Multiple sequence alignment - TraesCS5D01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G331200 chr5D 100.000 2615 0 0 1 2615 422419218 422421832 0.000000e+00 4830.0
1 TraesCS5D01G331200 chr5D 83.847 1201 90 41 668 1832 422436643 422437775 0.000000e+00 1048.0
2 TraesCS5D01G331200 chr5D 94.872 39 2 0 548 586 293374963 293374925 7.810000e-06 62.1
3 TraesCS5D01G331200 chr5A 93.846 1300 29 14 563 1856 535653202 535654456 0.000000e+00 1910.0
4 TraesCS5D01G331200 chr5A 84.689 1143 79 38 667 1789 535674005 535675071 0.000000e+00 1053.0
5 TraesCS5D01G331200 chr5B 93.516 1311 39 15 584 1861 509171686 509172983 0.000000e+00 1908.0
6 TraesCS5D01G331200 chr5B 84.825 1173 82 46 688 1832 509190896 509192000 0.000000e+00 1092.0
7 TraesCS5D01G331200 chr5B 87.159 623 65 7 2004 2615 509172960 509173578 0.000000e+00 693.0
8 TraesCS5D01G331200 chr5B 84.475 438 56 6 1 427 509170796 509171232 3.110000e-114 422.0
9 TraesCS5D01G331200 chr5B 89.209 139 15 0 1861 1999 472663125 472662987 9.620000e-40 174.0
10 TraesCS5D01G331200 chr5B 92.308 39 3 0 541 579 69813136 69813098 3.640000e-04 56.5
11 TraesCS5D01G331200 chr7D 90.972 144 13 0 1857 2000 156813521 156813378 7.380000e-46 195.0
12 TraesCS5D01G331200 chr7D 91.111 45 4 0 541 585 349909246 349909290 7.810000e-06 62.1
13 TraesCS5D01G331200 chr7D 90.698 43 3 1 545 586 613134504 613134546 3.640000e-04 56.5
14 TraesCS5D01G331200 chr2B 90.000 150 15 0 1853 2002 288971912 288972061 7.380000e-46 195.0
15 TraesCS5D01G331200 chr2B 89.286 140 14 1 1862 2000 732348470 732348331 9.620000e-40 174.0
16 TraesCS5D01G331200 chr4D 91.367 139 12 0 1862 2000 469430901 469431039 9.550000e-45 191.0
17 TraesCS5D01G331200 chr2D 89.655 145 15 0 1862 2006 602111635 602111491 4.440000e-43 185.0
18 TraesCS5D01G331200 chr2D 89.655 145 15 0 1862 2006 602137833 602137689 4.440000e-43 185.0
19 TraesCS5D01G331200 chr2D 88.966 145 16 0 1862 2006 602084318 602084174 2.070000e-41 180.0
20 TraesCS5D01G331200 chr2D 88.966 145 16 0 1862 2006 602182022 602181878 2.070000e-41 180.0
21 TraesCS5D01G331200 chr6B 97.222 36 1 0 545 580 29697795 29697760 7.810000e-06 62.1
22 TraesCS5D01G331200 chr3A 91.111 45 4 0 541 585 714435848 714435804 7.810000e-06 62.1
23 TraesCS5D01G331200 chr3A 97.059 34 1 0 541 574 729514171 729514204 1.010000e-04 58.4
24 TraesCS5D01G331200 chrUn 92.308 39 3 0 548 586 176753858 176753820 3.640000e-04 56.5
25 TraesCS5D01G331200 chr3B 94.118 34 2 0 548 581 260158461 260158428 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G331200 chr5D 422419218 422421832 2614 False 4830.000000 4830 100.000000 1 2615 1 chr5D.!!$F1 2614
1 TraesCS5D01G331200 chr5D 422436643 422437775 1132 False 1048.000000 1048 83.847000 668 1832 1 chr5D.!!$F2 1164
2 TraesCS5D01G331200 chr5A 535653202 535654456 1254 False 1910.000000 1910 93.846000 563 1856 1 chr5A.!!$F1 1293
3 TraesCS5D01G331200 chr5A 535674005 535675071 1066 False 1053.000000 1053 84.689000 667 1789 1 chr5A.!!$F2 1122
4 TraesCS5D01G331200 chr5B 509190896 509192000 1104 False 1092.000000 1092 84.825000 688 1832 1 chr5B.!!$F1 1144
5 TraesCS5D01G331200 chr5B 509170796 509173578 2782 False 1007.666667 1908 88.383333 1 2615 3 chr5B.!!$F2 2614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.249868 CTGAAGGAGCCACGTGACAA 60.25 55.0 19.3 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2410 0.249955 CCCCCGCTCCGTACTTTTTA 59.75 55.0 0.0 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.474920 TTTATATGAAACAAAACAAGGCTTCTG 57.525 29.630 0.00 0.00 0.00 3.02
59 60 2.584492 ACAAAACAAGGCTTCTGTGC 57.416 45.000 0.00 0.00 0.00 4.57
108 109 6.530019 TCAATATTACTGTGAGCTCACTGA 57.470 37.500 42.56 31.92 46.55 3.41
110 111 7.038048 TCAATATTACTGTGAGCTCACTGAAG 58.962 38.462 42.56 33.55 46.55 3.02
124 125 0.249868 CTGAAGGAGCCACGTGACAA 60.250 55.000 19.30 0.00 0.00 3.18
132 133 3.617263 GGAGCCACGTGACAAAACTATAG 59.383 47.826 19.30 0.00 0.00 1.31
134 135 3.259876 AGCCACGTGACAAAACTATAGGA 59.740 43.478 19.30 0.00 0.00 2.94
136 137 4.453136 GCCACGTGACAAAACTATAGGAAA 59.547 41.667 19.30 0.00 0.00 3.13
140 141 5.178809 ACGTGACAAAACTATAGGAAAGTGC 59.821 40.000 4.43 0.00 0.00 4.40
162 163 3.388308 CATGGAGAGATACAAGAAGCCG 58.612 50.000 0.00 0.00 0.00 5.52
192 193 1.549170 GGGAGAAGAACAACCGAGCTA 59.451 52.381 0.00 0.00 0.00 3.32
222 223 6.294231 GGAAGAAGAAACAACCAAGATCCTTC 60.294 42.308 0.00 0.00 0.00 3.46
243 254 4.325119 TCGAGATAAGGATAACGGGAGAG 58.675 47.826 0.00 0.00 0.00 3.20
246 257 4.083565 AGATAAGGATAACGGGAGAGAGC 58.916 47.826 0.00 0.00 0.00 4.09
250 261 1.602311 GATAACGGGAGAGAGCGGTA 58.398 55.000 0.00 0.00 0.00 4.02
252 263 1.099879 TAACGGGAGAGAGCGGTAGC 61.100 60.000 0.00 0.00 45.58 3.58
281 292 2.257371 GCTGCCGACACGTACTCA 59.743 61.111 0.00 0.00 0.00 3.41
282 293 2.087009 GCTGCCGACACGTACTCAC 61.087 63.158 0.00 0.00 0.00 3.51
288 299 0.792640 CGACACGTACTCACCGTACT 59.207 55.000 0.00 0.00 45.05 2.73
289 300 1.195448 CGACACGTACTCACCGTACTT 59.805 52.381 0.00 0.00 45.05 2.24
292 303 4.436050 CGACACGTACTCACCGTACTTAAT 60.436 45.833 0.00 0.00 45.05 1.40
294 305 4.455533 ACACGTACTCACCGTACTTAATGA 59.544 41.667 0.00 0.00 45.05 2.57
297 308 3.498927 ACTCACCGTACTTAATGACCG 57.501 47.619 0.00 0.00 0.00 4.79
301 312 3.949754 TCACCGTACTTAATGACCGATCT 59.050 43.478 0.00 0.00 0.00 2.75
305 316 3.975670 CGTACTTAATGACCGATCTGAGC 59.024 47.826 0.00 0.00 0.00 4.26
307 318 2.103263 ACTTAATGACCGATCTGAGCCC 59.897 50.000 0.00 0.00 0.00 5.19
309 320 0.982852 AATGACCGATCTGAGCCCCA 60.983 55.000 0.00 0.00 0.00 4.96
