Multiple sequence alignment - TraesCS5D01G330500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G330500 chr5D 100.000 4538 0 0 918 5455 421849168 421853705 0.000000e+00 8381.0
1 TraesCS5D01G330500 chr5D 100.000 711 0 0 1 711 421848251 421848961 0.000000e+00 1314.0
2 TraesCS5D01G330500 chr5D 90.476 105 10 0 2554 2658 421850750 421850854 7.370000e-29 139.0
3 TraesCS5D01G330500 chr5D 90.476 105 10 0 2500 2604 421850804 421850908 7.370000e-29 139.0
4 TraesCS5D01G330500 chr5D 94.737 38 1 1 3840 3877 509430606 509430570 2.120000e-04 58.4
5 TraesCS5D01G330500 chr5D 92.105 38 3 0 5401 5438 428718185 428718148 3.000000e-03 54.7
6 TraesCS5D01G330500 chr5B 95.589 1655 49 11 1984 3633 508264915 508266550 0.000000e+00 2630.0
7 TraesCS5D01G330500 chr5B 92.737 1129 50 13 3752 4853 508266694 508267817 0.000000e+00 1602.0
8 TraesCS5D01G330500 chr5B 93.196 970 33 14 927 1873 508263691 508264650 0.000000e+00 1395.0
9 TraesCS5D01G330500 chr5B 82.171 387 38 17 4911 5295 508267822 508268179 2.470000e-78 303.0
10 TraesCS5D01G330500 chr5B 85.714 238 32 2 3608 3844 711156092 711155856 3.260000e-62 250.0
11 TraesCS5D01G330500 chr5B 83.835 266 17 15 451 711 508263398 508263642 4.250000e-56 230.0
12 TraesCS5D01G330500 chr5B 98.095 105 2 0 3747 3851 508266549 508266653 3.360000e-42 183.0
13 TraesCS5D01G330500 chr5B 92.188 128 8 2 3622 3748 446529755 446529629 4.340000e-41 180.0
14 TraesCS5D01G330500 chr5B 85.629 167 13 6 232 389 508262862 508263026 1.220000e-36 165.0
15 TraesCS5D01G330500 chr5B 90.476 105 10 0 2554 2658 508265428 508265532 7.370000e-29 139.0
16 TraesCS5D01G330500 chr5B 90.476 105 10 0 2500 2604 508265482 508265586 7.370000e-29 139.0
17 TraesCS5D01G330500 chr5B 80.986 142 22 5 44 181 523710461 523710321 2.080000e-19 108.0
18 TraesCS5D01G330500 chr5B 76.500 200 38 7 9 201 608363436 608363239 3.480000e-17 100.0
19 TraesCS5D01G330500 chr5B 100.000 31 0 0 918 948 508263670 508263700 2.120000e-04 58.4
20 TraesCS5D01G330500 chr5A 92.755 1325 57 13 3747 5052 535362689 535363993 0.000000e+00 1879.0
21 TraesCS5D01G330500 chr5A 92.166 1085 56 13 2554 3633 535361630 535362690 0.000000e+00 1506.0
22 TraesCS5D01G330500 chr5A 90.456 964 48 21 941 1887 535360183 535361119 0.000000e+00 1230.0
23 TraesCS5D01G330500 chr5A 94.949 396 17 1 2216 2608 535361343 535361738 7.760000e-173 617.0
24 TraesCS5D01G330500 chr5A 82.470 656 45 22 50 688 535358899 535359501 1.360000e-140 510.0
25 TraesCS5D01G330500 chr5A 93.671 158 8 2 1982 2137 535361184 535361341 9.130000e-58 235.0
26 TraesCS5D01G330500 chr5A 78.528 163 26 8 25 181 79278980 79278821 1.250000e-16 99.0
27 TraesCS5D01G330500 chr5A 94.118 51 3 0 2608 2658 535361630 535361680 1.630000e-10 78.7
28 TraesCS5D01G330500 chr5A 95.349 43 2 0 5405 5447 51205506 51205464 9.800000e-08 69.4
29 TraesCS5D01G330500 chr5A 94.595 37 1 1 3841 3877 438147702 438147737 7.630000e-04 56.5
30 TraesCS5D01G330500 chr5A 94.595 37 1 1 3841 3877 475466147 475466112 7.630000e-04 56.5
31 TraesCS5D01G330500 chr3D 87.281 228 26 3 3624 3849 386299471 386299697 1.950000e-64 257.0
32 TraesCS5D01G330500 chr3D 87.634 186 7 4 3253 3436 18426782 18426611 9.270000e-48 202.0
33 TraesCS5D01G330500 chr3D 83.168 101 14 3 57 154 16047062 16046962 7.530000e-14 89.8
34 TraesCS5D01G330500 chr3D 97.674 43 1 0 5401 5443 595758621 595758663 2.110000e-09 75.0
35 TraesCS5D01G330500 chr3D 83.582 67 11 0 127 193 181442085 181442151 4.560000e-06 63.9
36 TraesCS5D01G330500 chr3B 84.874 238 34 2 3613 3849 617435485 617435721 7.060000e-59 239.0
37 TraesCS5D01G330500 chr3B 89.474 57 4 1 5399 5455 706563640 706563586 2.730000e-08 71.3
38 TraesCS5D01G330500 chr2D 85.345 232 33 1 3611 3842 302261325 302261555 7.060000e-59 239.0
39 TraesCS5D01G330500 chr2D 89.474 57 4 2 5401 5455 598887510 598887454 2.730000e-08 71.3
40 TraesCS5D01G330500 chr2D 90.000 50 5 0 5400 5449 51165296 51165345 1.270000e-06 65.8
41 TraesCS5D01G330500 chr2D 87.037 54 7 0 5401 5454 469479841 469479788 1.640000e-05 62.1
42 TraesCS5D01G330500 chr2D 90.476 42 2 2 3840 3881 534642733 534642772 3.000000e-03 54.7
43 TraesCS5D01G330500 chr3A 88.304 171 20 0 3612 3782 435805358 435805188 7.160000e-49 206.0
44 TraesCS5D01G330500 chr3A 86.486 185 9 3 3254 3436 26004116 26004286 7.210000e-44 189.0
45 TraesCS5D01G330500 chr3A 91.538 130 11 0 3623 3752 400807026 400806897 4.340000e-41 180.0
46 TraesCS5D01G330500 chr3A 76.923 182 36 6 25 203 732636344 732636166 1.250000e-16 99.0
47 TraesCS5D01G330500 chrUn 87.097 186 8 4 3253 3436 37332897 37332726 4.310000e-46 196.0
48 TraesCS5D01G330500 chrUn 90.698 43 4 0 5401 5443 91238461 91238503 2.120000e-04 58.4
49 TraesCS5D01G330500 chr7A 83.645 214 29 5 3633 3842 510382259 510382048 4.310000e-46 196.0
50 TraesCS5D01G330500 chr7A 75.758 198 33 14 6 193 50240096 50240288 9.740000e-13 86.1
51 TraesCS5D01G330500 chr1B 94.118 119 7 0 3632 3750 325262096 325262214 1.210000e-41 182.0
52 TraesCS5D01G330500 chr1B 84.615 104 10 1 3747 3844 188913621 188913724 1.250000e-16 99.0
53 TraesCS5D01G330500 chr1B 77.095 179 30 10 31 203 47604545 47604718 5.820000e-15 93.5
54 TraesCS5D01G330500 chr2A 80.172 232 40 5 3613 3840 753540298 753540527 9.400000e-38 169.0
55 TraesCS5D01G330500 chr6B 79.000 200 33 7 9 201 661915499 661915696 1.590000e-25 128.0
56 TraesCS5D01G330500 chr4D 78.218 202 35 7 9 203 497257781 497257582 2.670000e-23 121.0
57 TraesCS5D01G330500 chr4D 77.083 192 31 9 9 193 126895127 126895312 1.250000e-16 99.0
58 TraesCS5D01G330500 chr4D 90.741 54 1 4 5404 5455 72413216 72413165 9.800000e-08 69.4
59 TraesCS5D01G330500 chr4D 90.741 54 1 4 5404 5455 72418523 72418574 9.800000e-08 69.4
60 TraesCS5D01G330500 chr4D 83.582 67 11 0 127 193 315922333 315922267 4.560000e-06 63.9
61 TraesCS5D01G330500 chr2B 86.792 106 13 1 3747 3851 694067894 694067999 3.450000e-22 117.0
62 TraesCS5D01G330500 chr1D 79.851 134 19 6 23 154 479112091 479112218 2.090000e-14 91.6
63 TraesCS5D01G330500 chr1D 75.132 189 37 9 9 189 47945231 47945045 4.530000e-11 80.5
64 TraesCS5D01G330500 chr1D 90.698 43 4 0 5401 5443 41460472 41460430 2.120000e-04 58.4
65 TraesCS5D01G330500 chr1D 81.579 76 7 4 121 193 21841820 21841749 7.630000e-04 56.5
66 TraesCS5D01G330500 chr1D 92.308 39 2 1 3840 3878 121405392 121405429 3.000000e-03 54.7
67 TraesCS5D01G330500 chr1D 84.211 57 5 4 5401 5455 384151935 384151881 1.000000e-02 52.8
68 TraesCS5D01G330500 chr7D 75.000 184 39 6 25 205 59108633 59108454 1.630000e-10 78.7
69 TraesCS5D01G330500 chr7D 89.130 46 4 1 3840 3885 221352522 221352478 7.630000e-04 56.5
70 TraesCS5D01G330500 chr6D 80.769 104 14 5 94 193 70434 70535 5.860000e-10 76.8
71 TraesCS5D01G330500 chr6D 100.000 29 0 0 5401 5429 28413769 28413797 3.000000e-03 54.7
72 TraesCS5D01G330500 chr1A 89.091 55 6 0 5401 5455 50301617 50301671 9.800000e-08 69.4
73 TraesCS5D01G330500 chr1A 87.273 55 7 0 5401 5455 50116749 50116803 4.560000e-06 63.9
74 TraesCS5D01G330500 chr1A 100.000 28 0 0 5401 5428 50702015 50702042 1.000000e-02 52.8
75 TraesCS5D01G330500 chr7B 91.111 45 4 0 5400 5444 666580416 666580372 1.640000e-05 62.1
76 TraesCS5D01G330500 chr4A 89.583 48 5 0 5403 5450 15645870 15645823 1.640000e-05 62.1
77 TraesCS5D01G330500 chr4B 100.000 31 0 0 5396 5426 463715547 463715577 2.120000e-04 58.4
78 TraesCS5D01G330500 chr6A 86.000 50 5 2 5401 5449 29492030 29491982 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G330500 chr5D 421848251 421853705 5454 False 2493.25 8381 95.238000 1 5455 4 chr5D.!!$F1 5454
