Multiple sequence alignment - TraesCS5D01G331000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G331000 chr5D 100.000 3709 0 0 1 3709 422006315 422010023 0.000000e+00 6850
1 TraesCS5D01G331000 chr5B 89.465 1927 106 27 1336 3196 508777472 508779367 0.000000e+00 2344
2 TraesCS5D01G331000 chr5B 89.551 1292 93 17 1 1275 508776187 508777453 0.000000e+00 1600
3 TraesCS5D01G331000 chr5B 90.968 310 24 4 1336 1642 548796359 548796051 7.410000e-112 414
4 TraesCS5D01G331000 chr5B 90.254 236 11 8 1053 1276 548796621 548796386 7.790000e-77 298
5 TraesCS5D01G331000 chr5B 92.073 164 10 2 1711 1874 548796056 548795896 1.040000e-55 228
6 TraesCS5D01G331000 chr5A 86.990 1545 132 28 466 1985 535565399 535566899 0.000000e+00 1676
7 TraesCS5D01G331000 chr5A 89.451 1365 70 25 2157 3471 535567158 535568498 0.000000e+00 1655
8 TraesCS5D01G331000 chr5A 92.500 360 14 5 103 458 535564560 535564910 1.540000e-138 503
9 TraesCS5D01G331000 chr6B 85.596 604 55 23 1053 1642 532709474 532708889 4.100000e-169 604
10 TraesCS5D01G331000 chr6B 83.768 499 47 22 1053 1536 711836646 711837125 3.400000e-120 442
11 TraesCS5D01G331000 chr6B 81.658 567 66 19 2182 2726 46921270 46920720 1.580000e-118 436
12 TraesCS5D01G331000 chr6B 91.558 308 24 2 1336 1641 720341634 720341327 1.230000e-114 424
13 TraesCS5D01G331000 chr6B 91.463 164 10 1 1711 1874 532708894 532708735 4.820000e-54 222
14 TraesCS5D01G331000 chr4A 85.570 596 54 23 1061 1642 713842019 713841442 2.470000e-166 595
15 TraesCS5D01G331000 chr6A 85.265 604 57 23 1053 1642 573618194 573617609 8.870000e-166 593
16 TraesCS5D01G331000 chr6A 84.411 603 63 20 1053 1642 157000932 157001516 6.950000e-157 564
17 TraesCS5D01G331000 chr6A 91.463 164 9 2 1711 1874 573617614 573617456 1.730000e-53 220
18 TraesCS5D01G331000 chr4B 85.099 604 58 23 1053 1642 668389402 668389987 4.130000e-164 588
19 TraesCS5D01G331000 chr4B 84.167 600 61 18 1058 1642 603736986 603737566 5.410000e-153 551
20 TraesCS5D01G331000 chr4B 90.419 167 12 1 1708 1874 603737558 603737720 2.240000e-52 217
21 TraesCS5D01G331000 chr4B 90.419 167 12 1 1708 1874 668389979 668390141 2.240000e-52 217
22 TraesCS5D01G331000 chr7B 84.411 603 61 24 1053 1640 312503105 312503689 2.500000e-156 562
23 TraesCS5D01G331000 chr3B 83.567 499 48 22 1053 1536 795400093 795400572 1.580000e-118 436
24 TraesCS5D01G331000 chr3B 90.291 309 28 2 1336 1642 41468744 41468436 1.600000e-108 403
25 TraesCS5D01G331000 chr3B 91.463 164 10 1 1711 1874 41468441 41468282 4.820000e-54 222
26 TraesCS5D01G331000 chr1A 81.095 603 53 30 1053 1640 76840363 76839807 3.420000e-115 425
27 TraesCS5D01G331000 chr1A 92.453 159 7 2 1716 1874 76839805 76839652 4.820000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G331000 chr5D 422006315 422010023 3708 False 6850.000000 6850 100.000000 1 3709 1 chr5D.!!$F1 3708
1 TraesCS5D01G331000 chr5B 508776187 508779367 3180 False 1972.000000 2344 89.508000 1 3196 2 chr5B.!!$F1 3195
2 TraesCS5D01G331000 chr5B 548795896 548796621 725 True 313.333333 414 91.098333 1053 1874 3 chr5B.!!$R1 821
3 TraesCS5D01G331000 chr5A 535564560 535568498 3938 False 1278.000000 1676 89.647000 103 3471 3 chr5A.!!$F1 3368
4 TraesCS5D01G331000 chr6B 46920720 46921270 550 True 436.000000 436 81.658000 2182 2726 1 chr6B.!!$R1 544
5 TraesCS5D01G331000 chr6B 532708735 532709474 739 True 413.000000 604 88.529500 1053 1874 2 chr6B.!!$R3 821
6 TraesCS5D01G331000 chr4A 713841442 713842019 577 True 595.000000 595 85.570000 1061 1642 1 chr4A.!!$R1 581
7 TraesCS5D01G331000 chr6A 157000932 157001516 584 False 564.000000 564 84.411000 1053 1642 1 chr6A.!!$F1 589
8 TraesCS5D01G331000 chr6A 573617456 573618194 738 True 406.500000 593 88.364000 1053 1874 2 chr6A.!!$R1 821
9 TraesCS5D01G331000 chr4B 668389402 668390141 739 False 402.500000 588 87.759000 1053 1874 2 chr4B.!!$F2 821
10 TraesCS5D01G331000 chr4B 603736986 603737720 734 False 384.000000 551 87.293000 1058 1874 2 chr4B.!!$F1 816
11 TraesCS5D01G331000 chr7B 312503105 312503689 584 False 562.000000 562 84.411000 1053 1640 1 chr7B.!!$F1 587
12 TraesCS5D01G331000 chr1A 76839652 76840363 711 True 323.500000 425 86.774000 1053 1874 2 chr1A.!!$R1 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 1160 0.102663 GGCGGAGGTAGAAGCAGTAC 59.897 60.0 0.0 0.0 0.0 2.73 F
829 1326 0.108138 AATCCTTCTGCTCCGGTTCG 60.108 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 2180 0.733223 GTCTCAGTCGGCCGAGAAAC 60.733 60.0 31.97 16.88 39.88 2.78 R
2788 3581 1.299541 CCTCGACAATGCCATACCAC 58.700 55.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.740585 TGGTTATTTCGCGGGTCAATG 59.259 47.619 6.13 0.00 0.00 2.82
51 56 2.012902 GCGTACCGGTGCATAGGACT 62.013 60.000 23.00 0.00 0.00 3.85
201 206 2.511600 CGGCAGATGTCCCCGAAC 60.512 66.667 4.30 0.00 44.55 3.95
374 379 2.523015 CAAGTTTTCATCCATCAGCGC 58.477 47.619 0.00 0.00 0.00 5.92
381 386 3.774959 ATCCATCAGCGCGTCGTCC 62.775 63.158 8.43 0.00 0.00 4.79
395 400 2.030457 CGTCGTCCATCAGGCATAAAAC 59.970 50.000 0.00 0.00 33.74 2.43
396 401 3.270877 GTCGTCCATCAGGCATAAAACT 58.729 45.455 0.00 0.00 33.74 2.66
397 402 3.309954 GTCGTCCATCAGGCATAAAACTC 59.690 47.826 0.00 0.00 33.74 3.01
398 403 2.285220 CGTCCATCAGGCATAAAACTCG 59.715 50.000 0.00 0.00 33.74 4.18
399 404 3.270877 GTCCATCAGGCATAAAACTCGT 58.729 45.455 0.00 0.00 33.74 4.18
400 405 3.309954 GTCCATCAGGCATAAAACTCGTC 59.690 47.826 0.00 0.00 33.74 4.20
458 468 6.047231 TCGATCAGTACGTAGAGATCAAGAA 58.953 40.000 25.11 12.37 37.36 2.52
459 469 6.706716 TCGATCAGTACGTAGAGATCAAGAAT 59.293 38.462 25.11 2.46 37.36 2.40
460 470 7.871463 TCGATCAGTACGTAGAGATCAAGAATA 59.129 37.037 25.11 9.58 37.36 1.75
461 471 8.166066 CGATCAGTACGTAGAGATCAAGAATAG 58.834 40.741 25.11 11.63 37.36 1.73
462 472 7.192148 TCAGTACGTAGAGATCAAGAATAGC 57.808 40.000 0.00 0.00 0.00 2.97
463 473 6.205076 TCAGTACGTAGAGATCAAGAATAGCC 59.795 42.308 0.00 0.00 0.00 3.93
464 474 4.857509 ACGTAGAGATCAAGAATAGCCC 57.142 45.455 0.00 0.00 0.00 5.19
473 964 2.019984 CAAGAATAGCCCACCTTGAGC 58.980 52.381 0.00 0.00 38.52 4.26
600 1091 1.377333 CCCTCTTTCTTCCACCGGC 60.377 63.158 0.00 0.00 0.00 6.13
602 1093 1.741770 CTCTTTCTTCCACCGGCCG 60.742 63.158 21.04 21.04 0.00 6.13
669 1160 0.102663 GGCGGAGGTAGAAGCAGTAC 59.897 60.000 0.00 0.00 0.00 2.73
700 1191 0.394352 AGGGAAGCAGCGGTTATTGG 60.394 55.000 0.00 0.00 0.00 3.16
716 1207 5.105351 GGTTATTGGTGCAGCTAAAGGATTT 60.105 40.000 18.08 0.00 43.42 2.17
736 1227 1.904440 AGGGAGAGGAGCCATGATTT 58.096 50.000 0.00 0.00 0.00 2.17
737 1228 1.773653 AGGGAGAGGAGCCATGATTTC 59.226 52.381 0.00 0.00 0.00 2.17