315 326 1.599240 GATCTGAGCCCCATTCCGC 60.599 63.158 0.00 0.00 0.00 5.54
322 333 2.751436 CCCCATTCCGCCACACTG 60.751 66.667 0.00 0.00 0.00 3.66
332 343 0.518636 CGCCACACTGAACAAGATGG 59.481 55.000 0.00 0.00 38.19 3.51
353 364 9.712305 AGATGGTATCCTTTAATTAATGTCTCG 57.288 33.333 0.00 0.00 0.00 4.04
354 365 8.848474 ATGGTATCCTTTAATTAATGTCTCGG 57.152 34.615 0.00 0.00 0.00 4.63
358 369 7.787725 ATCCTTTAATTAATGTCTCGGTGTC 57.212 36.000 0.00 0.00 0.00 3.67
363 374 5.622770 AATTAATGTCTCGGTGTCCAAAC 57.377 39.130 0.00 0.00 0.00 2.93
373 384 5.591067 TCTCGGTGTCCAAACTTATTGTTTT 59.409 36.000 0.00 0.00 45.69 2.43
374 385 5.583495 TCGGTGTCCAAACTTATTGTTTTG 58.417 37.500 0.00 0.00 45.69 2.44
388 399 9.747898 ACTTATTGTTTTGTGATAACCCATAGA 57.252 29.630 0.00 0.00 0.00 1.98
399 410 5.535783 TGATAACCCATAGACATGCAAATGG 59.464 40.000 11.90 11.90 38.90 3.16
400 411 3.668141 ACCCATAGACATGCAAATGGA 57.332 42.857 17.91 0.00 41.20 3.41
411 422 4.342951 ACATGCAAATGGATGACCTAATGG 59.657 41.667 19.83 0.00 45.22 3.16
412 423 4.248174 TGCAAATGGATGACCTAATGGA 57.752 40.909 0.00 0.00 37.04 3.41
416 427 5.106555 GCAAATGGATGACCTAATGGATACG 60.107 44.000 0.00 0.00 36.72 3.06
417 428 3.678056 TGGATGACCTAATGGATACGC 57.322 47.619 0.00 0.00 36.72 4.42
418 429 3.239449 TGGATGACCTAATGGATACGCT 58.761 45.455 0.00 0.00 36.72 5.07
419 430 3.258372 TGGATGACCTAATGGATACGCTC 59.742 47.826 0.00 0.00 36.72 5.03
420 431 3.511934 GGATGACCTAATGGATACGCTCT 59.488 47.826 0.00 0.00 42.51 4.09
421 432 4.489810 GATGACCTAATGGATACGCTCTG 58.510 47.826 0.00 0.00 42.51 3.35
422 433 3.562182 TGACCTAATGGATACGCTCTGA 58.438 45.455 0.00 0.00 42.51 3.27
423 434 4.152647 TGACCTAATGGATACGCTCTGAT 58.847 43.478 0.00 0.00 42.51 2.90
424 435 4.218635 TGACCTAATGGATACGCTCTGATC 59.781 45.833 0.00 0.00 42.51 2.92
425 436 3.511934 ACCTAATGGATACGCTCTGATCC 59.488 47.826 0.00 0.00 41.85 3.36
426 437 3.766591 CCTAATGGATACGCTCTGATCCT 59.233 47.826 2.80 0.00 41.99 3.24
427 438 3.951775 AATGGATACGCTCTGATCCTC 57.048 47.619 2.80 0.00 41.99 3.71
428 439 2.666272 TGGATACGCTCTGATCCTCT 57.334 50.000 2.80 0.00 41.99 3.69
429 440 2.950781 TGGATACGCTCTGATCCTCTT 58.049 47.619 2.80 0.00 41.99 2.85
430 441 3.300388 TGGATACGCTCTGATCCTCTTT 58.700 45.455 2.80 0.00 41.99 2.52
431 442 3.706594 TGGATACGCTCTGATCCTCTTTT 59.293 43.478 2.80 0.00 41.99 2.27
432 443 4.162320 TGGATACGCTCTGATCCTCTTTTT 59.838 41.667 2.80 0.00 41.99 1.94
457 468 3.080300 AGGGATACGCTCTGATCCTAG 57.920 52.381 1.20 0.00 41.32 3.02
471 482 5.023533 TGATCCTAGCCAGTACAATCAAC 57.976 43.478 0.00 0.00 0.00 3.18
479 490 6.054860 AGCCAGTACAATCAACTGAACTAT 57.945 37.500 4.84 0.00 45.89 2.12
497 508 9.892130 CTGAACTATAAATTCCTAAAGACACCT 57.108 33.333 0.00 0.00 0.00 4.00
506 517 8.950007 AATTCCTAAAGACACCTATTTTTGGA 57.050 30.769 0.00 0.00 35.13 3.53
511 906 9.996554 CCTAAAGACACCTATTTTTGGATTTTT 57.003 29.630 0.00 0.00 31.26 1.94
538 933 9.457436 TTTTTCTTTAAACTACTCTCACCACTT 57.543 29.630 0.00 0.00 0.00 3.16
539 934 8.658499 TTTCTTTAAACTACTCTCACCACTTC 57.342 34.615 0.00 0.00 0.00 3.01
540 935 7.356089 TCTTTAAACTACTCTCACCACTTCA 57.644 36.000 0.00 0.00 0.00 3.02
541 936 7.434492 TCTTTAAACTACTCTCACCACTTCAG 58.566 38.462 0.00 0.00 0.00 3.02
542 937 6.726490 TTAAACTACTCTCACCACTTCAGT 57.274 37.500 0.00 0.00 0.00 3.41
543 938 4.592485 AACTACTCTCACCACTTCAGTG 57.408 45.455 0.00 0.00 45.23 3.66
544 939 3.567397 ACTACTCTCACCACTTCAGTGT 58.433 45.455 6.22 0.00 44.21 3.55
545 940 4.726583 ACTACTCTCACCACTTCAGTGTA 58.273 43.478 6.22 0.00 44.21 2.90
546 941 5.138276 ACTACTCTCACCACTTCAGTGTAA 58.862 41.667 6.22 0.00 44.21 2.41
547 942 5.775701 ACTACTCTCACCACTTCAGTGTAAT 59.224 40.000 6.22 0.00 44.21 1.89
548 943 4.887748 ACTCTCACCACTTCAGTGTAATG 58.112 43.478 6.22 2.27 44.21 1.90
549 944 4.345257 ACTCTCACCACTTCAGTGTAATGT 59.655 41.667 6.22 0.00 44.21 2.71
550 945 4.883083 TCTCACCACTTCAGTGTAATGTC 58.117 43.478 6.22 0.00 44.21 3.06
551 946 4.343814 TCTCACCACTTCAGTGTAATGTCA 59.656 41.667 6.22 0.00 44.21 3.58
552 947 5.029807 TCACCACTTCAGTGTAATGTCAA 57.970 39.130 6.22 0.00 44.21 3.18
553 948 5.432645 TCACCACTTCAGTGTAATGTCAAA 58.567 37.500 6.22 0.00 44.21 2.69
554 949 5.883115 TCACCACTTCAGTGTAATGTCAAAA 59.117 36.000 6.22 0.00 44.21 2.44
555 950 6.375736 TCACCACTTCAGTGTAATGTCAAAAA 59.624 34.615 6.22 0.00 44.21 1.94
556 951 7.068103 TCACCACTTCAGTGTAATGTCAAAAAT 59.932 33.333 6.22 0.00 44.21 1.82
557 952 7.167968 CACCACTTCAGTGTAATGTCAAAAATG 59.832 37.037 6.22 0.00 44.21 2.32
558 953 6.144402 CCACTTCAGTGTAATGTCAAAAATGC 59.856 38.462 6.22 0.00 44.21 3.56
559 954 6.919662 CACTTCAGTGTAATGTCAAAAATGCT 59.080 34.615 0.00 0.00 40.96 3.79
560 955 7.113965 CACTTCAGTGTAATGTCAAAAATGCTC 59.886 37.037 0.00 0.00 40.96 4.26
561 956 6.882610 TCAGTGTAATGTCAAAAATGCTCT 57.117 33.333 0.00 0.00 0.00 4.09
571 966 9.590451 AATGTCAAAAATGCTCTTATATTGTGG 57.410 29.630 0.00 0.00 0.00 4.17
581 976 3.389983 TCTTATATTGTGGGACGAAGGGG 59.610 47.826 0.00 0.00 0.00 4.79
624 1019 6.357579 ACCTTAACATCCATCAATTTGCAA 57.642 33.333 0.00 0.00 0.00 4.08
679 1097 9.038072 TCCTGTAATAACCAACTAACTGATGTA 57.962 33.333 0.00 0.00 0.00 2.29
784 1209 1.543650 CCACGTTTCCACCACACCATA 60.544 52.381 0.00 0.00 0.00 2.74
936 1399 1.539280 CCGCTTTCTTCCCTAGCTAGC 60.539 57.143 15.74 6.62 32.80 3.42
937 1400 1.410882 CGCTTTCTTCCCTAGCTAGCT 59.589 52.381 23.12 23.12 32.80 3.32
972 1442 4.153475 TCCCAAAGTATTCTTTTCTTCGCG 59.847 41.667 0.00 0.00 41.31 5.87
1434 1910 2.125552 CTCGAAGCGTCCATGGCA 60.126 61.111 6.96 0.00 0.00 4.92
1647 2131 5.292101 GCTAGCTTTTCTGTACATCAATCGT 59.708 40.000 7.70 0.00 0.00 3.73