1 TraesCS5D01G330500 chr5B 508262862 508268179 5317 False 684.44 2630 91.220400 232 5295 10 chr5B.!!$F1 5063
2 TraesCS5D01G330500 chr5A 535358899 535363993 5094 False 865.10 1879 91.512143 50 5052 7 chr5A.!!$F2 5002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 1042 0.100682 CGACAGACCGATCGAACCAT 59.899 55.0 18.66 0.00 40.86 3.55 F
1887 2711 0.099436 GCACCCTCGAATGATTGTGC 59.901 55.0 2.49 2.49 41.35 4.57 F
2800 3825 0.036732 ACACTTGTCCATGTCGGCAT 59.963 50.0 0.00 0.00 35.32 4.40 F
3648 4675 0.549950 AATACTCCCTCCGTCCGAGA 59.450 55.0 0.00 0.00 41.63 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2721 0.033504 ACAGTTCGCCGATGTTCTGT 59.966 50.0 8.24 8.24 0.00 3.41 R
3725 4752 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.0 5.23 0.00 44.66 2.24 R
3727 4754 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.0 5.23 0.00 44.66 1.40 R
5349 6544 0.036952 CCACAGGTTCTCGAGCACAT 60.037 55.0 16.98 7.08 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.124529 TTGACACCGGTGCTTGCA 60.125 55.556 34.26 22.76 0.00 4.08
18 19 1.528076 TTGACACCGGTGCTTGCAT 60.528 52.632 34.26 14.16 0.00 3.96
19 20 1.106351 TTGACACCGGTGCTTGCATT 61.106 50.000 34.26 13.33 0.00 3.56
20 21 0.250510 TGACACCGGTGCTTGCATTA 60.251 50.000 34.26 7.80 0.00 1.90
21 22 1.094785 GACACCGGTGCTTGCATTAT 58.905 50.000 34.26 11.67 0.00 1.28
22 23 1.472480 GACACCGGTGCTTGCATTATT 59.528 47.619 34.26 10.84 0.00 1.40
23 24 2.680841 GACACCGGTGCTTGCATTATTA 59.319 45.455 34.26 0.00 0.00 0.98
24 25 2.682856 ACACCGGTGCTTGCATTATTAG 59.317 45.455 34.26 5.83 0.00 1.73
25 26 2.942376 CACCGGTGCTTGCATTATTAGA 59.058 45.455 24.02 0.00 0.00 2.10
26 27 3.565482 CACCGGTGCTTGCATTATTAGAT 59.435 43.478 24.02 0.00 0.00 1.98
27 28 4.036734 CACCGGTGCTTGCATTATTAGATT 59.963 41.667 24.02 0.00 0.00 2.40
28 29 4.644685 ACCGGTGCTTGCATTATTAGATTT 59.355 37.500 6.12 0.00 0.00 2.17
29 30 5.825679 ACCGGTGCTTGCATTATTAGATTTA 59.174 36.000 6.12 0.00 0.00 1.40
30 31 6.490040 ACCGGTGCTTGCATTATTAGATTTAT 59.510 34.615 6.12 0.00 0.00 1.40
31 32 7.014230 ACCGGTGCTTGCATTATTAGATTTATT 59.986 33.333 6.12 0.00 0.00 1.40
32 33 7.867403 CCGGTGCTTGCATTATTAGATTTATTT 59.133 33.333 0.00 0.00 0.00 1.40
33 34 8.905702 CGGTGCTTGCATTATTAGATTTATTTC 58.094 33.333 0.00 0.00 0.00 2.17
34 35 9.748708 GGTGCTTGCATTATTAGATTTATTTCA 57.251 29.630 0.00 0.00 0.00 2.69
59 60 5.528043 TGTTTTGGTGATGTGCATTTAGT 57.472 34.783 0.00 0.00 0.00 2.24
135 137 2.131183 GATGATGTGCCGCTTAGTCTC 58.869 52.381 0.00 0.00 0.00 3.36
138 140 0.101399 ATGTGCCGCTTAGTCTCTCG 59.899 55.000 0.00 0.00 0.00 4.04
141 143 0.452184 TGCCGCTTAGTCTCTCGAAG 59.548 55.000 0.00 0.00 33.06 3.79
146 148 1.474879 GCTTAGTCTCTCGAAGGTGCT 59.525 52.381 0.00 0.00 31.09 4.40
156 158 2.693591 CTCGAAGGTGCTCATAGGGTTA 59.306 50.000 0.00 0.00 0.00 2.85
160 162 4.443621 GAAGGTGCTCATAGGGTTAAGAC 58.556 47.826 0.00 0.00 0.00 3.01
181 183 2.270923 GTGAGTGCATGCGTTCATAGA 58.729 47.619 21.95 0.00 0.00 1.98
189 191 1.385528 TGCGTTCATAGAGGCGAGTA 58.614 50.000 0.00 0.00 33.34 2.59
190 192 1.954382 TGCGTTCATAGAGGCGAGTAT 59.046 47.619 0.00 0.00 33.34 2.12
196 198 5.966503 CGTTCATAGAGGCGAGTATATAAGC 59.033 44.000 0.00 0.00 0.00 3.09
199 201 3.833545 AGAGGCGAGTATATAAGCGTG 57.166 47.619 6.18 0.00 0.00 5.34
209 211 7.622880 GCGAGTATATAAGCGTGTGTGTCTATA 60.623 40.741 7.17 0.00 0.00 1.31
210 212 7.687347 CGAGTATATAAGCGTGTGTGTCTATAC 59.313 40.741 0.00 0.00 0.00 1.47
211 213 7.814642 AGTATATAAGCGTGTGTGTCTATACC 58.185 38.462 0.00 0.00 0.00 2.73
212 214 4.994907 ATAAGCGTGTGTGTCTATACCA 57.005 40.909 0.00 0.00 0.00 3.25
213 215 3.887621 AAGCGTGTGTGTCTATACCAT 57.112 42.857 0.00 0.00 0.00 3.55
214 216 3.165058 AGCGTGTGTGTCTATACCATG 57.835 47.619 0.00 0.00 0.00 3.66
215 217 2.496070 AGCGTGTGTGTCTATACCATGT 59.504 45.455 0.00 0.00 0.00 3.21
216 218 3.056107 AGCGTGTGTGTCTATACCATGTT 60.056 43.478 0.00 0.00 0.00 2.71
217 219 3.062099 GCGTGTGTGTCTATACCATGTTG 59.938 47.826 0.00 0.00 0.00 3.33
218 220 4.490743 CGTGTGTGTCTATACCATGTTGA 58.509 43.478 0.00 0.00 0.00 3.18
219 221 4.926832 CGTGTGTGTCTATACCATGTTGAA 59.073 41.667 0.00 0.00 0.00 2.69
220 222 5.062183 CGTGTGTGTCTATACCATGTTGAAG 59.938 44.000 0.00 0.00 0.00 3.02
221 223 6.163476 GTGTGTGTCTATACCATGTTGAAGA 58.837 40.000 0.00 0.00 0.00 2.87
222 224 6.649141 GTGTGTGTCTATACCATGTTGAAGAA 59.351 38.462 0.00 0.00 0.00 2.52
223 225 7.172532 GTGTGTGTCTATACCATGTTGAAGAAA 59.827 37.037 0.00 0.00 0.00 2.52
224 226 7.717436 TGTGTGTCTATACCATGTTGAAGAAAA 59.283 33.333 0.00 0.00 0.00 2.29
225 227 8.564574 GTGTGTCTATACCATGTTGAAGAAAAA 58.435 33.333 0.00 0.00 0.00 1.94
306 309 1.574428 CGTGCAAAGCGGCTAGTTT 59.426 52.632 1.35 0.00 34.04 2.66
310 313 1.266718 TGCAAAGCGGCTAGTTTTCTG 59.733 47.619 1.35 0.00 30.63 3.02
341 344 9.469807 CAAATATCTCATAATATCTAGCCGACC 57.530 37.037 0.00 0.00 0.00 4.79
348 351 1.998444 TATCTAGCCGACCGGTGGGA 61.998 60.000 36.92 18.06 37.65 4.37
448 786 9.850198 AGTAGTACTCCAAAATACTCCTACTAG 57.150 37.037 0.00 0.00 32.94 2.57
467 805 1.003759 AGTACTTCGCTATCGTGCTCG 60.004 52.381 0.81 0.81 36.96 5.03
516 854 1.068921 CCCAACCAAAACCCAAGCG 59.931 57.895 0.00 0.00 0.00 4.68
538 881 3.441163 GAAACCCAAACCGAAACTGAAC 58.559 45.455 0.00 0.00 0.00 3.18
539 882 2.131776 ACCCAAACCGAAACTGAACA 57.868 45.000 0.00 0.00 0.00 3.18
540 883 2.448453 ACCCAAACCGAAACTGAACAA 58.552 42.857 0.00 0.00 0.00 2.83
541 884 2.425668 ACCCAAACCGAAACTGAACAAG 59.574 45.455 0.00 0.00 0.00 3.16
544 887 3.243068 CCAAACCGAAACTGAACAAGAGG 60.243 47.826 0.00 0.00 0.00 3.69
689 1042 0.100682 CGACAGACCGATCGAACCAT 59.899 55.000 18.66 0.00 40.86 3.55
690 1043 1.841450 GACAGACCGATCGAACCATC 58.159 55.000 18.66 4.80 0.00 3.51
691 1044 0.460311 ACAGACCGATCGAACCATCC 59.540 55.000 18.66 0.00 0.00 3.51
692 1045 0.747255 CAGACCGATCGAACCATCCT 59.253 55.000 18.66 0.00 0.00 3.24
693 1046 1.137086 CAGACCGATCGAACCATCCTT 59.863 52.381 18.66 0.00 0.00 3.36
1392 2199 0.179000 CTCTTCTGTCCCCATTCCCG 59.821 60.000 0.00 0.00 0.00 5.14
1402 2211 3.864686 CATTCCCGCGCCGTCTTG 61.865 66.667 0.00 0.00 0.00 3.02
1439 2252 0.589729 CCAATTGCGCCTCGATTTCG 60.590 55.000 4.18 0.00 41.45 3.46
1468 2285 8.914654 CAGATGTAGTACTAGTACTAGTTAGCG 58.085 40.741 33.38 20.27 45.97 4.26
1517 2334 1.000896 CGGCCCCTGTCCTGATTTT 60.001 57.895 0.00 0.00 0.00 1.82
1573 2394 4.480541 AGCGTGATAGATTTATCTCTGCG 58.519 43.478 4.99 5.64 38.32 5.18
1598 2419 1.262417 GGTCTCGGTCGGTTTTGTTTC 59.738 52.381 0.00 0.00 0.00 2.78
1656 2478 5.184287 GGTTTGTTAGGGCTTGTGCTTTATA 59.816 40.000 0.00 0.00 39.59 0.98
1657 2479 6.127451 GGTTTGTTAGGGCTTGTGCTTTATAT 60.127 38.462 0.00 0.00 39.59 0.86
1658 2480 6.693315 TTGTTAGGGCTTGTGCTTTATATC 57.307 37.500 0.00 0.00 39.59 1.63
1659 2481 5.130350 TGTTAGGGCTTGTGCTTTATATCC 58.870 41.667 0.00 0.00 39.59 2.59
1661 2483 3.825328 AGGGCTTGTGCTTTATATCCTG 58.175 45.455 0.00 0.00 39.59 3.86
1662 2484 3.203040 AGGGCTTGTGCTTTATATCCTGT 59.797 43.478 0.00 0.00 39.59 4.00
1663 2485 4.412199 AGGGCTTGTGCTTTATATCCTGTA 59.588 41.667 0.00 0.00 39.59 2.74
1664 2486 5.073691 AGGGCTTGTGCTTTATATCCTGTAT 59.926 40.000 0.00 0.00 39.59 2.29
1665 2487 6.272324 AGGGCTTGTGCTTTATATCCTGTATA 59.728 38.462 0.00 0.00 39.59 1.47
1666 2488 7.037297 AGGGCTTGTGCTTTATATCCTGTATAT 60.037 37.037 0.00 0.00 39.59 0.86
1667 2489 7.066284 GGGCTTGTGCTTTATATCCTGTATATG 59.934 40.741 0.00 0.00 39.59 1.78
1668 2490 7.607991 GGCTTGTGCTTTATATCCTGTATATGT 59.392 37.037 0.00 0.00 39.59 2.29
1883 2707 0.806102 CGTCGCACCCTCGAATGATT 60.806 55.000 0.00 0.00 40.43 2.57
1887 2711 0.099436 GCACCCTCGAATGATTGTGC 59.901 55.000 2.49 2.49 41.35 4.57