738 1229 1.202867 GGGAGAGGAGCCATGATTTCC 60.203 57.143 0.00 0.00 0.00 3.13
739 1230 1.492176 GGAGAGGAGCCATGATTTCCA 59.508 52.381 11.18 0.00 33.32 3.53
741 1232 3.410508 GAGAGGAGCCATGATTTCCATC 58.589 50.000 11.18 6.35 31.94 3.51
743 1234 1.492176 AGGAGCCATGATTTCCATCGT 59.508 47.619 11.18 0.00 31.94 3.73
761 1257 0.656259 GTGGACGACGATCGATCTGA 59.344 55.000 24.34 4.83 43.74 3.27
762 1258 1.264557 GTGGACGACGATCGATCTGAT 59.735 52.381 24.34 8.48 43.74 2.90
764 1260 3.059120 GTGGACGACGATCGATCTGATTA 60.059 47.826 24.34 1.32 43.74 1.75
765 1261 3.059120 TGGACGACGATCGATCTGATTAC 60.059 47.826 24.34 9.79 43.74 1.89
766 1262 3.146994 GACGACGATCGATCTGATTACG 58.853 50.000 24.34 18.05 43.74 3.18
767 1263 1.899339 CGACGATCGATCTGATTACGC 59.101 52.381 24.34 4.74 43.74 4.42
768 1264 2.243407 GACGATCGATCTGATTACGCC 58.757 52.381 24.34 0.00 37.47 5.68
769 1265 1.607148 ACGATCGATCTGATTACGCCA 59.393 47.619 24.34 0.00 37.47 5.69
788 1285 1.393539 CATCGTGGTTTCCATCGTGAC 59.606 52.381 9.24 0.00 35.28 3.67
789 1286 0.389757 TCGTGGTTTCCATCGTGACA 59.610 50.000 9.24 0.00 35.28 3.58
790 1287 1.202545 TCGTGGTTTCCATCGTGACAA 60.203 47.619 9.24 0.00 35.28 3.18
791 1288 1.194547 CGTGGTTTCCATCGTGACAAG 59.805 52.381 0.00 0.00 35.28 3.16
792 1289 2.218603 GTGGTTTCCATCGTGACAAGT 58.781 47.619 0.00 0.00 35.28 3.16
793 1290 2.616842 GTGGTTTCCATCGTGACAAGTT 59.383 45.455 0.00 0.00 35.28 2.66
794 1291 3.066203 GTGGTTTCCATCGTGACAAGTTT 59.934 43.478 0.00 0.00 35.28 2.66
795 1292 3.697045 TGGTTTCCATCGTGACAAGTTTT 59.303 39.130 0.00 0.00 0.00 2.43
796 1293 4.041723 GGTTTCCATCGTGACAAGTTTTG 58.958 43.478 0.00 0.00 0.00 2.44
797 1294 3.347958 TTCCATCGTGACAAGTTTTGC 57.652 42.857 0.00 0.00 0.00 3.68
798 1295 1.262950 TCCATCGTGACAAGTTTTGCG 59.737 47.619 0.00 0.00 0.00 4.85
799 1296 1.002900 CCATCGTGACAAGTTTTGCGT 60.003 47.619 0.00 0.00 0.00 5.24
800 1297 2.540769 CCATCGTGACAAGTTTTGCGTT 60.541 45.455 0.00 0.00 0.00 4.84
801 1298 2.445453 TCGTGACAAGTTTTGCGTTC 57.555 45.000 0.00 0.00 0.00 3.95
802 1299 1.101454 CGTGACAAGTTTTGCGTTCG 58.899 50.000 0.00 0.00 0.00 3.95
803 1300 1.267136 CGTGACAAGTTTTGCGTTCGA 60.267 47.619 0.00 0.00 0.00 3.71
808 1305 2.160813 ACAAGTTTTGCGTTCGAGTTGT 59.839 40.909 0.00 0.00 32.43 3.32
817 1314 2.159827 GCGTTCGAGTTGTGAATCCTTC 60.160 50.000 0.00 0.00 0.00 3.46
829 1326 0.108138 AATCCTTCTGCTCCGGTTCG 60.108 55.000 0.00 0.00 0.00 3.95
906 1404 3.550842 GCTTATTTGGGCCATGATTCGAC 60.551 47.826 7.26 0.00 0.00 4.20
907 1405 1.402787 ATTTGGGCCATGATTCGACC 58.597 50.000 7.26 0.00 0.00 4.79
945 1443 0.896019 CTCAGAGGGACCTGTGTCGT 60.896 60.000 14.31 0.00 42.73 4.34
954 1455 0.966920 ACCTGTGTCGTGAACCCTAG 59.033 55.000 0.00 0.00 0.00 3.02
955 1456 1.254026 CCTGTGTCGTGAACCCTAGA 58.746 55.000 0.00 0.00 0.00 2.43
967 1468 5.620654 CGTGAACCCTAGAAAACGATCTGTA 60.621 44.000 0.00 0.00 33.03 2.74
1117 1618 2.896443 CGCCAGTCCCTTCCTCTC 59.104 66.667 0.00 0.00 0.00 3.20
1232 1733 1.001248 AGTGCGAGGTAAGCCCCTA 59.999 57.895 0.00 0.00 34.03 3.53
1329 1858 2.431057 AGGAGACGCCGATTGTTTAGAT 59.569 45.455 0.00 0.00 43.43 1.98
1332 1861 4.494199 GGAGACGCCGATTGTTTAGATTTG 60.494 45.833 0.00 0.00 0.00 2.32
1333 1862 4.000988 AGACGCCGATTGTTTAGATTTGT 58.999 39.130 0.00 0.00 0.00 2.83
1334 1863 5.172934 AGACGCCGATTGTTTAGATTTGTA 58.827 37.500 0.00 0.00 0.00 2.41
1406 1947 1.074775 ACCGGAAGCATTTGCCTCA 59.925 52.632 9.46 0.00 43.38 3.86
1484 2026 0.519175 GCAGCTGCGTACATCAAACG 60.519 55.000 25.23 0.00 43.12 3.60
1490 2037 0.452122 GCGTACATCAAACGGTGCAC 60.452 55.000 8.80 8.80 40.64 4.57
1520 2067 3.071167 CCTGGCTAGTACCCAAGATTACC 59.929 52.174 0.00 0.00 30.66 2.85
1563 2110 0.250081 TGGCATATATTCCGCGTGCA 60.250 50.000 15.97 1.84 37.53 4.57
1579 2126 2.096466 CGTGCATGTTTTACTTCTGCGA 60.096 45.455 0.00 0.00 35.63 5.10
1581 2128 4.475944 GTGCATGTTTTACTTCTGCGATT 58.524 39.130 0.00 0.00 35.63 3.34
1633 2180 4.338879 AGATGTTCTTGGGTCTCAATTGG 58.661 43.478 5.42 0.00 34.45 3.16
1655 2263 4.649845 TCGGCCGACTGAGACATA 57.350 55.556 27.28 0.00 0.00 2.29
1707 2315 4.855715 TGTTGTTGTTGTTGTTCTTCCA 57.144 36.364 0.00 0.00 0.00 3.53
1723 2331 0.895530 TCCATGTCTGGGAAGACGAC 59.104 55.000 0.00 0.00 43.34 4.34
1736 2344 4.091075 GGGAAGACGACGAATGTTTACTTC 59.909 45.833 0.00 0.00 33.77 3.01
1760 2368 4.704833 TGGCCGAGCTGACTTGCC 62.705 66.667 0.00 0.00 41.89 4.52
1766 2374 0.247736 CGAGCTGACTTGCCCTAGTT 59.752 55.000 0.00 0.00 0.00 2.24
1903 2517 4.685169 ATGAAGTGCACCTTTTGTATCG 57.315 40.909 14.63 0.00 32.03 2.92
1906 2520 3.896648 AGTGCACCTTTTGTATCGTTG 57.103 42.857 14.63 0.00 0.00 4.10
2010 2737 4.222366 TGCCAAGATTAAATTGCATGTGGA 59.778 37.500 0.00 0.00 0.00 4.02
2077 2804 4.640201 CACCTTTCAGTTTTCACCTTGAGA 59.360 41.667 0.00 0.00 0.00 3.27
2078 2805 4.884164 ACCTTTCAGTTTTCACCTTGAGAG 59.116 41.667 0.00 0.00 0.00 3.20
2079 2806 4.884164 CCTTTCAGTTTTCACCTTGAGAGT 59.116 41.667 0.00 0.00 0.00 3.24
2127 2878 2.009774 GAGCAAATCTACCGTGCATGT 58.990 47.619 4.96 0.87 40.83 3.21
2145 2896 6.370442 GTGCATGTTGGTTAGTAGTATGACAA 59.630 38.462 0.00 0.00 0.00 3.18
2146 2897 6.593770 TGCATGTTGGTTAGTAGTATGACAAG 59.406 38.462 0.00 0.00 0.00 3.16
2203 2954 5.880901 ACTTTGCTTCCTAAAGATCTCCAA 58.119 37.500 0.00 0.00 38.26 3.53
2231 2990 1.444212 CCCATTTGGCTTGCGTTCG 60.444 57.895 0.00 0.00 0.00 3.95
2259 3018 9.669353 CATTCCTAATTGCATGATGTACTTAAC 57.331 33.333 0.00 0.00 0.00 2.01
2306 3065 3.574284 TTCCTGCAAATGGAATGAACG 57.426 42.857 1.89 0.00 38.53 3.95
2441 3205 8.160106 ACCAACTATCAAGAAAGAGAAGAATGT 58.840 33.333 0.00 0.00 0.00 2.71
2522 3288 4.447054 TCAAAGCAAAAATGTAATGCACCG 59.553 37.500 0.00 0.00 42.45 4.94
2654 3447 1.339929 GGTGGCACAAACTACAAAGGG 59.660 52.381 20.82 0.00 44.16 3.95
2704 3497 0.680921 GGCAATAGCAACTCAGGGCA 60.681 55.000 0.00 0.00 44.61 5.36
2746 3539 1.683707 TGGTCAGCGCTCAGGAGAT 60.684 57.895 7.13 0.00 0.00 2.75
2747 3540 1.260538 TGGTCAGCGCTCAGGAGATT 61.261 55.000 7.13 0.00 0.00 2.40
2808 3603 0.908910 TGGTATGGCATTGTCGAGGT 59.091 50.000 4.78 0.00 0.00 3.85
2821 3616 2.960384 TGTCGAGGTTTGTGTTCTCCTA 59.040 45.455 0.00 0.00 0.00 2.94
2832 3627 8.364894 GGTTTGTGTTCTCCTATTATTTGGTTT 58.635 33.333 0.00 0.00 0.00 3.27
2875 3670 4.023536 TCCGTGGCAAGAAAAATAGTGAAC 60.024 41.667 0.76 0.00 0.00 3.18
2876 3671 4.261405 CCGTGGCAAGAAAAATAGTGAACA 60.261 41.667 0.76 0.00 0.00 3.18
2878 3673 4.681483 GTGGCAAGAAAAATAGTGAACAGC 59.319 41.667 0.00 0.00 0.00 4.40
2879 3674 4.584325 TGGCAAGAAAAATAGTGAACAGCT 59.416 37.500 0.00 0.00 0.00 4.24
2882 3677 6.803807 GGCAAGAAAAATAGTGAACAGCTAAG 59.196 38.462 0.00 0.00 0.00 2.18
2884 3679 7.324616 GCAAGAAAAATAGTGAACAGCTAAGTG 59.675 37.037 0.00 0.00 0.00 3.16