1652 2136 6.086765 GCTTTTCTGTACATCAATCGTTTGTG 59.913 38.462 0.00 6.66 34.32 3.33
1656 2140 4.381411 TGTACATCAATCGTTTGTGGACA 58.619 39.130 16.30 16.30 36.35 4.02
1661 2145 5.122239 ACATCAATCGTTTGTGGACATGTAG 59.878 40.000 0.00 0.00 34.32 2.74
1662 2146 4.637276 TCAATCGTTTGTGGACATGTAGT 58.363 39.130 0.00 0.00 34.32 2.73
1663 2147 4.688879 TCAATCGTTTGTGGACATGTAGTC 59.311 41.667 0.00 0.00 39.00 2.59
1664 2148 6.578435 TCAATCGTTTGTGGACATGTAGTCG 61.578 44.000 0.00 0.00 39.80 4.18
1856 2344 5.474578 TCTTCTTCTTGCTGCTCTAGAAA 57.525 39.130 0.00 0.00 36.41 2.52
1857 2345 6.047511 TCTTCTTCTTGCTGCTCTAGAAAT 57.952 37.500 0.00 0.00 36.41 2.17
1858 2346 6.471146 TCTTCTTCTTGCTGCTCTAGAAATT 58.529 36.000 0.00 0.00 36.41 1.82
1859 2347 7.615403 TCTTCTTCTTGCTGCTCTAGAAATTA 58.385 34.615 0.00 0.00 36.41 1.40
1860 2348 8.097038 TCTTCTTCTTGCTGCTCTAGAAATTAA 58.903 33.333 0.00 2.71 36.41 1.40
1861 2349 8.621532 TTCTTCTTGCTGCTCTAGAAATTAAA 57.378 30.769 0.00 0.00 36.41 1.52
1862 2350 8.261492 TCTTCTTGCTGCTCTAGAAATTAAAG 57.739 34.615 0.00 0.00 36.41 1.85
1863 2351 6.992063 TCTTGCTGCTCTAGAAATTAAAGG 57.008 37.500 0.00 0.00 0.00 3.11
1864 2352 5.355350 TCTTGCTGCTCTAGAAATTAAAGGC 59.645 40.000 0.00 0.00 0.00 4.35
1865 2353 3.947834 TGCTGCTCTAGAAATTAAAGGCC 59.052 43.478 0.00 0.00 0.00 5.19
1866 2354 4.203226 GCTGCTCTAGAAATTAAAGGCCT 58.797 43.478 0.00 0.00 0.00 5.19
1867 2355 4.036144 GCTGCTCTAGAAATTAAAGGCCTG 59.964 45.833 5.69 0.00 0.00 4.85
1868 2356 5.179452 TGCTCTAGAAATTAAAGGCCTGT 57.821 39.130 5.69 1.77 0.00 4.00
1869 2357 5.570320 TGCTCTAGAAATTAAAGGCCTGTT 58.430 37.500 5.69 5.66 0.00 3.16
1870 2358 5.648092 TGCTCTAGAAATTAAAGGCCTGTTC 59.352 40.000 5.69 5.65 0.00 3.18
1871 2359 5.220681 GCTCTAGAAATTAAAGGCCTGTTCG 60.221 44.000 5.69 0.00 0.00 3.95
1872 2360 5.183228 TCTAGAAATTAAAGGCCTGTTCGG 58.817 41.667 5.69 4.88 0.00 4.30
1881 2369 2.190578 CCTGTTCGGCATCCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
1882 2370 2.190578 CTGTTCGGCATCCCTCCC 59.809 66.667 0.00 0.00 0.00 4.30
1883 2371 2.609299 TGTTCGGCATCCCTCCCA 60.609 61.111 0.00 0.00 0.00 4.37
1884 2372 2.124695 GTTCGGCATCCCTCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
1885 2373 2.285368 TTCGGCATCCCTCCCACT 60.285 61.111 0.00 0.00 0.00 4.00
1886 2374 2.367202 TTCGGCATCCCTCCCACTC 61.367 63.158 0.00 0.00 0.00 3.51
1887 2375 3.866582 CGGCATCCCTCCCACTCC 61.867 72.222 0.00 0.00 0.00 3.85
1888 2376 2.692368 GGCATCCCTCCCACTCCA 60.692 66.667 0.00 0.00 0.00 3.86
1889 2377 2.592308 GCATCCCTCCCACTCCAC 59.408 66.667 0.00 0.00 0.00 4.02
1890 2378 2.903357 CATCCCTCCCACTCCACG 59.097 66.667 0.00 0.00 0.00 4.94
1891 2379 3.083997 ATCCCTCCCACTCCACGC 61.084 66.667 0.00 0.00 0.00 5.34
1892 2380 3.625632 ATCCCTCCCACTCCACGCT 62.626 63.158 0.00 0.00 0.00 5.07
1893 2381 3.775654 CCCTCCCACTCCACGCTC 61.776 72.222 0.00 0.00 0.00 5.03
1894 2382 2.681778 CCTCCCACTCCACGCTCT 60.682 66.667 0.00 0.00 0.00 4.09
1895 2383 2.716017 CCTCCCACTCCACGCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
1896 2384 3.057547 CTCCCACTCCACGCTCTCG 62.058 68.421 0.00 0.00 42.43 4.04
1897 2385 4.803426 CCCACTCCACGCTCTCGC 62.803 72.222 0.00 0.00 39.84 5.03
1898 2386 3.753434 CCACTCCACGCTCTCGCT 61.753 66.667 0.00 0.00 39.84 4.93
1899 2387 2.202544 CACTCCACGCTCTCGCTC 60.203 66.667 0.00 0.00 39.84 5.03
1900 2388 3.444805 ACTCCACGCTCTCGCTCC 61.445 66.667 0.00 0.00 39.84 4.70
1901 2389 4.200283 CTCCACGCTCTCGCTCCC 62.200 72.222 0.00 0.00 39.84 4.30
1914 2402 3.849064 CTCCCGGAGCTGGTAGAG 58.151 66.667 0.73 0.00 0.00 2.43
1925 2413 3.611766 GCTGGTAGAGCTGAAGGTAAA 57.388 47.619 0.00 0.00 45.21 2.01
1926 2414 3.939066 GCTGGTAGAGCTGAAGGTAAAA 58.061 45.455 0.00 0.00 45.21 1.52
1927 2415 4.324267 GCTGGTAGAGCTGAAGGTAAAAA 58.676 43.478 0.00 0.00 45.21 1.94
1928 2416 4.393371 GCTGGTAGAGCTGAAGGTAAAAAG 59.607 45.833 0.00 0.00 45.21 2.27
1929 2417 5.552178 CTGGTAGAGCTGAAGGTAAAAAGT 58.448 41.667 0.00 0.00 0.00 2.66
1930 2418 6.675413 TGGTAGAGCTGAAGGTAAAAAGTA 57.325 37.500 0.00 0.00 0.00 2.24
1931 2419 6.461640 TGGTAGAGCTGAAGGTAAAAAGTAC 58.538 40.000 0.00 0.00 0.00 2.73
1932 2420 5.575995 GGTAGAGCTGAAGGTAAAAAGTACG 59.424 44.000 0.00 0.00 0.00 3.67
1933 2421 4.566987 AGAGCTGAAGGTAAAAAGTACGG 58.433 43.478 0.00 0.00 0.00 4.02
1934 2422 4.282703 AGAGCTGAAGGTAAAAAGTACGGA 59.717 41.667 0.00 0.00 0.00 4.69
1935 2423 4.566987 AGCTGAAGGTAAAAAGTACGGAG 58.433 43.478 0.00 0.00 0.00 4.63
1936 2424 3.124806 GCTGAAGGTAAAAAGTACGGAGC 59.875 47.826 0.00 0.00 0.00 4.70
1937 2425 3.319755 TGAAGGTAAAAAGTACGGAGCG 58.680 45.455 0.00 0.00 0.00 5.03
1938 2426 2.375173 AGGTAAAAAGTACGGAGCGG 57.625 50.000 0.00 0.00 0.00 5.52
1939 2427 1.066645 AGGTAAAAAGTACGGAGCGGG 60.067 52.381 0.00 0.00 0.00 6.13
1940 2428 1.362768 GTAAAAAGTACGGAGCGGGG 58.637 55.000 0.00 0.00 0.00 5.73
1941 2429 0.249955 TAAAAAGTACGGAGCGGGGG 59.750 55.000 0.00 0.00 0.00 5.40
1942 2430 1.482748 AAAAAGTACGGAGCGGGGGA 61.483 55.000 0.00 0.00 0.00 4.81
1943 2431 1.896122 AAAAGTACGGAGCGGGGGAG 61.896 60.000 0.00 0.00 0.00 4.30
1954 2442 3.721706 GGGGGAGCAGGTGGTCTG 61.722 72.222 8.95 0.00 46.03 3.51
1964 2452 2.625737 CAGGTGGTCTGCAGATACTTG 58.374 52.381 21.47 22.12 36.60 3.16
1965 2453 2.234661 CAGGTGGTCTGCAGATACTTGA 59.765 50.000 27.42 7.68 36.60 3.02
1966 2454 2.906389 AGGTGGTCTGCAGATACTTGAA 59.094 45.455 21.47 0.00 0.00 2.69
1967 2455 3.521126 AGGTGGTCTGCAGATACTTGAAT 59.479 43.478 21.47 5.39 0.00 2.57
1968 2456 4.018960 AGGTGGTCTGCAGATACTTGAATT 60.019 41.667 21.47 0.00 0.00 2.17
1969 2457 4.702131 GGTGGTCTGCAGATACTTGAATTT 59.298 41.667 21.47 0.00 0.00 1.82