1888 2712 1.742761 CACCCTCGAATGATTGTGCT 58.257 50.000 0.00 0.00 0.00 4.40
1889 2713 2.905075 CACCCTCGAATGATTGTGCTA 58.095 47.619 0.00 0.00 0.00 3.49
1890 2714 3.470709 CACCCTCGAATGATTGTGCTAT 58.529 45.455 0.00 0.00 0.00 2.97
1891 2715 3.249320 CACCCTCGAATGATTGTGCTATG 59.751 47.826 0.00 0.00 0.00 2.23
1892 2716 2.225019 CCCTCGAATGATTGTGCTATGC 59.775 50.000 0.00 0.00 0.00 3.14
1893 2717 2.874086 CCTCGAATGATTGTGCTATGCA 59.126 45.455 0.00 0.00 35.60 3.96
1906 2730 3.797039 TGCTATGCACCTACAGAACATC 58.203 45.455 0.00 0.00 31.71 3.06
1910 2734 1.421410 GCACCTACAGAACATCGGCG 61.421 60.000 0.00 0.00 0.00 6.46
1923 2747 4.025401 CGGCGAACTGTTGGTGGC 62.025 66.667 0.00 0.00 0.00 5.01
1950 2931 6.869913 CCATTTAACACCTACTCGTAGTTTCA 59.130 38.462 3.64 0.00 0.00 2.69
1952 2933 8.592998 CATTTAACACCTACTCGTAGTTTCATC 58.407 37.037 3.64 0.00 0.00 2.92
1955 2936 5.467705 ACACCTACTCGTAGTTTCATCAAC 58.532 41.667 3.64 0.00 35.32 3.18
1972 2956 4.169059 TCAACCATGCATATTAGCCACT 57.831 40.909 0.00 0.00 0.00 4.00
1974 2958 4.338964 TCAACCATGCATATTAGCCACTTG 59.661 41.667 0.00 0.00 0.00 3.16
2019 3011 3.254657 GTGGCTACAACATGGCAAACTTA 59.745 43.478 0.00 0.00 40.35 2.24
2022 3014 4.684242 GGCTACAACATGGCAAACTTAAAC 59.316 41.667 0.00 0.00 36.24 2.01
2023 3015 5.285651 GCTACAACATGGCAAACTTAAACA 58.714 37.500 0.00 0.00 34.21 2.83
2024 3016 5.402270 GCTACAACATGGCAAACTTAAACAG 59.598 40.000 0.00 0.00 34.21 3.16
2025 3017 5.590530 ACAACATGGCAAACTTAAACAGA 57.409 34.783 0.00 0.00 0.00 3.41
2057 3052 4.021916 CTGCCAAGGATCCTTTTCTTGAT 58.978 43.478 24.93 0.00 39.97 2.57
2072 3067 4.556942 TCTTGATAAGGCATTTGCGATG 57.443 40.909 0.00 0.00 43.26 3.84
2111 3106 6.935240 TCTACCAGTATATCTGAAATGGGG 57.065 41.667 0.16 0.00 46.27 4.96
2137 3132 9.865321 GAGTTGTCACCACATAAGTAGTTTATA 57.135 33.333 0.00 0.00 30.75 0.98
2687 3685 4.317488 GGGTCCATGTTTCGTAGTGTAAA 58.683 43.478 0.00 0.00 0.00 2.01
2688 3686 4.756135 GGGTCCATGTTTCGTAGTGTAAAA 59.244 41.667 0.00 0.00 0.00 1.52
2689 3687 5.239087 GGGTCCATGTTTCGTAGTGTAAAAA 59.761 40.000 0.00 0.00 0.00 1.94
2690 3688 6.368213 GGTCCATGTTTCGTAGTGTAAAAAG 58.632 40.000 0.00 0.00 0.00 2.27
2691 3689 6.368213 GTCCATGTTTCGTAGTGTAAAAAGG 58.632 40.000 0.00 0.00 0.00 3.11
2692 3690 6.017687 GTCCATGTTTCGTAGTGTAAAAAGGT 60.018 38.462 0.00 0.00 0.00 3.50
2693 3691 6.203338 TCCATGTTTCGTAGTGTAAAAAGGTC 59.797 38.462 0.00 0.00 0.00 3.85
2694 3692 6.204108 CCATGTTTCGTAGTGTAAAAAGGTCT 59.796 38.462 0.00 0.00 0.00 3.85
2695 3693 6.592798 TGTTTCGTAGTGTAAAAAGGTCTG 57.407 37.500 0.00 0.00 0.00 3.51
2696 3694 6.108015 TGTTTCGTAGTGTAAAAAGGTCTGT 58.892 36.000 0.00 0.00 0.00 3.41
2697 3695 6.594937 TGTTTCGTAGTGTAAAAAGGTCTGTT 59.405 34.615 0.00 0.00 0.00 3.16
2698 3696 7.119553 TGTTTCGTAGTGTAAAAAGGTCTGTTT 59.880 33.333 0.00 0.00 0.00 2.83
2699 3697 7.614124 TTCGTAGTGTAAAAAGGTCTGTTTT 57.386 32.000 0.00 0.00 33.00 2.43
2700 3698 8.715191 TTCGTAGTGTAAAAAGGTCTGTTTTA 57.285 30.769 0.00 0.00 30.95 1.52
2701 3699 8.891671 TCGTAGTGTAAAAAGGTCTGTTTTAT 57.108 30.769 0.00 0.00 34.05 1.40
2702 3700 9.328845 TCGTAGTGTAAAAAGGTCTGTTTTATT 57.671 29.630 0.00 0.00 34.05 1.40
2703 3701 9.940166 CGTAGTGTAAAAAGGTCTGTTTTATTT 57.060 29.630 0.00 0.00 34.05 1.40
2706 3704 8.418662 AGTGTAAAAAGGTCTGTTTTATTTCCC 58.581 33.333 0.00 0.00 34.05 3.97
2707 3705 7.654520 GTGTAAAAAGGTCTGTTTTATTTCCCC 59.345 37.037 0.00 0.00 34.05 4.81
2708 3706 7.565768 TGTAAAAAGGTCTGTTTTATTTCCCCT 59.434 33.333 0.00 0.00 34.05 4.79
2709 3707 9.081204 GTAAAAAGGTCTGTTTTATTTCCCCTA 57.919 33.333 0.00 0.00 34.05 3.53
2710 3708 8.555896 AAAAAGGTCTGTTTTATTTCCCCTAA 57.444 30.769 0.00 0.00 0.00 2.69
2711 3709 8.555896 AAAAGGTCTGTTTTATTTCCCCTAAA 57.444 30.769 0.00 0.00 0.00 1.85
2712 3710 8.555896 AAAGGTCTGTTTTATTTCCCCTAAAA 57.444 30.769 0.00 0.00 0.00 1.52
2713 3711 8.555896 AAGGTCTGTTTTATTTCCCCTAAAAA 57.444 30.769 0.00 0.00 31.75 1.94
2796 3821 1.334059 GCACAACACTTGTCCATGTCG 60.334 52.381 0.00 0.00 43.23 4.35
2797 3822 1.264020 CACAACACTTGTCCATGTCGG 59.736 52.381 0.00 0.00 43.23 4.79
2798 3823 0.238289 CAACACTTGTCCATGTCGGC 59.762 55.000 0.00 0.00 33.14 5.54
2799 3824 0.179032 AACACTTGTCCATGTCGGCA 60.179 50.000 0.00 0.00 33.14 5.69
2800 3825 0.036732 ACACTTGTCCATGTCGGCAT 59.963 50.000 0.00 0.00 35.32 4.40
2925 3952 9.705290 ATATTTTCTTATTTTCGTGTTGCCTTT 57.295 25.926 0.00 0.00 0.00 3.11
3119 4146 2.589798 TTAGAACCCGGCAGAATACG 57.410 50.000 0.00 0.00 0.00 3.06
3144 4171 1.412079 TGGTGCCATTCTTTGTTGCT 58.588 45.000 0.00 0.00 0.00 3.91
3229 4256 6.963796 AGCAAAAGAGTTCATAGTGAAACAG 58.036 36.000 0.00 0.00 38.22 3.16
3558 4585 9.403583 AGACATGAAAGTTTTTCTAGTTAACCA 57.596 29.630 0.00 0.00 0.00 3.67
3618 4645 3.732212 TCAATCACTGGCATCTATTCCG 58.268 45.455 0.00 0.00 0.00 4.30
3623 4650 2.111384 ACTGGCATCTATTCCGTCTGT 58.889 47.619 0.00 0.00 0.00 3.41
3631 4658 5.992217 GCATCTATTCCGTCTGTTCCTAAAT 59.008 40.000 0.00 0.00 0.00 1.40
3632 4659 7.152645 GCATCTATTCCGTCTGTTCCTAAATA 58.847 38.462 0.00 0.00 0.00 1.40
3633 4660 7.116519 GCATCTATTCCGTCTGTTCCTAAATAC 59.883 40.741 0.00 0.00 0.00 1.89
3634 4661 7.893124 TCTATTCCGTCTGTTCCTAAATACT 57.107 36.000 0.00 0.00 0.00 2.12
3635 4662 7.938715 TCTATTCCGTCTGTTCCTAAATACTC 58.061 38.462 0.00 0.00 0.00 2.59
3636 4663 4.996788 TCCGTCTGTTCCTAAATACTCC 57.003 45.455 0.00 0.00 0.00 3.85
3637 4664 3.703052 TCCGTCTGTTCCTAAATACTCCC 59.297 47.826 0.00 0.00 0.00 4.30
3638 4665 3.705072 CCGTCTGTTCCTAAATACTCCCT 59.295 47.826 0.00 0.00 0.00 4.20
3639 4666 4.202131 CCGTCTGTTCCTAAATACTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
3640 4667 4.202131 CGTCTGTTCCTAAATACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
3641 4668 3.958798 TCTGTTCCTAAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
3642 4669 3.705072 CTGTTCCTAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
3643 4670 3.703052 TGTTCCTAAATACTCCCTCCGTC 59.297 47.826 0.00 0.00 0.00 4.79
3644 4671 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
3645 4672 1.612463 CCTAAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
3646 4673 2.579873 CTAAATACTCCCTCCGTCCGA 58.420 52.381 0.00 0.00 0.00 4.55
3647 4674 1.400737 AAATACTCCCTCCGTCCGAG 58.599 55.000 0.00 0.00 38.46 4.63
3648 4675 0.549950 AATACTCCCTCCGTCCGAGA 59.450 55.000 0.00 0.00 41.63 4.04
3649 4676 0.549950 ATACTCCCTCCGTCCGAGAA 59.450 55.000 0.00 0.00 41.63 2.87
3650 4677 0.549950 TACTCCCTCCGTCCGAGAAT 59.450 55.000 0.00 0.00 41.63 2.40
3651 4678 0.549950 ACTCCCTCCGTCCGAGAATA 59.450 55.000 0.00 0.00 41.63 1.75
3652 4679 0.953003 CTCCCTCCGTCCGAGAATAC 59.047 60.000 0.00 0.00 41.63 1.89
3653 4680 0.549950 TCCCTCCGTCCGAGAATACT 59.450 55.000 0.00 0.00 41.63 2.12
3654 4681 1.064166 TCCCTCCGTCCGAGAATACTT 60.064 52.381 0.00 0.00 41.63 2.24
3655 4682 1.067212 CCCTCCGTCCGAGAATACTTG 59.933 57.143 0.00 0.00 41.63 3.16
3656 4683 1.749634 CCTCCGTCCGAGAATACTTGT 59.250 52.381 0.00 0.00 41.63 3.16
3657 4684 2.223525 CCTCCGTCCGAGAATACTTGTC 60.224 54.545 0.00 0.00 41.63 3.18
3658 4685 2.422479 CTCCGTCCGAGAATACTTGTCA 59.578 50.000 0.00 0.00 41.63 3.58
3659 4686 2.821378 TCCGTCCGAGAATACTTGTCAA 59.179 45.455 0.00 0.00 0.00 3.18
3660 4687 3.256383 TCCGTCCGAGAATACTTGTCAAA 59.744 43.478 0.00 0.00 0.00 2.69
3661 4688 3.612860 CCGTCCGAGAATACTTGTCAAAG 59.387 47.826 0.00 0.00 39.49 2.77
3662 4689 4.482386 CGTCCGAGAATACTTGTCAAAGA 58.518 43.478 0.00 0.00 36.84 2.52
3663 4690 4.921515 CGTCCGAGAATACTTGTCAAAGAA 59.078 41.667 0.00 0.00 36.84 2.52
3664 4691 5.404366 CGTCCGAGAATACTTGTCAAAGAAA 59.596 40.000 0.00 0.00 36.84 2.52
3665 4692 6.090898 CGTCCGAGAATACTTGTCAAAGAAAT 59.909 38.462 0.00 0.00 36.84 2.17