2893 3695 5.988561 AGTGAACAGCTAAGTGAAAGAAGAG 59.011 40.000 0.00 0.00 0.00 2.85
2939 3741 3.988976 TGGCTAGCATTCTGAAGTCTT 57.011 42.857 18.24 0.00 0.00 3.01
3021 3826 1.546923 TGTGATTTTGATGCTGGGCAG 59.453 47.619 0.00 0.00 43.65 4.85
3044 3849 1.689959 CGACACAAGATGCAAAAGGC 58.310 50.000 0.00 0.00 45.13 4.35
3059 3864 2.919666 AAGGCGTACATCAAATGCAC 57.080 45.000 0.00 0.00 0.00 4.57
3142 3947 3.377172 GGTGCTGTAAATAAATCACGCCT 59.623 43.478 0.00 0.00 0.00 5.52
3153 3958 1.186200 ATCACGCCTAGCTGAAGTCA 58.814 50.000 0.00 0.00 0.00 3.41
3242 4047 5.519927 CCAAAGACAACATTCTGAAACAACC 59.480 40.000 0.00 0.00 0.00 3.77
3277 4082 5.582689 GCCACTGGCTAGTCATTTTAAAT 57.417 39.130 13.28 0.00 46.69 1.40
3282 4087 7.141363 CACTGGCTAGTCATTTTAAATATGGC 58.859 38.462 0.00 6.78 34.07 4.40
3283 4088 6.833416 ACTGGCTAGTCATTTTAAATATGGCA 59.167 34.615 0.00 0.00 28.79 4.92
3326 4131 9.262472 CTTATTTTTACATCGTTTAGTGTGAGC 57.738 33.333 0.00 0.00 0.00 4.26
3328 4133 1.710013 ACATCGTTTAGTGTGAGCCG 58.290 50.000 0.00 0.00 0.00 5.52
3339 4144 3.097614 AGTGTGAGCCGGAATTAGTAGT 58.902 45.455 5.05 0.00 0.00 2.73
3340 4145 3.514309 AGTGTGAGCCGGAATTAGTAGTT 59.486 43.478 5.05 0.00 0.00 2.24
3341 4146 4.020485 AGTGTGAGCCGGAATTAGTAGTTT 60.020 41.667 5.05 0.00 0.00 2.66
3342 4147 5.186409 AGTGTGAGCCGGAATTAGTAGTTTA 59.814 40.000 5.05 0.00 0.00 2.01
3343 4148 5.290400 GTGTGAGCCGGAATTAGTAGTTTAC 59.710 44.000 5.05 0.00 0.00 2.01
3344 4149 4.501921 GTGAGCCGGAATTAGTAGTTTACG 59.498 45.833 5.05 0.00 0.00 3.18
3345 4150 4.158394 TGAGCCGGAATTAGTAGTTTACGT 59.842 41.667 5.05 0.00 0.00 3.57
3346 4151 5.356751 TGAGCCGGAATTAGTAGTTTACGTA 59.643 40.000 5.05 0.00 0.00 3.57
3376 4194 2.158682 TGTTGGCTCTAACCTGAAAGCA 60.159 45.455 0.00 0.00 36.47 3.91
3379 4197 4.778213 TGGCTCTAACCTGAAAGCATAT 57.222 40.909 0.00 0.00 36.47 1.78
3387 4205 2.310538 CCTGAAAGCATATTGGGGGTC 58.689 52.381 0.00 0.00 0.00 4.46
3388 4206 2.091665 CCTGAAAGCATATTGGGGGTCT 60.092 50.000 0.00 0.00 0.00 3.85
3392 4210 3.756082 AAGCATATTGGGGGTCTTCAA 57.244 42.857 0.00 0.00 0.00 2.69
3393 4211 3.303351 AGCATATTGGGGGTCTTCAAG 57.697 47.619 0.00 0.00 0.00 3.02
3394 4212 2.852449 AGCATATTGGGGGTCTTCAAGA 59.148 45.455 0.00 0.00 0.00 3.02
3395 4213 3.464833 AGCATATTGGGGGTCTTCAAGAT 59.535 43.478 0.00 0.00 0.00 2.40
3396 4214 4.665009 AGCATATTGGGGGTCTTCAAGATA 59.335 41.667 0.00 0.00 0.00 1.98
3397 4215 5.314306 AGCATATTGGGGGTCTTCAAGATAT 59.686 40.000 0.00 0.00 0.00 1.63
3398 4216 5.416952 GCATATTGGGGGTCTTCAAGATATG 59.583 44.000 0.00 0.00 0.00 1.78
3399 4217 6.546484 CATATTGGGGGTCTTCAAGATATGT 58.454 40.000 0.00 0.00 0.00 2.29
3400 4218 4.503714 TTGGGGGTCTTCAAGATATGTC 57.496 45.455 0.00 0.00 0.00 3.06
3401 4219 2.777692 TGGGGGTCTTCAAGATATGTCC 59.222 50.000 0.00 0.00 0.00 4.02
3402 4220 2.777692 GGGGGTCTTCAAGATATGTCCA 59.222 50.000 0.00 0.00 0.00 4.02
3403 4221 3.181450 GGGGGTCTTCAAGATATGTCCAG 60.181 52.174 0.00 0.00 0.00 3.86
3404 4222 3.471680 GGGTCTTCAAGATATGTCCAGC 58.528 50.000 0.00 0.00 0.00 4.85
3405 4223 3.471680 GGTCTTCAAGATATGTCCAGCC 58.528 50.000 0.00 0.00 0.00 4.85
3416 4234 2.435372 TGTCCAGCCCCACAAATATC 57.565 50.000 0.00 0.00 0.00 1.63
3417 4235 1.638070 TGTCCAGCCCCACAAATATCA 59.362 47.619 0.00 0.00 0.00 2.15
3422 4240 3.768757 CCAGCCCCACAAATATCAAGAAA 59.231 43.478 0.00 0.00 0.00 2.52
3425 4243 5.639082 CAGCCCCACAAATATCAAGAAAAAC 59.361 40.000 0.00 0.00 0.00 2.43
3441 4259 5.370679 AGAAAAACATGCTTCCAATTGCTT 58.629 33.333 0.00 0.00 0.00 3.91
3445 4263 2.027561 ACATGCTTCCAATTGCTTGCAT 60.028 40.909 18.14 18.14 41.08 3.96
3471 4289 2.508526 CAAGAACAGGGTAGCTTGCTT 58.491 47.619 3.66 0.00 32.41 3.91
3472 4290 3.674997 CAAGAACAGGGTAGCTTGCTTA 58.325 45.455 3.66 0.00 32.41 3.09
3473 4291 3.618690 AGAACAGGGTAGCTTGCTTAG 57.381 47.619 3.66 0.00 0.00 2.18
3474 4292 3.173965 AGAACAGGGTAGCTTGCTTAGA 58.826 45.455 3.66 0.00 0.00 2.10
3475 4293 3.777522 AGAACAGGGTAGCTTGCTTAGAT 59.222 43.478 3.66 0.00 0.00 1.98
3476 4294 3.550437 ACAGGGTAGCTTGCTTAGATG 57.450 47.619 3.66 0.00 0.00 2.90
3477 4295 2.216898 CAGGGTAGCTTGCTTAGATGC 58.783 52.381 0.00 0.00 0.00 3.91
3478 4296 2.122768 AGGGTAGCTTGCTTAGATGCT 58.877 47.619 0.00 0.00 39.30 3.79
3479 4297 3.070159 CAGGGTAGCTTGCTTAGATGCTA 59.930 47.826 0.00 0.00 37.02 3.49
3480 4298 3.906846 AGGGTAGCTTGCTTAGATGCTAT 59.093 43.478 0.00 0.00 39.69 2.97
3481 4299 3.999663 GGGTAGCTTGCTTAGATGCTATG 59.000 47.826 0.00 0.00 39.69 2.23
3482 4300 4.262635 GGGTAGCTTGCTTAGATGCTATGA 60.263 45.833 0.00 0.00 39.69 2.15
3483 4301 5.300752 GGTAGCTTGCTTAGATGCTATGAA 58.699 41.667 0.00 0.00 39.69 2.57
3484 4302 5.407995 GGTAGCTTGCTTAGATGCTATGAAG 59.592 44.000 0.00 0.00 39.69 3.02
3485 4303 5.287674 AGCTTGCTTAGATGCTATGAAGA 57.712 39.130 0.00 0.00 33.64 2.87
3486 4304 5.867330 AGCTTGCTTAGATGCTATGAAGAT 58.133 37.500 0.00 0.00 33.64 2.40
3487 4305 7.002250 AGCTTGCTTAGATGCTATGAAGATA 57.998 36.000 0.00 0.00 33.64 1.98
3488 4306 7.622713 AGCTTGCTTAGATGCTATGAAGATAT 58.377 34.615 0.00 0.00 33.64 1.63
3489 4307 8.102047 AGCTTGCTTAGATGCTATGAAGATATT 58.898 33.333 0.00 0.00 33.64 1.28
3490 4308 8.728833 GCTTGCTTAGATGCTATGAAGATATTT 58.271 33.333 0.00 0.00 0.00 1.40
3531 4349 7.510549 CAGAATTTCTGGTTCCTAAAGTTCA 57.489 36.000 17.09 0.00 40.71 3.18
3532 4350 8.115490 CAGAATTTCTGGTTCCTAAAGTTCAT 57.885 34.615 17.09 0.00 40.71 2.57
3533 4351 8.025445 CAGAATTTCTGGTTCCTAAAGTTCATG 58.975 37.037 17.09 0.00 40.71 3.07
3534 4352 7.725844 AGAATTTCTGGTTCCTAAAGTTCATGT 59.274 33.333 0.00 0.00 0.00 3.21
3535 4353 6.633500 TTTCTGGTTCCTAAAGTTCATGTG 57.367 37.500 0.00 0.00 0.00 3.21
3536 4354 4.072131 TCTGGTTCCTAAAGTTCATGTGC 58.928 43.478 0.00 0.00 0.00 4.57
3537 4355 3.153919 TGGTTCCTAAAGTTCATGTGCC 58.846 45.455 0.00 0.00 0.00 5.01
3538 4356 3.153919 GGTTCCTAAAGTTCATGTGCCA 58.846 45.455 0.00 0.00 0.00 4.92
3539 4357 3.191371 GGTTCCTAAAGTTCATGTGCCAG 59.809 47.826 0.00 0.00 0.00 4.85
3540 4358 3.788227 TCCTAAAGTTCATGTGCCAGT 57.212 42.857 0.00 0.00 0.00 4.00
3541 4359 3.674997 TCCTAAAGTTCATGTGCCAGTC 58.325 45.455 0.00 0.00 0.00 3.51
3542 4360 3.072330 TCCTAAAGTTCATGTGCCAGTCA 59.928 43.478 0.00 0.00 0.00 3.41
3543 4361 4.012374 CCTAAAGTTCATGTGCCAGTCAT 58.988 43.478 0.00 0.00 0.00 3.06
3544 4362 5.045942 TCCTAAAGTTCATGTGCCAGTCATA 60.046 40.000 0.00 0.00 0.00 2.15
3545 4363 5.295292 CCTAAAGTTCATGTGCCAGTCATAG 59.705 44.000 0.00 0.00 0.00 2.23
3546 4364 4.558226 AAGTTCATGTGCCAGTCATAGA 57.442 40.909 0.00 0.00 0.00 1.98
3547 4365 4.558226 AGTTCATGTGCCAGTCATAGAA 57.442 40.909 0.00 0.00 0.00 2.10
3548 4366 4.256920 AGTTCATGTGCCAGTCATAGAAC 58.743 43.478 0.00 0.00 35.80 3.01