1970 2458 5.163713 GGTGGTCTGCAGATACTTGAATTTC 60.164 44.000 21.47 1.60 0.00 2.17
1971 2459 5.412594 GTGGTCTGCAGATACTTGAATTTCA 59.587 40.000 21.47 0.00 0.00 2.69
1972 2460 5.645067 TGGTCTGCAGATACTTGAATTTCAG 59.355 40.000 21.47 0.00 0.00 3.02
1973 2461 5.065731 GGTCTGCAGATACTTGAATTTCAGG 59.934 44.000 21.47 6.95 0.00 3.86
1974 2462 5.065731 GTCTGCAGATACTTGAATTTCAGGG 59.934 44.000 21.47 6.67 0.00 4.45
1975 2463 5.045651 TCTGCAGATACTTGAATTTCAGGGA 60.046 40.000 13.74 4.74 0.00 4.20
1976 2464 5.569355 TGCAGATACTTGAATTTCAGGGAA 58.431 37.500 12.51 1.72 0.00 3.97
1977 2465 5.415701 TGCAGATACTTGAATTTCAGGGAAC 59.584 40.000 12.51 3.52 0.00 3.62
1978 2466 5.415701 GCAGATACTTGAATTTCAGGGAACA 59.584 40.000 12.51 0.00 0.00 3.18
1979 2467 6.404074 GCAGATACTTGAATTTCAGGGAACAG 60.404 42.308 12.51 2.01 0.00 3.16
1980 2468 6.656693 CAGATACTTGAATTTCAGGGAACAGT 59.343 38.462 12.51 8.47 0.00 3.55
1981 2469 6.656693 AGATACTTGAATTTCAGGGAACAGTG 59.343 38.462 12.51 0.00 0.00 3.66
1982 2470 3.891366 ACTTGAATTTCAGGGAACAGTGG 59.109 43.478 12.51 0.00 0.00 4.00
1983 2471 3.874383 TGAATTTCAGGGAACAGTGGA 57.126 42.857 0.00 0.00 0.00 4.02
1984 2472 4.387026 TGAATTTCAGGGAACAGTGGAT 57.613 40.909 0.00 0.00 0.00 3.41
1985 2473 4.739793 TGAATTTCAGGGAACAGTGGATT 58.260 39.130 0.00 0.00 0.00 3.01
1986 2474 4.523943 TGAATTTCAGGGAACAGTGGATTG 59.476 41.667 0.00 0.00 0.00 2.67
1987 2475 3.593442 TTTCAGGGAACAGTGGATTGT 57.407 42.857 0.00 0.00 0.00 2.71
1988 2476 2.859165 TCAGGGAACAGTGGATTGTC 57.141 50.000 0.00 0.00 0.00 3.18
1989 2477 1.001974 TCAGGGAACAGTGGATTGTCG 59.998 52.381 0.00 0.00 0.00 4.35
1990 2478 1.001974 CAGGGAACAGTGGATTGTCGA 59.998 52.381 0.00 0.00 0.00 4.20
1991 2479 1.697432 AGGGAACAGTGGATTGTCGAA 59.303 47.619 0.00 0.00 0.00 3.71
1992 2480 1.804748 GGGAACAGTGGATTGTCGAAC 59.195 52.381 0.00 0.00 0.00 3.95
1993 2481 2.489971 GGAACAGTGGATTGTCGAACA 58.510 47.619 0.00 0.00 0.00 3.18
1994 2482 2.480419 GGAACAGTGGATTGTCGAACAG 59.520 50.000 0.00 0.00 0.00 3.16
1995 2483 1.512926 ACAGTGGATTGTCGAACAGC 58.487 50.000 0.00 0.00 0.00 4.40
1996 2484 0.798776 CAGTGGATTGTCGAACAGCC 59.201 55.000 0.00 0.00 0.00 4.85
1997 2485 0.321653 AGTGGATTGTCGAACAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
1998 2486 1.002624 TGGATTGTCGAACAGCCCC 60.003 57.895 0.00 0.00 0.00 5.80
1999 2487 1.299976 GGATTGTCGAACAGCCCCT 59.700 57.895 0.00 0.00 0.00 4.79
2000 2488 0.539986 GGATTGTCGAACAGCCCCTA 59.460 55.000 0.00 0.00 0.00 3.53
2001 2489 1.065709 GGATTGTCGAACAGCCCCTAA 60.066 52.381 0.00 0.00 0.00 2.69
2002 2490 2.280628 GATTGTCGAACAGCCCCTAAG 58.719 52.381 0.00 0.00 0.00 2.18
2003 2491 1.053424 TTGTCGAACAGCCCCTAAGT 58.947 50.000 0.00 0.00 0.00 2.24
2004 2492 0.606604 TGTCGAACAGCCCCTAAGTC 59.393 55.000 0.00 0.00 0.00 3.01
2005 2493 0.896226 GTCGAACAGCCCCTAAGTCT 59.104 55.000 0.00 0.00 0.00 3.24
2006 2494 1.275573 GTCGAACAGCCCCTAAGTCTT 59.724 52.381 0.00 0.00 0.00 3.01
2007 2495 1.549170 TCGAACAGCCCCTAAGTCTTC 59.451 52.381 0.00 0.00 0.00 2.87
2008 2496 1.550976 CGAACAGCCCCTAAGTCTTCT 59.449 52.381 0.00 0.00 0.00 2.85
2009 2497 2.028020 CGAACAGCCCCTAAGTCTTCTT 60.028 50.000 0.00 0.00 37.65 2.52
2010 2498 3.339141 GAACAGCCCCTAAGTCTTCTTG 58.661 50.000 0.00 0.00 35.36 3.02
2011 2499 1.003696 ACAGCCCCTAAGTCTTCTTGC 59.996 52.381 0.00 0.00 35.36 4.01
2012 2500 1.280421 CAGCCCCTAAGTCTTCTTGCT 59.720 52.381 0.00 0.00 35.36 3.91
2013 2501 1.280421 AGCCCCTAAGTCTTCTTGCTG 59.720 52.381 0.00 0.00 35.36 4.41
2014 2502 1.743996 CCCCTAAGTCTTCTTGCTGC 58.256 55.000 0.00 0.00 35.36 5.25
2015 2503 1.280421 CCCCTAAGTCTTCTTGCTGCT 59.720 52.381 0.00 0.00 35.36 4.24
2016 2504 2.626840 CCCTAAGTCTTCTTGCTGCTC 58.373 52.381 0.00 0.00 35.36 4.26
2017 2505 2.235898 CCCTAAGTCTTCTTGCTGCTCT 59.764 50.000 0.00 0.00 35.36 4.09
2018 2506 3.449018 CCCTAAGTCTTCTTGCTGCTCTA 59.551 47.826 0.00 0.00 35.36 2.43
2019 2507 4.441356 CCCTAAGTCTTCTTGCTGCTCTAG 60.441 50.000 0.00 0.00 35.36 2.43
2020 2508 4.400884 CCTAAGTCTTCTTGCTGCTCTAGA 59.599 45.833 0.00 0.00 35.36 2.43
2024 2512 5.177326 AGTCTTCTTGCTGCTCTAGAAATG 58.823 41.667 0.00 0.00 36.41 2.32
2059 2555 4.886579 TGTGATACTGAATCATCCATCCG 58.113 43.478 0.00 0.00 46.21 4.18
2060 2556 4.344968 TGTGATACTGAATCATCCATCCGT 59.655 41.667 0.00 0.00 46.21 4.69
2070 2566 4.155063 TCATCCATCCGTTGTTGATGAT 57.845 40.909 1.97 0.00 41.72 2.45
2072 2568 4.576053 TCATCCATCCGTTGTTGATGATTC 59.424 41.667 1.97 0.00 41.72 2.52
2073 2569 4.220693 TCCATCCGTTGTTGATGATTCT 57.779 40.909 1.97 0.00 41.72 2.40
2074 2570 4.588899 TCCATCCGTTGTTGATGATTCTT 58.411 39.130 1.97 0.00 41.72 2.52
2078 2574 6.968904 CCATCCGTTGTTGATGATTCTTTAAG 59.031 38.462 1.97 0.00 41.72 1.85
2082 2578 6.519761 CCGTTGTTGATGATTCTTTAAGTTCG 59.480 38.462 0.00 0.00 0.00 3.95
2086 2582 8.322906 TGTTGATGATTCTTTAAGTTCGACAT 57.677 30.769 0.00 0.00 0.00 3.06
2090 2586 7.971722 TGATGATTCTTTAAGTTCGACATCGTA 59.028 33.333 0.54 0.00 40.80 3.43
2094 2590 7.935338 TTCTTTAAGTTCGACATCGTAGTTT 57.065 32.000 6.34 0.00 40.80 2.66
2095 2591 7.558435 TCTTTAAGTTCGACATCGTAGTTTC 57.442 36.000 6.34 0.00 40.80 2.78
2109 2605 5.966335 TCGTAGTTTCTCGTTTGCTTTAAC 58.034 37.500 0.00 0.00 0.00 2.01
2117 2613 4.873827 TCTCGTTTGCTTTAACTGTGTTCT 59.126 37.500 0.00 0.00 0.00 3.01
2120 2616 5.797934 TCGTTTGCTTTAACTGTGTTCTTTG 59.202 36.000 0.00 0.00 0.00 2.77
2133 2629 5.636837 TGTGTTCTTTGTGTTGAAGTTAGC 58.363 37.500 0.00 0.00 0.00 3.09
2135 2631 4.201871 TGTTCTTTGTGTTGAAGTTAGCGG 60.202 41.667 0.00 0.00 0.00 5.52
2151 2647 3.975992 CGGAAGCATCTCCAAAACG 57.024 52.632 0.00 0.00 34.91 3.60
