 5.91 0.00 46.88 4.63
7273 17846 3.123804 GCGAGAAAACTGAGTTGTGAGA 58.876 45.455 0.00 0.00 0.00 3.27
7274 17847 3.126831 AGCGAGAAAACTGAGTTGTGAG 58.873 45.455 0.00 0.00 0.00 3.51
7275 17848 3.179443 AGCGAGAAAACTGAGTTGTGA 57.821 42.857 0.00 0.00 0.00 3.58
7276 17849 3.951979 AAGCGAGAAAACTGAGTTGTG 57.048 42.857 0.00 0.00 0.00 3.33
7277 17850 4.965119 AAAAGCGAGAAAACTGAGTTGT 57.035 36.364 0.00 0.00 0.00 3.32
7278 17851 5.573146 AGAAAAAGCGAGAAAACTGAGTTG 58.427 37.500 0.00 0.00 0.00 3.16
7279 17852 5.586643 AGAGAAAAAGCGAGAAAACTGAGTT 59.413 36.000 0.00 0.00 0.00 3.01
7280 17853 5.119694 AGAGAAAAAGCGAGAAAACTGAGT 58.880 37.500 0.00 0.00 0.00 3.41
7281 17854 5.465056 AGAGAGAAAAAGCGAGAAAACTGAG 59.535 40.000 0.00 0.00 0.00 3.35
7282 17855 5.360591 AGAGAGAAAAAGCGAGAAAACTGA 58.639 37.500 0.00 0.00 0.00 3.41
7283 17856 5.665381 AGAGAGAAAAAGCGAGAAAACTG 57.335 39.130 0.00 0.00 0.00 3.16
7284 17857 5.504830 GCAAGAGAGAAAAAGCGAGAAAACT 60.505 40.000 0.00 0.00 0.00 2.66
7285 17858 4.672862 GCAAGAGAGAAAAAGCGAGAAAAC 59.327 41.667 0.00 0.00 0.00 2.43
7286 17859 4.335315 TGCAAGAGAGAAAAAGCGAGAAAA 59.665 37.500 0.00 0.00 0.00 2.29
7287 17860 3.876914 TGCAAGAGAGAAAAAGCGAGAAA 59.123 39.130 0.00 0.00 0.00 2.52
7306 17884 0.613260 AGATACCTGGCTCGTTTGCA 59.387 50.000 0.00 0.00 34.04 4.08
7324 17912 1.743394 GCGGGAATCTACAAACCCAAG 59.257 52.381 0.00 0.00 42.16 3.61
7337 17925 1.956629 ATCACGAGAACGGCGGGAAT 61.957 55.000 13.24 0.00 45.12 3.01
7426 18017 2.356741 CCATGTCCTCGTTGGGGTTATT 60.357 50.000 0.00 0.00 36.20 1.40
7427 18018 1.211949 CCATGTCCTCGTTGGGGTTAT 59.788 52.381 0.00 0.00 36.20 1.89
7498 18089 2.034221 AAGGGGGTTGCTTCGCTC 59.966 61.111 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.