Multiple sequence alignment - TraesCS5D01G331100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G331100 chr5D 100.000 5464 0 0 1 5464 422022619 422017156 0.000000e+00 10091.0
1 TraesCS5D01G331100 chr5D 88.581 289 31 1 5176 5464 446076561 446076275 3.130000e-92 350.0
2 TraesCS5D01G331100 chr5D 96.667 120 2 2 2135 2252 408791882 408792001 1.200000e-46 198.0
3 TraesCS5D01G331100 chr5B 93.226 2362 81 30 2479 4815 508797353 508795046 0.000000e+00 3402.0
4 TraesCS5D01G331100 chr5B 85.576 1754 132 50 66 1766 508799430 508797745 0.000000e+00 1725.0
5 TraesCS5D01G331100 chr5B 95.152 330 10 5 4490 4815 508787344 508787017 2.920000e-142 516.0
6 TraesCS5D01G331100 chr5B 95.152 330 10 5 4490 4815 508793214 508792887 2.920000e-142 516.0
7 TraesCS5D01G331100 chr5B 94.545 330 12 5 4490 4815 508791052 508790725 6.320000e-139 505.0
8 TraesCS5D01G331100 chr5B 93.636 330 15 5 4490 4815 508789201 508788874 6.360000e-134 488.0
9 TraesCS5D01G331100 chr5B 93.103 290 16 1 1858 2147 508797647 508797362 6.540000e-114 422.0
10 TraesCS5D01G331100 chr5B 94.444 180 9 1 2289 2468 157026370 157026192 5.390000e-70 276.0
11 TraesCS5D01G331100 chr5B 94.022 184 7 4 2286 2466 577516221 577516039 5.390000e-70 276.0
12 TraesCS5D01G331100 chr5B 95.376 173 7 1 2285 2457 305310730 305310901 1.940000e-69 274.0
13 TraesCS5D01G331100 chr5B 96.581 117 4 0 2145 2261 474610367 474610251 1.550000e-45 195.0
14 TraesCS5D01G331100 chr5B 93.548 124 4 4 2131 2251 45040279 45040157 1.210000e-41 182.0
15 TraesCS5D01G331100 chr5B 88.235 68 8 0 4805 4872 508788314 508788247 1.260000e-11 82.4
16 TraesCS5D01G331100 chr5B 88.235 68 8 0 4805 4872 508790167 508790100 1.260000e-11 82.4
17 TraesCS5D01G331100 chr5B 88.235 68 8 0 4805 4872 508792021 508791954 1.260000e-11 82.4
18 TraesCS5D01G331100 chr5B 86.765 68 9 0 4805 4872 508786151 508786084 5.870000e-10 76.8
19 TraesCS5D01G331100 chr5B 78.947 95 19 1 358 451 563359850 563359944 4.570000e-06 63.9
20 TraesCS5D01G331100 chr5B 97.222 36 1 0 4871 4906 459562460 459562495 1.640000e-05 62.1
21 TraesCS5D01G331100 chr5A 89.293 1541 98 26 2610 4110 535577309 535575796 0.000000e+00 1869.0
22 TraesCS5D01G331100 chr5A 91.099 719 35 10 4110 4815 535575653 535574951 0.000000e+00 946.0
23 TraesCS5D01G331100 chr5A 88.889 765 46 18 546 1290 535579827 535579082 0.000000e+00 905.0
24 TraesCS5D01G331100 chr5A 90.289 381 29 3 1767 2143 535578272 535577896 4.920000e-135 492.0
25 TraesCS5D01G331100 chr5A 86.986 438 31 11 1340 1766 535578737 535578315 2.300000e-128 470.0
26 TraesCS5D01G331100 chr5A 80.043 466 57 15 69 529 535580244 535579810 4.110000e-81 313.0
27 TraesCS5D01G331100 chr5A 92.143 140 10 1 2456 2595 535577851 535577713 4.320000e-46 196.0
28 TraesCS5D01G331100 chr5A 97.727 44 1 0 2251 2294 535577893 535577850 5.870000e-10 76.8
29 TraesCS5D01G331100 chr5A 95.122 41 2 0 1 41 535580286 535580246 1.270000e-06 65.8
30 TraesCS5D01G331100 chr3D 97.124 591 15 1 4871 5461 93325925 93326513 0.000000e+00 996.0
31 TraesCS5D01G331100 chr3D 97.297 111 3 0 2141 2251 552761385 552761275 7.230000e-44 189.0
32 TraesCS5D01G331100 chr3D 91.111 45 4 0 4826 4870 169682282 169682326 1.640000e-05 62.1
33 TraesCS5D01G331100 chr3D 91.111 45 4 0 4871 4915 371442808 371442852 1.640000e-05 62.1
34 TraesCS5D01G331100 chr3D 100.000 28 0 0 4842 4869 560805934 560805961 1.000000e-02 52.8
35 TraesCS5D01G331100 chr6D 95.960 594 23 1 4871 5464 5778838 5778246 0.000000e+00 963.0
36 TraesCS5D01G331100 chr6D 94.828 174 8 1 2293 2466 392897139 392896967 2.510000e-68 270.0
37 TraesCS5D01G331100 chr6D 94.350 177 9 1 2290 2466 406391526 406391351 2.510000e-68 270.0
38 TraesCS5D01G331100 chr6D 94.286 35 2 0 4871 4905 15251817 15251783 3.000000e-03 54.7
39 TraesCS5D01G331100 chr6D 94.286 35 2 0 4838 4872 65759143 65759109 3.000000e-03 54.7
40 TraesCS5D01G331100 chr4B 95.439 592 24 2 4870 5461 43736371 43736959 0.000000e+00 941.0
41 TraesCS5D01G331100 chr4B 94.262 122 5 2 2132 2252 20742516 20742396 9.350000e-43 185.0
42 TraesCS5D01G331100 chr4B 93.617 47 3 0 4825 4871 653746108 653746062 2.730000e-08 71.3
43 TraesCS5D01G331100 chr4B 96.970 33 0 1 364 396 626421170 626421139 3.000000e-03 54.7
44 TraesCS5D01G331100 chr2B 94.915 590 27 2 4872 5461 677350929 677351515 0.000000e+00 920.0
45 TraesCS5D01G331100 chr2B 93.956 182 9 2 2293 2472 174794986 174794805 1.940000e-69 274.0
46 TraesCS5D01G331100 chr7A 96.245 506 16 1 4959 5464 54072175 54071673 0.000000e+00 826.0
47 TraesCS5D01G331100 chr7A 84.418 584 75 11 4872 5446 127720883 127721459 1.330000e-155 560.0
48 TraesCS5D01G331100 chr7A 94.857 175 8 1 2286 2460 62993148 62992975 6.970000e-69 272.0
49 TraesCS5D01G331100 chr7A 90.909 55 3 2 4863 4915 54072231 54072177 7.590000e-09 73.1
50 TraesCS5D01G331100 chr6A 94.872 507 23 1 4958 5464 230211827 230211324 0.000000e+00 789.0
51 TraesCS5D01G331100 chr6A 84.706 595 81 8 4871 5464 38964510 38963925 2.190000e-163 586.0
52 TraesCS5D01G331100 chr6A 98.182 110 2 0 2142 2251 70933924 70934033 5.590000e-45 193.0
53 TraesCS5D01G331100 chr6A 94.595 37 1 1 359 395 2936065 2936100 7.650000e-04 56.5
54 TraesCS5D01G331100 chr2A 84.704 608 78 11 4861 5464 762412618 762412022 1.310000e-165 593.0
55 TraesCS5D01G331100 chr2A 81.818 88 11 5 359 443 744595489 744595404 9.820000e-08 69.4
56 TraesCS5D01G331100 chr2A 100.000 32 0 0 419 450 18619406 18619375 5.910000e-05 60.2
57 TraesCS5D01G331100 chr1B 84.422 597 79 11 4863 5455 622945962 622946548 4.750000e-160 575.0
58 TraesCS5D01G331100 chr1B 93.478 46 3 0 4826 4871 161298706 161298751 9.820000e-08 69.4
59 TraesCS5D01G331100 chr1B 91.489 47 3 1 4824 4870 568964892 568964937 4.570000e-06 63.9
60 TraesCS5D01G331100 chr1B 92.683 41 3 0 4826 4866 684907963 684907923 5.910000e-05 60.2
61 TraesCS5D01G331100 chr3B 84.843 574 73 9 4872 5440 131524309 131524873 2.860000e-157 566.0
62 TraesCS5D01G331100 chr3B 95.556 45 2 0 4827 4871 409049053 409049097 7.590000e-09 73.1
63 TraesCS5D01G331100 chr3B 100.000 28 0 0 1357 1384 257086483 257086510 1.000000e-02 52.8
64 TraesCS5D01G331100 chr2D 82.637 622 86 14 4856 5464 209540066 209539454 1.040000e-146 531.0
65 TraesCS5D01G331100 chr2D 97.368 114 3 0 2145 2258 176518118 176518005 1.550000e-45 195.0
66 TraesCS5D01G331100 chr2D 97.826 46 1 0 4826 4871 602947412 602947457 4.540000e-11 80.5
67 TraesCS5D01G331100 chr2D 90.909 44 4 0 4872 4915 429099412 429099455 5.910000e-05 60.2
68 TraesCS5D01G331100 chr2D 100.000 28 0 0 1357 1384 589495490 589495463 1.000000e-02 52.8
69 TraesCS5D01G331100 chr1D 82.010 617 79 21 4872 5464 360385165 360384557 3.800000e-136 496.0
70 TraesCS5D01G331100 chr1D 95.652 46 2 0 4826 4871 378866593 378866638 2.110000e-09 75.0
71 TraesCS5D01G331100 chr1D 95.238 42 2 0 4825 4866 62598824 62598783 3.530000e-07 67.6
72 TraesCS5D01G331100 chr1D 95.122 41 2 0 4826 4866 473778070 473778110 1.270000e-06 65.8
73 TraesCS5D01G331100 chr1D 91.304 46 4 0 4826 4871 71022214 71022169 4.570000e-06 63.9
74 TraesCS5D01G331100 chr3A 92.375 341 14 7 4872 5206 739730937 739731271 4.950000e-130 475.0
75 TraesCS5D01G331100 chr3A 79.310 87 15 3 359 443 47082495 47082580 2.130000e-04 58.4
76 TraesCS5D01G331100 chr7D 88.112 286 32 1 5176 5461 598746972 598747255 6.780000e-89 339.0
77 TraesCS5D01G331100 chr7D 95.798 119 2 3 2142 2259 382742647 382742531 7.230000e-44 189.0
78 TraesCS5D01G331100 chr7D 89.130 46 5 0 4870 4915 294419055 294419100 2.130000e-04 58.4
79 TraesCS5D01G331100 chr4A 97.006 167 5 0 2293 2459 734066283 734066117 1.160000e-71 281.0
80 TraesCS5D01G331100 chr4A 97.143 35 1 0 4872 4906 36540350 36540384 5.910000e-05 60.2
81 TraesCS5D01G331100 chr4A 97.059 34 1 0 4873 4906 562396830 562396863 2.130000e-04 58.4
82 TraesCS5D01G331100 chrUn 93.085 188 9 4 2286 2472 115400899 115400715 6.970000e-69 272.0
83 TraesCS5D01G331100 chrUn 92.308 39 3 0 409 447 94859855 94859893 7.650000e-04 56.5
84 TraesCS5D01G331100 chr7B 98.165 109 2 0 2143 2251 297402184 297402292 2.010000e-44 191.0
85 TraesCS5D01G331100 chr7B 93.750 48 3 0 4824 4871 5188864 5188911 7.590000e-09 73.1