3549 4367 3.979101 TCATGTGCCAGTCATAGAACA 57.021 42.857 0.00 0.00 0.00 3.18
3550 4368 3.599343 TCATGTGCCAGTCATAGAACAC 58.401 45.455 0.00 0.00 0.00 3.32
3551 4369 3.007831 TCATGTGCCAGTCATAGAACACA 59.992 43.478 0.00 0.00 41.73 3.72
3552 4370 2.766313 TGTGCCAGTCATAGAACACAC 58.234 47.619 0.00 0.00 33.41 3.82
3553 4371 2.368548 TGTGCCAGTCATAGAACACACT 59.631 45.455 0.00 0.00 33.41 3.55
3554 4372 2.738846 GTGCCAGTCATAGAACACACTG 59.261 50.000 0.00 0.00 36.75 3.66
3555 4373 2.632512 TGCCAGTCATAGAACACACTGA 59.367 45.455 0.00 0.00 38.90 3.41
3556 4374 3.261643 TGCCAGTCATAGAACACACTGAT 59.738 43.478 0.00 0.00 38.90 2.90
3557 4375 3.868077 GCCAGTCATAGAACACACTGATC 59.132 47.826 0.00 0.00 38.90 2.92
3558 4376 4.108336 CCAGTCATAGAACACACTGATCG 58.892 47.826 0.00 0.00 38.90 3.69
3559 4377 4.142381 CCAGTCATAGAACACACTGATCGA 60.142 45.833 0.00 0.00 38.90 3.59
3560 4378 4.795795 CAGTCATAGAACACACTGATCGAC 59.204 45.833 0.00 0.00 38.90 4.20
3561 4379 4.106197 GTCATAGAACACACTGATCGACC 58.894 47.826 0.00 0.00 0.00 4.79
3562 4380 3.130516 TCATAGAACACACTGATCGACCC 59.869 47.826 0.00 0.00 0.00 4.46
3563 4381 1.633774 AGAACACACTGATCGACCCT 58.366 50.000 0.00 0.00 0.00 4.34
3564 4382 1.273606 AGAACACACTGATCGACCCTG 59.726 52.381 0.00 0.00 0.00 4.45
3565 4383 1.272490 GAACACACTGATCGACCCTGA 59.728 52.381 0.00 0.00 0.00 3.86
3566 4384 1.561643 ACACACTGATCGACCCTGAT 58.438 50.000 0.00 0.00 0.00 2.90
3567 4385 1.902508 ACACACTGATCGACCCTGATT 59.097 47.619 0.00 0.00 0.00 2.57
3568 4386 2.093973 ACACACTGATCGACCCTGATTC 60.094 50.000 0.00 0.00 0.00 2.52
3569 4387 2.094026 CACACTGATCGACCCTGATTCA 60.094 50.000 0.00 0.00 0.00 2.57
3570 4388 2.567169 ACACTGATCGACCCTGATTCAA 59.433 45.455 0.00 0.00 0.00 2.69
3571 4389 3.198635 ACACTGATCGACCCTGATTCAAT 59.801 43.478 0.00 0.00 0.00 2.57
3572 4390 3.558829 CACTGATCGACCCTGATTCAATG 59.441 47.826 0.00 0.00 0.00 2.82
3573 4391 3.452264 ACTGATCGACCCTGATTCAATGA 59.548 43.478 0.00 0.00 0.00 2.57
3574 4392 4.080919 ACTGATCGACCCTGATTCAATGAA 60.081 41.667 0.00 0.00 0.00 2.57
3575 4393 4.445453 TGATCGACCCTGATTCAATGAAG 58.555 43.478 1.10 0.00 0.00 3.02
3576 4394 4.162131 TGATCGACCCTGATTCAATGAAGA 59.838 41.667 1.10 0.00 0.00 2.87
3577 4395 3.861840 TCGACCCTGATTCAATGAAGAC 58.138 45.455 1.10 0.00 0.00 3.01
3578 4396 3.515502 TCGACCCTGATTCAATGAAGACT 59.484 43.478 1.10 0.00 0.00 3.24
3579 4397 4.709886 TCGACCCTGATTCAATGAAGACTA 59.290 41.667 1.10 0.00 0.00 2.59
3580 4398 5.186992 TCGACCCTGATTCAATGAAGACTAA 59.813 40.000 1.10 0.00 0.00 2.24
3581 4399 5.521735 CGACCCTGATTCAATGAAGACTAAG 59.478 44.000 1.10 0.00 0.00 2.18
3582 4400 5.749462 ACCCTGATTCAATGAAGACTAAGG 58.251 41.667 1.10 3.97 0.00 2.69
3583 4401 5.251700 ACCCTGATTCAATGAAGACTAAGGT 59.748 40.000 1.10 1.12 0.00 3.50
3584 4402 6.443849 ACCCTGATTCAATGAAGACTAAGGTA 59.556 38.462 1.10 0.00 0.00 3.08
3585 4403 7.037586 ACCCTGATTCAATGAAGACTAAGGTAA 60.038 37.037 1.10 0.00 0.00 2.85
3586 4404 7.497249 CCCTGATTCAATGAAGACTAAGGTAAG 59.503 40.741 1.10 0.00 0.00 2.34
3587 4405 8.260818 CCTGATTCAATGAAGACTAAGGTAAGA 58.739 37.037 1.10 0.00 0.00 2.10
3588 4406 9.658799 CTGATTCAATGAAGACTAAGGTAAGAA 57.341 33.333 1.10 0.00 0.00 2.52
3600 4418 9.602568 AGACTAAGGTAAGAAAATAAGCTAAGC 57.397 33.333 0.00 0.00 0.00 3.09
3601 4419 9.602568 GACTAAGGTAAGAAAATAAGCTAAGCT 57.397 33.333 0.00 0.00 42.56 3.74
3602 4420 9.602568 ACTAAGGTAAGAAAATAAGCTAAGCTC 57.397 33.333 0.00 0.00 38.25 4.09
3603 4421 7.867305 AAGGTAAGAAAATAAGCTAAGCTCC 57.133 36.000 0.00 0.00 38.25 4.70
3604 4422 6.049790 AGGTAAGAAAATAAGCTAAGCTCCG 58.950 40.000 0.00 0.00 38.25 4.63
3605 4423 4.884458 AAGAAAATAAGCTAAGCTCCGC 57.116 40.909 0.00 0.00 38.25 5.54
3606 4424 3.873910 AGAAAATAAGCTAAGCTCCGCA 58.126 40.909 9.51 0.00 38.25 5.69
3607 4425 4.261801 AGAAAATAAGCTAAGCTCCGCAA 58.738 39.130 9.51 0.00 38.25 4.85
3608 4426 4.700213 AGAAAATAAGCTAAGCTCCGCAAA 59.300 37.500 9.51 0.00 38.25 3.68
3609 4427 5.358160 AGAAAATAAGCTAAGCTCCGCAAAT 59.642 36.000 9.51 0.59 38.25 2.32
3610 4428 6.542370 AGAAAATAAGCTAAGCTCCGCAAATA 59.458 34.615 9.51 1.36 38.25 1.40
3611 4429 6.693315 AAATAAGCTAAGCTCCGCAAATAA 57.307 33.333 9.51 0.00 38.25 1.40
3612 4430 5.931441 ATAAGCTAAGCTCCGCAAATAAG 57.069 39.130 9.51 0.00 38.25 1.73
3613 4431 3.268023 AGCTAAGCTCCGCAAATAAGT 57.732 42.857 9.51 0.00 30.62 2.24
3614 4432 3.610911 AGCTAAGCTCCGCAAATAAGTT 58.389 40.909 9.51 0.00 30.62 2.66
3615 4433 3.375299 AGCTAAGCTCCGCAAATAAGTTG 59.625 43.478 9.51 0.00 35.42 3.16
3616 4434 3.374058 GCTAAGCTCCGCAAATAAGTTGA 59.626 43.478 2.61 0.00 39.87 3.18
3617 4435 4.142687 GCTAAGCTCCGCAAATAAGTTGAA 60.143 41.667 2.61 0.00 39.87 2.69
3618 4436 3.831715 AGCTCCGCAAATAAGTTGAAC 57.168 42.857 0.00 0.00 39.87 3.18
3619 4437 2.488153 AGCTCCGCAAATAAGTTGAACC 59.512 45.455 0.00 0.00 39.87 3.62
3620 4438 2.727916 GCTCCGCAAATAAGTTGAACCG 60.728 50.000 0.00 0.00 39.87 4.44
3621 4439 2.482721 CTCCGCAAATAAGTTGAACCGT 59.517 45.455 0.00 0.00 39.87 4.83
3622 4440 3.661944 TCCGCAAATAAGTTGAACCGTA 58.338 40.909 0.00 0.00 39.87 4.02
3623 4441 3.680937 TCCGCAAATAAGTTGAACCGTAG 59.319 43.478 0.00 0.00 39.87 3.51
3624 4442 3.680937 CCGCAAATAAGTTGAACCGTAGA 59.319 43.478 0.00 0.00 39.87 2.59
3625 4443 4.152759 CCGCAAATAAGTTGAACCGTAGAA 59.847 41.667 0.00 0.00 39.87 2.10
3626 4444 5.313623 CGCAAATAAGTTGAACCGTAGAAG 58.686 41.667 0.00 0.00 39.87 2.85
3627 4445 5.107220 CGCAAATAAGTTGAACCGTAGAAGT 60.107 40.000 0.00 0.00 39.87 3.01
3628 4446 6.089820 CGCAAATAAGTTGAACCGTAGAAGTA 59.910 38.462 0.00 0.00 39.87 2.24
3629 4447 7.359431 CGCAAATAAGTTGAACCGTAGAAGTAA 60.359 37.037 0.00 0.00 39.87 2.24
3630 4448 7.743400 GCAAATAAGTTGAACCGTAGAAGTAAC 59.257 37.037 0.00 0.00 39.87 2.50
3631 4449 8.767085 CAAATAAGTTGAACCGTAGAAGTAACA 58.233 33.333 0.00 0.00 39.87 2.41
3632 4450 9.498176 AAATAAGTTGAACCGTAGAAGTAACAT 57.502 29.630 0.00 0.00 0.00 2.71
3633 4451 8.699283 ATAAGTTGAACCGTAGAAGTAACATC 57.301 34.615 0.00 0.00 0.00 3.06
3634 4452 6.092955 AGTTGAACCGTAGAAGTAACATCA 57.907 37.500 0.00 0.00 0.00 3.07
3635 4453 6.157211 AGTTGAACCGTAGAAGTAACATCAG 58.843 40.000 0.00 0.00 0.00 2.90
3636 4454 4.491676 TGAACCGTAGAAGTAACATCAGC 58.508 43.478 0.00 0.00 0.00 4.26
3637 4455 4.219944 TGAACCGTAGAAGTAACATCAGCT 59.780 41.667 0.00 0.00 0.00 4.24
3638 4456 4.111375 ACCGTAGAAGTAACATCAGCTG 57.889 45.455 7.63 7.63 0.00 4.24
3639 4457 3.762288 ACCGTAGAAGTAACATCAGCTGA 59.238 43.478 20.79 20.79 0.00 4.26
3640 4458 4.402793 ACCGTAGAAGTAACATCAGCTGAT 59.597 41.667 23.75 23.75 34.56 2.90
3641 4459 5.593095 ACCGTAGAAGTAACATCAGCTGATA 59.407 40.000 28.27 11.27 32.63 2.15
3642 4460 5.915758 CCGTAGAAGTAACATCAGCTGATAC 59.084 44.000 28.27 21.98 34.28 2.24