2155 2651 3.335579 GGAAGCATCTCCAAAACGTAGT 58.664 45.455 0.00 0.00 37.73 2.73
2158 2654 6.278363 GGAAGCATCTCCAAAACGTAGTATA 58.722 40.000 0.00 0.00 35.72 1.47
2162 2658 6.641314 AGCATCTCCAAAACGTAGTATAATCG 59.359 38.462 0.00 0.00 45.00 3.34
2165 2661 8.851416 CATCTCCAAAACGTAGTATAATCGATC 58.149 37.037 0.00 0.00 45.00 3.69
2179 2675 8.732531 AGTATAATCGATCTAACTAGAAGGTGC 58.267 37.037 0.00 0.00 35.69 5.01
2184 2680 0.172803 CTAACTAGAAGGTGCCGCGT 59.827 55.000 4.92 0.00 0.00 6.01
2204 2700 3.354499 CTTTGTCGCGCCGCTCTTC 62.354 63.158 7.78 0.00 0.00 2.87
2205 2701 4.656117 TTGTCGCGCCGCTCTTCA 62.656 61.111 7.78 0.00 0.00 3.02
2206 2702 3.932580 TTGTCGCGCCGCTCTTCAT 62.933 57.895 7.78 0.00 0.00 2.57
2209 2705 2.276868 CGCGCCGCTCTTCATTTG 60.277 61.111 7.78 0.00 0.00 2.32
2255 2751 2.606725 CTCACTTCGATGAGCCAACATC 59.393 50.000 5.16 0.00 39.77 3.06
2257 2753 2.350804 CACTTCGATGAGCCAACATCAG 59.649 50.000 5.16 8.48 44.57 2.90
2266 2762 1.767036 CCAACATCAGACACCCCCA 59.233 57.895 0.00 0.00 0.00 4.96
2270 2766 0.473694 ACATCAGACACCCCCACTCA 60.474 55.000 0.00 0.00 0.00 3.41
2307 2803 1.516169 GCGGCGGCAAAAATCGATT 60.516 52.632 9.78 4.39 39.62 3.34
2310 2806 1.548986 GGCGGCAAAAATCGATTGAG 58.451 50.000 12.25 5.93 0.00 3.02
2311 2807 1.548986 GCGGCAAAAATCGATTGAGG 58.451 50.000 12.25 5.18 0.00 3.86
2312 2808 1.135402 GCGGCAAAAATCGATTGAGGT 60.135 47.619 12.25 0.00 0.00 3.85
2315 2811 3.501950 GGCAAAAATCGATTGAGGTCAC 58.498 45.455 12.25 0.00 0.00 3.67
2339 2835 1.381165 GGCCCTTTCACACACGTGTT 61.381 55.000 20.79 8.03 42.83 3.32
2366 2862 0.311790 CACACATGCAAGTCACCACC 59.688 55.000 0.00 0.00 0.00 4.61
2383 2879 2.267351 CCTCCCAACAATGCACGCA 61.267 57.895 0.00 0.00 0.00 5.24
2402 2898 3.732774 CGCATACTAGCACCGACACTTAA 60.733 47.826 0.00 0.00 0.00 1.85
2403 2899 3.797256 GCATACTAGCACCGACACTTAAG 59.203 47.826 0.00 0.00 0.00 1.85
2408 2904 0.942410 GCACCGACACTTAAGACGCA 60.942 55.000 10.09 0.00 0.00 5.24
2419 2915 5.124936 ACACTTAAGACGCAAAAGAACCTTT 59.875 36.000 10.09 0.00 0.00 3.11
2446 2942 1.153188 TGTCGGCCATGCACATAGG 60.153 57.895 2.24 0.00 0.00 2.57
2464 2960 0.872388 GGCAACTTACCACGTTCCAG 59.128 55.000 0.00 0.00 0.00 3.86
2467 2963 1.531149 CAACTTACCACGTTCCAGCAG 59.469 52.381 0.00 0.00 0.00 4.24
2474 2970 3.782244 CGTTCCAGCAGCGCACTC 61.782 66.667 11.47 0.00 0.00 3.51
2485 2983 2.327343 GCGCACTCACCAGCATTGA 61.327 57.895 0.30 0.00 0.00 2.57
2490 2988 0.106708 ACTCACCAGCATTGACACGT 59.893 50.000 0.00 0.00 0.00 4.49
2519 3017 3.632643 ATGAGTCATACACATGCCACA 57.367 42.857 3.05 0.00 28.38 4.17
2527 3025 5.815222 GTCATACACATGCCACACATACTTA 59.185 40.000 0.00 0.00 36.64 2.24
2552 3050 0.838122 AGGCACAACCCTACAGAGCT 60.838 55.000 0.00 0.00 40.58 4.09
2563 3061 3.007398 CCCTACAGAGCTAATCACCCATC 59.993 52.174 0.00 0.00 0.00 3.51
2564 3062 3.643320 CCTACAGAGCTAATCACCCATCA 59.357 47.826 0.00 0.00 0.00 3.07
2577 3075 1.622607 CCCATCAACGGTAGGGCTCA 61.623 60.000 0.00 0.00 33.91 4.26
2606 3104 0.964860 TAGCGCCAATGCACCACAAT 60.965 50.000 2.29 0.00 37.32 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.925165 CACAGAAGCCTTGTTTTGTTTCATAT 59.075 34.615 0.00 0.00 0.00 1.78
108 109 1.021968 GTTTTGTCACGTGGCTCCTT 58.978 50.000 22.43 0.00 0.00 3.36
110 111 1.873698 TAGTTTTGTCACGTGGCTCC 58.126 50.000 22.43 6.28 0.00 4.70
117 118 5.390567 GGCACTTTCCTATAGTTTTGTCACG 60.391 44.000 0.00 0.00 0.00 4.35
124 125 5.191722 TCTCCATGGCACTTTCCTATAGTTT 59.808 40.000 6.96 0.00 0.00 2.66
132 133 2.725221 ATCTCTCCATGGCACTTTCC 57.275 50.000 6.96 0.00 0.00 3.13
134 135 4.225942 TCTTGTATCTCTCCATGGCACTTT 59.774 41.667 6.96 0.00 0.00 2.66
136 137 3.378512 TCTTGTATCTCTCCATGGCACT 58.621 45.455 6.96 0.00 0.00 4.40
140 141 3.737850 GGCTTCTTGTATCTCTCCATGG 58.262 50.000 4.97 4.97 0.00 3.66
162 163 4.821589 CTTCTCCCCCGCGAGCAC 62.822 72.222 8.23 0.00 0.00 4.40
192 193 2.304092 GGTTGTTTCTTCTTCCCCGTT 58.696 47.619 0.00 0.00 0.00 4.44
222 223 4.325119 TCTCTCCCGTTATCCTTATCTCG 58.675 47.826 0.00 0.00 0.00 4.04
236 247 2.829003 TGCTACCGCTCTCTCCCG 60.829 66.667 0.00 0.00 36.97 5.14
268 279 0.179215 GTACGGTGAGTACGTGTCGG 60.179 60.000 0.00 0.00 45.20 4.79
269 280 3.280532 GTACGGTGAGTACGTGTCG 57.719 57.895 0.00 0.00 45.20 4.35
281 292 3.949754 TCAGATCGGTCATTAAGTACGGT 59.050 43.478 0.00 0.00 0.00 4.83
282 293 4.537965 CTCAGATCGGTCATTAAGTACGG 58.462 47.826 0.00 0.00 0.00 4.02
288 299 1.416401 GGGGCTCAGATCGGTCATTAA 59.584 52.381 0.00 0.00 0.00 1.40
289 300 1.048601 GGGGCTCAGATCGGTCATTA 58.951 55.000 0.00 0.00 0.00 1.90
292 303 0.982852 AATGGGGCTCAGATCGGTCA 60.983 55.000 0.00 0.00 0.00 4.02
294 305 1.700042 GGAATGGGGCTCAGATCGGT 61.700 60.000 0.00 0.00 0.00 4.69
297 308 1.599240 GCGGAATGGGGCTCAGATC 60.599 63.158 0.00 0.00 0.00 2.75
301 312 4.424711 GTGGCGGAATGGGGCTCA 62.425 66.667 0.00 0.00 0.00 4.26
305 316 2.751436 CAGTGTGGCGGAATGGGG 60.751 66.667 0.00 0.00 0.00 4.96
307 318 0.888736 TGTTCAGTGTGGCGGAATGG 60.889 55.000 0.00 0.00 34.08 3.16
309 320 1.202758 TCTTGTTCAGTGTGGCGGAAT 60.203 47.619 0.00 0.00 34.08 3.01
315 326 3.941483 GGATACCATCTTGTTCAGTGTGG 59.059 47.826 0.00 0.00 36.20 4.17
332 343 8.658499 ACACCGAGACATTAATTAAAGGATAC 57.342 34.615 1.21 0.00 0.00 2.24
373 384 4.769345 TGCATGTCTATGGGTTATCACA 57.231 40.909 0.00 0.00 34.79 3.58
374 385 6.441274 CATTTGCATGTCTATGGGTTATCAC 58.559 40.000 0.00 0.00 34.79 3.06
388 399 4.342951 CCATTAGGTCATCCATTTGCATGT 59.657 41.667 0.00 0.00 35.89 3.21
399 410 4.218635 TCAGAGCGTATCCATTAGGTCATC 59.781 45.833 0.00 0.00 35.89 2.92