3666 4693 7.237173 GTCCGAGAATACTTGTCAAAGAAATG 58.763 38.462 0.00 0.00 36.84 2.32
3667 4694 6.371548 TCCGAGAATACTTGTCAAAGAAATGG 59.628 38.462 0.00 0.00 36.84 3.16
3668 4695 6.371548 CCGAGAATACTTGTCAAAGAAATGGA 59.628 38.462 0.00 0.00 36.84 3.41
3669 4696 7.066284 CCGAGAATACTTGTCAAAGAAATGGAT 59.934 37.037 0.00 0.00 36.84 3.41
3670 4697 7.907045 CGAGAATACTTGTCAAAGAAATGGATG 59.093 37.037 0.00 0.00 36.84 3.51
3671 4698 8.641498 AGAATACTTGTCAAAGAAATGGATGT 57.359 30.769 0.00 0.00 36.84 3.06
3672 4699 9.739276 AGAATACTTGTCAAAGAAATGGATGTA 57.261 29.630 0.00 0.00 36.84 2.29
3675 4702 9.911788 ATACTTGTCAAAGAAATGGATGTATCT 57.088 29.630 0.00 0.00 36.84 1.98
3677 4704 9.388506 ACTTGTCAAAGAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 36.84 2.43
3678 4705 9.605275 CTTGTCAAAGAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 35.19 2.43
3679 4706 8.948631 TGTCAAAGAAATGGATGTATCTAGAC 57.051 34.615 0.00 0.00 32.32 2.59
3680 4707 7.706607 TGTCAAAGAAATGGATGTATCTAGACG 59.293 37.037 0.00 0.00 33.40 4.18
3681 4708 7.707035 GTCAAAGAAATGGATGTATCTAGACGT 59.293 37.037 0.00 0.00 0.00 4.34
3682 4709 8.909923 TCAAAGAAATGGATGTATCTAGACGTA 58.090 33.333 0.00 0.00 0.00 3.57
3683 4710 9.698309 CAAAGAAATGGATGTATCTAGACGTAT 57.302 33.333 0.00 0.00 0.00 3.06
3722 4749 8.352137 ACATCCATTTTCATACATTTCTGTGA 57.648 30.769 0.00 0.00 36.79 3.58
3723 4750 8.246180 ACATCCATTTTCATACATTTCTGTGAC 58.754 33.333 0.00 0.00 36.79 3.67
3724 4751 7.757941 TCCATTTTCATACATTTCTGTGACA 57.242 32.000 0.00 0.00 36.79 3.58
3725 4752 8.175925 TCCATTTTCATACATTTCTGTGACAA 57.824 30.769 0.00 0.00 36.79 3.18
3726 4753 8.298854 TCCATTTTCATACATTTCTGTGACAAG 58.701 33.333 0.00 0.00 36.79 3.16
3727 4754 8.084073 CCATTTTCATACATTTCTGTGACAAGT 58.916 33.333 0.00 0.00 36.79 3.16
3733 4760 8.946085 TCATACATTTCTGTGACAAGTAATTCC 58.054 33.333 0.00 0.00 36.79 3.01
3734 4761 6.241207 ACATTTCTGTGACAAGTAATTCCG 57.759 37.500 0.00 0.00 33.22 4.30
3735 4762 5.181245 ACATTTCTGTGACAAGTAATTCCGG 59.819 40.000 0.00 0.00 33.22 5.14
3736 4763 4.610605 TTCTGTGACAAGTAATTCCGGA 57.389 40.909 0.00 0.00 0.00 5.14
3737 4764 3.921677 TCTGTGACAAGTAATTCCGGAC 58.078 45.455 1.83 0.00 0.00 4.79
3738 4765 2.666508 CTGTGACAAGTAATTCCGGACG 59.333 50.000 1.83 0.00 0.00 4.79
3739 4766 1.997606 GTGACAAGTAATTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
3740 4767 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3741 4768 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3742 4769 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3743 4770 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3744 4771 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
3745 4772 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3844 5013 8.540388 ACTCATTTTGCTCCTTATGTAGTCTAA 58.460 33.333 0.00 0.00 0.00 2.10
4024 5206 6.213677 TGGTAGATGCGATGTATGTAACTTC 58.786 40.000 0.00 0.00 0.00 3.01
4216 5398 2.362077 GCTTTCAGAGGACAAAAAGCCA 59.638 45.455 7.30 0.00 44.86 4.75
4240 5422 1.675552 AAGGTTTGAACACTGACCCG 58.324 50.000 0.00 0.00 32.53 5.28
4249 5431 2.522436 ACTGACCCGTCCCGTCAA 60.522 61.111 0.00 0.00 39.66 3.18
4256 5438 1.066645 ACCCGTCCCGTCAATTACTTC 60.067 52.381 0.00 0.00 0.00 3.01
4598 5781 1.001815 CCCCGCCTAATTTTATGTGCG 60.002 52.381 0.00 0.00 41.51 5.34
4680 5863 2.486982 CTGATGCAGAGGTTGGTTTCAG 59.513 50.000 0.00 0.00 32.44 3.02
4688 5871 2.614057 GAGGTTGGTTTCAGTCTGTGTG 59.386 50.000 0.00 0.00 0.00 3.82
4696 5889 4.994852 GGTTTCAGTCTGTGTGCTACATTA 59.005 41.667 0.00 0.00 38.92 1.90
4801 5994 4.949856 AGCAAAATGTCCATACCACCTAAG 59.050 41.667 0.00 0.00 0.00 2.18
4853 6046 3.111098 GTTATACACGACCGATGTGGAC 58.889 50.000 0.00 0.00 41.64 4.02
4895 6088 3.404769 TGGGGGAGCTTATATACCAGAGA 59.595 47.826 0.00 0.00 0.00 3.10
4899 6092 5.081032 GGGAGCTTATATACCAGAGACACT 58.919 45.833 0.00 0.00 0.00 3.55
4975 6168 1.733402 CGAGCTAGGCACAGGAGGAG 61.733 65.000 0.00 0.00 0.00 3.69
5031 6225 0.326264 AGCTTTTCTGATGGCTCGGT 59.674 50.000 0.00 0.00 0.00 4.69
5037 6231 1.153489 CTGATGGCTCGGTGGTGAG 60.153 63.158 0.00 0.00 39.05 3.51
5054 6248 1.151668 GAGCGGCGCATAGATGATTT 58.848 50.000 35.02 8.92 0.00 2.17
5064 6258 4.440525 CGCATAGATGATTTGCCTGGTTTT 60.441 41.667 0.00 0.00 32.76 2.43
5065 6259 5.422145 GCATAGATGATTTGCCTGGTTTTT 58.578 37.500 0.00 0.00 0.00 1.94
5066 6260 5.292589 GCATAGATGATTTGCCTGGTTTTTG 59.707 40.000 0.00 0.00 0.00 2.44
5075 6269 0.397564 CCTGGTTTTTGGGCTGCAAT 59.602 50.000 0.50 0.00 0.00 3.56
5077 6271 1.874872 CTGGTTTTTGGGCTGCAATTG 59.125 47.619 0.00 0.00 0.00 2.32
5078 6272 1.237533 GGTTTTTGGGCTGCAATTGG 58.762 50.000 7.72 0.00 0.00 3.16
5079 6273 1.476652 GGTTTTTGGGCTGCAATTGGT 60.477 47.619 7.72 0.00 0.00 3.67
5080 6274 1.872952 GTTTTTGGGCTGCAATTGGTC 59.127 47.619 7.72 0.00 0.00 4.02
5081 6275 0.033228 TTTTGGGCTGCAATTGGTCG 59.967 50.000 7.72 0.00 0.00 4.79
5082 6276 1.814772 TTTGGGCTGCAATTGGTCGG 61.815 55.000 7.72 0.00 0.00 4.79
5083 6277 2.361104 GGGCTGCAATTGGTCGGA 60.361 61.111 7.72 0.00 0.00 4.55
5084 6278 2.409870 GGGCTGCAATTGGTCGGAG 61.410 63.158 7.72 0.00 0.00 4.63
5085 6279 1.377202 GGCTGCAATTGGTCGGAGA 60.377 57.895 7.72 0.00 0.00 3.71
5086 6280 0.749454 GGCTGCAATTGGTCGGAGAT 60.749 55.000 7.72 0.00 40.67 2.75
5087 6281 1.098050 GCTGCAATTGGTCGGAGATT 58.902 50.000 7.72 0.00 40.67 2.40
5088 6282 1.202222 GCTGCAATTGGTCGGAGATTG 60.202 52.381 7.72 4.98 40.67 2.67
5089 6283 1.402968 CTGCAATTGGTCGGAGATTGG 59.597 52.381 7.72 0.00 40.67 3.16
5090 6284 1.004161 TGCAATTGGTCGGAGATTGGA 59.996 47.619 7.72 5.34 40.67 3.53
5091 6285 1.672881 GCAATTGGTCGGAGATTGGAG 59.327 52.381 7.72 0.00 40.67 3.86
5092 6286 2.680805 GCAATTGGTCGGAGATTGGAGA 60.681 50.000 7.72 0.00 40.67 3.71
5093 6287 3.609853 CAATTGGTCGGAGATTGGAGAA 58.390 45.455 0.00 0.00 40.67 2.87
5094 6288 2.762535 TTGGTCGGAGATTGGAGAAC 57.237 50.000 0.00 0.00 40.67 3.01
5095 6289 0.530744 TGGTCGGAGATTGGAGAACG 59.469 55.000 0.00 0.00 40.67 3.95
5096 6290 0.815734 GGTCGGAGATTGGAGAACGA 59.184 55.000 0.00 0.00 40.67 3.85
5097 6291 1.202313 GGTCGGAGATTGGAGAACGAG 60.202 57.143 0.00 0.00 40.67 4.18
5098 6292 1.103803 TCGGAGATTGGAGAACGAGG 58.896 55.000 0.00 0.00 0.00 4.63
5099 6293 0.103208 CGGAGATTGGAGAACGAGGG 59.897 60.000 0.00 0.00 0.00 4.30
5100 6294 0.466124 GGAGATTGGAGAACGAGGGG 59.534 60.000 0.00 0.00 0.00 4.79
5101 6295 0.466124 GAGATTGGAGAACGAGGGGG 59.534 60.000 0.00 0.00 0.00 5.40
5102 6296 0.042731 AGATTGGAGAACGAGGGGGA 59.957 55.000 0.00 0.00 0.00 4.81
5103 6297 1.132500 GATTGGAGAACGAGGGGGAT 58.868 55.000 0.00 0.00 0.00 3.85
5104 6298 1.490910 GATTGGAGAACGAGGGGGATT 59.509 52.381 0.00 0.00 0.00 3.01
5105 6299 0.618458 TTGGAGAACGAGGGGGATTG 59.382 55.000 0.00 0.00 0.00 2.67
5106 6300 1.271840 TGGAGAACGAGGGGGATTGG 61.272 60.000 0.00 0.00 0.00 3.16
5107 6301 0.981277 GGAGAACGAGGGGGATTGGA 60.981 60.000 0.00 0.00 0.00 3.53
5108 6302 0.178301 GAGAACGAGGGGGATTGGAC 59.822 60.000 0.00 0.00 0.00 4.02
5117 6311 1.297364 GGGATTGGACGGTCCGAAA 59.703 57.895 20.66 11.47 40.17 3.46
5147 6341 2.975489 TCTGGAAGAAACTGAAGGAGCT 59.025 45.455 0.00 0.00 42.31 4.09
5209 6404 5.384336 TGTGTGAAATTGATGGGAAGAAGA 58.616 37.500 0.00 0.00 0.00 2.87
5216 6411 7.452501 TGAAATTGATGGGAAGAAGAAGAATGT 59.547 33.333 0.00 0.00 0.00 2.71
5229 6424 2.586079 AATGTCGGCGAGCGATGG 60.586 61.111 11.20 0.00 0.00 3.51
5239 6434 2.228343 GGCGAGCGATGGTATAGTAACT 59.772 50.000 0.00 0.00 0.00 2.24
5244 6439 5.368256 AGCGATGGTATAGTAACTAACCG 57.632 43.478 0.00 0.00 34.60 4.44
5292 6487 8.650490 AGATTCCAAAATTGTTATTCCTGTGTT 58.350 29.630 0.00 0.00 0.00 3.32