3643 4461 6.459710 CCGTAGAAGTAACATCAGCTGATACA 60.460 42.308 28.27 13.62 36.00 2.29
3644 4462 6.415280 CGTAGAAGTAACATCAGCTGATACAC 59.585 42.308 28.27 22.98 36.00 2.90
3645 4463 6.537453 AGAAGTAACATCAGCTGATACACT 57.463 37.500 28.27 24.57 36.00 3.55
3646 4464 6.336566 AGAAGTAACATCAGCTGATACACTG 58.663 40.000 28.27 19.46 36.00 3.66
3647 4465 5.016051 AGTAACATCAGCTGATACACTGG 57.984 43.478 28.27 17.08 36.00 4.00
3648 4466 3.988976 AACATCAGCTGATACACTGGT 57.011 42.857 28.27 17.72 34.57 4.00
3649 4467 3.988976 ACATCAGCTGATACACTGGTT 57.011 42.857 28.27 1.43 34.57 3.67
3650 4468 4.292186 ACATCAGCTGATACACTGGTTT 57.708 40.909 28.27 0.61 34.57 3.27
3651 4469 4.655963 ACATCAGCTGATACACTGGTTTT 58.344 39.130 28.27 0.03 34.57 2.43
3652 4470 5.072741 ACATCAGCTGATACACTGGTTTTT 58.927 37.500 28.27 0.00 34.57 1.94
3653 4471 6.237901 ACATCAGCTGATACACTGGTTTTTA 58.762 36.000 28.27 0.00 34.57 1.52
3654 4472 6.372659 ACATCAGCTGATACACTGGTTTTTAG 59.627 38.462 28.27 13.19 34.57 1.85
3655 4473 4.695455 TCAGCTGATACACTGGTTTTTAGC 59.305 41.667 13.74 0.00 34.57 3.09
3656 4474 4.010349 AGCTGATACACTGGTTTTTAGCC 58.990 43.478 0.00 0.00 0.00 3.93
3657 4475 3.756434 GCTGATACACTGGTTTTTAGCCA 59.244 43.478 0.00 0.00 34.42 4.75
3658 4476 4.217550 GCTGATACACTGGTTTTTAGCCAA 59.782 41.667 0.00 0.00 35.32 4.52
3659 4477 5.105756 GCTGATACACTGGTTTTTAGCCAAT 60.106 40.000 0.00 0.00 35.32 3.16
3660 4478 6.509418 TGATACACTGGTTTTTAGCCAATC 57.491 37.500 0.00 0.00 35.32 2.67
3661 4479 6.007076 TGATACACTGGTTTTTAGCCAATCA 58.993 36.000 0.00 0.00 35.32 2.57
3662 4480 4.584327 ACACTGGTTTTTAGCCAATCAC 57.416 40.909 0.00 0.00 35.32 3.06
3663 4481 3.957497 ACACTGGTTTTTAGCCAATCACA 59.043 39.130 0.00 0.00 35.32 3.58
3664 4482 4.404073 ACACTGGTTTTTAGCCAATCACAA 59.596 37.500 0.00 0.00 35.32 3.33
3665 4483 5.105146 ACACTGGTTTTTAGCCAATCACAAA 60.105 36.000 0.00 0.00 35.32 2.83
3666 4484 5.990996 CACTGGTTTTTAGCCAATCACAAAT 59.009 36.000 0.00 0.00 35.32 2.32
3667 4485 5.990996 ACTGGTTTTTAGCCAATCACAAATG 59.009 36.000 0.00 0.00 35.32 2.32
3668 4486 5.303971 TGGTTTTTAGCCAATCACAAATGG 58.696 37.500 0.00 0.00 39.80 3.16
3675 4493 2.702261 CCAATCACAAATGGCCAAAGG 58.298 47.619 10.96 4.12 0.00 3.11
3676 4494 2.616001 CCAATCACAAATGGCCAAAGGG 60.616 50.000 10.96 3.46 37.18 3.95
3677 4495 1.278537 ATCACAAATGGCCAAAGGGG 58.721 50.000 10.96 2.54 40.85 4.79
3695 4513 2.357517 CACCGACTTGCCGAGCTT 60.358 61.111 0.00 0.00 0.00 3.74
3696 4514 2.357517 ACCGACTTGCCGAGCTTG 60.358 61.111 0.00 0.00 0.00 4.01
3697 4515 3.793144 CCGACTTGCCGAGCTTGC 61.793 66.667 0.00 0.00 0.00 4.01
3698 4516 2.740055 CGACTTGCCGAGCTTGCT 60.740 61.111 10.12 0.00 0.00 3.91
3699 4517 2.734673 CGACTTGCCGAGCTTGCTC 61.735 63.158 12.20 12.20 0.00 4.26
3700 4518 1.669115 GACTTGCCGAGCTTGCTCA 60.669 57.895 20.59 1.29 0.00 4.26
3701 4519 1.633852 GACTTGCCGAGCTTGCTCAG 61.634 60.000 20.59 11.78 0.00 3.35
3702 4520 2.359107 TTGCCGAGCTTGCTCAGG 60.359 61.111 20.59 20.64 0.00 3.86
3703 4521 2.793160 CTTGCCGAGCTTGCTCAGGA 62.793 60.000 25.63 14.39 0.00 3.86
3704 4522 2.511145 GCCGAGCTTGCTCAGGAG 60.511 66.667 25.63 13.06 0.00 3.69
3705 4523 3.011635 GCCGAGCTTGCTCAGGAGA 62.012 63.158 25.63 0.00 0.00 3.71
3706 4524 1.593787 CCGAGCTTGCTCAGGAGAA 59.406 57.895 20.59 0.00 0.00 2.87
3707 4525 0.459934 CCGAGCTTGCTCAGGAGAAG 60.460 60.000 20.59 4.36 0.00 2.85
3708 4526 1.083242 CGAGCTTGCTCAGGAGAAGC 61.083 60.000 20.59 17.87 39.55 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.617669 CATCATTGACCCGCGAAATAAC 58.382 45.455 8.23 0.00 0.00 1.89
14 15 1.226101 CACGCACGCATCATTGACC 60.226 57.895 0.00 0.00 0.00 4.02
17 18 2.290216 TACGCACGCACGCATCATTG 62.290 55.000 0.00 0.00 36.19 2.82
21 22 4.204891 GGTACGCACGCACGCATC 62.205 66.667 0.00 0.00 36.19 3.91
374 379 1.934589 TTTATGCCTGATGGACGACG 58.065 50.000 0.00 0.00 34.57 5.12
381 386 4.207224 CGTAGACGAGTTTTATGCCTGATG 59.793 45.833 0.00 0.00 43.02 3.07
461 471 2.270527 GAGGAGCTCAAGGTGGGC 59.729 66.667 17.19 0.00 46.33 5.36
462 472 2.993853 GGAGGAGCTCAAGGTGGG 59.006 66.667 17.19 0.00 31.08 4.61
463 473 2.581354 CGGAGGAGCTCAAGGTGG 59.419 66.667 17.19 0.00 31.08 4.61
464 474 2.125350 GCGGAGGAGCTCAAGGTG 60.125 66.667 17.19 1.90 31.08 4.00
511 1002 2.672996 GCAAGGCCGACACCATGT 60.673 61.111 0.00 0.00 30.98 3.21
542 1033 2.278857 GTCATGGCGCTCGTCGAT 60.279 61.111 7.64 0.00 41.67 3.59
580 1071 1.198759 CCGGTGGAAGAAAGAGGGGA 61.199 60.000 0.00 0.00 0.00 4.81
600 1091 2.436646 AATCGCTGGGTGCTTCGG 60.437 61.111 0.00 0.00 40.11 4.30
602 1093 0.449388 CAAGAATCGCTGGGTGCTTC 59.551 55.000 0.00 0.00 40.11 3.86
669 1160 1.372087 GCTTCCCTGCAAGATCGTGG 61.372 60.000 10.74 0.00 34.07 4.94
700 1191 3.879892 CTCCCTAAATCCTTTAGCTGCAC 59.120 47.826 1.02 0.00 40.96 4.57
716 1207 2.803285 AATCATGGCTCCTCTCCCTA 57.197 50.000 0.00 0.00 0.00 3.53
743 1234 1.594331 ATCAGATCGATCGTCGTCCA 58.406 50.000 19.33 0.00 41.35 4.02
749 1245 1.607148 TGGCGTAATCAGATCGATCGT 59.393 47.619 19.33 7.40 31.11 3.73
765 1261 1.721487 GATGGAAACCACGATGGCG 59.279 57.895 4.23 0.00 42.67 5.69
766 1262 1.024579 ACGATGGAAACCACGATGGC 61.025 55.000 15.26 0.00 42.67 4.40
767 1263 0.726827 CACGATGGAAACCACGATGG 59.273 55.000 15.26 0.00 45.02 3.51
768 1264 1.393539 GTCACGATGGAAACCACGATG 59.606 52.381 15.26 11.11 35.80 3.84
769 1265 1.001520 TGTCACGATGGAAACCACGAT 59.998 47.619 15.26 0.00 35.80 3.73
788 1285 2.525891 CACAACTCGAACGCAAAACTTG 59.474 45.455 0.00 0.00 0.00 3.16
789 1286 2.417239 TCACAACTCGAACGCAAAACTT 59.583 40.909 0.00 0.00 0.00 2.66
790 1287 2.004017 TCACAACTCGAACGCAAAACT 58.996 42.857 0.00 0.00 0.00 2.66
791 1288 2.445453 TCACAACTCGAACGCAAAAC 57.555 45.000 0.00 0.00 0.00 2.43
792 1289 3.547214 GGATTCACAACTCGAACGCAAAA 60.547 43.478 0.00 0.00 0.00 2.44
793 1290 2.032377 GGATTCACAACTCGAACGCAAA 60.032 45.455 0.00 0.00 0.00 3.68
794 1291 1.529438 GGATTCACAACTCGAACGCAA 59.471 47.619 0.00 0.00 0.00 4.85
795 1292 1.144969 GGATTCACAACTCGAACGCA 58.855 50.000 0.00 0.00 0.00 5.24
796 1293 1.429463 AGGATTCACAACTCGAACGC 58.571 50.000 0.00 0.00 0.00 4.84
797 1294 3.706994 GAAGGATTCACAACTCGAACG 57.293 47.619 0.00 0.00 46.62 3.95
829 1326 0.466189 TATACGACGTGTCCCCTCCC 60.466 60.000 11.56 0.00 0.00 4.30
885 1383 3.004734 GGTCGAATCATGGCCCAAATAAG 59.995 47.826 0.00 0.00 0.00 1.73
888 1386 1.063717 AGGTCGAATCATGGCCCAAAT 60.064 47.619 0.00 0.00 0.00 2.32
930 1428 0.319641 GTTCACGACACAGGTCCCTC 60.320 60.000 0.00 0.00 41.13 4.30
936 1434 1.254026 TCTAGGGTTCACGACACAGG 58.746 55.000 0.00 0.00 32.57 4.00
937 1435 3.380479 TTTCTAGGGTTCACGACACAG 57.620 47.619 0.00 0.00 32.57 3.66
938 1436 3.460103 GTTTTCTAGGGTTCACGACACA 58.540 45.455 0.00 0.00 32.57 3.72