400 411 4.152647 TCAGAGCGTATCCATTAGGTCAT 58.847 43.478 0.00 0.00 35.89 3.06
432 443 4.654262 AGGATCAGAGCGTATCCCTAAAAA 59.346 41.667 0.00 0.00 42.32 1.94
433 444 4.223953 AGGATCAGAGCGTATCCCTAAAA 58.776 43.478 0.00 0.00 42.32 1.52
434 445 3.845860 AGGATCAGAGCGTATCCCTAAA 58.154 45.455 0.00 0.00 42.32 1.85
435 446 3.527507 AGGATCAGAGCGTATCCCTAA 57.472 47.619 0.00 0.00 42.32 2.69
436 447 3.622704 GCTAGGATCAGAGCGTATCCCTA 60.623 52.174 2.65 0.00 42.32 3.53
437 448 2.882229 GCTAGGATCAGAGCGTATCCCT 60.882 54.545 2.65 0.00 42.32 4.20
438 449 1.474879 GCTAGGATCAGAGCGTATCCC 59.525 57.143 2.65 0.00 42.32 3.85
439 450 1.474879 GGCTAGGATCAGAGCGTATCC 59.525 57.143 10.88 0.00 41.77 2.59
440 451 2.163412 CTGGCTAGGATCAGAGCGTATC 59.837 54.545 10.88 0.31 39.72 2.24
441 452 2.166829 CTGGCTAGGATCAGAGCGTAT 58.833 52.381 10.88 0.00 39.72 3.06
442 453 1.133761 ACTGGCTAGGATCAGAGCGTA 60.134 52.381 0.85 3.71 39.72 4.42
443 454 0.396417 ACTGGCTAGGATCAGAGCGT 60.396 55.000 0.85 3.33 39.72 5.07
444 455 1.268352 GTACTGGCTAGGATCAGAGCG 59.732 57.143 0.85 2.81 39.72 5.03
445 456 2.311463 TGTACTGGCTAGGATCAGAGC 58.689 52.381 0.85 9.11 38.00 4.09
446 457 4.586421 TGATTGTACTGGCTAGGATCAGAG 59.414 45.833 0.85 0.00 35.20 3.35
457 468 7.843490 TTATAGTTCAGTTGATTGTACTGGC 57.157 36.000 0.00 0.00 42.53 4.85
471 482 9.892130 AGGTGTCTTTAGGAATTTATAGTTCAG 57.108 33.333 3.34 0.00 0.00 3.02
535 930 7.013655 AGAGCATTTTTGACATTACACTGAAGT 59.986 33.333 0.00 0.00 0.00 3.01
536 931 7.365741 AGAGCATTTTTGACATTACACTGAAG 58.634 34.615 0.00 0.00 0.00 3.02
537 932 7.275888 AGAGCATTTTTGACATTACACTGAA 57.724 32.000 0.00 0.00 0.00 3.02
538 933 6.882610 AGAGCATTTTTGACATTACACTGA 57.117 33.333 0.00 0.00 0.00 3.41
545 940 9.590451 CCACAATATAAGAGCATTTTTGACATT 57.410 29.630 0.00 0.00 0.00 2.71
546 941 8.199449 CCCACAATATAAGAGCATTTTTGACAT 58.801 33.333 0.00 0.00 0.00 3.06
547 942 7.395772 TCCCACAATATAAGAGCATTTTTGACA 59.604 33.333 0.00 0.00 0.00 3.58
548 943 7.702348 GTCCCACAATATAAGAGCATTTTTGAC 59.298 37.037 0.00 0.00 0.00 3.18
549 944 7.415095 CGTCCCACAATATAAGAGCATTTTTGA 60.415 37.037 0.00 0.00 0.00 2.69
550 945 6.692681 CGTCCCACAATATAAGAGCATTTTTG 59.307 38.462 0.00 0.00 0.00 2.44
551 946 6.601613 TCGTCCCACAATATAAGAGCATTTTT 59.398 34.615 0.00 0.00 0.00 1.94
552 947 6.119536 TCGTCCCACAATATAAGAGCATTTT 58.880 36.000 0.00 0.00 0.00 1.82
553 948 5.680619 TCGTCCCACAATATAAGAGCATTT 58.319 37.500 0.00 0.00 0.00 2.32
554 949 5.290493 TCGTCCCACAATATAAGAGCATT 57.710 39.130 0.00 0.00 0.00 3.56
555 950 4.955811 TCGTCCCACAATATAAGAGCAT 57.044 40.909 0.00 0.00 0.00 3.79
556 951 4.442893 CCTTCGTCCCACAATATAAGAGCA 60.443 45.833 0.00 0.00 0.00 4.26
557 952 4.058817 CCTTCGTCCCACAATATAAGAGC 58.941 47.826 0.00 0.00 0.00 4.09
558 953 4.503296 CCCCTTCGTCCCACAATATAAGAG 60.503 50.000 0.00 0.00 0.00 2.85
559 954 3.389983 CCCCTTCGTCCCACAATATAAGA 59.610 47.826 0.00 0.00 0.00 2.10
560 955 3.496160 CCCCCTTCGTCCCACAATATAAG 60.496 52.174 0.00 0.00 0.00 1.73
561 956 2.440253 CCCCCTTCGTCCCACAATATAA 59.560 50.000 0.00 0.00 0.00 0.98
568 963 3.027675 GCTACCCCCTTCGTCCCAC 62.028 68.421 0.00 0.00 0.00 4.61
571 966 1.114119 CCTAGCTACCCCCTTCGTCC 61.114 65.000 0.00 0.00 0.00 4.79
581 976 1.279749 ACCCTTTGGCCCTAGCTACC 61.280 60.000 0.00 0.00 39.73 3.18
624 1019 2.698797 CGGTGTCCATATCAGTTAGGGT 59.301 50.000 0.00 0.00 33.34 4.34
679 1097 1.376424 CACATGCTTCTCTGCGGGT 60.376 57.895 0.00 0.00 35.36 5.28
936 1399 3.665190 ACTTTGGGAGAAAGCGAACTAG 58.335 45.455 0.00 0.00 0.00 2.57
937 1400 3.764237 ACTTTGGGAGAAAGCGAACTA 57.236 42.857 0.00 0.00 0.00 2.24
972 1442 1.201181 TCTCTTTCTGTCTCGCTCTGC 59.799 52.381 0.00 0.00 0.00 4.26
1434 1910 2.283966 ACTACCCTCGTGCCTGCT 60.284 61.111 0.00 0.00 0.00 4.24
1647 2131 4.859304 ACTACGACTACATGTCCACAAA 57.141 40.909 0.00 0.00 42.49 2.83
1652 2136 2.939103 ACGGTACTACGACTACATGTCC 59.061 50.000 0.00 0.00 42.49 4.02
1812 2300 3.031013 TCATTCACATCGGAGCTAGGAA 58.969 45.455 0.00 0.00 0.00 3.36
1823 2311 6.487960 CAGCAAGAAGAAGATCATTCACATC 58.512 40.000 0.00 0.00 0.00 3.06
1864 2352 2.190578 GGAGGGATGCCGAACAGG 59.809 66.667 0.00 0.00 44.97 4.00
1865 2353 2.190578 GGGAGGGATGCCGAACAG 59.809 66.667 0.00 0.00 0.00 3.16
1866 2354 2.609299 TGGGAGGGATGCCGAACA 60.609 61.111 0.00 0.00 0.00 3.18
1867 2355 2.124695 GTGGGAGGGATGCCGAAC 60.125 66.667 0.00 0.00 0.00 3.95
1868 2356 2.285368 AGTGGGAGGGATGCCGAA 60.285 61.111 0.00 0.00 0.00 4.30
1869 2357 2.764128 GAGTGGGAGGGATGCCGA 60.764 66.667 0.00 0.00 0.00 5.54
1870 2358 3.866582 GGAGTGGGAGGGATGCCG 61.867 72.222 0.00 0.00 0.00 5.69
1871 2359 2.692368 TGGAGTGGGAGGGATGCC 60.692 66.667 0.00 0.00 0.00 4.40
1872 2360 2.592308 GTGGAGTGGGAGGGATGC 59.408 66.667 0.00 0.00 0.00 3.91
1873 2361 2.903357 CGTGGAGTGGGAGGGATG 59.097 66.667 0.00 0.00 0.00 3.51
1874 2362 3.083997 GCGTGGAGTGGGAGGGAT 61.084 66.667 0.00 0.00 0.00 3.85
1875 2363 4.316823 AGCGTGGAGTGGGAGGGA 62.317 66.667 0.00 0.00 0.00 4.20
1876 2364 3.775654 GAGCGTGGAGTGGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
1877 2365 2.681778 AGAGCGTGGAGTGGGAGG 60.682 66.667 0.00 0.00 0.00 4.30
1878 2366 2.888863 GAGAGCGTGGAGTGGGAG 59.111 66.667 0.00 0.00 0.00 4.30
1879 2367 3.062466 CGAGAGCGTGGAGTGGGA 61.062 66.667 0.00 0.00 0.00 4.37
1897 2385 2.494530 GCTCTACCAGCTCCGGGAG 61.495 68.421 19.95 19.95 45.83 4.30
1898 2386 2.442272 GCTCTACCAGCTCCGGGA 60.442 66.667 0.00 0.00 45.83 5.14
1906 2394 5.552178 ACTTTTTACCTTCAGCTCTACCAG 58.448 41.667 0.00 0.00 0.00 4.00
1907 2395 5.562298 ACTTTTTACCTTCAGCTCTACCA 57.438 39.130 0.00 0.00 0.00 3.25
1908 2396 5.575995 CGTACTTTTTACCTTCAGCTCTACC 59.424 44.000 0.00 0.00 0.00 3.18