5294 6489 8.430801 TTCCAAAATTGTTATTCCTGTGTTTG 57.569 30.769 0.00 0.00 0.00 2.93
5295 6490 7.786030 TCCAAAATTGTTATTCCTGTGTTTGA 58.214 30.769 0.00 0.00 0.00 2.69
5296 6491 8.428063 TCCAAAATTGTTATTCCTGTGTTTGAT 58.572 29.630 0.00 0.00 0.00 2.57
5297 6492 9.703892 CCAAAATTGTTATTCCTGTGTTTGATA 57.296 29.630 0.00 0.00 0.00 2.15
5309 6504 8.196802 TCCTGTGTTTGATAAACTATTCATCG 57.803 34.615 6.07 0.00 41.90 3.84
5310 6505 7.279981 TCCTGTGTTTGATAAACTATTCATCGG 59.720 37.037 6.07 0.00 41.90 4.18
5311 6506 6.781138 TGTGTTTGATAAACTATTCATCGGC 58.219 36.000 6.07 0.00 41.90 5.54
5312 6507 6.372937 TGTGTTTGATAAACTATTCATCGGCA 59.627 34.615 6.07 0.00 41.90 5.69
5313 6508 6.687105 GTGTTTGATAAACTATTCATCGGCAC 59.313 38.462 6.07 0.00 41.90 5.01
5314 6509 6.183360 TGTTTGATAAACTATTCATCGGCACC 60.183 38.462 6.07 0.00 41.90 5.01
5315 6510 5.029807 TGATAAACTATTCATCGGCACCA 57.970 39.130 0.00 0.00 0.00 4.17
5316 6511 5.432645 TGATAAACTATTCATCGGCACCAA 58.567 37.500 0.00 0.00 0.00 3.67
5317 6512 5.295787 TGATAAACTATTCATCGGCACCAAC 59.704 40.000 0.00 0.00 0.00 3.77
5318 6513 2.779755 ACTATTCATCGGCACCAACA 57.220 45.000 0.00 0.00 0.00 3.33
5319 6514 3.066291 ACTATTCATCGGCACCAACAA 57.934 42.857 0.00 0.00 0.00 2.83
5320 6515 3.620488 ACTATTCATCGGCACCAACAAT 58.380 40.909 0.00 0.00 0.00 2.71
5321 6516 4.776349 ACTATTCATCGGCACCAACAATA 58.224 39.130 0.00 0.00 0.00 1.90
5322 6517 5.189928 ACTATTCATCGGCACCAACAATAA 58.810 37.500 0.00 0.00 0.00 1.40
5323 6518 4.637483 ATTCATCGGCACCAACAATAAG 57.363 40.909 0.00 0.00 0.00 1.73
5324 6519 1.742831 TCATCGGCACCAACAATAAGC 59.257 47.619 0.00 0.00 0.00 3.09
5325 6520 1.102978 ATCGGCACCAACAATAAGCC 58.897 50.000 0.00 0.00 41.86 4.35
5327 6522 2.562125 GGCACCAACAATAAGCCGA 58.438 52.632 0.00 0.00 35.42 5.54
5328 6523 0.170339 GGCACCAACAATAAGCCGAC 59.830 55.000 0.00 0.00 35.42 4.79
5329 6524 0.179200 GCACCAACAATAAGCCGACG 60.179 55.000 0.00 0.00 0.00 5.12
5330 6525 1.153353 CACCAACAATAAGCCGACGT 58.847 50.000 0.00 0.00 0.00 4.34
5331 6526 2.339418 CACCAACAATAAGCCGACGTA 58.661 47.619 0.00 0.00 0.00 3.57
5332 6527 2.347452 CACCAACAATAAGCCGACGTAG 59.653 50.000 0.00 0.00 0.00 3.51
5333 6528 1.931172 CCAACAATAAGCCGACGTAGG 59.069 52.381 10.78 10.78 0.00 3.18
5341 6536 3.851955 CCGACGTAGGCCCTACAT 58.148 61.111 20.54 5.28 36.83 2.29
5342 6537 2.121645 CCGACGTAGGCCCTACATT 58.878 57.895 20.54 6.72 36.83 2.71
5343 6538 0.462789 CCGACGTAGGCCCTACATTT 59.537 55.000 20.54 4.13 36.83 2.32
5344 6539 1.134610 CCGACGTAGGCCCTACATTTT 60.135 52.381 20.54 1.59 36.83 1.82
5345 6540 1.931172 CGACGTAGGCCCTACATTTTG 59.069 52.381 20.54 6.47 36.83 2.44
5346 6541 2.675889 CGACGTAGGCCCTACATTTTGT 60.676 50.000 20.54 9.64 36.83 2.83
5347 6542 3.340928 GACGTAGGCCCTACATTTTGTT 58.659 45.455 20.54 0.00 36.83 2.83
5348 6543 3.340928 ACGTAGGCCCTACATTTTGTTC 58.659 45.455 20.54 0.00 36.83 3.18
5349 6544 3.244630 ACGTAGGCCCTACATTTTGTTCA 60.245 43.478 20.54 0.00 36.83 3.18
5350 6545 3.945285 CGTAGGCCCTACATTTTGTTCAT 59.055 43.478 20.54 0.00 36.83 2.57
5351 6546 4.201910 CGTAGGCCCTACATTTTGTTCATG 60.202 45.833 20.54 0.00 36.83 3.07
5352 6547 3.778265 AGGCCCTACATTTTGTTCATGT 58.222 40.909 0.00 0.00 38.45 3.21
5353 6548 3.511146 AGGCCCTACATTTTGTTCATGTG 59.489 43.478 0.00 0.00 35.57 3.21
5354 6549 3.253230 GCCCTACATTTTGTTCATGTGC 58.747 45.455 0.00 0.00 35.57 4.57
5355 6550 3.056607 GCCCTACATTTTGTTCATGTGCT 60.057 43.478 0.00 0.00 35.57 4.40
5356 6551 4.737054 CCCTACATTTTGTTCATGTGCTC 58.263 43.478 0.00 0.00 35.57 4.26
5357 6552 4.406069 CCTACATTTTGTTCATGTGCTCG 58.594 43.478 0.00 0.00 35.57 5.03
5358 6553 4.154015 CCTACATTTTGTTCATGTGCTCGA 59.846 41.667 0.00 0.00 35.57 4.04
5359 6554 4.151258 ACATTTTGTTCATGTGCTCGAG 57.849 40.909 8.45 8.45 33.42 4.04
5360 6555 3.814842 ACATTTTGTTCATGTGCTCGAGA 59.185 39.130 18.75 0.00 33.42 4.04
5361 6556 4.275689 ACATTTTGTTCATGTGCTCGAGAA 59.724 37.500 18.75 1.15 33.42 2.87
5362 6557 3.878086 TTTGTTCATGTGCTCGAGAAC 57.122 42.857 17.28 17.28 40.45 3.01
5363 6558 1.795768 TGTTCATGTGCTCGAGAACC 58.204 50.000 21.10 5.46 39.57 3.62
5364 6559 1.344438 TGTTCATGTGCTCGAGAACCT 59.656 47.619 21.10 8.43 39.57 3.50
5365 6560 1.728971 GTTCATGTGCTCGAGAACCTG 59.271 52.381 21.10 20.38 35.52 4.00
5366 6561 0.969149 TCATGTGCTCGAGAACCTGT 59.031 50.000 23.39 7.83 0.00 4.00
5367 6562 1.073964 CATGTGCTCGAGAACCTGTG 58.926 55.000 21.10 12.81 0.00 3.66
5368 6563 0.036952 ATGTGCTCGAGAACCTGTGG 60.037 55.000 21.10 0.00 0.00 4.17
5369 6564 1.374758 GTGCTCGAGAACCTGTGGG 60.375 63.158 18.75 0.00 38.88 4.61
5370 6565 1.533033 TGCTCGAGAACCTGTGGGA 60.533 57.895 18.75 0.00 36.25 4.37
5371 6566 0.904865 TGCTCGAGAACCTGTGGGAT 60.905 55.000 18.75 0.00 36.25 3.85
5372 6567 0.460987 GCTCGAGAACCTGTGGGATG 60.461 60.000 18.75 0.00 36.25 3.51
5373 6568 0.460987 CTCGAGAACCTGTGGGATGC 60.461 60.000 6.58 0.00 36.25 3.91
5374 6569 1.450312 CGAGAACCTGTGGGATGCC 60.450 63.158 0.00 0.00 36.25 4.40
5375 6570 1.450312 GAGAACCTGTGGGATGCCG 60.450 63.158 0.00 0.00 36.25 5.69
5376 6571 3.134127 GAACCTGTGGGATGCCGC 61.134 66.667 10.32 10.32 36.25 6.53
5377 6572 4.740822 AACCTGTGGGATGCCGCC 62.741 66.667 14.86 0.00 36.25 6.13
5379 6574 4.431131 CCTGTGGGATGCCGCCTT 62.431 66.667 14.86 0.00 33.58 4.35
5380 6575 2.589540 CTGTGGGATGCCGCCTTA 59.410 61.111 14.86 0.00 0.00 2.69
5381 6576 1.149174 CTGTGGGATGCCGCCTTAT 59.851 57.895 14.86 0.00 0.00 1.73
5382 6577 0.396435 CTGTGGGATGCCGCCTTATA 59.604 55.000 14.86 0.00 0.00 0.98
5383 6578 0.107831 TGTGGGATGCCGCCTTATAC 59.892 55.000 14.86 0.00 0.00 1.47
5384 6579 0.107831 GTGGGATGCCGCCTTATACA 59.892 55.000 5.31 0.00 0.00 2.29
5385 6580 1.064003 TGGGATGCCGCCTTATACAT 58.936 50.000 0.00 0.00 0.00 2.29
5386 6581 1.003118 TGGGATGCCGCCTTATACATC 59.997 52.381 0.00 0.00 38.53 3.06
5387 6582 1.279271 GGGATGCCGCCTTATACATCT 59.721 52.381 0.00 0.00 39.10 2.90
5388 6583 2.350522 GGATGCCGCCTTATACATCTG 58.649 52.381 0.00 0.00 39.10 2.90
5389 6584 1.734465 GATGCCGCCTTATACATCTGC 59.266 52.381 0.00 0.00 36.75 4.26
5390 6585 0.250295 TGCCGCCTTATACATCTGCC 60.250 55.000 0.00 0.00 0.00 4.85
5391 6586 1.291877 GCCGCCTTATACATCTGCCG 61.292 60.000 0.00 0.00 0.00 5.69
5392 6587 1.291877 CCGCCTTATACATCTGCCGC 61.292 60.000 0.00 0.00 0.00 6.53
5393 6588 0.319900 CGCCTTATACATCTGCCGCT 60.320 55.000 0.00 0.00 0.00 5.52
5394 6589 1.873903 CGCCTTATACATCTGCCGCTT 60.874 52.381 0.00 0.00 0.00 4.68
5395 6590 2.222027 GCCTTATACATCTGCCGCTTT 58.778 47.619 0.00 0.00 0.00 3.51
5396 6591 2.224314 GCCTTATACATCTGCCGCTTTC 59.776 50.000 0.00 0.00 0.00 2.62
5397 6592 3.733337 CCTTATACATCTGCCGCTTTCT 58.267 45.455 0.00 0.00 0.00 2.52
5398 6593 3.743396 CCTTATACATCTGCCGCTTTCTC 59.257 47.826 0.00 0.00 0.00 2.87
5399 6594 2.246719 ATACATCTGCCGCTTTCTCC 57.753 50.000 0.00 0.00 0.00 3.71
5400 6595 0.178068 TACATCTGCCGCTTTCTCCC 59.822 55.000 0.00 0.00 0.00 4.30
5401 6596 1.222936 CATCTGCCGCTTTCTCCCT 59.777 57.895 0.00 0.00 0.00 4.20
5402 6597 0.393537 CATCTGCCGCTTTCTCCCTT 60.394 55.000 0.00 0.00 0.00 3.95
5403 6598 0.107459 ATCTGCCGCTTTCTCCCTTC 60.107 55.000 0.00 0.00 0.00 3.46
5404 6599 1.194781 TCTGCCGCTTTCTCCCTTCT 61.195 55.000 0.00 0.00 0.00 2.85
5405 6600 0.537188 CTGCCGCTTTCTCCCTTCTA 59.463 55.000 0.00 0.00 0.00 2.10
5406 6601 0.249398 TGCCGCTTTCTCCCTTCTAC 59.751 55.000 0.00 0.00 0.00 2.59
5407 6602 0.537653 GCCGCTTTCTCCCTTCTACT 59.462 55.000 0.00 0.00 0.00 2.57
5408 6603 1.471851 GCCGCTTTCTCCCTTCTACTC 60.472 57.143 0.00 0.00 0.00 2.59
5409 6604 1.137282 CCGCTTTCTCCCTTCTACTCC 59.863 57.143 0.00 0.00 0.00 3.85