86 TraesCS5D01G331100 chr7B 91.111 45 3 1 4858 4902 91246099 91246142 5.910000e-05 60.2
87 TraesCS5D01G331100 chr4D 80.460 87 13 3 360 443 8408590 8408675 4.570000e-06 63.9
88 TraesCS5D01G331100 chr4D 90.698 43 3 1 4871 4912 164888427 164888469 7.650000e-04 56.5
89 TraesCS5D01G331100 chr1A 82.278 79 8 5 364 438 558179571 558179495 4.570000e-06 63.9
90 TraesCS5D01G331100 chr6B 96.875 32 1 0 364 395 85707469 85707438 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G331100 chr5D 422017156 422022619 5463 True 10091.000000 10091 100.000000 1 5464 1 chr5D.!!$R1 5463
1 TraesCS5D01G331100 chr5B 508786084 508799430 13346 True 718.000000 3402 91.078182 66 4872 11 chr5B.!!$R5 4806
2 TraesCS5D01G331100 chr5A 535574951 535580286 5335 True 592.622222 1869 90.176778 1 4815 9 chr5A.!!$R1 4814
3 TraesCS5D01G331100 chr3D 93325925 93326513 588 False 996.000000 996 97.124000 4871 5461 1 chr3D.!!$F1 590
4 TraesCS5D01G331100 chr6D 5778246 5778838 592 True 963.000000 963 95.960000 4871 5464 1 chr6D.!!$R1 593
5 TraesCS5D01G331100 chr4B 43736371 43736959 588 False 941.000000 941 95.439000 4870 5461 1 chr4B.!!$F1 591
6 TraesCS5D01G331100 chr2B 677350929 677351515 586 False 920.000000 920 94.915000 4872 5461 1 chr2B.!!$F1 589
7 TraesCS5D01G331100 chr7A 127720883 127721459 576 False 560.000000 560 84.418000 4872 5446 1 chr7A.!!$F1 574
8 TraesCS5D01G331100 chr7A 54071673 54072231 558 True 449.550000 826 93.577000 4863 5464 2 chr7A.!!$R2 601
9 TraesCS5D01G331100 chr6A 230211324 230211827 503 True 789.000000 789 94.872000 4958 5464 1 chr6A.!!$R2 506
10 TraesCS5D01G331100 chr6A 38963925 38964510 585 True 586.000000 586 84.706000 4871 5464 1 chr6A.!!$R1 593
11 TraesCS5D01G331100 chr2A 762412022 762412618 596 True 593.000000 593 84.704000 4861 5464 1 chr2A.!!$R3 603
12 TraesCS5D01G331100 chr1B 622945962 622946548 586 False 575.000000 575 84.422000 4863 5455 1 chr1B.!!$F3 592
13 TraesCS5D01G331100 chr3B 131524309 131524873 564 False 566.000000 566 84.843000 4872 5440 1 chr3B.!!$F1 568
14 TraesCS5D01G331100 chr2D 209539454 209540066 612 True 531.000000 531 82.637000 4856 5464 1 chr2D.!!$R2 608
15 TraesCS5D01G331100 chr1D 360384557 360385165 608 True 496.000000 496 82.010000 4872 5464 1 chr1D.!!$R3 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 598 0.323816 TGACACCCAAGTTTGTGCCA 60.324 50.0 2.85 0.0 35.90 4.92 F
1425 1791 0.387750 GACGTTTTAGTCCTCGCGGT 60.388 55.0 6.13 0.0 35.22 5.68 F
2794 3619 0.038455 CCGTGGGTCCCAAATTACCA 59.962 55.0 13.78 0.0 37.51 3.25 F
2850 3675 0.599728 TTTGCTTGCACCAATTCGGC 60.600 50.0 0.00 0.0 39.03 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2236 2659 0.455005 GAAGGTACTCCCTCCGTTCG 59.545 60.0 0.00 0.0 45.47 3.95 R
3004 3835 0.034767 ACCATGTCCACAGCTCCATG 60.035 55.0 0.00 0.0 35.56 3.66 R
3827 4670 0.736325 ACACAGGCTCGTACGCAATC 60.736 55.0 11.24 0.0 0.00 2.67 R
4819 12580 0.324830 GGGCAGAGGGAGTAGTCTGT 60.325 60.0 0.00 0.0 41.99 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.532557 TCCGAACTGATTGTAGCATCATAG 58.467 41.667 0.00 0.00 0.00 2.23
42 43 5.069119 TCCGAACTGATTGTAGCATCATAGT 59.931 40.000 0.00 0.00 0.00 2.12
43 44 5.755375 CCGAACTGATTGTAGCATCATAGTT 59.245 40.000 0.00 0.00 0.00 2.24
44 45 6.292542 CCGAACTGATTGTAGCATCATAGTTG 60.293 42.308 0.00 0.00 0.00 3.16
45 46 6.476706 CGAACTGATTGTAGCATCATAGTTGA 59.523 38.462 0.00 0.00 36.00 3.18
46 47 7.170489 CGAACTGATTGTAGCATCATAGTTGAT 59.830 37.037 0.00 0.00 43.51 2.57
47 48 9.481340 GAACTGATTGTAGCATCATAGTTGATA 57.519 33.333 0.00 0.00 40.70 2.15
77 78 4.681074 TTGCGGGTGATCATAGTTGATA 57.319 40.909 0.00 0.00 42.73 2.15
120 121 0.478072 TCTTCAGCCACAACCCACAT 59.522 50.000 0.00 0.00 0.00 3.21
125 126 3.505386 TCAGCCACAACCCACATAATTT 58.495 40.909 0.00 0.00 0.00 1.82
131 132 5.407084 GCCACAACCCACATAATTTTTGTAC 59.593 40.000 0.00 0.00 0.00 2.90
139 140 6.928492 CCCACATAATTTTTGTACAAGTGCTT 59.072 34.615 8.56 4.56 0.00 3.91
164 165 4.593206 TGTGTTCTTCCTAGTGAGTCCATT 59.407 41.667 0.00 0.00 0.00 3.16
194 195 3.368427 CGAGTACCATATAGGCCACATGG 60.368 52.174 22.22 22.22 44.04 3.66
252 255 9.764363 TTATCAGAAAGTATATGTCATGACCAC 57.236 33.333 22.85 14.47 0.00 4.16
253 256 6.273071 TCAGAAAGTATATGTCATGACCACG 58.727 40.000 22.85 3.71 0.00 4.94
254 257 6.042777 CAGAAAGTATATGTCATGACCACGT 58.957 40.000 22.85 10.65 0.00 4.49
255 258 7.067737 TCAGAAAGTATATGTCATGACCACGTA 59.932 37.037 22.85 10.83 0.00 3.57
256 259 7.867909 CAGAAAGTATATGTCATGACCACGTAT 59.132 37.037 22.85 16.26 32.01 3.06
257 260 8.421784 AGAAAGTATATGTCATGACCACGTATT 58.578 33.333 22.85 9.89 30.24 1.89
258 261 8.958119 AAAGTATATGTCATGACCACGTATTT 57.042 30.769 22.85 13.66 30.24 1.40
259 262 7.946655 AGTATATGTCATGACCACGTATTTG 57.053 36.000 22.85 0.00 30.24 2.32
260 263 6.929049 AGTATATGTCATGACCACGTATTTGG 59.071 38.462 22.85 0.00 43.04 3.28
261 264 3.686916 TGTCATGACCACGTATTTGGA 57.313 42.857 22.85 0.00 39.24 3.53
262 265 4.214986 TGTCATGACCACGTATTTGGAT 57.785 40.909 22.85 0.00 39.24 3.41
263 266 3.938334 TGTCATGACCACGTATTTGGATG 59.062 43.478 22.85 0.00 39.24 3.51
264 267 3.938963 GTCATGACCACGTATTTGGATGT 59.061 43.478 15.31 0.00 39.24 3.06
265 268 5.113383 GTCATGACCACGTATTTGGATGTA 58.887 41.667 15.31 0.00 39.24 2.29
266 269 5.234329 GTCATGACCACGTATTTGGATGTAG 59.766 44.000 15.31 0.00 39.24 2.74
267 270 3.527533 TGACCACGTATTTGGATGTAGC 58.472 45.455 0.00 0.00 39.24 3.58
268 271 2.870411 GACCACGTATTTGGATGTAGCC 59.130 50.000 0.00 0.00 39.24 3.93
269 272 2.504175 ACCACGTATTTGGATGTAGCCT 59.496 45.455 0.00 0.00 39.24 4.58
270 273 3.707611 ACCACGTATTTGGATGTAGCCTA 59.292 43.478 0.00 0.00 39.24 3.93
271 274 4.202223 ACCACGTATTTGGATGTAGCCTAG 60.202 45.833 0.00 0.00 39.24 3.02
272 275 4.307432 CACGTATTTGGATGTAGCCTAGG 58.693 47.826 3.67 3.67 0.00 3.02
273 276 4.038763 CACGTATTTGGATGTAGCCTAGGA 59.961 45.833 14.75 0.00 0.00 2.94
274 277 4.038883 ACGTATTTGGATGTAGCCTAGGAC 59.961 45.833 14.75 2.83 0.00 3.85
275 278 4.560919 CGTATTTGGATGTAGCCTAGGACC 60.561 50.000 14.75 5.84 0.00 4.46
276 279 2.561209 TTGGATGTAGCCTAGGACCA 57.439 50.000 14.75 5.37 0.00 4.02
277 280 1.789523 TGGATGTAGCCTAGGACCAC 58.210 55.000 14.75 6.93 0.00 4.16
304 307 3.900601 CTGGATGTAGCCTAGGAAGACAT 59.099 47.826 14.75 17.14 33.52 3.06
324 327 7.661040 AGACATAAATCAAACCAAACTTCAGG 58.339 34.615 0.00 0.00 0.00 3.86
326 329 7.433680 ACATAAATCAAACCAAACTTCAGGTC 58.566 34.615 0.00 0.00 37.07 3.85
334 337 3.221771 CCAAACTTCAGGTCCATCACAA 58.778 45.455 0.00 0.00 0.00 3.33
346 349 3.058639 GTCCATCACAAAAGCTCTGACAC 60.059 47.826 2.91 0.00 0.00 3.67
391 396 3.228499 GGAAACGTCTCCTTCCACC 57.772 57.895 11.11 0.00 40.79 4.61
396 401 1.843368 ACGTCTCCTTCCACCGAATA 58.157 50.000 0.00 0.00 0.00 1.75
446 452 2.818130 AAAAATGCGAGCACCAATGT 57.182 40.000 0.00 0.00 0.00 2.71
461 467 5.649557 CACCAATGTCAAAAGACTTGAACA 58.350 37.500 0.00 0.00 0.00 3.18
462 468 5.745294 CACCAATGTCAAAAGACTTGAACAG 59.255 40.000 0.00 0.00 0.00 3.16
463 469 5.163519 ACCAATGTCAAAAGACTTGAACAGG 60.164 40.000 0.00 0.00 0.00 4.00
464 470 4.574599 ATGTCAAAAGACTTGAACAGGC 57.425 40.909 0.00 0.00 0.00 4.85
484 490 1.030457 CCTGATGGGATGCTTTCAGC 58.970 55.000 10.11 0.00 38.52 4.26
529 559 5.187687 TCGTTTCTCTAACACCCAAGTTTT 58.812 37.500 0.00 0.00 36.50 2.43
530 560 5.648960 TCGTTTCTCTAACACCCAAGTTTTT 59.351 36.000 0.00 0.00 36.50 1.94
554 584 9.515020 TTTTGTTTTTGACATAATCTCTGACAC 57.485 29.630 0.00 0.00 38.26 3.67
555 585 7.202016 TGTTTTTGACATAATCTCTGACACC 57.798 36.000 0.00 0.00 32.00 4.16
556 586 6.206634 TGTTTTTGACATAATCTCTGACACCC 59.793 38.462 0.00 0.00 32.00 4.61
557 587 5.497464 TTTGACATAATCTCTGACACCCA 57.503 39.130 0.00 0.00 0.00 4.51
558 588 5.497464 TTGACATAATCTCTGACACCCAA 57.503 39.130 0.00 0.00 0.00 4.12
559 589 5.089970 TGACATAATCTCTGACACCCAAG 57.910 43.478 0.00 0.00 0.00 3.61
560 590 4.532126 TGACATAATCTCTGACACCCAAGT 59.468 41.667 0.00 0.00 0.00 3.16
561 591 5.013079 TGACATAATCTCTGACACCCAAGTT 59.987 40.000 0.00 0.00 0.00 2.66
562 592 5.880901 ACATAATCTCTGACACCCAAGTTT 58.119 37.500 0.00 0.00 0.00 2.66
563 593 5.707298 ACATAATCTCTGACACCCAAGTTTG 59.293 40.000 0.00 0.00 0.00 2.93
564 594 3.864789 ATCTCTGACACCCAAGTTTGT 57.135 42.857 0.00 0.00 0.00 2.83