1909 2397 5.575995 CCGTACTTTTTACCTTCAGCTCTAC 59.424 44.000 0.00 0.00 0.00 2.59
1910 2398 5.477984 TCCGTACTTTTTACCTTCAGCTCTA 59.522 40.000 0.00 0.00 0.00 2.43
1911 2399 4.282703 TCCGTACTTTTTACCTTCAGCTCT 59.717 41.667 0.00 0.00 0.00 4.09
1912 2400 4.563061 TCCGTACTTTTTACCTTCAGCTC 58.437 43.478 0.00 0.00 0.00 4.09
1913 2401 4.566987 CTCCGTACTTTTTACCTTCAGCT 58.433 43.478 0.00 0.00 0.00 4.24
1914 2402 3.124806 GCTCCGTACTTTTTACCTTCAGC 59.875 47.826 0.00 0.00 0.00 4.26
1915 2403 3.367025 CGCTCCGTACTTTTTACCTTCAG 59.633 47.826 0.00 0.00 0.00 3.02
1916 2404 3.319755 CGCTCCGTACTTTTTACCTTCA 58.680 45.455 0.00 0.00 0.00 3.02
1917 2405 2.669924 CCGCTCCGTACTTTTTACCTTC 59.330 50.000 0.00 0.00 0.00 3.46
1918 2406 2.613725 CCCGCTCCGTACTTTTTACCTT 60.614 50.000 0.00 0.00 0.00 3.50
1919 2407 1.066645 CCCGCTCCGTACTTTTTACCT 60.067 52.381 0.00 0.00 0.00 3.08
1920 2408 1.362768 CCCGCTCCGTACTTTTTACC 58.637 55.000 0.00 0.00 0.00 2.85
1921 2409 1.362768 CCCCGCTCCGTACTTTTTAC 58.637 55.000 0.00 0.00 0.00 2.01
1922 2410 0.249955 CCCCCGCTCCGTACTTTTTA 59.750 55.000 0.00 0.00 0.00 1.52
1923 2411 1.002990 CCCCCGCTCCGTACTTTTT 60.003 57.895 0.00 0.00 0.00 1.94
1924 2412 1.896122 CTCCCCCGCTCCGTACTTTT 61.896 60.000 0.00 0.00 0.00 2.27
1925 2413 2.284112 TCCCCCGCTCCGTACTTT 60.284 61.111 0.00 0.00 0.00 2.66
1926 2414 2.758737 CTCCCCCGCTCCGTACTT 60.759 66.667 0.00 0.00 0.00 2.24
1937 2425 3.721706 CAGACCACCTGCTCCCCC 61.722 72.222 0.00 0.00 35.89 5.40
1944 2432 2.234661 TCAAGTATCTGCAGACCACCTG 59.765 50.000 20.97 18.57 45.67 4.00
1945 2433 2.540383 TCAAGTATCTGCAGACCACCT 58.460 47.619 20.97 9.42 0.00 4.00
1946 2434 3.334583 TTCAAGTATCTGCAGACCACC 57.665 47.619 20.97 7.10 0.00 4.61
1947 2435 5.412594 TGAAATTCAAGTATCTGCAGACCAC 59.587 40.000 20.97 19.38 0.00 4.16
1948 2436 5.559770 TGAAATTCAAGTATCTGCAGACCA 58.440 37.500 20.97 7.21 0.00 4.02
1949 2437 5.065731 CCTGAAATTCAAGTATCTGCAGACC 59.934 44.000 20.97 12.91 0.00 3.85
1950 2438 5.065731 CCCTGAAATTCAAGTATCTGCAGAC 59.934 44.000 20.97 8.15 0.00 3.51
1951 2439 5.045651 TCCCTGAAATTCAAGTATCTGCAGA 60.046 40.000 20.79 20.79 0.00 4.26
1952 2440 5.188434 TCCCTGAAATTCAAGTATCTGCAG 58.812 41.667 7.63 7.63 0.00 4.41
1953 2441 5.178096 TCCCTGAAATTCAAGTATCTGCA 57.822 39.130 0.00 0.00 0.00 4.41
1954 2442 5.415701 TGTTCCCTGAAATTCAAGTATCTGC 59.584 40.000 0.00 0.00 0.00 4.26
1955 2443 6.656693 ACTGTTCCCTGAAATTCAAGTATCTG 59.343 38.462 0.00 0.00 0.00 2.90
1956 2444 6.656693 CACTGTTCCCTGAAATTCAAGTATCT 59.343 38.462 0.00 0.00 0.00 1.98
1957 2445 6.127897 CCACTGTTCCCTGAAATTCAAGTATC 60.128 42.308 0.00 0.00 0.00 2.24
1958 2446 5.711976 CCACTGTTCCCTGAAATTCAAGTAT 59.288 40.000 0.00 0.00 0.00 2.12
1959 2447 5.070001 CCACTGTTCCCTGAAATTCAAGTA 58.930 41.667 0.00 0.00 0.00 2.24
1960 2448 3.891366 CCACTGTTCCCTGAAATTCAAGT 59.109 43.478 0.00 0.00 0.00 3.16
1961 2449 4.144297 TCCACTGTTCCCTGAAATTCAAG 58.856 43.478 0.00 0.00 0.00 3.02
1962 2450 4.177537 TCCACTGTTCCCTGAAATTCAA 57.822 40.909 0.00 0.00 0.00 2.69
1963 2451 3.874383 TCCACTGTTCCCTGAAATTCA 57.126 42.857 0.00 0.00 0.00 2.57
1964 2452 4.524328 ACAATCCACTGTTCCCTGAAATTC 59.476 41.667 0.00 0.00 0.00 2.17
1965 2453 4.482990 ACAATCCACTGTTCCCTGAAATT 58.517 39.130 0.00 0.00 0.00 1.82
1966 2454 4.082125 GACAATCCACTGTTCCCTGAAAT 58.918 43.478 0.00 0.00 0.00 2.17
1967 2455 3.486383 GACAATCCACTGTTCCCTGAAA 58.514 45.455 0.00 0.00 0.00 2.69
1968 2456 2.549992 CGACAATCCACTGTTCCCTGAA 60.550 50.000 0.00 0.00 0.00 3.02
1969 2457 1.001974 CGACAATCCACTGTTCCCTGA 59.998 52.381 0.00 0.00 0.00 3.86
1970 2458 1.001974 TCGACAATCCACTGTTCCCTG 59.998 52.381 0.00 0.00 0.00 4.45
1971 2459 1.348064 TCGACAATCCACTGTTCCCT 58.652 50.000 0.00 0.00 0.00 4.20
1972 2460 1.804748 GTTCGACAATCCACTGTTCCC 59.195 52.381 0.00 0.00 0.00 3.97
1973 2461 2.480419 CTGTTCGACAATCCACTGTTCC 59.520 50.000 0.00 0.00 0.00 3.62
1974 2462 2.096218 GCTGTTCGACAATCCACTGTTC 60.096 50.000 0.00 0.00 0.00 3.18
1975 2463 1.873591 GCTGTTCGACAATCCACTGTT 59.126 47.619 0.00 0.00 0.00 3.16
1976 2464 1.512926 GCTGTTCGACAATCCACTGT 58.487 50.000 0.00 0.00 0.00 3.55
1977 2465 0.798776 GGCTGTTCGACAATCCACTG 59.201 55.000 0.00 0.00 0.00 3.66
1978 2466 0.321653 GGGCTGTTCGACAATCCACT 60.322 55.000 0.00 0.00 0.00 4.00
1979 2467 1.305930 GGGGCTGTTCGACAATCCAC 61.306 60.000 0.00 0.00 0.00 4.02
1980 2468 1.002624 GGGGCTGTTCGACAATCCA 60.003 57.895 0.00 0.00 0.00 3.41
1981 2469 0.539986 TAGGGGCTGTTCGACAATCC 59.460 55.000 0.00 0.00 0.00 3.01
1982 2470 2.280628 CTTAGGGGCTGTTCGACAATC 58.719 52.381 0.00 0.00 0.00 2.67
1983 2471 1.628846 ACTTAGGGGCTGTTCGACAAT 59.371 47.619 0.00 0.00 0.00 2.71
1984 2472 1.001633 GACTTAGGGGCTGTTCGACAA 59.998 52.381 0.00 0.00 0.00 3.18
1985 2473 0.606604 GACTTAGGGGCTGTTCGACA 59.393 55.000 0.00 0.00 0.00 4.35
1986 2474 0.896226 AGACTTAGGGGCTGTTCGAC 59.104 55.000 0.00 0.00 0.00 4.20
1987 2475 1.549170 GAAGACTTAGGGGCTGTTCGA 59.451 52.381 0.00 0.00 30.75 3.71
1988 2476 1.550976 AGAAGACTTAGGGGCTGTTCG 59.449 52.381 0.00 0.00 30.75 3.95
1989 2477 3.339141 CAAGAAGACTTAGGGGCTGTTC 58.661 50.000 0.00 0.00 34.70 3.18
1990 2478 2.553247 GCAAGAAGACTTAGGGGCTGTT 60.553 50.000 0.00 0.00 34.70 3.16
1991 2479 1.003696 GCAAGAAGACTTAGGGGCTGT 59.996 52.381 0.00 0.00 34.70 4.40
1992 2480 1.280421 AGCAAGAAGACTTAGGGGCTG 59.720 52.381 3.24 0.00 32.85 4.85
1993 2481 1.280421 CAGCAAGAAGACTTAGGGGCT 59.720 52.381 0.00 0.00 33.82 5.19
1994 2482 1.743996 CAGCAAGAAGACTTAGGGGC 58.256 55.000 0.00 0.00 34.70 5.80
1995 2483 1.280421 AGCAGCAAGAAGACTTAGGGG 59.720 52.381 0.00 0.00 34.70 4.79