945 1443 4.884668 ACAGATCGTTTTCTAGGGTTCA 57.115 40.909 0.00 0.00 0.00 3.18
954 1455 2.063266 TGCGTGGTACAGATCGTTTTC 58.937 47.619 0.00 0.00 41.80 2.29
955 1456 2.157834 TGCGTGGTACAGATCGTTTT 57.842 45.000 0.00 0.00 41.80 2.43
1248 1761 0.167470 CAGGCATGCGAAACAGACAG 59.833 55.000 12.44 0.00 0.00 3.51
1329 1858 9.483489 TCTACCCTACAGATCTAAACATACAAA 57.517 33.333 0.00 0.00 0.00 2.83
1332 1861 7.583230 CGTCTACCCTACAGATCTAAACATAC 58.417 42.308 0.00 0.00 0.00 2.39
1333 1862 6.206243 GCGTCTACCCTACAGATCTAAACATA 59.794 42.308 0.00 0.00 0.00 2.29
1334 1863 5.009811 GCGTCTACCCTACAGATCTAAACAT 59.990 44.000 0.00 0.00 0.00 2.71
1374 1913 1.448540 CCGGTGCTAGGAACTGCAG 60.449 63.158 13.48 13.48 41.48 4.41
1406 1947 0.319405 GGCCAGCTGCAAGAACAAAT 59.681 50.000 8.66 0.00 43.89 2.32
1484 2026 2.263741 CCAGGAGCTTGTGTGCACC 61.264 63.158 15.69 6.37 42.68 5.01
1520 2067 5.920903 TGTTATGGAAACCCCGAATAGTAG 58.079 41.667 0.00 0.00 37.93 2.57
1563 2110 5.630680 CAGCAAAATCGCAGAAGTAAAACAT 59.369 36.000 0.00 0.00 43.58 2.71
1579 2126 4.650588 TGGGAATTAGCATAGCAGCAAAAT 59.349 37.500 0.00 0.00 36.85 1.82
1581 2128 3.630168 TGGGAATTAGCATAGCAGCAAA 58.370 40.909 0.00 0.00 36.85 3.68
1633 2180 0.733223 GTCTCAGTCGGCCGAGAAAC 60.733 60.000 31.97 16.88 39.88 2.78
1652 2260 5.243060 TGGTCAACAGGGTCGTCTATATATG 59.757 44.000 0.00 0.00 0.00 1.78
1653 2261 5.391256 TGGTCAACAGGGTCGTCTATATAT 58.609 41.667 0.00 0.00 0.00 0.86
1655 2263 3.637229 CTGGTCAACAGGGTCGTCTATAT 59.363 47.826 0.00 0.00 43.70 0.86
1687 2295 5.167845 ACATGGAAGAACAACAACAACAAC 58.832 37.500 0.00 0.00 0.00 3.32
1688 2296 5.184864 AGACATGGAAGAACAACAACAACAA 59.815 36.000 0.00 0.00 0.00 2.83
1689 2297 4.704540 AGACATGGAAGAACAACAACAACA 59.295 37.500 0.00 0.00 0.00 3.33
1690 2298 5.036737 CAGACATGGAAGAACAACAACAAC 58.963 41.667 0.00 0.00 0.00 3.32
1691 2299 5.247507 CAGACATGGAAGAACAACAACAA 57.752 39.130 0.00 0.00 0.00 2.83
1692 2300 4.898829 CAGACATGGAAGAACAACAACA 57.101 40.909 0.00 0.00 0.00 3.33
1723 2331 3.425359 CCAGCTGCAGAAGTAAACATTCG 60.425 47.826 20.43 0.00 0.00 3.34
1766 2374 5.651530 CTGAGAAATTTACCGACTAGCAGA 58.348 41.667 0.00 0.00 0.00 4.26
1903 2517 1.326548 ACGACGACACAAAAGAGCAAC 59.673 47.619 0.00 0.00 0.00 4.17
1906 2520 2.732001 AAACGACGACACAAAAGAGC 57.268 45.000 0.00 0.00 0.00 4.09
2039 2766 3.375782 AAGGTGCACTTCAAATGCTTC 57.624 42.857 17.98 0.00 43.77 3.86
2103 2854 1.405526 GCACGGTAGATTTGCTCCAGA 60.406 52.381 0.00 0.00 33.26 3.86
2180 2931 5.505181 TGGAGATCTTTAGGAAGCAAAGT 57.495 39.130 0.00 0.00 35.08 2.66
2231 2990 7.502120 AGTACATCATGCAATTAGGAATGAC 57.498 36.000 0.00 0.00 0.00 3.06
2306 3065 3.189285 CAAAATGATGAACCAATCCGCC 58.811 45.455 0.00 0.00 0.00 6.13
2441 3205 4.008074 AGAAGCCATTTCTCGTTCTTCA 57.992 40.909 0.00 0.00 42.54 3.02
2632 3425 2.034558 CCTTTGTAGTTTGTGCCACCAG 59.965 50.000 0.00 0.00 0.00 4.00
2704 3497 4.460382 CAGTGGTGCCTTTGATAAGTCATT 59.540 41.667 0.00 0.00 33.56 2.57
2746 3539 5.199723 TCCAGCTCCAAATAATATGTGCAA 58.800 37.500 0.00 0.00 0.00 4.08
2747 3540 4.790937 TCCAGCTCCAAATAATATGTGCA 58.209 39.130 0.00 0.00 0.00 4.57
2788 3581 1.299541 CCTCGACAATGCCATACCAC 58.700 55.000 0.00 0.00 0.00 4.16
2832 3627 4.261801 GGAGCCAACTATAGCAACAGAAA 58.738 43.478 0.00 0.00 0.00 2.52
2844 3639 1.003839 CTTGCCACGGAGCCAACTA 60.004 57.895 0.00 0.00 0.00 2.24
2875 3670 3.122613 CGCACTCTTCTTTCACTTAGCTG 59.877 47.826 0.00 0.00 0.00 4.24
2876 3671 3.321497 CGCACTCTTCTTTCACTTAGCT 58.679 45.455 0.00 0.00 0.00 3.32
2878 3673 2.413453 GCCGCACTCTTCTTTCACTTAG 59.587 50.000 0.00 0.00 0.00 2.18
2879 3674 2.037251 AGCCGCACTCTTCTTTCACTTA 59.963 45.455 0.00 0.00 0.00 2.24
2882 3677 0.514691 CAGCCGCACTCTTCTTTCAC 59.485 55.000 0.00 0.00 0.00 3.18
2884 3679 1.499502 GCAGCCGCACTCTTCTTTC 59.500 57.895 0.00 0.00 38.36 2.62
2939 3741 3.096852 TCTTAATCTTCCTGGTCTCGCA 58.903 45.455 0.00 0.00 0.00 5.10
2974 3776 2.619074 GGCCAAGACAGTAGCAGGAAAT 60.619 50.000 0.00 0.00 0.00 2.17
3021 3826 0.874390 TTTGCATCTTGTGTCGCCTC 59.126 50.000 0.00 0.00 0.00 4.70
3044 3849 2.159393 CCCCTTGTGCATTTGATGTACG 60.159 50.000 0.00 0.00 46.98 3.67
3059 3864 3.009723 CTGCTACACATTACACCCCTTG 58.990 50.000 0.00 0.00 0.00 3.61
3121 3926 4.616181 AGGCGTGATTTATTTACAGCAC 57.384 40.909 0.00 0.00 0.00 4.40
3142 3947 5.008613 GTGTGGTTTTCATTGACTTCAGCTA 59.991 40.000 0.00 0.00 0.00 3.32
3210 4015 9.685276 TTCAGAATGTTGTCTTTGGTATATGAT 57.315 29.630 0.00 0.00 37.40 2.45
3211 4016 9.513906 TTTCAGAATGTTGTCTTTGGTATATGA 57.486 29.630 0.00 0.00 37.40 2.15
3214 4019 8.684386 TGTTTCAGAATGTTGTCTTTGGTATA 57.316 30.769 0.00 0.00 37.40 1.47
3220 4025 5.105917 ACGGTTGTTTCAGAATGTTGTCTTT 60.106 36.000 0.00 0.00 37.40 2.52
3232 4037 1.263217 GTGTAGCCACGGTTGTTTCAG 59.737 52.381 0.00 0.00 0.00 3.02
3261 4066 9.546428 AATTTGCCATATTTAAAATGACTAGCC 57.454 29.630 10.22 0.00 0.00 3.93
3297 4102 9.755064 CACACTAAACGATGTAAAAATAAGGAG 57.245 33.333 0.00 0.00 0.00 3.69
3301 4106 8.231837 GGCTCACACTAAACGATGTAAAAATAA 58.768 33.333 0.00 0.00 0.00 1.40
3303 4108 6.608610 GGCTCACACTAAACGATGTAAAAAT 58.391 36.000 0.00 0.00 0.00 1.82
3306 4111 3.676172 CGGCTCACACTAAACGATGTAAA 59.324 43.478 0.00 0.00 0.00 2.01
3307 4112 3.247442 CGGCTCACACTAAACGATGTAA 58.753 45.455 0.00 0.00 0.00 2.41
3308 4113 2.416296 CCGGCTCACACTAAACGATGTA 60.416 50.000 0.00 0.00 0.00 2.29
3314 4119 4.251268 ACTAATTCCGGCTCACACTAAAC 58.749 43.478 0.00 0.00 0.00 2.01
3326 4131 8.131100 TCTTGATACGTAAACTACTAATTCCGG 58.869 37.037 0.00 0.00 0.00 5.14
3339 4144 5.302360 AGCCAACACTTCTTGATACGTAAA 58.698 37.500 0.00 0.00 0.00 2.01
3340 4145 4.890088 AGCCAACACTTCTTGATACGTAA 58.110 39.130 0.00 0.00 0.00 3.18
3341 4146 4.219944 AGAGCCAACACTTCTTGATACGTA 59.780 41.667 0.00 0.00 0.00 3.57
3342 4147 3.006967 AGAGCCAACACTTCTTGATACGT 59.993 43.478 0.00 0.00 0.00 3.57
3343 4148 3.589988 AGAGCCAACACTTCTTGATACG 58.410 45.455 0.00 0.00 0.00 3.06
3344 4149 5.351740 GGTTAGAGCCAACACTTCTTGATAC 59.648 44.000 0.00 0.00 0.00 2.24
3345 4150 5.248477 AGGTTAGAGCCAACACTTCTTGATA 59.752 40.000 0.00 0.00 0.00 2.15
3346 4151 4.042187 AGGTTAGAGCCAACACTTCTTGAT 59.958 41.667 0.00 0.00 0.00 2.57
3376 4194 6.240292 GGACATATCTTGAAGACCCCCAATAT 60.240 42.308 0.00 0.00 0.00 1.28
3379 4197 3.202151 GGACATATCTTGAAGACCCCCAA 59.798 47.826 0.00 0.00 0.00 4.12
3387 4205 2.173356 TGGGGCTGGACATATCTTGAAG 59.827 50.000 0.00 0.00 0.00 3.02
3388 4206 2.092429 GTGGGGCTGGACATATCTTGAA 60.092 50.000 0.00 0.00 0.00 2.69
3392 4210 1.595311 TTGTGGGGCTGGACATATCT 58.405 50.000 0.00 0.00 0.00 1.98
3393 4211 2.435372 TTTGTGGGGCTGGACATATC 57.565 50.000 0.00 0.00 0.00 1.63