565 595 2.917933 TCTCTGACACCCAAGTTTGTG 58.082 47.619 1.61 1.61 38.44 3.33
566 596 1.334869 CTCTGACACCCAAGTTTGTGC 59.665 52.381 2.85 0.00 35.90 4.57
567 597 0.385390 CTGACACCCAAGTTTGTGCC 59.615 55.000 2.85 0.00 35.90 5.01
568 598 0.323816 TGACACCCAAGTTTGTGCCA 60.324 50.000 2.85 0.00 35.90 4.92
619 653 4.436998 GGAGGTGGACGGACGCAG 62.437 72.222 0.00 0.00 0.00 5.18
639 677 2.093764 AGAGAGCAGTTCCTTTCATCCG 60.094 50.000 0.00 0.00 0.00 4.18
836 878 4.838486 CACGGGTCGCTCTCGCTC 62.838 72.222 0.00 0.00 44.96 5.03
882 924 1.307084 GCCTACCCTCCTCCTGGTT 60.307 63.158 0.00 0.00 36.04 3.67
929 971 1.118356 ATCATCGTCAGAGCCTCCCC 61.118 60.000 0.00 0.00 0.00 4.81
931 973 3.015332 ATCGTCAGAGCCTCCCCCT 62.015 63.158 0.00 0.00 0.00 4.79
1073 1124 4.892965 GCAGCACCACCACCACCA 62.893 66.667 0.00 0.00 0.00 4.17
1158 1211 2.432972 GGAAAGGTAACGCCGCGA 60.433 61.111 21.79 0.00 43.70 5.87
1160 1213 2.023223 GAAAGGTAACGCCGCGACA 61.023 57.895 21.79 3.10 43.70 4.35
1185 1241 4.806339 CCGCCCTCTTCCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
1186 1242 2.689034 CGCCCTCTTCCTCCCCTT 60.689 66.667 0.00 0.00 0.00 3.95
1187 1243 1.382695 CGCCCTCTTCCTCCCCTTA 60.383 63.158 0.00 0.00 0.00 2.69
1194 1250 1.132945 TCTTCCTCCCCTTATACCCGG 60.133 57.143 0.00 0.00 0.00 5.73
1196 1252 2.222013 CCTCCCCTTATACCCGGGC 61.222 68.421 24.08 0.00 39.22 6.13
1212 1268 0.465642 GGGCTATTTCCCCGGTGAAG 60.466 60.000 0.00 0.00 40.51 3.02
1236 1296 3.267860 GCTCGCGCCTGATTCCTG 61.268 66.667 0.00 0.00 0.00 3.86
1241 1301 2.906458 CGCCTGATTCCTGCCTCT 59.094 61.111 0.00 0.00 0.00 3.69
1243 1303 1.606531 GCCTGATTCCTGCCTCTGT 59.393 57.895 0.00 0.00 0.00 3.41
1245 1305 1.615384 GCCTGATTCCTGCCTCTGTTT 60.615 52.381 0.00 0.00 0.00 2.83
1246 1306 2.800250 CCTGATTCCTGCCTCTGTTTT 58.200 47.619 0.00 0.00 0.00 2.43
1247 1307 2.751806 CCTGATTCCTGCCTCTGTTTTC 59.248 50.000 0.00 0.00 0.00 2.29
1250 1310 1.593196 TTCCTGCCTCTGTTTTCGTG 58.407 50.000 0.00 0.00 0.00 4.35
1251 1311 0.468226 TCCTGCCTCTGTTTTCGTGT 59.532 50.000 0.00 0.00 0.00 4.49
1252 1312 0.868406 CCTGCCTCTGTTTTCGTGTC 59.132 55.000 0.00 0.00 0.00 3.67
1303 1369 1.267932 CGTAAGTACCCGCTCTCTTCG 60.268 57.143 0.00 0.00 0.00 3.79
1305 1371 1.248785 AAGTACCCGCTCTCTTCGCA 61.249 55.000 0.00 0.00 0.00 5.10
1414 1778 2.929872 GCACCGCGTGACGTTTTA 59.070 55.556 6.91 0.00 41.42 1.52
1415 1779 1.154727 GCACCGCGTGACGTTTTAG 60.155 57.895 6.91 0.00 41.42 1.85
1425 1791 0.387750 GACGTTTTAGTCCTCGCGGT 60.388 55.000 6.13 0.00 35.22 5.68
1465 1831 3.664240 GGGGGATTTCGTTTGTCCT 57.336 52.632 0.00 0.00 32.55 3.85
1471 1837 4.703093 GGGGATTTCGTTTGTCCTTATTCA 59.297 41.667 0.00 0.00 32.55 2.57
1479 1845 4.730042 CGTTTGTCCTTATTCATTCATGCG 59.270 41.667 0.00 0.00 0.00 4.73
1490 1856 1.439353 ATTCATGCGGACATCGTGCC 61.439 55.000 0.00 0.00 41.72 5.01
1496 1862 0.880278 GCGGACATCGTGCCATACAT 60.880 55.000 0.00 0.00 41.72 2.29
1498 1864 1.512926 GGACATCGTGCCATACATCC 58.487 55.000 0.00 0.00 0.00 3.51
1503 1869 3.388024 ACATCGTGCCATACATCCTACTT 59.612 43.478 0.00 0.00 0.00 2.24
1507 1873 1.774254 TGCCATACATCCTACTTGGGG 59.226 52.381 0.00 0.00 36.20 4.96
1508 1874 1.073923 GCCATACATCCTACTTGGGGG 59.926 57.143 0.00 0.00 36.20 5.40
1535 1909 1.140804 GTTGCTTTTGGTGCCGTGT 59.859 52.632 0.00 0.00 0.00 4.49
1552 1926 0.948678 TGTCGCCTAGTTTTGCAACC 59.051 50.000 0.00 0.00 32.70 3.77
1563 1937 1.757682 TTTGCAACCTCCGTCTTTGT 58.242 45.000 0.00 0.00 0.00 2.83
1566 1940 3.845625 CAACCTCCGTCTTTGTTGC 57.154 52.632 0.00 0.00 32.62 4.17
1619 1993 2.369394 GTCGAGATTTGAGGGGCATTT 58.631 47.619 0.00 0.00 0.00 2.32
1620 1994 3.541632 GTCGAGATTTGAGGGGCATTTA 58.458 45.455 0.00 0.00 0.00 1.40
1639 2013 8.915871 GCATTTATTTGATGCAAGACTTAAGA 57.084 30.769 10.09 0.00 46.96 2.10
1710 2086 7.457218 TCATGAGATAAGAGAGGCCATAGATTT 59.543 37.037 5.01 0.00 0.00 2.17
1748 2124 2.223433 GCAGCCATCAATCAGTGTAAGC 60.223 50.000 0.00 0.00 0.00 3.09
1774 2192 2.224378 GCAGCAGCTAGGGACATGATTA 60.224 50.000 0.00 0.00 37.91 1.75
1781 2199 2.605825 AGGGACATGATTAGGGGGAA 57.394 50.000 0.00 0.00 0.00 3.97
1802 2225 4.078639 ACCTTCCTATGCTTATGTCTGC 57.921 45.455 0.00 0.00 0.00 4.26
1803 2226 3.455910 ACCTTCCTATGCTTATGTCTGCA 59.544 43.478 0.00 0.00 43.67 4.41
1813 2236 3.855950 GCTTATGTCTGCATTTGCTTCAC 59.144 43.478 3.94 0.00 42.66 3.18
1831 2254 6.095440 TGCTTCACATTTATAGGGAGCTTTTC 59.905 38.462 0.00 0.00 0.00 2.29
1837 2260 7.337942 CACATTTATAGGGAGCTTTTCTTGACT 59.662 37.037 0.00 0.00 0.00 3.41
1839 2262 8.831550 CATTTATAGGGAGCTTTTCTTGACTAC 58.168 37.037 0.00 0.00 0.00 2.73
1848 2271 8.017946 GGAGCTTTTCTTGACTACATAAAGTTG 58.982 37.037 0.00 0.00 0.00 3.16
1850 2273 7.013274 AGCTTTTCTTGACTACATAAAGTTGCA 59.987 33.333 0.00 0.00 0.00 4.08
1855 2278 5.956068 TGACTACATAAAGTTGCATTGCA 57.044 34.783 7.38 7.38 36.47 4.08
1856 2279 6.324561 TGACTACATAAAGTTGCATTGCAA 57.675 33.333 19.77 19.77 46.80 4.08
1881 2304 1.496060 TGCGGTCAGGTATCTTGGAT 58.504 50.000 0.00 0.00 0.00 3.41
1882 2305 1.837439 TGCGGTCAGGTATCTTGGATT 59.163 47.619 0.00 0.00 0.00 3.01
1883 2306 2.238646 TGCGGTCAGGTATCTTGGATTT 59.761 45.455 0.00 0.00 0.00 2.17
1884 2307 3.279434 GCGGTCAGGTATCTTGGATTTT 58.721 45.455 0.00 0.00 0.00 1.82
1885 2308 3.694566 GCGGTCAGGTATCTTGGATTTTT 59.305 43.478 0.00 0.00 0.00 1.94
2048 2471 4.868734 CGTATCCTAAGCTTCCTTTCGTTT 59.131 41.667 0.00 0.00 32.47 3.60
2055 2478 4.081322 AGCTTCCTTTCGTTTTGACCTA 57.919 40.909 0.00 0.00 0.00 3.08
2063 2486 6.027749 CCTTTCGTTTTGACCTATGCAATAC 58.972 40.000 0.00 0.00 0.00 1.89
2070 2493 2.093711 TGACCTATGCAATACGTGTGCT 60.094 45.455 21.90 12.68 42.69 4.40
2117 2540 5.125417 TCAATAGTGCCTGTTTCCATTTAGC 59.875 40.000 0.00 0.00 0.00 3.09
2154 2577 9.809395 TCCTGAATATATTATATACTCCCTCCG 57.191 37.037 0.00 0.00 0.00 4.63
2155 2578 9.589461 CCTGAATATATTATATACTCCCTCCGT 57.411 37.037 0.00 0.00 0.00 4.69
2159 2582 6.956202 ATATTATATACTCCCTCCGTTCGG 57.044 41.667 4.74 4.74 0.00 4.30
2160 2583 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
2161 2584 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2162 2585 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2163 2586 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2164 2587 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2165 2588 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2166 2589 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2167 2590 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2168 2591 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2169 2592 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2170 2593 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2171 2594 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2172 2595 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
2173 2596 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
2174 2597 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
2175 2598 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
2176 2599 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
2177 2600 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
2178 2601 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
2179 2602 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
2180 2603 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
2181 2604 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
2182 2605 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
2183 2606 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
2184 2607 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
2185 2608 8.592105 AATTACTTGTCACAAAAATGGATGTG 57.408 30.769 0.00 0.00 46.44 3.21
2186 2609 5.596836 ACTTGTCACAAAAATGGATGTGT 57.403 34.783 5.88 0.00 45.52 3.72
2187 2610 5.591099 ACTTGTCACAAAAATGGATGTGTC 58.409 37.500 5.88 1.72 45.52 3.67
2188 2611 5.360714 ACTTGTCACAAAAATGGATGTGTCT 59.639 36.000 5.88 0.00 45.52 3.41
2189 2612 6.545666 ACTTGTCACAAAAATGGATGTGTCTA 59.454 34.615 5.88 0.00 45.52 2.59
2190 2613 6.312399 TGTCACAAAAATGGATGTGTCTAC 57.688 37.500 5.88 0.00 45.52 2.59
2191 2614 5.825151 TGTCACAAAAATGGATGTGTCTACA 59.175 36.000 5.88 1.35 45.52 2.74