5410 6605 1.137282 CGCTTTCTCCCTTCTACTCCC 59.863 57.143 0.00 0.00 0.00 4.30
5411 6606 2.473070 GCTTTCTCCCTTCTACTCCCT 58.527 52.381 0.00 0.00 0.00 4.20
5412 6607 2.432874 GCTTTCTCCCTTCTACTCCCTC 59.567 54.545 0.00 0.00 0.00 4.30
5413 6608 2.850695 TTCTCCCTTCTACTCCCTCC 57.149 55.000 0.00 0.00 0.00 4.30
5414 6609 0.551879 TCTCCCTTCTACTCCCTCCG 59.448 60.000 0.00 0.00 0.00 4.63
5415 6610 0.259356 CTCCCTTCTACTCCCTCCGT 59.741 60.000 0.00 0.00 0.00 4.69
5416 6611 0.708802 TCCCTTCTACTCCCTCCGTT 59.291 55.000 0.00 0.00 0.00 4.44
5417 6612 1.078324 TCCCTTCTACTCCCTCCGTTT 59.922 52.381 0.00 0.00 0.00 3.60
5418 6613 1.481363 CCCTTCTACTCCCTCCGTTTC 59.519 57.143 0.00 0.00 0.00 2.78
5419 6614 2.458620 CCTTCTACTCCCTCCGTTTCT 58.541 52.381 0.00 0.00 0.00 2.52
5420 6615 3.626729 CCCTTCTACTCCCTCCGTTTCTA 60.627 52.174 0.00 0.00 0.00 2.10
5421 6616 4.021916 CCTTCTACTCCCTCCGTTTCTAA 58.978 47.826 0.00 0.00 0.00 2.10
5422 6617 4.465305 CCTTCTACTCCCTCCGTTTCTAAA 59.535 45.833 0.00 0.00 0.00 1.85
5423 6618 5.128991 CCTTCTACTCCCTCCGTTTCTAAAT 59.871 44.000 0.00 0.00 0.00 1.40
5424 6619 6.323225 CCTTCTACTCCCTCCGTTTCTAAATA 59.677 42.308 0.00 0.00 0.00 1.40
5425 6620 7.015389 CCTTCTACTCCCTCCGTTTCTAAATAT 59.985 40.741 0.00 0.00 0.00 1.28
5426 6621 9.075678 CTTCTACTCCCTCCGTTTCTAAATATA 57.924 37.037 0.00 0.00 0.00 0.86
5427 6622 9.425248 TTCTACTCCCTCCGTTTCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
5428 6623 9.597681 TCTACTCCCTCCGTTTCTAAATATAAT 57.402 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.106351 AATGCAAGCACCGGTGTCAA 61.106 50.000 33.92 16.73 0.00 3.18
1 2 0.250510 TAATGCAAGCACCGGTGTCA 60.251 50.000 33.92 24.91 0.00 3.58
2 3 1.094785 ATAATGCAAGCACCGGTGTC 58.905 50.000 33.92 25.30 0.00 3.67
3 4 1.544724 AATAATGCAAGCACCGGTGT 58.455 45.000 33.92 18.91 0.00 4.16
4 5 2.942376 TCTAATAATGCAAGCACCGGTG 59.058 45.455 30.66 30.66 0.00 4.94
6 7 4.836125 AATCTAATAATGCAAGCACCGG 57.164 40.909 0.00 0.00 0.00 5.28
7 8 8.801715 AAATAAATCTAATAATGCAAGCACCG 57.198 30.769 0.00 0.00 0.00 4.94
8 9 9.748708 TGAAATAAATCTAATAATGCAAGCACC 57.251 29.630 0.00 0.00 0.00 5.01
23 24 9.865321 CATCACCAAAACATCTGAAATAAATCT 57.135 29.630 0.00 0.00 0.00 2.40
24 25 9.643693 ACATCACCAAAACATCTGAAATAAATC 57.356 29.630 0.00 0.00 0.00 2.17
25 26 9.426837 CACATCACCAAAACATCTGAAATAAAT 57.573 29.630 0.00 0.00 0.00 1.40
26 27 7.384660 GCACATCACCAAAACATCTGAAATAAA 59.615 33.333 0.00 0.00 0.00 1.40
27 28 6.867816 GCACATCACCAAAACATCTGAAATAA 59.132 34.615 0.00 0.00 0.00 1.40
28 29 6.015603 TGCACATCACCAAAACATCTGAAATA 60.016 34.615 0.00 0.00 0.00 1.40
29 30 5.221481 TGCACATCACCAAAACATCTGAAAT 60.221 36.000 0.00 0.00 0.00 2.17
30 31 4.099113 TGCACATCACCAAAACATCTGAAA 59.901 37.500 0.00 0.00 0.00 2.69
31 32 3.635836 TGCACATCACCAAAACATCTGAA 59.364 39.130 0.00 0.00 0.00 3.02
32 33 3.220940 TGCACATCACCAAAACATCTGA 58.779 40.909 0.00 0.00 0.00 3.27
33 34 3.646611 TGCACATCACCAAAACATCTG 57.353 42.857 0.00 0.00 0.00 2.90
34 35 4.877378 AATGCACATCACCAAAACATCT 57.123 36.364 0.00 0.00 0.00 2.90
35 36 6.089820 CACTAAATGCACATCACCAAAACATC 59.910 38.462 0.00 0.00 0.00 3.06
36 37 5.927689 CACTAAATGCACATCACCAAAACAT 59.072 36.000 0.00 0.00 0.00 2.71
37 38 5.288015 CACTAAATGCACATCACCAAAACA 58.712 37.500 0.00 0.00 0.00 2.83
38 39 4.685628 CCACTAAATGCACATCACCAAAAC 59.314 41.667 0.00 0.00 0.00 2.43
39 40 4.262377 CCCACTAAATGCACATCACCAAAA 60.262 41.667 0.00 0.00 0.00 2.44
40 41 3.257873 CCCACTAAATGCACATCACCAAA 59.742 43.478 0.00 0.00 0.00 3.28
41 42 2.824936 CCCACTAAATGCACATCACCAA 59.175 45.455 0.00 0.00 0.00 3.67
42 43 2.040947 TCCCACTAAATGCACATCACCA 59.959 45.455 0.00 0.00 0.00 4.17
43 44 2.684881 CTCCCACTAAATGCACATCACC 59.315 50.000 0.00 0.00 0.00 4.02
44 45 3.609853 TCTCCCACTAAATGCACATCAC 58.390 45.455 0.00 0.00 0.00 3.06
45 46 3.998913 TCTCCCACTAAATGCACATCA 57.001 42.857 0.00 0.00 0.00 3.07
46 47 5.126061 ACATTTCTCCCACTAAATGCACATC 59.874 40.000 7.50 0.00 43.65 3.06
47 48 5.018809 ACATTTCTCCCACTAAATGCACAT 58.981 37.500 7.50 0.00 43.65 3.21
48 49 4.406456 ACATTTCTCCCACTAAATGCACA 58.594 39.130 7.50 0.00 43.65 4.57
112 114 3.384789 AGACTAAGCGGCACATCATCTTA 59.615 43.478 1.45 0.00 0.00 2.10
117 119 1.135139 GAGAGACTAAGCGGCACATCA 59.865 52.381 1.45 0.00 0.00 3.07
135 137 1.115467 ACCCTATGAGCACCTTCGAG 58.885 55.000 0.00 0.00 0.00 4.04
138 140 4.443621 GTCTTAACCCTATGAGCACCTTC 58.556 47.826 0.00 0.00 0.00 3.46
141 143 2.167900 ACGTCTTAACCCTATGAGCACC 59.832 50.000 0.00 0.00 0.00 5.01
146 148 3.119245 GCACTCACGTCTTAACCCTATGA 60.119 47.826 0.00 0.00 0.00 2.15
156 158 0.880278 AACGCATGCACTCACGTCTT 60.880 50.000 19.57 0.00 37.87 3.01
160 162 0.998669 TATGAACGCATGCACTCACG 59.001 50.000 19.57 2.13 35.94 4.35
173 175 5.966503 CGCTTATATACTCGCCTCTATGAAC 59.033 44.000 0.00 0.00 0.00 3.18
181 183 2.621998 ACACACGCTTATATACTCGCCT 59.378 45.455 3.50 0.00 0.00 5.52
189 191 6.644248 TGGTATAGACACACACGCTTATAT 57.356 37.500 0.00 0.00 0.00 0.86
190 192 6.040054 ACATGGTATAGACACACACGCTTATA 59.960 38.462 0.00 0.00 0.00 0.98
196 198 4.490743 TCAACATGGTATAGACACACACG 58.509 43.478 0.00 0.00 0.00 4.49
199 201 7.667043 TTTCTTCAACATGGTATAGACACAC 57.333 36.000 0.00 0.00 0.00 3.82
224 226 8.515414 GTCATTTGAGATACTTAGGTGCTTTTT 58.485 33.333 0.00 0.00 0.00 1.94
225 227 7.665559 TGTCATTTGAGATACTTAGGTGCTTTT 59.334 33.333 0.00 0.00 0.00 2.27
226 228 7.119846 GTGTCATTTGAGATACTTAGGTGCTTT 59.880 37.037 0.00 0.00 0.00 3.51
227 229 6.595716 GTGTCATTTGAGATACTTAGGTGCTT 59.404 38.462 0.00 0.00 0.00 3.91
228 230 6.109359 GTGTCATTTGAGATACTTAGGTGCT 58.891 40.000 0.00 0.00 0.00 4.40
229 231 5.005779 CGTGTCATTTGAGATACTTAGGTGC 59.994 44.000 0.00 0.00 0.00 5.01
230 232 5.005779 GCGTGTCATTTGAGATACTTAGGTG 59.994 44.000 0.00 0.00 0.00 4.00
231 233 5.109903 GCGTGTCATTTGAGATACTTAGGT 58.890 41.667 0.00 0.00 0.00 3.08
232 234 5.109210 TGCGTGTCATTTGAGATACTTAGG 58.891 41.667 0.00 0.00 0.00 2.69
233 235 5.233050 CCTGCGTGTCATTTGAGATACTTAG 59.767 44.000 0.00 0.00 0.00 2.18
341 344 4.394712 GTGAGCTGGGTCCCACCG 62.395 72.222 6.47 0.00 39.83 4.94
348 351 0.550914 TGGAAAACTGTGAGCTGGGT 59.449 50.000 0.00 0.00 0.00 4.51
429 767 8.344098 CGAAGTACTAGTAGGAGTATTTTGGAG 58.656 40.741 1.87 0.00 33.44 3.86
437 775 6.015856 ACGATAGCGAAGTACTAGTAGGAGTA 60.016 42.308 7.69 0.00 41.64 2.59
438 776 5.221422 ACGATAGCGAAGTACTAGTAGGAGT 60.221 44.000 7.69 0.00 41.64 3.85
439 777 5.118971 CACGATAGCGAAGTACTAGTAGGAG 59.881 48.000 7.69 0.00 41.64 3.69
440 778 4.987285 CACGATAGCGAAGTACTAGTAGGA 59.013 45.833 7.69 0.00 41.64 2.94
441 779 4.377226 GCACGATAGCGAAGTACTAGTAGG 60.377 50.000 7.69 0.00 41.64 3.18
442 780 4.448395 AGCACGATAGCGAAGTACTAGTAG 59.552 45.833 7.69 0.00 41.64 2.57
443 781 4.375272 AGCACGATAGCGAAGTACTAGTA 58.625 43.478 7.69 0.00 41.64 1.82
444 782 3.204526 AGCACGATAGCGAAGTACTAGT 58.795 45.455 7.69 0.00 41.64 2.57
445 783 3.662195 CGAGCACGATAGCGAAGTACTAG 60.662 52.174 7.69 0.00 42.66 2.57
446 784 2.220363 CGAGCACGATAGCGAAGTACTA 59.780 50.000 7.69 0.00 42.66 1.82
447 785 1.003759 CGAGCACGATAGCGAAGTACT 60.004 52.381 7.69 0.00 42.66 2.73
448 786 1.386961 CGAGCACGATAGCGAAGTAC 58.613 55.000 7.69 0.00 42.66 2.73
482 820 2.094100 TGGGGTTGGATTTTTCTGCA 57.906 45.000 0.00 0.00 0.00 4.41
484 822 2.703007 TGGTTGGGGTTGGATTTTTCTG 59.297 45.455 0.00 0.00 0.00 3.02
516 854 2.025898 TCAGTTTCGGTTTGGGTTTCC 58.974 47.619 0.00 0.00 0.00 3.13
538 881 1.003718 GGTTCGACCCACCCTCTTG 60.004 63.158 0.00 0.00 30.04 3.02
539 882 1.460689 TGGTTCGACCCACCCTCTT 60.461 57.895 0.00 0.00 37.50 2.85
540 883 1.913762 CTGGTTCGACCCACCCTCT 60.914 63.158 0.00 0.00 37.50 3.69