3394 4212 4.106179 TGATATTTGTGGGGCTGGACATAT 59.894 41.667 0.00 0.00 0.00 1.78
3395 4213 3.461458 TGATATTTGTGGGGCTGGACATA 59.539 43.478 0.00 0.00 0.00 2.29
3396 4214 2.244510 TGATATTTGTGGGGCTGGACAT 59.755 45.455 0.00 0.00 0.00 3.06
3397 4215 1.638070 TGATATTTGTGGGGCTGGACA 59.362 47.619 0.00 0.00 0.00 4.02
3398 4216 2.435372 TGATATTTGTGGGGCTGGAC 57.565 50.000 0.00 0.00 0.00 4.02
3399 4217 2.580322 TCTTGATATTTGTGGGGCTGGA 59.420 45.455 0.00 0.00 0.00 3.86
3400 4218 3.017048 TCTTGATATTTGTGGGGCTGG 57.983 47.619 0.00 0.00 0.00 4.85
3401 4219 5.404466 TTTTCTTGATATTTGTGGGGCTG 57.596 39.130 0.00 0.00 0.00 4.85
3402 4220 5.306678 TGTTTTTCTTGATATTTGTGGGGCT 59.693 36.000 0.00 0.00 0.00 5.19
3403 4221 5.546526 TGTTTTTCTTGATATTTGTGGGGC 58.453 37.500 0.00 0.00 0.00 5.80
3404 4222 6.092533 GCATGTTTTTCTTGATATTTGTGGGG 59.907 38.462 0.00 0.00 0.00 4.96
3405 4223 6.875195 AGCATGTTTTTCTTGATATTTGTGGG 59.125 34.615 0.00 0.00 0.00 4.61
3416 4234 5.237779 AGCAATTGGAAGCATGTTTTTCTTG 59.762 36.000 7.72 0.82 0.00 3.02
3417 4235 5.370679 AGCAATTGGAAGCATGTTTTTCTT 58.629 33.333 7.72 0.00 0.00 2.52
3422 4240 2.809696 GCAAGCAATTGGAAGCATGTTT 59.190 40.909 7.72 0.00 32.52 2.83
3425 4243 2.087501 TGCAAGCAATTGGAAGCATG 57.912 45.000 7.72 0.00 33.02 4.06
3441 4259 1.236616 CCTGTTCTTGCGACCATGCA 61.237 55.000 0.00 0.00 44.61 3.96
3445 4263 0.320374 CTACCCTGTTCTTGCGACCA 59.680 55.000 0.00 0.00 0.00 4.02
3492 4310 9.605275 CCAGAAATTCTGTATGAGATCAACTTA 57.395 33.333 20.18 0.00 42.80 2.24
3493 4311 8.105829 ACCAGAAATTCTGTATGAGATCAACTT 58.894 33.333 20.18 0.00 42.80 2.66
3494 4312 7.628234 ACCAGAAATTCTGTATGAGATCAACT 58.372 34.615 20.18 0.00 42.80 3.16
3495 4313 7.856145 ACCAGAAATTCTGTATGAGATCAAC 57.144 36.000 20.18 0.00 42.80 3.18
3496 4314 7.554118 GGAACCAGAAATTCTGTATGAGATCAA 59.446 37.037 20.18 0.00 42.80 2.57
3497 4315 7.050377 GGAACCAGAAATTCTGTATGAGATCA 58.950 38.462 20.18 0.00 42.80 2.92
3498 4316 7.278875 AGGAACCAGAAATTCTGTATGAGATC 58.721 38.462 20.18 9.34 42.80 2.75
3499 4317 7.205515 AGGAACCAGAAATTCTGTATGAGAT 57.794 36.000 20.18 1.05 42.80 2.75
3500 4318 6.627087 AGGAACCAGAAATTCTGTATGAGA 57.373 37.500 20.18 0.00 42.80 3.27
3501 4319 8.792830 TTTAGGAACCAGAAATTCTGTATGAG 57.207 34.615 20.18 8.19 42.80 2.90
3502 4320 8.383175 ACTTTAGGAACCAGAAATTCTGTATGA 58.617 33.333 20.18 0.00 42.80 2.15
3503 4321 8.567285 ACTTTAGGAACCAGAAATTCTGTATG 57.433 34.615 20.18 8.85 42.80 2.39
3504 4322 9.232473 GAACTTTAGGAACCAGAAATTCTGTAT 57.768 33.333 20.18 9.46 42.80 2.29
3505 4323 8.215050 TGAACTTTAGGAACCAGAAATTCTGTA 58.785 33.333 20.18 4.48 42.80 2.74
3506 4324 7.060421 TGAACTTTAGGAACCAGAAATTCTGT 58.940 34.615 20.18 4.12 42.80 3.41
3507 4325 7.510549 TGAACTTTAGGAACCAGAAATTCTG 57.489 36.000 15.64 15.64 43.91 3.02
3508 4326 7.725844 ACATGAACTTTAGGAACCAGAAATTCT 59.274 33.333 0.00 0.00 0.00 2.40
3509 4327 7.809806 CACATGAACTTTAGGAACCAGAAATTC 59.190 37.037 0.00 0.00 0.00 2.17
3510 4328 7.661040 CACATGAACTTTAGGAACCAGAAATT 58.339 34.615 0.00 0.00 0.00 1.82
3511 4329 6.294731 GCACATGAACTTTAGGAACCAGAAAT 60.295 38.462 0.00 0.00 0.00 2.17
3512 4330 5.009610 GCACATGAACTTTAGGAACCAGAAA 59.990 40.000 0.00 0.00 0.00 2.52
3513 4331 4.518970 GCACATGAACTTTAGGAACCAGAA 59.481 41.667 0.00 0.00 0.00 3.02
3514 4332 4.072131 GCACATGAACTTTAGGAACCAGA 58.928 43.478 0.00 0.00 0.00 3.86
3515 4333 3.191371 GGCACATGAACTTTAGGAACCAG 59.809 47.826 0.00 0.00 0.00 4.00
3516 4334 3.153919 GGCACATGAACTTTAGGAACCA 58.846 45.455 0.00 0.00 0.00 3.67
3517 4335 3.153919 TGGCACATGAACTTTAGGAACC 58.846 45.455 0.00 0.00 0.00 3.62
3518 4336 3.821033 ACTGGCACATGAACTTTAGGAAC 59.179 43.478 0.00 0.00 38.20 3.62
3519 4337 4.072131 GACTGGCACATGAACTTTAGGAA 58.928 43.478 0.00 0.00 38.20 3.36
3520 4338 3.072330 TGACTGGCACATGAACTTTAGGA 59.928 43.478 0.00 0.00 38.20 2.94
3521 4339 3.411446 TGACTGGCACATGAACTTTAGG 58.589 45.455 0.00 0.00 38.20 2.69
3522 4340 6.108687 TCTATGACTGGCACATGAACTTTAG 58.891 40.000 0.00 0.00 38.20 1.85
3523 4341 6.048732 TCTATGACTGGCACATGAACTTTA 57.951 37.500 0.00 0.00 38.20 1.85
3524 4342 4.910195 TCTATGACTGGCACATGAACTTT 58.090 39.130 0.00 0.00 38.20 2.66
3525 4343 4.558226 TCTATGACTGGCACATGAACTT 57.442 40.909 0.00 0.00 38.20 2.66
3526 4344 4.256920 GTTCTATGACTGGCACATGAACT 58.743 43.478 14.07 0.00 38.20 3.01
3527 4345 4.002982 TGTTCTATGACTGGCACATGAAC 58.997 43.478 14.32 14.32 38.20 3.18
3528 4346 4.002982 GTGTTCTATGACTGGCACATGAA 58.997 43.478 0.00 1.43 38.20 2.57
3529 4347 3.007831 TGTGTTCTATGACTGGCACATGA 59.992 43.478 0.00 0.00 38.20 3.07
3530 4348 3.125829 GTGTGTTCTATGACTGGCACATG 59.874 47.826 1.16 0.00 38.76 3.21
3531 4349 3.008375 AGTGTGTTCTATGACTGGCACAT 59.992 43.478 0.00 0.00 38.76 3.21
3532 4350 2.368548 AGTGTGTTCTATGACTGGCACA 59.631 45.455 0.00 0.00 34.95 4.57
3533 4351 2.738846 CAGTGTGTTCTATGACTGGCAC 59.261 50.000 0.00 0.00 33.58 5.01
3534 4352 2.632512 TCAGTGTGTTCTATGACTGGCA 59.367 45.455 0.00 0.00 37.11 4.92
3535 4353 3.319137 TCAGTGTGTTCTATGACTGGC 57.681 47.619 0.00 0.00 37.11 4.85
3536 4354 4.108336 CGATCAGTGTGTTCTATGACTGG 58.892 47.826 0.00 0.00 37.11 4.00
3537 4355 4.795795 GTCGATCAGTGTGTTCTATGACTG 59.204 45.833 0.00 0.00 37.72 3.51
3538 4356 4.142359 GGTCGATCAGTGTGTTCTATGACT 60.142 45.833 0.00 0.00 0.00 3.41
3539 4357 4.106197 GGTCGATCAGTGTGTTCTATGAC 58.894 47.826 0.00 0.00 0.00 3.06
3540 4358 3.130516 GGGTCGATCAGTGTGTTCTATGA 59.869 47.826 0.00 0.00 0.00 2.15
3541 4359 3.131223 AGGGTCGATCAGTGTGTTCTATG 59.869 47.826 0.00 0.00 0.00 2.23
3542 4360 3.131223 CAGGGTCGATCAGTGTGTTCTAT 59.869 47.826 0.00 0.00 0.00 1.98
3543 4361 2.492088 CAGGGTCGATCAGTGTGTTCTA 59.508 50.000 0.00 0.00 0.00 2.10
3544 4362 1.273606 CAGGGTCGATCAGTGTGTTCT 59.726 52.381 0.00 0.00 0.00 3.01
3545 4363 1.272490 TCAGGGTCGATCAGTGTGTTC 59.728 52.381 0.00 0.00 0.00 3.18
3546 4364 1.338107 TCAGGGTCGATCAGTGTGTT 58.662 50.000 0.00 0.00 0.00 3.32
3547 4365 1.561643 ATCAGGGTCGATCAGTGTGT 58.438 50.000 0.00 0.00 0.00 3.72
3548 4366 2.094026 TGAATCAGGGTCGATCAGTGTG 60.094 50.000 0.00 0.00 0.00 3.82
3549 4367 2.179427 TGAATCAGGGTCGATCAGTGT 58.821 47.619 0.00 0.00 0.00 3.55
3550 4368 2.967599 TGAATCAGGGTCGATCAGTG 57.032 50.000 0.00 0.00 0.00 3.66
3551 4369 3.452264 TCATTGAATCAGGGTCGATCAGT 59.548 43.478 0.00 0.00 0.00 3.41
3552 4370 4.063998 TCATTGAATCAGGGTCGATCAG 57.936 45.455 0.00 0.00 0.00 2.90
3553 4371 4.162131 TCTTCATTGAATCAGGGTCGATCA 59.838 41.667 0.00 0.00 0.00 2.92
3554 4372 4.509600 GTCTTCATTGAATCAGGGTCGATC 59.490 45.833 0.00 0.00 0.00 3.69
3555 4373 4.163078 AGTCTTCATTGAATCAGGGTCGAT 59.837 41.667 0.00 0.00 0.00 3.59
3556 4374 3.515502 AGTCTTCATTGAATCAGGGTCGA 59.484 43.478 0.00 0.00 0.00 4.20