1996 2484 2.235898 AGAGCAGCAAGAAGACTTAGGG 59.764 50.000 0.00 0.00 34.70 3.53
1997 2485 3.608316 AGAGCAGCAAGAAGACTTAGG 57.392 47.619 0.00 0.00 34.70 2.69
1998 2486 5.574891 TCTAGAGCAGCAAGAAGACTTAG 57.425 43.478 0.00 0.00 34.70 2.18
1999 2487 5.984695 TTCTAGAGCAGCAAGAAGACTTA 57.015 39.130 0.00 0.00 34.70 2.24
2000 2488 4.881019 TTCTAGAGCAGCAAGAAGACTT 57.119 40.909 0.00 0.00 36.73 3.01
2001 2489 4.881019 TTTCTAGAGCAGCAAGAAGACT 57.119 40.909 0.00 0.00 31.30 3.24
2002 2490 5.174395 TCATTTCTAGAGCAGCAAGAAGAC 58.826 41.667 0.00 0.00 31.30 3.01
2003 2491 5.411831 TCATTTCTAGAGCAGCAAGAAGA 57.588 39.130 0.00 0.00 31.30 2.87
2004 2492 5.642919 ACTTCATTTCTAGAGCAGCAAGAAG 59.357 40.000 0.00 0.00 35.96 2.85
2005 2493 5.555017 ACTTCATTTCTAGAGCAGCAAGAA 58.445 37.500 0.00 0.00 0.00 2.52
2006 2494 5.157940 ACTTCATTTCTAGAGCAGCAAGA 57.842 39.130 0.00 0.00 0.00 3.02
2007 2495 5.163774 GGAACTTCATTTCTAGAGCAGCAAG 60.164 44.000 0.00 0.00 0.00 4.01
2008 2496 4.697352 GGAACTTCATTTCTAGAGCAGCAA 59.303 41.667 0.00 0.00 0.00 3.91
2009 2497 4.019860 AGGAACTTCATTTCTAGAGCAGCA 60.020 41.667 0.00 0.00 27.25 4.41
2010 2498 4.512484 AGGAACTTCATTTCTAGAGCAGC 58.488 43.478 0.00 0.00 27.25 5.25
2024 2512 8.394121 GATTCAGTATCACATCAAAGGAACTTC 58.606 37.037 0.00 0.00 39.62 3.01
2059 2555 8.067784 TGTCGAACTTAAAGAATCATCAACAAC 58.932 33.333 0.00 0.00 0.00 3.32
2060 2556 8.148807 TGTCGAACTTAAAGAATCATCAACAA 57.851 30.769 0.00 0.00 0.00 2.83
2070 2566 7.864379 AGAAACTACGATGTCGAACTTAAAGAA 59.136 33.333 9.67 0.00 43.02 2.52
2072 2568 7.459862 CGAGAAACTACGATGTCGAACTTAAAG 60.460 40.741 9.67 0.00 43.02 1.85
2073 2569 6.303970 CGAGAAACTACGATGTCGAACTTAAA 59.696 38.462 9.67 0.00 43.02 1.52
2074 2570 5.791974 CGAGAAACTACGATGTCGAACTTAA 59.208 40.000 9.67 0.00 43.02 1.85
2078 2574 3.486584 ACGAGAAACTACGATGTCGAAC 58.513 45.455 9.67 0.00 43.02 3.95
2082 2578 3.673809 AGCAAACGAGAAACTACGATGTC 59.326 43.478 0.00 0.00 0.00 3.06
2086 2582 5.750067 AGTTAAAGCAAACGAGAAACTACGA 59.250 36.000 0.00 0.00 34.46 3.43
2090 2586 5.123344 ACACAGTTAAAGCAAACGAGAAACT 59.877 36.000 0.00 0.00 34.46 2.66
2094 2590 4.873827 AGAACACAGTTAAAGCAAACGAGA 59.126 37.500 0.00 0.00 34.46 4.04
2095 2591 5.156804 AGAACACAGTTAAAGCAAACGAG 57.843 39.130 0.00 0.00 34.46 4.18
2109 2605 5.739161 GCTAACTTCAACACAAAGAACACAG 59.261 40.000 0.00 0.00 0.00 3.66
2117 2613 3.242936 GCTTCCGCTAACTTCAACACAAA 60.243 43.478 0.00 0.00 0.00 2.83
2120 2616 1.871039 TGCTTCCGCTAACTTCAACAC 59.129 47.619 0.00 0.00 36.97 3.32
2133 2629 1.156736 ACGTTTTGGAGATGCTTCCG 58.843 50.000 0.00 0.00 40.27 4.30
2135 2631 7.766219 TTATACTACGTTTTGGAGATGCTTC 57.234 36.000 0.00 0.00 0.00 3.86
2155 2651 7.148289 CGGCACCTTCTAGTTAGATCGATTATA 60.148 40.741 0.00 0.00 31.40 0.98
2158 2654 4.261656 CGGCACCTTCTAGTTAGATCGATT 60.262 45.833 0.00 0.00 31.40 3.34
2162 2658 2.745102 GCGGCACCTTCTAGTTAGATC 58.255 52.381 0.00 0.00 31.40 2.75
2165 2661 0.172803 ACGCGGCACCTTCTAGTTAG 59.827 55.000 12.47 0.00 0.00 2.34
2191 2687 2.434185 AAATGAAGAGCGGCGCGA 60.434 55.556 27.59 9.62 0.00 5.87
2204 2700 3.975992 GCTGTCGGCACTACAAATG 57.024 52.632 0.00 0.00 41.35 2.32
2228 2724 1.474478 GCTCATCGAAGTGAGAGGTCA 59.526 52.381 18.10 0.00 46.77 4.02
2255 2751 1.073199 GGTTGAGTGGGGGTGTCTG 59.927 63.158 0.00 0.00 0.00 3.51
2257 2753 2.434774 GGGTTGAGTGGGGGTGTC 59.565 66.667 0.00 0.00 0.00 3.67
2266 2762 2.009882 TGGGTTGGTGGGGTTGAGT 61.010 57.895 0.00 0.00 0.00 3.41
2270 2766 2.280753 GTGTGGGTTGGTGGGGTT 59.719 61.111 0.00 0.00 0.00 4.11
2310 2806 4.280019 AAAGGGCCGGTGGTGACC 62.280 66.667 1.90 0.00 39.14 4.02
2311 2807 2.671963 GAAAGGGCCGGTGGTGAC 60.672 66.667 1.90 0.00 0.00 3.67
2312 2808 3.172106 TGAAAGGGCCGGTGGTGA 61.172 61.111 1.90 0.00 0.00 4.02
2315 2811 2.983592 GTGTGAAAGGGCCGGTGG 60.984 66.667 1.90 0.00 0.00 4.61
2357 2853 1.149101 ATTGTTGGGAGGTGGTGACT 58.851 50.000 0.00 0.00 0.00 3.41
2358 2854 1.247567 CATTGTTGGGAGGTGGTGAC 58.752 55.000 0.00 0.00 0.00 3.67
2366 2862 1.093972 TATGCGTGCATTGTTGGGAG 58.906 50.000 13.20 0.00 37.82 4.30
2383 2879 4.201891 CGTCTTAAGTGTCGGTGCTAGTAT 60.202 45.833 1.63 0.00 0.00 2.12
2402 2898 3.013921 TGTGAAAGGTTCTTTTGCGTCT 58.986 40.909 0.00 0.00 0.00 4.18
2403 2899 3.105937 GTGTGAAAGGTTCTTTTGCGTC 58.894 45.455 0.00 0.00 0.00 5.19
2446 2942 0.237498 GCTGGAACGTGGTAAGTTGC 59.763 55.000 0.00 0.00 39.81 4.17
2452 2948 2.048597 CGCTGCTGGAACGTGGTA 60.049 61.111 0.00 0.00 0.00 3.25
2460 2956 4.687215 GGTGAGTGCGCTGCTGGA 62.687 66.667 3.44 0.00 0.00 3.86
2467 2963 2.177531 CAATGCTGGTGAGTGCGC 59.822 61.111 0.00 0.00 0.00 6.09
2474 2970 2.157668 GTCTTACGTGTCAATGCTGGTG 59.842 50.000 0.00 0.00 0.00 4.17
2485 2983 2.287970 TGACTCATTGCGTCTTACGTGT 60.288 45.455 8.16 0.00 44.73 4.49
2490 2988 5.066968 TGTGTATGACTCATTGCGTCTTA 57.933 39.130 8.16 3.80 32.70 2.10
2503 3001 4.191544 AGTATGTGTGGCATGTGTATGAC 58.808 43.478 0.00 0.00 43.00 3.06
2519 3017 5.243207 GGTTGTGCCTACTTGTAAGTATGT 58.757 41.667 5.05 0.00 40.46 2.29
2527 3025 2.038557 CTGTAGGGTTGTGCCTACTTGT 59.961 50.000 1.53 0.00 39.47 3.16
2546 3044 2.868583 CGTTGATGGGTGATTAGCTCTG 59.131 50.000 0.00 0.00 0.00 3.35
2552 3050 2.436542 CCCTACCGTTGATGGGTGATTA 59.563 50.000 0.00 0.00 38.50 1.75
2563 3061 2.509336 CGCTGAGCCCTACCGTTG 60.509 66.667 0.00 0.00 0.00 4.10
2564 3062 3.771160 CCGCTGAGCCCTACCGTT 61.771 66.667 0.00 0.00 0.00 4.44
2591 3089 1.472026 GGATCATTGTGGTGCATTGGC 60.472 52.381 0.00 0.00 41.68 4.52
2592 3090 1.137479 GGGATCATTGTGGTGCATTGG 59.863 52.381 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.