541 884 2.663196 CTGGTTCGACCCACCCTC 59.337 66.667 0.00 0.00 37.50 4.30
544 887 2.358737 CTGCTGGTTCGACCCACC 60.359 66.667 0.00 0.00 37.50 4.61
581 924 1.539929 GGAATGGATCGGTCTGCTCTG 60.540 57.143 0.00 0.00 0.00 3.35
996 1802 0.456221 AGTACGAGTCGCCCATCTTG 59.544 55.000 13.59 0.00 0.00 3.02
1360 2167 3.440127 ACAGAAGAGGAGGAAAGAGGAG 58.560 50.000 0.00 0.00 0.00 3.69
1364 2171 2.541466 GGGACAGAAGAGGAGGAAAGA 58.459 52.381 0.00 0.00 0.00 2.52
1366 2173 1.132527 TGGGGACAGAAGAGGAGGAAA 60.133 52.381 0.00 0.00 35.01 3.13
1392 2199 0.094730 GAACACATACAAGACGGCGC 59.905 55.000 6.90 0.00 0.00 6.53
1402 2211 3.364889 TGGATCGGATCGAACACATAC 57.635 47.619 11.62 0.00 39.99 2.39
1439 2252 8.891671 AACTAGTACTAGTACTACATCTGAGC 57.108 38.462 30.50 4.93 44.96 4.26
1468 2285 0.886490 AGCGATTGATTGATCCCGCC 60.886 55.000 14.36 3.35 38.74 6.13
1517 2334 5.867903 AAATCCGCCCATCAAATCAAATA 57.132 34.783 0.00 0.00 0.00 1.40
1548 2369 4.556912 CAGAGATAAATCTATCACGCTCGC 59.443 45.833 0.00 0.00 37.05 5.03
1553 2374 4.169508 CCCGCAGAGATAAATCTATCACG 58.830 47.826 0.00 0.00 37.05 4.35
1598 2419 3.000322 GCAATCACACGTTCCGAATCTAG 60.000 47.826 0.00 0.00 0.00 2.43
1656 2478 5.129485 GCTGCCCATACTACATATACAGGAT 59.871 44.000 0.00 0.00 0.00 3.24
1657 2479 4.466370 GCTGCCCATACTACATATACAGGA 59.534 45.833 0.00 0.00 0.00 3.86
1658 2480 4.678044 CGCTGCCCATACTACATATACAGG 60.678 50.000 0.00 0.00 0.00 4.00
1659 2481 4.157840 TCGCTGCCCATACTACATATACAG 59.842 45.833 0.00 0.00 0.00 2.74
1661 2483 4.713824 TCGCTGCCCATACTACATATAC 57.286 45.455 0.00 0.00 0.00 1.47
1662 2484 5.201243 AGATCGCTGCCCATACTACATATA 58.799 41.667 0.00 0.00 0.00 0.86
1663 2485 4.026744 AGATCGCTGCCCATACTACATAT 58.973 43.478 0.00 0.00 0.00 1.78
1664 2486 3.431415 AGATCGCTGCCCATACTACATA 58.569 45.455 0.00 0.00 0.00 2.29
1665 2487 2.251818 AGATCGCTGCCCATACTACAT 58.748 47.619 0.00 0.00 0.00 2.29
1666 2488 1.704641 AGATCGCTGCCCATACTACA 58.295 50.000 0.00 0.00 0.00 2.74
1667 2489 2.821991 AAGATCGCTGCCCATACTAC 57.178 50.000 0.00 0.00 0.00 2.73
1668 2490 3.195610 CCATAAGATCGCTGCCCATACTA 59.804 47.826 0.00 0.00 0.00 1.82
1677 2499 2.289072 CCACCTACCCATAAGATCGCTG 60.289 54.545 0.00 0.00 0.00 5.18
1887 2711 3.384668 CCGATGTTCTGTAGGTGCATAG 58.615 50.000 0.00 0.00 0.00 2.23
1888 2712 2.483013 GCCGATGTTCTGTAGGTGCATA 60.483 50.000 0.00 0.00 0.00 3.14
1889 2713 1.743772 GCCGATGTTCTGTAGGTGCAT 60.744 52.381 0.00 0.00 0.00 3.96
1890 2714 0.391130 GCCGATGTTCTGTAGGTGCA 60.391 55.000 0.00 0.00 0.00 4.57
1891 2715 1.421410 CGCCGATGTTCTGTAGGTGC 61.421 60.000 0.00 0.00 0.00 5.01
1892 2716 0.172578 TCGCCGATGTTCTGTAGGTG 59.827 55.000 0.00 0.00 0.00 4.00
1893 2717 0.892755 TTCGCCGATGTTCTGTAGGT 59.107 50.000 0.00 0.00 0.00 3.08
1894 2718 1.135083 AGTTCGCCGATGTTCTGTAGG 60.135 52.381 0.00 0.00 0.00 3.18
1895 2719 1.920574 CAGTTCGCCGATGTTCTGTAG 59.079 52.381 0.00 0.00 0.00 2.74
1896 2720 1.271379 ACAGTTCGCCGATGTTCTGTA 59.729 47.619 11.05 0.00 34.95 2.74
1897 2721 0.033504 ACAGTTCGCCGATGTTCTGT 59.966 50.000 8.24 8.24 0.00 3.41
1898 2722 1.136252 CAACAGTTCGCCGATGTTCTG 60.136 52.381 3.26 5.59 35.04 3.02
1899 2723 1.148310 CAACAGTTCGCCGATGTTCT 58.852 50.000 3.26 0.00 35.04 3.01
1900 2724 0.165944 CCAACAGTTCGCCGATGTTC 59.834 55.000 3.26 0.00 35.04 3.18
1901 2725 0.534203 ACCAACAGTTCGCCGATGTT 60.534 50.000 0.46 0.46 37.64 2.71
1902 2726 1.070786 ACCAACAGTTCGCCGATGT 59.929 52.632 0.00 0.00 0.00 3.06
1906 2730 4.025401 GCCACCAACAGTTCGCCG 62.025 66.667 0.00 0.00 0.00 6.46
1923 2747 5.717119 ACTACGAGTAGGTGTTAAATGGTG 58.283 41.667 14.00 0.00 37.49 4.17
1950 2931 4.733165 AGTGGCTAATATGCATGGTTGAT 58.267 39.130 10.16 0.00 34.04 2.57
1952 2933 4.500205 CCAAGTGGCTAATATGCATGGTTG 60.500 45.833 10.16 0.00 34.04 3.77
1955 2936 2.559668 CCCAAGTGGCTAATATGCATGG 59.440 50.000 10.16 0.00 34.04 3.66
1972 2956 1.603455 GCTGTTGCTAGGCACCCAA 60.603 57.895 0.00 0.00 38.71 4.12
1974 2958 1.589716 CTTGCTGTTGCTAGGCACCC 61.590 60.000 0.00 0.00 38.71 4.61
2000 2992 5.285651 TGTTTAAGTTTGCCATGTTGTAGC 58.714 37.500 0.00 0.00 0.00 3.58
2019 3011 5.510179 CCTTGGCAGTTCATCAATTCTGTTT 60.510 40.000 0.00 0.00 0.00 2.83
2022 3014 3.760151 TCCTTGGCAGTTCATCAATTCTG 59.240 43.478 0.00 0.00 0.00 3.02
2023 3015 4.038271 TCCTTGGCAGTTCATCAATTCT 57.962 40.909 0.00 0.00 0.00 2.40
2024 3016 4.202090 GGATCCTTGGCAGTTCATCAATTC 60.202 45.833 3.84 0.00 0.00 2.17
2025 3017 3.703052 GGATCCTTGGCAGTTCATCAATT 59.297 43.478 3.84 0.00 0.00 2.32
2057 3052 2.121291 TCACCATCGCAAATGCCTTA 57.879 45.000 0.00 0.00 37.91 2.69
2072 3067 5.422650 ACTGGTAGAAGAGGAAACTATCACC 59.577 44.000 0.00 0.00 44.43 4.02
2111 3106 8.773404 ATAAACTACTTATGTGGTGACAACTC 57.227 34.615 0.00 0.00 46.06 3.01
2137 3132 7.651304 CGCTTCTATGATTCTATTCAGTTCAGT 59.349 37.037 0.00 0.00 0.00 3.41
2153 3148 2.177394 TGGTTGTTGCGCTTCTATGA 57.823 45.000 9.73 0.00 0.00 2.15
2687 3685 8.555896 TTTTAGGGGAAATAAAACAGACCTTT 57.444 30.769 0.00 0.00 29.46 3.11
2688 3686 8.555896 TTTTTAGGGGAAATAAAACAGACCTT 57.444 30.769 0.00 0.00 33.14 3.50
2796 3821 1.747355 CCTTGACAATGAGGACATGCC 59.253 52.381 0.00 0.00 36.79 4.40
2797 3822 2.440409 ACCTTGACAATGAGGACATGC 58.560 47.619 0.00 0.00 36.79 4.06
2798 3823 4.074259 TGAACCTTGACAATGAGGACATG 58.926 43.478 0.00 0.00 36.79 3.21
2799 3824 4.371624 TGAACCTTGACAATGAGGACAT 57.628 40.909 0.00 0.00 36.84 3.06
2800 3825 3.855255 TGAACCTTGACAATGAGGACA 57.145 42.857 0.00 0.00 36.84 4.02
2801 3826 4.616835 GCAATGAACCTTGACAATGAGGAC 60.617 45.833 0.00 0.00 36.84 3.85
2802 3827 3.507233 GCAATGAACCTTGACAATGAGGA 59.493 43.478 0.00 0.00 36.84 3.71
2803 3828 3.508793 AGCAATGAACCTTGACAATGAGG 59.491 43.478 0.00 0.00 39.02 3.86
2865 3891 3.250040 AGTGGAACAAATCAGTACAACGC 59.750 43.478 0.00 0.00 44.16 4.84
2906 3933 5.757886 TCAGAAAGGCAACACGAAAATAAG 58.242 37.500 0.00 0.00 41.41 1.73
2925 3952 0.250234 CATTGGCTCGGTCCTTCAGA 59.750 55.000 0.00 0.00 0.00 3.27
3119 4146 4.989279 ACAAAGAATGGCACCATATCAC 57.011 40.909 1.81 0.00 35.31 3.06
3144 4171 4.398673 AGCAAATTTCTGCAAAAAGCCAAA 59.601 33.333 4.99 0.00 45.18 3.28
3229 4256 1.034292 GGCCCATCTCAACTTCCAGC 61.034 60.000 0.00 0.00 0.00 4.85
3327 4354 8.328864 CAAGCTTATAAGTAATCAACTTCCGAC 58.671 37.037 13.91 0.00 45.64 4.79
3558 4585 7.750947 AAAGTAGACCTGGGACTAATATTGT 57.249 36.000 0.00 0.00 0.00 2.71
3562 4589 7.179076 GTCAAAAGTAGACCTGGGACTAATA 57.821 40.000 0.00 0.00 0.00 0.98
3590 4617 3.518705 AGATGCCAGTGATTGAGACTTCT 59.481 43.478 0.00 0.00 0.00 2.85
3618 4645 4.202131 CGGAGGGAGTATTTAGGAACAGAC 60.202 50.000 0.00 0.00 0.00 3.51
3623 4650 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
3631 4658 0.549950 ATTCTCGGACGGAGGGAGTA 59.450 55.000 9.88 0.00 43.34 2.59
3632 4659 0.549950 TATTCTCGGACGGAGGGAGT 59.450 55.000 9.88 0.00 43.34 3.85
3633 4660 0.953003 GTATTCTCGGACGGAGGGAG 59.047 60.000 9.88 0.00 43.34 4.30
3634 4661 0.549950 AGTATTCTCGGACGGAGGGA 59.450 55.000 9.88 0.77 43.34 4.20
3635 4662 1.067212 CAAGTATTCTCGGACGGAGGG 59.933 57.143 9.88 0.00 43.34 4.30
3636 4663 1.749634 ACAAGTATTCTCGGACGGAGG 59.250 52.381 9.88 0.00 43.34 4.30
3637 4664 2.422479 TGACAAGTATTCTCGGACGGAG 59.578 50.000 3.68 3.68 44.58 4.63
3638 4665 2.439409 TGACAAGTATTCTCGGACGGA 58.561 47.619 0.00 0.00 0.00 4.69
3639 4666 2.933495 TGACAAGTATTCTCGGACGG 57.067 50.000 0.00 0.00 0.00 4.79
3640 4667 4.482386 TCTTTGACAAGTATTCTCGGACG 58.518 43.478 0.00 0.00 0.00 4.79
3641 4668 6.780706 TTTCTTTGACAAGTATTCTCGGAC 57.219 37.500 0.00 0.00 0.00 4.79
3642 4669 6.371548 CCATTTCTTTGACAAGTATTCTCGGA 59.628 38.462 0.00 0.00 0.00 4.55
3643 4670 6.371548 TCCATTTCTTTGACAAGTATTCTCGG 59.628 38.462 0.00 0.00 0.00 4.63