3557 4375 3.866651 AGTCTTCATTGAATCAGGGTCG 58.133 45.455 0.00 0.00 0.00 4.79
3558 4376 5.819901 CCTTAGTCTTCATTGAATCAGGGTC 59.180 44.000 0.00 0.00 0.00 4.46
3559 4377 5.251700 ACCTTAGTCTTCATTGAATCAGGGT 59.748 40.000 0.00 2.18 0.00 4.34
3560 4378 5.749462 ACCTTAGTCTTCATTGAATCAGGG 58.251 41.667 0.00 1.62 0.00 4.45
3561 4379 8.260818 TCTTACCTTAGTCTTCATTGAATCAGG 58.739 37.037 0.00 4.25 0.00 3.86
3562 4380 9.658799 TTCTTACCTTAGTCTTCATTGAATCAG 57.341 33.333 0.00 0.00 0.00 2.90
3574 4392 9.602568 GCTTAGCTTATTTTCTTACCTTAGTCT 57.397 33.333 0.00 0.00 0.00 3.24
3575 4393 9.602568 AGCTTAGCTTATTTTCTTACCTTAGTC 57.397 33.333 0.00 0.00 33.89 2.59
3576 4394 9.602568 GAGCTTAGCTTATTTTCTTACCTTAGT 57.397 33.333 8.58 0.00 39.88 2.24
3577 4395 9.047371 GGAGCTTAGCTTATTTTCTTACCTTAG 57.953 37.037 8.58 0.00 39.88 2.18
3578 4396 7.709613 CGGAGCTTAGCTTATTTTCTTACCTTA 59.290 37.037 8.58 0.00 39.88 2.69
3579 4397 6.539103 CGGAGCTTAGCTTATTTTCTTACCTT 59.461 38.462 8.58 0.00 39.88 3.50
3580 4398 6.049790 CGGAGCTTAGCTTATTTTCTTACCT 58.950 40.000 8.58 0.00 39.88 3.08
3581 4399 6.288426 CGGAGCTTAGCTTATTTTCTTACC 57.712 41.667 8.58 0.00 39.88 2.85
3600 4418 2.482721 ACGGTTCAACTTATTTGCGGAG 59.517 45.455 0.00 0.00 34.88 4.63
3601 4419 2.496111 ACGGTTCAACTTATTTGCGGA 58.504 42.857 0.00 0.00 34.88 5.54
3602 4420 2.981400 ACGGTTCAACTTATTTGCGG 57.019 45.000 0.00 0.00 34.88 5.69
3603 4421 4.914312 TCTACGGTTCAACTTATTTGCG 57.086 40.909 0.00 0.00 34.88 4.85
3604 4422 6.237313 ACTTCTACGGTTCAACTTATTTGC 57.763 37.500 0.00 0.00 34.88 3.68
3605 4423 8.767085 TGTTACTTCTACGGTTCAACTTATTTG 58.233 33.333 0.00 0.00 36.42 2.32
3606 4424 8.891671 TGTTACTTCTACGGTTCAACTTATTT 57.108 30.769 0.00 0.00 0.00 1.40
3607 4425 9.148104 GATGTTACTTCTACGGTTCAACTTATT 57.852 33.333 0.00 0.00 0.00 1.40
3608 4426 8.308931 TGATGTTACTTCTACGGTTCAACTTAT 58.691 33.333 0.17 0.00 0.00 1.73
3609 4427 7.660112 TGATGTTACTTCTACGGTTCAACTTA 58.340 34.615 0.17 0.00 0.00 2.24
3610 4428 6.518493 TGATGTTACTTCTACGGTTCAACTT 58.482 36.000 0.17 0.00 0.00 2.66
3611 4429 6.092955 TGATGTTACTTCTACGGTTCAACT 57.907 37.500 0.17 0.00 0.00 3.16
3612 4430 5.163982 GCTGATGTTACTTCTACGGTTCAAC 60.164 44.000 0.17 0.00 0.00 3.18
3613 4431 4.927425 GCTGATGTTACTTCTACGGTTCAA 59.073 41.667 0.17 0.00 0.00 2.69
3614 4432 4.219944 AGCTGATGTTACTTCTACGGTTCA 59.780 41.667 0.00 0.00 0.00 3.18
3615 4433 4.563184 CAGCTGATGTTACTTCTACGGTTC 59.437 45.833 8.42 0.00 0.00 3.62
3616 4434 4.219944 TCAGCTGATGTTACTTCTACGGTT 59.780 41.667 13.74 0.00 0.00 4.44
3617 4435 3.762288 TCAGCTGATGTTACTTCTACGGT 59.238 43.478 13.74 0.00 0.00 4.83
3618 4436 4.371855 TCAGCTGATGTTACTTCTACGG 57.628 45.455 13.74 0.00 0.00 4.02
3619 4437 6.415280 GTGTATCAGCTGATGTTACTTCTACG 59.585 42.308 34.48 0.00 35.80 3.51
3620 4438 7.433719 CAGTGTATCAGCTGATGTTACTTCTAC 59.566 40.741 34.48 22.33 35.80 2.59
3621 4439 7.416777 CCAGTGTATCAGCTGATGTTACTTCTA 60.417 40.741 34.48 12.25 35.80 2.10
3622 4440 6.336566 CAGTGTATCAGCTGATGTTACTTCT 58.663 40.000 34.48 22.56 35.80 2.85
3623 4441 5.521735 CCAGTGTATCAGCTGATGTTACTTC 59.478 44.000 34.48 21.12 35.80 3.01
3624 4442 5.046304 ACCAGTGTATCAGCTGATGTTACTT 60.046 40.000 34.48 18.89 35.80 2.24
3625 4443 4.467795 ACCAGTGTATCAGCTGATGTTACT 59.532 41.667 34.48 28.72 35.80 2.24
3626 4444 4.759782 ACCAGTGTATCAGCTGATGTTAC 58.240 43.478 34.48 27.33 36.05 2.50
3627 4445 5.420725 AACCAGTGTATCAGCTGATGTTA 57.579 39.130 34.48 19.43 36.05 2.41
3628 4446 3.988976 ACCAGTGTATCAGCTGATGTT 57.011 42.857 34.48 15.94 36.05 2.71
3629 4447 3.988976 AACCAGTGTATCAGCTGATGT 57.011 42.857 34.48 21.44 36.05 3.06
3630 4448 5.633830 AAAAACCAGTGTATCAGCTGATG 57.366 39.130 34.48 21.05 36.05 3.07
3631 4449 5.355350 GCTAAAAACCAGTGTATCAGCTGAT 59.645 40.000 30.85 30.85 38.51 2.90
3632 4450 4.695455 GCTAAAAACCAGTGTATCAGCTGA 59.305 41.667 20.79 20.79 34.87 4.26
3633 4451 4.142600 GGCTAAAAACCAGTGTATCAGCTG 60.143 45.833 7.63 7.63 0.00 4.24
3634 4452 4.010349 GGCTAAAAACCAGTGTATCAGCT 58.990 43.478 0.00 0.00 0.00 4.24
3635 4453 3.756434 TGGCTAAAAACCAGTGTATCAGC 59.244 43.478 0.00 0.00 32.06 4.26
3636 4454 5.957842 TTGGCTAAAAACCAGTGTATCAG 57.042 39.130 0.00 0.00 38.73 2.90
3637 4455 6.007076 TGATTGGCTAAAAACCAGTGTATCA 58.993 36.000 0.00 0.00 38.73 2.15
3638 4456 6.072175 TGTGATTGGCTAAAAACCAGTGTATC 60.072 38.462 0.00 0.00 38.73 2.24
3639 4457 5.772672 TGTGATTGGCTAAAAACCAGTGTAT 59.227 36.000 0.00 0.00 38.73 2.29
3640 4458 5.133941 TGTGATTGGCTAAAAACCAGTGTA 58.866 37.500 0.00 0.00 38.73 2.90
3641 4459 3.957497 TGTGATTGGCTAAAAACCAGTGT 59.043 39.130 0.00 0.00 38.73 3.55
3642 4460 4.582701 TGTGATTGGCTAAAAACCAGTG 57.417 40.909 0.00 0.00 38.73 3.66
3643 4461 5.606348 TTTGTGATTGGCTAAAAACCAGT 57.394 34.783 0.00 0.00 38.73 4.00
3644 4462 5.409214 CCATTTGTGATTGGCTAAAAACCAG 59.591 40.000 0.00 0.00 38.73 4.00
3645 4463 5.303971 CCATTTGTGATTGGCTAAAAACCA 58.696 37.500 0.00 0.00 34.65 3.67
3646 4464 5.861222 CCATTTGTGATTGGCTAAAAACC 57.139 39.130 0.00 0.00 0.00 3.27
3655 4473 2.616001 CCCTTTGGCCATTTGTGATTGG 60.616 50.000 6.09 0.00 36.03 3.16
3656 4474 2.616001 CCCCTTTGGCCATTTGTGATTG 60.616 50.000 6.09 0.00 0.00 2.67
3657 4475 1.629861 CCCCTTTGGCCATTTGTGATT 59.370 47.619 6.09 0.00 0.00 2.57
3658 4476 1.278537 CCCCTTTGGCCATTTGTGAT 58.721 50.000 6.09 0.00 0.00 3.06
3659 4477 2.757313 CCCCTTTGGCCATTTGTGA 58.243 52.632 6.09 0.00 0.00 3.58
3669 4487 2.115266 AAGTCGGTGCCCCTTTGG 59.885 61.111 0.00 0.00 37.09 3.28
3670 4488 2.919494 GCAAGTCGGTGCCCCTTTG 61.919 63.158 0.00 0.00 38.66 2.77
3671 4489 2.597510 GCAAGTCGGTGCCCCTTT 60.598 61.111 0.00 0.00 38.66 3.11
3678 4496 2.357517 AAGCTCGGCAAGTCGGTG 60.358 61.111 0.00 0.00 0.00 4.94
3679 4497 2.357517 CAAGCTCGGCAAGTCGGT 60.358 61.111 0.00 0.00 0.00 4.69
3680 4498 3.793144 GCAAGCTCGGCAAGTCGG 61.793 66.667 5.52 0.00 0.00 4.79
3681 4499 2.734673 GAGCAAGCTCGGCAAGTCG 61.735 63.158 6.28 0.00 33.06 4.18
3682 4500 1.633852 CTGAGCAAGCTCGGCAAGTC 61.634 60.000 17.09 2.87 45.48 3.01
3683 4501 1.670406 CTGAGCAAGCTCGGCAAGT 60.670 57.895 17.09 0.00 45.48 3.16
3684 4502 2.396955 CCTGAGCAAGCTCGGCAAG 61.397 63.158 22.38 11.69 45.49 4.01
3685 4503 2.359107 CCTGAGCAAGCTCGGCAA 60.359 61.111 22.38 2.86 45.49 4.52
3686 4504 3.306595 CTCCTGAGCAAGCTCGGCA 62.307 63.158 22.38 9.68 45.49 5.69
3687 4505 2.511145 CTCCTGAGCAAGCTCGGC 60.511 66.667 22.38 2.25 45.49 5.54
3688 4506 0.459934 CTTCTCCTGAGCAAGCTCGG 60.460 60.000 21.16 21.16 45.48 4.63
3689 4507 1.083242 GCTTCTCCTGAGCAAGCTCG 61.083 60.000 16.45 11.17 45.48 5.03
3690 4508 2.766239 GCTTCTCCTGAGCAAGCTC 58.234 57.895 14.90 14.90 43.01 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.