2192 2615 6.319911 TGTCACAAAAATGGATGTGTCTACAA 59.680 34.615 5.88 0.00 45.52 2.41
2193 2616 6.636850 GTCACAAAAATGGATGTGTCTACAAC 59.363 38.462 5.88 0.00 45.52 3.32
2194 2617 6.545666 TCACAAAAATGGATGTGTCTACAACT 59.454 34.615 5.88 0.00 45.52 3.16
2195 2618 7.717436 TCACAAAAATGGATGTGTCTACAACTA 59.283 33.333 5.88 0.00 45.52 2.24
2196 2619 8.349245 CACAAAAATGGATGTGTCTACAACTAA 58.651 33.333 0.00 0.00 41.51 2.24
2197 2620 8.908903 ACAAAAATGGATGTGTCTACAACTAAA 58.091 29.630 0.00 0.00 40.84 1.85
2198 2621 9.743057 CAAAAATGGATGTGTCTACAACTAAAA 57.257 29.630 0.00 0.00 40.84 1.52
2202 2625 9.733556 AATGGATGTGTCTACAACTAAAATACA 57.266 29.630 0.00 0.00 40.84 2.29
2203 2626 9.905713 ATGGATGTGTCTACAACTAAAATACAT 57.094 29.630 0.00 0.00 40.84 2.29
2204 2627 9.378551 TGGATGTGTCTACAACTAAAATACATC 57.621 33.333 0.00 0.00 40.84 3.06
2205 2628 9.601217 GGATGTGTCTACAACTAAAATACATCT 57.399 33.333 0.00 0.00 40.79 2.90
2224 2647 9.698309 ATACATCTAGATACGTTCATTTCTTGG 57.302 33.333 4.54 0.00 0.00 3.61
2225 2648 7.782049 ACATCTAGATACGTTCATTTCTTGGA 58.218 34.615 4.54 0.00 0.00 3.53
2226 2649 7.707035 ACATCTAGATACGTTCATTTCTTGGAC 59.293 37.037 4.54 0.00 0.00 4.02
2236 2659 6.543736 GTTCATTTCTTGGACGAGTAATTCC 58.456 40.000 0.00 0.00 0.00 3.01
2237 2660 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2238 2661 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2239 2662 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2240 2663 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2241 2664 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
2242 2665 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
2243 2666 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
2244 2667 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2245 2668 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2246 2669 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2247 2670 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2248 2671 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2249 2672 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2281 2704 7.469537 ACCAGCTATGTTCTATACCTATGTC 57.530 40.000 0.00 0.00 0.00 3.06
2299 2722 9.448587 ACCTATGTCAATTATTTACTACTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
2300 2723 9.930693 CCTATGTCAATTATTTACTACTCCCTC 57.069 37.037 0.00 0.00 0.00 4.30
2301 2724 9.930693 CTATGTCAATTATTTACTACTCCCTCC 57.069 37.037 0.00 0.00 0.00 4.30
2302 2725 6.812998 TGTCAATTATTTACTACTCCCTCCG 58.187 40.000 0.00 0.00 0.00 4.63
2303 2726 6.381994 TGTCAATTATTTACTACTCCCTCCGT 59.618 38.462 0.00 0.00 0.00 4.69
2304 2727 7.093201 TGTCAATTATTTACTACTCCCTCCGTT 60.093 37.037 0.00 0.00 0.00 4.44
2305 2728 7.437565 GTCAATTATTTACTACTCCCTCCGTTC 59.562 40.741 0.00 0.00 0.00 3.95
2306 2729 5.859205 TTATTTACTACTCCCTCCGTTCC 57.141 43.478 0.00 0.00 0.00 3.62
2307 2730 3.463048 TTTACTACTCCCTCCGTTCCT 57.537 47.619 0.00 0.00 0.00 3.36
2308 2731 4.591321 TTTACTACTCCCTCCGTTCCTA 57.409 45.455 0.00 0.00 0.00 2.94
2309 2732 4.591321 TTACTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
2310 2733 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2311 2734 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2312 2735 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2313 2736 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2314 2737 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2315 2738 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2316 2739 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2317 2740 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2318 2741 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2319 2742 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2320 2743 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2321 2744 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2322 2745 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2323 2746 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2324 2747 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2325 2748 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
2340 2763 9.965824 TTGTCTTTCTAAAGATTTCAAATGGAC 57.034 29.630 8.31 0.00 45.83 4.02
2341 2764 9.354673 TGTCTTTCTAAAGATTTCAAATGGACT 57.645 29.630 8.31 0.00 45.83 3.85
2347 2770 9.958180 TCTAAAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
2351 2774 9.685276 AAGATTTCAAATGGACTATCACATACA 57.315 29.630 0.00 0.00 0.00 2.29
2352 2775 9.334947 AGATTTCAAATGGACTATCACATACAG 57.665 33.333 0.00 0.00 0.00 2.74
2353 2776 9.330063 GATTTCAAATGGACTATCACATACAGA 57.670 33.333 0.00 0.00 0.00 3.41
2354 2777 9.857656 ATTTCAAATGGACTATCACATACAGAT 57.142 29.630 0.00 0.00 0.00 2.90
2355 2778 8.667076 TTCAAATGGACTATCACATACAGATG 57.333 34.615 0.00 0.00 39.16 2.90
2357 2780 8.923270 TCAAATGGACTATCACATACAGATGTA 58.077 33.333 0.00 0.00 44.82 2.29
2358 2781 9.716531 CAAATGGACTATCACATACAGATGTAT 57.283 33.333 0.00 0.00 44.82 2.29
2396 2819 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
2397 2820 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
2398 2821 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
2399 2822 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
2400 2823 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
2401 2824 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
2402 2825 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
2403 2826 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
2404 2827 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2405 2828 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2406 2829 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2407 2830 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2408 2831 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2409 2832 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2410 2833 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2411 2834 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2412 2835 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2413 2836 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2414 2837 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2415 2838 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2416 2839 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2417 2840 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2418 2841 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2419 2842 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2420 2843 6.282167 TCCGTATGTAGTCACTTGTTGAAAA 58.718 36.000 0.00 0.00 35.39 2.29
2448 2871 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2449 2872 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2450 2873 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2451 2874 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2452 2875 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2453 2876 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2454 2877 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2474 2897 6.384305 AGGGAGTAGTACATTTGCTCTTGTAT 59.616 38.462 2.52 0.00 31.48 2.29
2524 2947 4.023291 CACATATTAGCCCCAACCTGTTT 58.977 43.478 0.00 0.00 0.00 2.83
2576 2999 2.739379 GTTACTCTTCAGCCAGTCTTGC 59.261 50.000 0.00 0.00 0.00 4.01
2656 3469 2.369860 TCAGTGTCATGGAAGCACTTCT 59.630 45.455 10.07 0.00 40.99 2.85
2688 3501 0.677288 GTTGGTTACCAAGTTGGCCC 59.323 55.000 22.25 18.38 44.82 5.80
2783 3608 1.814394 GGGAATTTTACACCGTGGGTC 59.186 52.381 3.03 0.00 31.02 4.46
2787 3612 0.549950 TTTTACACCGTGGGTCCCAA 59.450 50.000 13.78 0.00 34.18 4.12
2788 3613 0.549950 TTTACACCGTGGGTCCCAAA 59.450 50.000 13.78 0.00 34.18 3.28
2789 3614 0.772384 TTACACCGTGGGTCCCAAAT 59.228 50.000 13.78 0.00 34.18 2.32
2790 3615 0.772384 TACACCGTGGGTCCCAAATT 59.228 50.000 13.78 0.00 34.18 1.82
2792 3617 1.170442 CACCGTGGGTCCCAAATTAC 58.830 55.000 13.78 0.00 34.18 1.89
2793 3618 0.038599 ACCGTGGGTCCCAAATTACC 59.961 55.000 13.78 0.00 34.18 2.85
2794 3619 0.038455 CCGTGGGTCCCAAATTACCA 59.962 55.000 13.78 0.00 37.51 3.25
2795 3620 1.170442 CGTGGGTCCCAAATTACCAC 58.830 55.000 13.78 0.00 46.14 4.16
2796 3621 1.552578 GTGGGTCCCAAATTACCACC 58.447 55.000 13.78 0.00 44.40 4.61
2797 3622 1.158904 TGGGTCCCAAATTACCACCA 58.841 50.000 8.65 0.00 37.51 4.17
2798 3623 1.503784 TGGGTCCCAAATTACCACCAA 59.496 47.619 8.65 0.00 37.51 3.67
2799 3624 2.090719 TGGGTCCCAAATTACCACCAAA 60.091 45.455 8.65 0.00 37.51 3.28
2850 3675 0.599728 TTTGCTTGCACCAATTCGGC 60.600 50.000 0.00 0.00 39.03 5.54
3200 4031 4.755123 CGACTTTGTCTTTTCCTGGTACAT 59.245 41.667 0.00 0.00 38.20 2.29
3219 4053 3.375299 ACATAGGTCGCAAATTCTTCTGC 59.625 43.478 0.00 0.00 35.14 4.26
3266 4101 6.741992 TGCTTTATTGGAATGTACTGAGTG 57.258 37.500 0.00 0.00 0.00 3.51
3321 4160 6.686484 ATTTATTTTGTTCCTTCTGGGCTT 57.314 33.333 0.00 0.00 34.39 4.35
3322 4161 6.493189 TTTATTTTGTTCCTTCTGGGCTTT 57.507 33.333 0.00 0.00 34.39 3.51
3323 4162 4.607293 ATTTTGTTCCTTCTGGGCTTTC 57.393 40.909 0.00 0.00 34.39 2.62
3476 4316 5.814764 CAGATGCTGCTGAATTTCTACTT 57.185 39.130 0.00 0.00 38.14 2.24
3477 4317 5.570344 CAGATGCTGCTGAATTTCTACTTG 58.430 41.667 0.00 0.00 38.14 3.16
3499 4339 7.442666 ACTTGTCTTTCTTGTCCATTTCTCTAC 59.557 37.037 0.00 0.00 0.00 2.59
3500 4340 7.067496 TGTCTTTCTTGTCCATTTCTCTACT 57.933 36.000 0.00 0.00 0.00 2.57
3501 4341 7.155328 TGTCTTTCTTGTCCATTTCTCTACTC 58.845 38.462 0.00 0.00 0.00 2.59
3539 4379 3.711086 AGATGTATAGTTGCTGCTGTCG 58.289 45.455 0.00 0.00 0.00 4.35
3764 4607 4.636206 GGTAGTTTAGTGATTGGCCTGAAG 59.364 45.833 3.32 0.00 0.00 3.02
3827 4670 9.912634 AATATTACAGACTGGAAAAATGTTGTG 57.087 29.630 3.70 0.00 0.00 3.33
3860 4703 1.004745 CCTGTGTGGGCTATTGGAACT 59.995 52.381 0.00 0.00 0.00 3.01
4000 4843 7.654022 TGTTTCTTTTCTTGGTCTTATTGGT 57.346 32.000 0.00 0.00 0.00 3.67
4003 4846 8.626526 GTTTCTTTTCTTGGTCTTATTGGTACA 58.373 33.333 0.00 0.00 0.00 2.90
4117 5125 4.127907 GCAAGCTAGTACCCCAATACTTC 58.872 47.826 0.00 0.00 36.74 3.01
4126 5134 1.544759 CCCCAATACTTCGGGTATGGC 60.545 57.143 0.00 0.00 41.30 4.40
4135 5143 3.181465 ACTTCGGGTATGGCTAACATGAG 60.181 47.826 0.00 0.00 40.82 2.90
4137 5145 2.769663 TCGGGTATGGCTAACATGAGTT 59.230 45.455 0.00 0.00 40.82 3.01
4138 5146 3.962063 TCGGGTATGGCTAACATGAGTTA 59.038 43.478 0.00 0.00 40.82 2.24
4140 5148 4.690748 CGGGTATGGCTAACATGAGTTATG 59.309 45.833 0.00 0.00 40.82 1.90
4141 5149 5.003804 GGGTATGGCTAACATGAGTTATGG 58.996 45.833 0.00 0.00 40.82 2.74
4147 5155 4.999950 GGCTAACATGAGTTATGGATCCTG 59.000 45.833 14.23 2.37 41.25 3.86
4161 5169 3.259123 TGGATCCTGTGATATGACCATCG 59.741 47.826 14.23 0.00 0.00 3.84
4162 5170 3.259374 GGATCCTGTGATATGACCATCGT 59.741 47.826 3.84 0.00 0.00 3.73
4282 5291 8.634335 TTTGAAGGTATGAGAAATTGACATCA 57.366 30.769 0.00 0.00 0.00 3.07
4318 5327 9.193133 CAGACAAAAGAGACGAACTTATAGAAA 57.807 33.333 0.00 0.00 0.00 2.52
4319 5328 9.413048 AGACAAAAGAGACGAACTTATAGAAAG 57.587 33.333 0.00 0.00 0.00 2.62
4320 5329 9.408069 GACAAAAGAGACGAACTTATAGAAAGA 57.592 33.333 0.00 0.00 0.00 2.52
4439 5449 1.339055 GCCACCATCTGCAACTCAGTA 60.339 52.381 0.00 0.00 43.32 2.74
4471 5481 4.833478 AAGTTACAGCCTGATGTGAGAT 57.167 40.909 0.00 0.00 34.56 2.75
4535 5545 3.428282 GGCCACCGCGTCGAAAAT 61.428 61.111 4.92 0.00 35.02 1.82
4730 11921 3.058432 CACCTGAATTGAAGTGTGCTCAG 60.058 47.826 0.00 0.00 0.00 3.35
4816 12577 5.696822 TGAAGTCATACTACGTGTTGAGAC 58.303 41.667 0.00 1.01 0.00 3.36
4819 12580 6.080648 AGTCATACTACGTGTTGAGACAAA 57.919 37.500 0.00 0.00 37.57 2.83
4834 12595 4.083565 GAGACAAACAGACTACTCCCTCT 58.916 47.826 0.00 0.00 0.00 3.69
4836 12597 2.300437 ACAAACAGACTACTCCCTCTGC 59.700 50.000 0.00 0.00 37.96 4.26
4837 12598 1.562783 AACAGACTACTCCCTCTGCC 58.437 55.000 0.00 0.00 37.96 4.85
4838 12599 0.324830 ACAGACTACTCCCTCTGCCC 60.325 60.000 0.00 0.00 37.96 5.36
4839 12600 1.045911 CAGACTACTCCCTCTGCCCC 61.046 65.000 0.00 0.00 0.00 5.80
4840 12601 2.042843 ACTACTCCCTCTGCCCCG 60.043 66.667 0.00 0.00 0.00 5.73
4903 12664 3.049674 CGTGCGTTGCCATGGAGT 61.050 61.111 18.40 0.00 0.00 3.85
4906 12667 0.447801 GTGCGTTGCCATGGAGTAAG 59.552 55.000 18.40 2.97 0.00 2.34
4964 12725 0.895530 TAAGACCTCAAGGCTCCACG 59.104 55.000 0.00 0.00 39.32 4.94
5432 14103 2.124151 GGCCCCATCGTCTGCAAT 60.124 61.111 0.00 0.00 0.00 3.56
5461 15074 3.740832 TGTACGTGCAAGTTGATCTTCTG 59.259 43.478 11.38 0.00 33.63 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.820386 TGCTACAATCAGTTCGGAAATTAGTAA 59.180 33.333 0.00 0.00 0.00 2.24
10 11 7.324935 TGCTACAATCAGTTCGGAAATTAGTA 58.675 34.615 0.00 0.00 0.00 1.82
53 54 4.075682 TCAACTATGATCACCCGCAAAAA 58.924 39.130 0.00 0.00 0.00 1.94
54 55 3.680490 TCAACTATGATCACCCGCAAAA 58.320 40.909 0.00 0.00 0.00 2.44
55 56 3.342377 TCAACTATGATCACCCGCAAA 57.658 42.857 0.00 0.00 0.00 3.68
56 57 3.558931 ATCAACTATGATCACCCGCAA 57.441 42.857 0.00 0.00 42.75 4.85
57 58 4.890158 ATATCAACTATGATCACCCGCA 57.110 40.909 0.00 0.00 42.75 5.69
58 59 5.120830 GTCAATATCAACTATGATCACCCGC 59.879 44.000 0.00 0.00 42.75 6.13
59 60 6.459066 AGTCAATATCAACTATGATCACCCG 58.541 40.000 0.00 0.00 42.75 5.28
60 61 7.445121 TGAGTCAATATCAACTATGATCACCC 58.555 38.462 0.00 0.00 42.75 4.61
61 62 9.149225 GATGAGTCAATATCAACTATGATCACC 57.851 37.037 0.00 0.00 42.75 4.02
62 63 9.149225 GGATGAGTCAATATCAACTATGATCAC 57.851 37.037 0.00 0.00 42.75 3.06
63 64 9.097946 AGGATGAGTCAATATCAACTATGATCA 57.902 33.333 0.00 0.00 42.75 2.92
64 65 9.941325 AAGGATGAGTCAATATCAACTATGATC 57.059 33.333 0.00 0.00 42.75 2.92
77 78 3.639094 CTCCGGAGTAAGGATGAGTCAAT 59.361 47.826 24.04 0.00 37.13 2.57
104 105 2.897271 ATTATGTGGGTTGTGGCTGA 57.103 45.000 0.00 0.00 0.00 4.26
131 132 2.684881 AGGAAGAACACACAAGCACTTG 59.315 45.455 8.82 8.82 45.58 3.16
139 140 3.321111 GGACTCACTAGGAAGAACACACA 59.679 47.826 0.00 0.00 0.00 3.72
164 165 6.722590 TGGCCTATATGGTACTCGAGAAATAA 59.277 38.462 21.68 0.49 38.35 1.40
194 195 4.434520 GGACGGGCTAAGATTATATCAGC 58.565 47.826 0.00 0.00 0.00 4.26
196 197 4.082408 CACGGACGGGCTAAGATTATATCA 60.082 45.833 0.00 0.00 0.00 2.15
228 229 6.925718 CGTGGTCATGACATATACTTTCTGAT 59.074 38.462 26.47 0.00 0.00 2.90
242 243 3.938963 ACATCCAAATACGTGGTCATGAC 59.061 43.478 17.91 17.91 39.88 3.06
243 244 4.214986 ACATCCAAATACGTGGTCATGA 57.785 40.909 0.00 0.00 39.88 3.07
245 248 4.127171 GCTACATCCAAATACGTGGTCAT 58.873 43.478 0.00 0.00 39.88 3.06
252 255 4.557205 GTCCTAGGCTACATCCAAATACG 58.443 47.826 2.96 0.00 0.00 3.06
253 256 4.347000 TGGTCCTAGGCTACATCCAAATAC 59.653 45.833 2.96 0.00 0.00 1.89
254 257 4.347000 GTGGTCCTAGGCTACATCCAAATA 59.653 45.833 2.96 0.00 0.00 1.40
255 258 3.136626 GTGGTCCTAGGCTACATCCAAAT 59.863 47.826 2.96 0.00 0.00 2.32
256 259 2.504175 GTGGTCCTAGGCTACATCCAAA 59.496 50.000 2.96 0.00 0.00 3.28
257 260 2.116238 GTGGTCCTAGGCTACATCCAA 58.884 52.381 2.96 0.00 0.00 3.53
258 261 1.789523 GTGGTCCTAGGCTACATCCA 58.210 55.000 2.96 2.99 0.00 3.41
259 262 0.674534 CGTGGTCCTAGGCTACATCC 59.325 60.000 2.96 0.35 0.00 3.51
260 263 1.400737 ACGTGGTCCTAGGCTACATC 58.599 55.000 2.96 0.00 0.00 3.06
261 264 2.742428 TACGTGGTCCTAGGCTACAT 57.258 50.000 2.96 0.00 0.00 2.29
262 265 2.174210 AGATACGTGGTCCTAGGCTACA 59.826 50.000 2.96 0.00 0.00 2.74
263 266 2.553172 CAGATACGTGGTCCTAGGCTAC 59.447 54.545 2.96 6.76 0.00 3.58
264 267 2.488528 CCAGATACGTGGTCCTAGGCTA 60.489 54.545 2.96 0.00 32.32 3.93
265 268 1.693627 CAGATACGTGGTCCTAGGCT 58.306 55.000 2.96 0.00 0.00 4.58
266 269 0.674534 CCAGATACGTGGTCCTAGGC 59.325 60.000 2.96 0.00 32.32 3.93
267 270 2.359981 TCCAGATACGTGGTCCTAGG 57.640 55.000 0.82 0.82 38.88 3.02
268 271 3.223435 ACATCCAGATACGTGGTCCTAG 58.777 50.000 0.00 0.00 38.88 3.02
269 272 3.308035 ACATCCAGATACGTGGTCCTA 57.692 47.619 0.00 0.00 38.88 2.94
270 273 2.160721 ACATCCAGATACGTGGTCCT 57.839 50.000 0.00 0.00 38.88 3.85
271 274 2.288273 GCTACATCCAGATACGTGGTCC 60.288 54.545 0.00 0.00 38.88 4.46
272 275 2.288273 GGCTACATCCAGATACGTGGTC 60.288 54.545 0.00 0.00 38.88 4.02
273 276 1.687123 GGCTACATCCAGATACGTGGT 59.313 52.381 0.00 0.00 38.88 4.16
274 277 1.964223 AGGCTACATCCAGATACGTGG 59.036 52.381 0.00 0.00 39.19 4.94
275 278 3.191581 CCTAGGCTACATCCAGATACGTG 59.808 52.174 0.00 0.00 0.00 4.49
276 279 3.074094 TCCTAGGCTACATCCAGATACGT 59.926 47.826 2.96 0.00 0.00 3.57
277 280 3.687125 TCCTAGGCTACATCCAGATACG 58.313 50.000 2.96 0.00 0.00 3.06
304 307 5.894393 TGGACCTGAAGTTTGGTTTGATTTA 59.106 36.000 3.50 0.00 36.59 1.40
324 327 3.058639 GTGTCAGAGCTTTTGTGATGGAC 60.059 47.826 0.00 0.00 30.99 4.02
326 329 2.227388 GGTGTCAGAGCTTTTGTGATGG 59.773 50.000 0.00 0.00 30.99 3.51
334 337 2.736670 AACTTGGGTGTCAGAGCTTT 57.263 45.000 0.00 0.00 0.00 3.51
375 378 0.754472 TTCGGTGGAAGGAGACGTTT 59.246 50.000 0.00 0.00 0.00 3.60
376 379 0.974383 ATTCGGTGGAAGGAGACGTT 59.026 50.000 0.00 0.00 35.19 3.99
383 386 4.881273 TGATGATGTTTATTCGGTGGAAGG 59.119 41.667 0.00 0.00 35.19 3.46
446 452 2.091885 AGGGCCTGTTCAAGTCTTTTGA 60.092 45.455 4.50 0.00 0.00 2.69
529 559 8.134895 GGTGTCAGAGATTATGTCAAAAACAAA 58.865 33.333 0.00 0.00 42.37 2.83
530 560 7.255451 GGGTGTCAGAGATTATGTCAAAAACAA 60.255 37.037 0.00 0.00 42.37 2.83
531 561 6.206634 GGGTGTCAGAGATTATGTCAAAAACA 59.793 38.462 0.00 0.00 43.51 2.83
532 562 6.206634 TGGGTGTCAGAGATTATGTCAAAAAC 59.793 38.462 0.00 0.00 0.00 2.43
533 563 6.303054 TGGGTGTCAGAGATTATGTCAAAAA 58.697 36.000 0.00 0.00 0.00 1.94
534 564 5.875224 TGGGTGTCAGAGATTATGTCAAAA 58.125 37.500 0.00 0.00 0.00 2.44
535 565 5.497464 TGGGTGTCAGAGATTATGTCAAA 57.503 39.130 0.00 0.00 0.00 2.69
536 566 5.013079 ACTTGGGTGTCAGAGATTATGTCAA 59.987 40.000 0.00 0.00 0.00 3.18
537 567 4.532126 ACTTGGGTGTCAGAGATTATGTCA 59.468 41.667 0.00 0.00 0.00 3.58
538 568 5.091261 ACTTGGGTGTCAGAGATTATGTC 57.909 43.478 0.00 0.00 0.00 3.06
539 569 5.505181 AACTTGGGTGTCAGAGATTATGT 57.495 39.130 0.00 0.00 0.00 2.29
540 570 5.707298 ACAAACTTGGGTGTCAGAGATTATG 59.293 40.000 0.00 0.00 0.00 1.90
541 571 5.707298 CACAAACTTGGGTGTCAGAGATTAT 59.293 40.000 0.00 0.00 0.00 1.28
542 572 5.063204 CACAAACTTGGGTGTCAGAGATTA 58.937 41.667 0.00 0.00 0.00 1.75
543 573 3.885297 CACAAACTTGGGTGTCAGAGATT 59.115 43.478 0.00 0.00 0.00 2.40
544 574 3.480470 CACAAACTTGGGTGTCAGAGAT 58.520 45.455 0.00 0.00 0.00 2.75
545 575 2.917933 CACAAACTTGGGTGTCAGAGA 58.082 47.619 0.00 0.00 0.00 3.10
546 576 1.334869 GCACAAACTTGGGTGTCAGAG 59.665 52.381 0.00 0.00 37.35 3.35
547 577 1.388547 GCACAAACTTGGGTGTCAGA 58.611 50.000 0.00 0.00 37.35 3.27
548 578 0.385390 GGCACAAACTTGGGTGTCAG 59.615 55.000 0.00 0.00 39.36 3.51
549 579 0.323816 TGGCACAAACTTGGGTGTCA 60.324 50.000 0.00 0.00 46.37 3.58
550 580 2.499214 TGGCACAAACTTGGGTGTC 58.501 52.632 0.00 0.00 39.97 3.67
551 581 4.774820 TGGCACAAACTTGGGTGT 57.225 50.000 0.00 0.00 37.35 4.16
563 593 3.123804 CAATGTACGAGGTAGATGGCAC 58.876 50.000 0.00 0.00 0.00 5.01
564 594 2.483013 GCAATGTACGAGGTAGATGGCA 60.483 50.000 7.25 0.00 38.23 4.92
565 595 2.135933 GCAATGTACGAGGTAGATGGC 58.864 52.381 0.00 0.00 32.89 4.40
566 596 2.755650 GGCAATGTACGAGGTAGATGG 58.244 52.381 0.00 0.00 0.00 3.51
567 597 2.394708 CGGCAATGTACGAGGTAGATG 58.605 52.381 0.00 0.00 0.00 2.90
568 598 1.340248 CCGGCAATGTACGAGGTAGAT 59.660 52.381 0.00 0.00 0.00 1.98
617 651 3.269178 GGATGAAAGGAACTGCTCTCTG 58.731 50.000 0.00 0.00 40.86 3.35
619 653 2.275318 CGGATGAAAGGAACTGCTCTC 58.725 52.381 0.00 0.00 40.86 3.20
639 677 2.983592 CCCTGGAACCCACGCAAC 60.984 66.667 0.00 0.00 0.00 4.17
882 924 2.194597 GCCACCACACCAACCAGA 59.805 61.111 0.00 0.00 0.00 3.86
929 971 4.760047 CGGTTGGTGGGCGAGAGG 62.760 72.222 0.00 0.00 0.00 3.69
1071 1122 2.046892 CGGAGCTGGTGGTTCTGG 60.047 66.667 0.00 0.00 0.00 3.86
1158 1211 3.728373 GAGGGCGGGGATTGGTGT 61.728 66.667 0.00 0.00 0.00 4.16
1160 1213 2.614013 AAGAGGGCGGGGATTGGT 60.614 61.111 0.00 0.00 0.00 3.67
1184 1240 3.345508 GGGAAATAGCCCGGGTATAAG 57.654 52.381 24.63 0.00 38.58 1.73
1194 1250 0.465642 CCTTCACCGGGGAAATAGCC 60.466 60.000 21.87 0.00 0.00 3.93
1196 1252 2.801077 AACCTTCACCGGGGAAATAG 57.199 50.000 21.87 14.44 0.00 1.73
1236 1296 1.204312 GCGACACGAAAACAGAGGC 59.796 57.895 0.00 0.00 0.00 4.70
1241 1301 1.647346 AGAACTGCGACACGAAAACA 58.353 45.000 0.00 0.00 0.00 2.83
1243 1303 1.256895 CGAAGAACTGCGACACGAAAA 59.743 47.619 0.00 0.00 0.00 2.29
1245 1305 0.248743 ACGAAGAACTGCGACACGAA 60.249 50.000 9.29 0.00 0.00 3.85
1246 1306 0.659417 GACGAAGAACTGCGACACGA 60.659 55.000 9.29 0.00 0.00 4.35
1247 1307 1.767388 GACGAAGAACTGCGACACG 59.233 57.895 9.29 0.00 0.00 4.49
1250 1310 1.066114 CTCCGACGAAGAACTGCGAC 61.066 60.000 9.29 1.98 0.00 5.19
1251 1311 1.209383 CTCCGACGAAGAACTGCGA 59.791 57.895 9.29 0.00 0.00 5.10
1252 1312 1.801913 CCTCCGACGAAGAACTGCG 60.802 63.158 0.00 0.25 0.00 5.18
1335 1401 2.031163 CGAGATTCCCCATCGGCC 59.969 66.667 0.00 0.00 36.93 6.13
1425 1791 2.560119 GGCGACAACCACAATGCCA 61.560 57.895 0.00 0.00 42.03 4.92
1465 1831 4.024977 CACGATGTCCGCATGAATGAATAA 60.025 41.667 0.00 0.00 43.32 1.40
1471 1837 1.439353 GGCACGATGTCCGCATGAAT 61.439 55.000 0.00 0.00 43.32 2.57
1479 1845 1.070758 AGGATGTATGGCACGATGTCC 59.929 52.381 0.00 0.00 0.00 4.02
1507 1873 3.193479 CACCAAAAGCAACTCTAATCCCC 59.807 47.826 0.00 0.00 0.00 4.81
1508 1874 3.367395 GCACCAAAAGCAACTCTAATCCC 60.367 47.826 0.00 0.00 0.00 3.85
1535 1909 3.717842 AGGTTGCAAAACTAGGCGA 57.282 47.368 0.00 0.00 46.27 5.54
1552 1926 0.537371 AAGGGGCAACAAAGACGGAG 60.537 55.000 0.00 0.00 39.74 4.63
1563 1937 0.998928 TGAAGGCTATCAAGGGGCAA 59.001 50.000 0.00 0.00 0.00 4.52
1566 1940 2.707791 TCTGATGAAGGCTATCAAGGGG 59.292 50.000 1.88 0.00 34.41 4.79
1619 1993 7.607607 TCTGCTTCTTAAGTCTTGCATCAAATA 59.392 33.333 1.63 0.00 0.00 1.40
1620 1994 6.432162 TCTGCTTCTTAAGTCTTGCATCAAAT 59.568 34.615 1.63 0.00 0.00 2.32
1710 2086 3.060614 GCCCCCTGCTGAATGCCTA 62.061 63.158 0.00 0.00 42.00 3.93
1748 2124 2.821366 CCCTAGCTGCTGCAACCG 60.821 66.667 18.42 2.00 42.74 4.44
1781 2199 3.455910 TGCAGACATAAGCATAGGAAGGT 59.544 43.478 0.00 0.00 35.51 3.50
1797 2215 6.694411 CCTATAAATGTGAAGCAAATGCAGAC 59.306 38.462 8.28 1.79 45.16 3.51
1802 2225 6.040166 AGCTCCCTATAAATGTGAAGCAAATG 59.960 38.462 0.00 0.00 0.00 2.32
1803 2226 6.131961 AGCTCCCTATAAATGTGAAGCAAAT 58.868 36.000 0.00 0.00 0.00 2.32
1813 2236 7.872113 AGTCAAGAAAAGCTCCCTATAAATG 57.128 36.000 0.00 0.00 0.00 2.32
1831 2254 6.380995 TGCAATGCAACTTTATGTAGTCAAG 58.619 36.000 5.01 0.00 34.76 3.02
1855 2278 3.686016 AGATACCTGACCGCAACATTTT 58.314 40.909 0.00 0.00 0.00 1.82
1856 2279 3.350219 AGATACCTGACCGCAACATTT 57.650 42.857 0.00 0.00 0.00 2.32
1863 2286 2.622064 AATCCAAGATACCTGACCGC 57.378 50.000 0.00 0.00 0.00 5.68
1944 2367 5.129320 TCAGAGACAAGCTTGCTAATGGATA 59.871 40.000 26.27 8.26 0.00 2.59
2018 2441 3.365164 GGAAGCTTAGGATACGCGTAGAG 60.365 52.174 24.78 16.13 41.23 2.43
2048 2471 2.675844 GCACACGTATTGCATAGGTCAA 59.324 45.455 14.76 0.00 39.93 3.18
2055 2478 3.641437 AAACAAGCACACGTATTGCAT 57.359 38.095 20.15 8.38 42.83 3.96
2063 2486 6.604012 TGTATACCAATTAAACAAGCACACG 58.396 36.000 0.00 0.00 0.00 4.49
2147 2570 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2148 2571 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2149 2572 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2152 2575 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
2154 2577 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
2155 2578 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
2156 2579 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
2157 2580 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
2158 2581 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
2159 2582 8.702438 CACATCCATTTTTGTGACAAGTAATTC 58.298 33.333 0.00 0.00 44.74 2.17
2160 2583 8.203485 ACACATCCATTTTTGTGACAAGTAATT 58.797 29.630 9.80 0.00 44.74 1.40
2161 2584 7.725251 ACACATCCATTTTTGTGACAAGTAAT 58.275 30.769 9.80 0.32 44.74 1.89
2162 2585 7.068103 AGACACATCCATTTTTGTGACAAGTAA 59.932 33.333 9.80 0.00 44.74 2.24
2163 2586 6.545666 AGACACATCCATTTTTGTGACAAGTA 59.454 34.615 9.80 0.00 44.74 2.24
2164 2587 5.360714 AGACACATCCATTTTTGTGACAAGT 59.639 36.000 9.80 0.00 44.74 3.16
2165 2588 5.835257 AGACACATCCATTTTTGTGACAAG 58.165 37.500 9.80 0.00 44.74 3.16
2166 2589 5.850557 AGACACATCCATTTTTGTGACAA 57.149 34.783 9.80 0.00 44.74 3.18
2167 2590 5.825151 TGTAGACACATCCATTTTTGTGACA 59.175 36.000 9.80 1.85 44.74 3.58
2168 2591 6.312399 TGTAGACACATCCATTTTTGTGAC 57.688 37.500 9.80 4.04 44.74 3.67
2169 2592 6.545666 AGTTGTAGACACATCCATTTTTGTGA 59.454 34.615 9.80 0.00 44.74 3.58
2170 2593 6.738114 AGTTGTAGACACATCCATTTTTGTG 58.262 36.000 1.74 1.74 46.76 3.33
2171 2594 6.959639 AGTTGTAGACACATCCATTTTTGT 57.040 33.333 0.00 0.00 33.76 2.83
2172 2595 9.743057 TTTTAGTTGTAGACACATCCATTTTTG 57.257 29.630 0.00 0.00 33.76 2.44
2176 2599 9.733556 TGTATTTTAGTTGTAGACACATCCATT 57.266 29.630 0.00 0.00 33.76 3.16
2177 2600 9.905713 ATGTATTTTAGTTGTAGACACATCCAT 57.094 29.630 0.00 0.00 33.76 3.41
2178 2601 9.378551 GATGTATTTTAGTTGTAGACACATCCA 57.621 33.333 0.00 0.00 35.74 3.41
2179 2602 9.601217 AGATGTATTTTAGTTGTAGACACATCC 57.399 33.333 0.00 0.00 40.21 3.51
2198 2621 9.698309 CCAAGAAATGAACGTATCTAGATGTAT 57.302 33.333 15.79 0.00 0.00 2.29
2199 2622 8.909923 TCCAAGAAATGAACGTATCTAGATGTA 58.090 33.333 15.79 0.00 0.00 2.29
2200 2623 7.707035 GTCCAAGAAATGAACGTATCTAGATGT 59.293 37.037 15.79 2.60 0.00 3.06
2201 2624 7.096436 CGTCCAAGAAATGAACGTATCTAGATG 60.096 40.741 15.79 1.92 0.00 2.90
2202 2625 6.918569 CGTCCAAGAAATGAACGTATCTAGAT 59.081 38.462 10.73 10.73 0.00 1.98
2203 2626 6.094464 TCGTCCAAGAAATGAACGTATCTAGA 59.906 38.462 0.00 0.00 35.04 2.43
2204 2627 6.263344 TCGTCCAAGAAATGAACGTATCTAG 58.737 40.000 0.00 0.00 35.04 2.43
2205 2628 6.127814 ACTCGTCCAAGAAATGAACGTATCTA 60.128 38.462 0.00 0.00 35.04 1.98
2206 2629 5.068234 TCGTCCAAGAAATGAACGTATCT 57.932 39.130 0.00 0.00 35.04 1.98
2207 2630 4.863131 ACTCGTCCAAGAAATGAACGTATC 59.137 41.667 0.00 0.00 35.04 2.24
2208 2631 4.817517 ACTCGTCCAAGAAATGAACGTAT 58.182 39.130 0.00 0.00 35.04 3.06
2209 2632 4.247267 ACTCGTCCAAGAAATGAACGTA 57.753 40.909 0.00 0.00 35.04 3.57
2210 2633 3.107642 ACTCGTCCAAGAAATGAACGT 57.892 42.857 0.00 0.00 35.04 3.99
2211 2634 5.779806 ATTACTCGTCCAAGAAATGAACG 57.220 39.130 0.00 0.00 34.80 3.95
2212 2635 6.543736 GGAATTACTCGTCCAAGAAATGAAC 58.456 40.000 0.00 0.00 33.79 3.18
2213 2636 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2214 2637 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2215 2638 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2216 2639 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2217 2640 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2218 2641 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
2219 2642 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
2220 2643 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
2221 2644 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
2222 2645 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2223 2646 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2224 2647 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2225 2648 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2226 2649 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2227 2650 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2228 2651 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2229 2652 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2230 2653 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2231 2654 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2232 2655 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2233 2656 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
2234 2657 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
2235 2658 0.969409 AAGGTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 45.47 4.30
2236 2659 0.455005 GAAGGTACTCCCTCCGTTCG 59.545 60.000 0.00 0.00 45.47 3.95
2237 2660 1.849977 AGAAGGTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 45.47 3.95
2238 2661 2.622714 GGTAGAAGGTACTCCCTCCGTT 60.623 54.545 0.00 0.00 45.47 4.44
2239 2662 1.064091 GGTAGAAGGTACTCCCTCCGT 60.064 57.143 0.00 0.00 45.47 4.69
2240 2663 1.064166 TGGTAGAAGGTACTCCCTCCG 60.064 57.143 0.00 0.00 45.47 4.63
2241 2664 2.668625 CTGGTAGAAGGTACTCCCTCC 58.331 57.143 0.00 0.00 45.47 4.30
2242 2665 2.033372 GCTGGTAGAAGGTACTCCCTC 58.967 57.143 0.00 0.00 45.47 4.30
2244 2667 2.162264 AGCTGGTAGAAGGTACTCCC 57.838 55.000 0.00 0.00 38.49 4.30
2245 2668 4.216708 ACATAGCTGGTAGAAGGTACTCC 58.783 47.826 0.00 0.00 38.49 3.85
2246 2669 5.595133 AGAACATAGCTGGTAGAAGGTACTC 59.405 44.000 0.00 0.00 38.49 2.59
2248 2671 5.855740 AGAACATAGCTGGTAGAAGGTAC 57.144 43.478 0.00 0.00 33.23 3.34
2249 2672 7.668886 GGTATAGAACATAGCTGGTAGAAGGTA 59.331 40.741 0.00 0.00 34.82 3.08
2281 2704 6.704937 GGAACGGAGGGAGTAGTAAATAATTG 59.295 42.308 0.00 0.00 0.00 2.32
2292 2715 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2293 2716 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2294 2717 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2295 2718 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2296 2719 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2297 2720 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2298 2721 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2299 2722 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
2314 2737 9.965824 GTCCATTTGAAATCTTTAGAAAGACAA 57.034 29.630 6.85 4.98 46.80 3.18
2315 2738 9.354673 AGTCCATTTGAAATCTTTAGAAAGACA 57.645 29.630 6.85 0.00 46.80 3.41
2321 2744 9.958180 TGTGATAGTCCATTTGAAATCTTTAGA 57.042 29.630 0.00 0.00 0.00 2.10
2325 2748 9.685276 TGTATGTGATAGTCCATTTGAAATCTT 57.315 29.630 0.00 0.00 0.00 2.40
2326 2749 9.334947 CTGTATGTGATAGTCCATTTGAAATCT 57.665 33.333 0.00 0.00 0.00 2.40
2327 2750 9.330063 TCTGTATGTGATAGTCCATTTGAAATC 57.670 33.333 0.00 0.00 0.00 2.17
2328 2751 9.857656 ATCTGTATGTGATAGTCCATTTGAAAT 57.142 29.630 0.00 0.00 0.00 2.17
2329 2752 9.112725 CATCTGTATGTGATAGTCCATTTGAAA 57.887 33.333 0.00 0.00 0.00 2.69
2330 2753 8.267183 ACATCTGTATGTGATAGTCCATTTGAA 58.733 33.333 0.00 0.00 44.79 2.69
2331 2754 7.795047 ACATCTGTATGTGATAGTCCATTTGA 58.205 34.615 0.00 0.00 44.79 2.69
2332 2755 9.716531 ATACATCTGTATGTGATAGTCCATTTG 57.283 33.333 2.10 0.00 45.99 2.32
2361 2784 9.036980 AGTGAACCTACACTCTAAAATATGACT 57.963 33.333 0.00 0.00 46.36 3.41
2375 2798 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
2376 2799 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
2377 2800 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
2378 2801 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
2379 2802 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
2380 2803 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
2381 2804 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
2382 2805 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2383 2806 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2384 2807 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2385 2808 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2386 2809 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2387 2810 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2388 2811 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2389 2812 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2390 2813 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2391 2814 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2392 2815 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2393 2816 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2394 2817 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2395 2818 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2396 2819 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2397 2820 6.202188 AGTTTTCAACAAGTGACTACATACGG 59.798 38.462 0.00 0.00 35.39 4.02
2398 2821 7.169308 AGAGTTTTCAACAAGTGACTACATACG 59.831 37.037 0.00 0.00 35.39 3.06
2399 2822 8.366671 AGAGTTTTCAACAAGTGACTACATAC 57.633 34.615 0.00 0.00 35.39 2.39
2400 2823 9.692749 CTAGAGTTTTCAACAAGTGACTACATA 57.307 33.333 0.00 0.00 35.39 2.29
2401 2824 8.421784 TCTAGAGTTTTCAACAAGTGACTACAT 58.578 33.333 0.00 0.00 35.39 2.29
2402 2825 7.778083 TCTAGAGTTTTCAACAAGTGACTACA 58.222 34.615 0.00 0.00 35.39 2.74
2403 2826 8.644318 TTCTAGAGTTTTCAACAAGTGACTAC 57.356 34.615 0.00 0.00 35.39 2.73
2404 2827 9.314321 CTTTCTAGAGTTTTCAACAAGTGACTA 57.686 33.333 0.00 0.00 35.39 2.59
2405 2828 8.041323 TCTTTCTAGAGTTTTCAACAAGTGACT 58.959 33.333 0.00 0.00 35.39 3.41
2406 2829 8.117370 GTCTTTCTAGAGTTTTCAACAAGTGAC 58.883 37.037 0.00 0.00 35.39 3.67
2407 2830 7.822334 TGTCTTTCTAGAGTTTTCAACAAGTGA 59.178 33.333 0.00 0.00 0.00 3.41
2408 2831 7.974675 TGTCTTTCTAGAGTTTTCAACAAGTG 58.025 34.615 0.00 0.00 0.00 3.16
2409 2832 8.561738 TTGTCTTTCTAGAGTTTTCAACAAGT 57.438 30.769 0.00 0.00 0.00 3.16
2422 2845 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2423 2846 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2424 2847 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2425 2848 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2426 2849 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2427 2850 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2428 2851 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2429 2852 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2430 2853 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2431 2854 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2432 2855 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2433 2856 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2434 2857 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2435 2858 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2436 2859 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2437 2860 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2438 2861 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2439 2862 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
2440 2863 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
2441 2864 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
2442 2865 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
2443 2866 4.430908 CAAATGTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
2444 2867 3.369157 GCAAATGTACTACTCCCTCCGTT 60.369 47.826 0.00 0.00 0.00 4.44
2445 2868 2.167900 GCAAATGTACTACTCCCTCCGT 59.832 50.000 0.00 0.00 0.00 4.69
2446 2869 2.431057 AGCAAATGTACTACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
2447 2870 3.707102 AGAGCAAATGTACTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
2448 2871 5.112686 CAAGAGCAAATGTACTACTCCCTC 58.887 45.833 0.00 0.00 0.00 4.30
2449 2872 4.532521 ACAAGAGCAAATGTACTACTCCCT 59.467 41.667 0.00 0.00 0.00 4.20
2450 2873 4.833390 ACAAGAGCAAATGTACTACTCCC 58.167 43.478 0.00 0.00 0.00 4.30
2451 2874 8.414778 ACTATACAAGAGCAAATGTACTACTCC 58.585 37.037 0.00 0.00 35.05 3.85
2474 2897 5.756918 AGACTTCTGGTGATAGCACTACTA 58.243 41.667 11.48 0.00 44.52 1.82
2548 2971 5.020132 ACTGGCTGAAGAGTAACTATCAGT 58.980 41.667 11.21 0.00 41.03 3.41
2561 2984 0.676151 GGGAGCAAGACTGGCTGAAG 60.676 60.000 9.73 0.00 42.78 3.02
2576 2999 1.703411 TTTTTGCTGGACAAGGGGAG 58.297 50.000 0.00 0.00 40.06 4.30
2598 3021 8.882736 TGATGTATGCGTCATATATGGAATTTC 58.117 33.333 12.78 0.00 35.86 2.17
2599 3022 8.791327 TGATGTATGCGTCATATATGGAATTT 57.209 30.769 12.78 0.00 35.86 1.82
2656 3469 4.079901 TGGTAACCAACTAACAACCAGGAA 60.080 41.667 0.00 0.00 33.28 3.36
2688 3501 5.237344 AGCTAATACGCTATGCCTTCTTTTG 59.763 40.000 0.00 0.00 38.76 2.44
2790 3615 6.490721 ACGATGAAAATTTACCTTTGGTGGTA 59.509 34.615 0.00 0.00 41.22 3.25
2792 3617 5.633182 CACGATGAAAATTTACCTTTGGTGG 59.367 40.000 0.00 0.00 36.19 4.61
2793 3618 5.633182 CCACGATGAAAATTTACCTTTGGTG 59.367 40.000 0.00 0.00 36.19 4.17
2794 3619 5.536916 TCCACGATGAAAATTTACCTTTGGT 59.463 36.000 0.00 0.00 40.16 3.67
2795 3620 6.019779 TCCACGATGAAAATTTACCTTTGG 57.980 37.500 0.00 0.00 0.00 3.28
2796 3621 7.326063 GTCTTCCACGATGAAAATTTACCTTTG 59.674 37.037 0.00 0.00 0.00 2.77
2797 3622 7.013846 TGTCTTCCACGATGAAAATTTACCTTT 59.986 33.333 0.00 0.00 0.00 3.11
2798 3623 6.488683 TGTCTTCCACGATGAAAATTTACCTT 59.511 34.615 0.00 0.00 0.00 3.50
2799 3624 6.001460 TGTCTTCCACGATGAAAATTTACCT 58.999 36.000 0.00 0.00 0.00 3.08
3004 3835 0.034767 ACCATGTCCACAGCTCCATG 60.035 55.000 0.00 0.00 35.56 3.66
3200 4031 2.356135 GGCAGAAGAATTTGCGACCTA 58.644 47.619 0.00 0.00 41.17 3.08
3219 4053 1.273327 GCCTTTTTGGTCATCAGTGGG 59.727 52.381 0.00 0.00 38.35 4.61
3266 4101 7.926018 AGAAACAACATTTTGTAACCCTCATTC 59.074 33.333 0.00 0.00 45.69 2.67
3298 4137 6.686484 AAGCCCAGAAGGAACAAAATAAAT 57.314 33.333 0.00 0.00 38.24 1.40
3299 4138 6.326323 AGAAAGCCCAGAAGGAACAAAATAAA 59.674 34.615 0.00 0.00 38.24 1.40
3300 4139 5.838521 AGAAAGCCCAGAAGGAACAAAATAA 59.161 36.000 0.00 0.00 38.24 1.40
3301 4140 5.393866 AGAAAGCCCAGAAGGAACAAAATA 58.606 37.500 0.00 0.00 38.24 1.40
3302 4141 4.226384 AGAAAGCCCAGAAGGAACAAAAT 58.774 39.130 0.00 0.00 38.24 1.82
3303 4142 3.642141 AGAAAGCCCAGAAGGAACAAAA 58.358 40.909 0.00 0.00 38.24 2.44
3304 4143 3.312736 AGAAAGCCCAGAAGGAACAAA 57.687 42.857 0.00 0.00 38.24 2.83
3305 4144 3.222603 GAAGAAAGCCCAGAAGGAACAA 58.777 45.455 0.00 0.00 38.24 2.83
3314 4153 4.077822 ACTCAGAAATGAAGAAAGCCCAG 58.922 43.478 0.00 0.00 0.00 4.45
3476 4316 7.015682 AGAGTAGAGAAATGGACAAGAAAGACA 59.984 37.037 0.00 0.00 0.00 3.41
3477 4317 7.382898 AGAGTAGAGAAATGGACAAGAAAGAC 58.617 38.462 0.00 0.00 0.00 3.01
3499 4339 6.222389 ACATCTCAAAGTCAACTTCAGAGAG 58.778 40.000 21.91 17.87 43.61 3.20
3500 4340 6.166984 ACATCTCAAAGTCAACTTCAGAGA 57.833 37.500 20.73 20.73 44.04 3.10
3501 4341 9.299963 CTATACATCTCAAAGTCAACTTCAGAG 57.700 37.037 14.42 14.42 38.39 3.35
3539 4379 5.576774 GCAATCCCAAACTAAATTACTGCAC 59.423 40.000 0.00 0.00 0.00 4.57
3764 4607 7.277098 ACACATTTTGCAGATAAATCAATGCTC 59.723 33.333 5.96 0.00 39.42 4.26
3827 4670 0.736325 ACACAGGCTCGTACGCAATC 60.736 55.000 11.24 0.00 0.00 2.67
3860 4703 1.774254 TCTGGAGAAGCAACCTTTCCA 59.226 47.619 0.00 0.00 36.64 3.53
4066 4929 5.124138 AGGCTATGAGGATATTTACGAGTCG 59.876 44.000 11.85 11.85 0.00 4.18
4117 5125 2.910688 ACTCATGTTAGCCATACCCG 57.089 50.000 0.00 0.00 30.71 5.28
4126 5134 6.820335 TCACAGGATCCATAACTCATGTTAG 58.180 40.000 15.82 0.00 41.33 2.34
4135 5143 6.114187 TGGTCATATCACAGGATCCATAAC 57.886 41.667 15.82 0.00 34.89 1.89
4137 5145 5.127682 CGATGGTCATATCACAGGATCCATA 59.872 44.000 15.82 3.07 32.57 2.74
4138 5146 4.081254 CGATGGTCATATCACAGGATCCAT 60.081 45.833 15.82 0.47 34.03 3.41
4140 5148 3.259374 ACGATGGTCATATCACAGGATCC 59.741 47.826 2.48 2.48 34.89 3.36
4141 5149 4.489810 GACGATGGTCATATCACAGGATC 58.510 47.826 2.59 0.00 42.91 3.36
4147 5155 4.081972 AGCATAGGACGATGGTCATATCAC 60.082 45.833 11.47 7.71 44.42 3.06
4161 5169 1.952296 CCTGCAATGGAAGCATAGGAC 59.048 52.381 0.00 0.00 41.82 3.85
4162 5170 1.565759 ACCTGCAATGGAAGCATAGGA 59.434 47.619 0.00 0.00 41.82 2.94
4305 5314 9.704098 GGCATTAGTTTTCTTTCTATAAGTTCG 57.296 33.333 0.00 0.00 0.00 3.95
4318 5327 5.301551 TGACAACACATGGCATTAGTTTTCT 59.698 36.000 19.92 6.41 44.10 2.52
4319 5328 5.527951 TGACAACACATGGCATTAGTTTTC 58.472 37.500 15.64 15.64 44.10 2.29
4320 5329 5.528043 TGACAACACATGGCATTAGTTTT 57.472 34.783 10.62 6.01 44.10 2.43
4439 5449 2.798847 GGCTGTAACTTTCTTCGACGTT 59.201 45.455 0.00 0.00 0.00 3.99
4521 5531 2.570581 CGCATTTTCGACGCGGTG 60.571 61.111 12.47 1.37 45.08 4.94
4535 5545 0.970427 TGGAGCACCTATCTCACGCA 60.970 55.000 0.71 0.00 37.04 5.24
4730 11921 2.024414 AGAACAACAGTTCCACAAGCC 58.976 47.619 4.86 0.00 42.01 4.35
4771 11962 2.029244 GTGCACACGACACAGTATATGC 59.971 50.000 13.17 0.00 37.96 3.14
4816 12577 2.354203 GGCAGAGGGAGTAGTCTGTTTG 60.354 54.545 0.00 0.00 41.99 2.93
4819 12580 0.324830 GGGCAGAGGGAGTAGTCTGT 60.325 60.000 0.00 0.00 41.99 3.41
4834 12595 3.196939 ACGCTTTTATATTACGGGGCA 57.803 42.857 0.00 0.00 0.00 5.36
4836 12597 6.469915 GTCAAAAACGCTTTTATATTACGGGG 59.530 38.462 0.00 0.00 32.85 5.73
4837 12598 7.007636 GTGTCAAAAACGCTTTTATATTACGGG 59.992 37.037 0.00 0.00 32.85 5.28
4838 12599 7.747357 AGTGTCAAAAACGCTTTTATATTACGG 59.253 33.333 0.00 0.00 46.62 4.02
4839 12600 8.649810 AGTGTCAAAAACGCTTTTATATTACG 57.350 30.769 0.00 0.00 46.62 3.18
4903 12664 5.496556 TGCTAGCACTGCCTAAATTTCTTA 58.503 37.500 14.93 0.00 0.00 2.10
4906 12667 4.261363 GGATGCTAGCACTGCCTAAATTTC 60.261 45.833 22.07 8.78 0.00 2.17
4964 12725 0.739813 GTGATGGGTACGACTGTGGC 60.740 60.000 0.00 0.00 0.00 5.01
4970 12731 3.131577 TGTTCTATGGTGATGGGTACGAC 59.868 47.826 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.