3644 4671 7.364522 TCCATTTCTTTGACAAGTATTCTCG 57.635 36.000 0.00 0.00 0.00 4.04
3645 4672 8.734386 ACATCCATTTCTTTGACAAGTATTCTC 58.266 33.333 0.00 0.00 0.00 2.87
3646 4673 8.641498 ACATCCATTTCTTTGACAAGTATTCT 57.359 30.769 0.00 0.00 0.00 2.40
3649 4676 9.911788 AGATACATCCATTTCTTTGACAAGTAT 57.088 29.630 0.00 0.00 0.00 2.12
3651 4678 9.388506 CTAGATACATCCATTTCTTTGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
3652 4679 9.605275 TCTAGATACATCCATTTCTTTGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
3653 4680 9.383519 GTCTAGATACATCCATTTCTTTGACAA 57.616 33.333 0.00 0.00 0.00 3.18
3654 4681 7.706607 CGTCTAGATACATCCATTTCTTTGACA 59.293 37.037 0.00 0.00 0.00 3.58
3655 4682 7.707035 ACGTCTAGATACATCCATTTCTTTGAC 59.293 37.037 0.00 0.00 0.00 3.18
3656 4683 7.782049 ACGTCTAGATACATCCATTTCTTTGA 58.218 34.615 0.00 0.00 0.00 2.69
3657 4684 9.698309 ATACGTCTAGATACATCCATTTCTTTG 57.302 33.333 0.00 0.00 0.00 2.77
3696 4723 9.460019 TCACAGAAATGTATGAAAATGGATGTA 57.540 29.630 0.00 0.00 0.00 2.29
3697 4724 8.246180 GTCACAGAAATGTATGAAAATGGATGT 58.754 33.333 0.00 0.00 0.00 3.06
3698 4725 8.245491 TGTCACAGAAATGTATGAAAATGGATG 58.755 33.333 0.00 0.00 0.00 3.51
3699 4726 8.352137 TGTCACAGAAATGTATGAAAATGGAT 57.648 30.769 0.00 0.00 0.00 3.41
3700 4727 7.757941 TGTCACAGAAATGTATGAAAATGGA 57.242 32.000 0.00 0.00 0.00 3.41
3701 4728 8.084073 ACTTGTCACAGAAATGTATGAAAATGG 58.916 33.333 0.00 0.00 0.00 3.16
3707 4734 8.946085 GGAATTACTTGTCACAGAAATGTATGA 58.054 33.333 0.00 0.00 0.00 2.15
3708 4735 7.904977 CGGAATTACTTGTCACAGAAATGTATG 59.095 37.037 0.00 0.00 0.00 2.39
3709 4736 7.065803 CCGGAATTACTTGTCACAGAAATGTAT 59.934 37.037 0.00 0.00 0.00 2.29
3710 4737 6.370442 CCGGAATTACTTGTCACAGAAATGTA 59.630 38.462 0.00 0.00 0.00 2.29
3711 4738 5.181245 CCGGAATTACTTGTCACAGAAATGT 59.819 40.000 0.00 0.00 0.00 2.71
3712 4739 5.411361 TCCGGAATTACTTGTCACAGAAATG 59.589 40.000 0.00 0.00 0.00 2.32
3713 4740 5.411669 GTCCGGAATTACTTGTCACAGAAAT 59.588 40.000 5.23 0.00 0.00 2.17
3714 4741 4.753107 GTCCGGAATTACTTGTCACAGAAA 59.247 41.667 5.23 0.00 0.00 2.52
3715 4742 4.312443 GTCCGGAATTACTTGTCACAGAA 58.688 43.478 5.23 0.00 0.00 3.02
3716 4743 3.613193 CGTCCGGAATTACTTGTCACAGA 60.613 47.826 5.23 0.00 0.00 3.41
3717 4744 2.666508 CGTCCGGAATTACTTGTCACAG 59.333 50.000 5.23 0.00 0.00 3.66
3718 4745 2.610976 CCGTCCGGAATTACTTGTCACA 60.611 50.000 5.23 0.00 37.50 3.58
3719 4746 1.997606 CCGTCCGGAATTACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
3720 4747 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3721 4748 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3722 4749 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3723 4750 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3724 4751 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
3725 4752 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
3726 4753 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
3727 4754 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
3728 4755 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
3729 4756 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
3730 4757 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3731 4758 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
3732 4759 1.245732 CTTATACTCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
3733 4760 1.878734 GACTTATACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
3734 4761 3.226682 AGACTTATACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
3735 4762 5.595257 AAAAGACTTATACTCCCTCCGTC 57.405 43.478 0.00 0.00 0.00 4.79
3736 4763 6.894103 TCTAAAAAGACTTATACTCCCTCCGT 59.106 38.462 0.00 0.00 0.00 4.69
3737 4764 7.284944 TCTCTAAAAAGACTTATACTCCCTCCG 59.715 40.741 0.00 0.00 0.00 4.63
3738 4765 8.536340 TCTCTAAAAAGACTTATACTCCCTCC 57.464 38.462 0.00 0.00 0.00 4.30
3844 5013 8.440771 CCTCCATTCCTAAATATAAGTCCACTT 58.559 37.037 0.00 0.00 39.85 3.16
3865 5047 0.833287 GCATGAAGCTACTCCCTCCA 59.167 55.000 0.00 0.00 41.15 3.86
4054 5236 6.237901 ACATGTAAAAGCAGGTTCATGTCTA 58.762 36.000 10.78 0.00 40.81 2.59
4138 5320 3.775654 GGACTCCTCCTGCACGGG 61.776 72.222 2.86 0.00 33.07 5.28
4216 5398 4.643334 GGGTCAGTGTTCAAACCTTTAAGT 59.357 41.667 0.00 0.00 32.22 2.24
4240 5422 2.500504 AGGAGGAAGTAATTGACGGGAC 59.499 50.000 0.00 0.00 0.00 4.46
4249 5431 5.046950 GTGACAGACAGAAGGAGGAAGTAAT 60.047 44.000 0.00 0.00 0.00 1.89
4256 5438 1.967066 ACAGTGACAGACAGAAGGAGG 59.033 52.381 0.00 0.00 0.00 4.30
4598 5781 1.153628 CCGAATCCGACAGGTCCAC 60.154 63.158 0.00 0.00 39.05 4.02
4680 5863 5.862924 ACAATGTAATGTAGCACACAGAC 57.137 39.130 0.00 0.00 41.51 3.51
4688 5871 5.682862 GCACTGCAATACAATGTAATGTAGC 59.317 40.000 21.07 9.73 39.04 3.58
4696 5889 1.820519 CCTGGCACTGCAATACAATGT 59.179 47.619 2.82 0.00 0.00 2.71
4741 5934 2.915659 ACGGAGACTTCGCCACCA 60.916 61.111 2.13 0.00 35.39 4.17
4744 5937 1.248101 TGATCACGGAGACTTCGCCA 61.248 55.000 2.13 0.00 35.39 5.69
4745 5938 0.103208 ATGATCACGGAGACTTCGCC 59.897 55.000 2.13 0.00 0.00 5.54
4853 6046 3.944015 CCAGCTCAGGGAGTTAGAAAATG 59.056 47.826 0.00 0.00 31.39 2.32
4889 6082 0.102120 GATCGGCTCAGTGTCTCTGG 59.898 60.000 2.21 0.00 43.76 3.86
4895 6088 2.625737 CATCTTTGATCGGCTCAGTGT 58.374 47.619 0.00 0.00 34.68 3.55
4899 6092 3.450817 TCTTACCATCTTTGATCGGCTCA 59.549 43.478 0.00 0.00 0.00 4.26
4904 6097 8.338259 CCATAGTTTTCTTACCATCTTTGATCG 58.662 37.037 0.00 0.00 0.00 3.69
4946 6139 1.287503 CCTAGCTCGGCCGATCTTC 59.712 63.158 33.91 20.16 0.00 2.87
4975 6168 1.599171 CGAGAGAGCACACATCGATCC 60.599 57.143 0.00 0.00 35.47 3.36
5031 6225 2.796193 ATCTATGCGCCGCTCACCA 61.796 57.895 11.67 0.00 0.00 4.17
5037 6231 0.727122 GCAAATCATCTATGCGCCGC 60.727 55.000 4.18 0.00 0.00 6.53
5064 6258 2.274645 CCGACCAATTGCAGCCCAA 61.275 57.895 0.00 0.00 37.94 4.12
5065 6259 2.676121 CCGACCAATTGCAGCCCA 60.676 61.111 0.00 0.00 0.00 5.36
5066 6260 2.361104 TCCGACCAATTGCAGCCC 60.361 61.111 0.00 0.00 0.00 5.19
5075 6269 1.067142 CGTTCTCCAATCTCCGACCAA 60.067 52.381 0.00 0.00 0.00 3.67
5077 6271 0.815734 TCGTTCTCCAATCTCCGACC 59.184 55.000 0.00 0.00 0.00 4.79
5078 6272 1.202313 CCTCGTTCTCCAATCTCCGAC 60.202 57.143 0.00 0.00 0.00 4.79
5079 6273 1.103803 CCTCGTTCTCCAATCTCCGA 58.896 55.000 0.00 0.00 0.00 4.55
5080 6274 0.103208 CCCTCGTTCTCCAATCTCCG 59.897 60.000 0.00 0.00 0.00 4.63
5081 6275 0.466124 CCCCTCGTTCTCCAATCTCC 59.534 60.000 0.00 0.00 0.00 3.71
5082 6276 0.466124 CCCCCTCGTTCTCCAATCTC 59.534 60.000 0.00 0.00 0.00 2.75
5083 6277 0.042731 TCCCCCTCGTTCTCCAATCT 59.957 55.000 0.00 0.00 0.00 2.40
5084 6278 1.132500 ATCCCCCTCGTTCTCCAATC 58.868 55.000 0.00 0.00 0.00 2.67
5085 6279 1.212935 CAATCCCCCTCGTTCTCCAAT 59.787 52.381 0.00 0.00 0.00 3.16
5086 6280 0.618458 CAATCCCCCTCGTTCTCCAA 59.382 55.000 0.00 0.00 0.00 3.53
5087 6281 1.271840 CCAATCCCCCTCGTTCTCCA 61.272 60.000 0.00 0.00 0.00 3.86
5088 6282 0.981277 TCCAATCCCCCTCGTTCTCC 60.981 60.000 0.00 0.00 0.00 3.71
5089 6283 0.178301 GTCCAATCCCCCTCGTTCTC 59.822 60.000 0.00 0.00 0.00 2.87
5090 6284 1.614241 CGTCCAATCCCCCTCGTTCT 61.614 60.000 0.00 0.00 0.00 3.01
5091 6285 1.153429 CGTCCAATCCCCCTCGTTC 60.153 63.158 0.00 0.00 0.00 3.95
5092 6286 2.666098 CCGTCCAATCCCCCTCGTT 61.666 63.158 0.00 0.00 0.00 3.85
5093 6287 3.081409 CCGTCCAATCCCCCTCGT 61.081 66.667 0.00 0.00 0.00 4.18
5094 6288 3.081409 ACCGTCCAATCCCCCTCG 61.081 66.667 0.00 0.00 0.00 4.63
5095 6289 2.743179 GGACCGTCCAATCCCCCTC 61.743 68.421 13.05 0.00 36.28 4.30
5096 6290 2.691252 GGACCGTCCAATCCCCCT 60.691 66.667 13.05 0.00 36.28 4.79
5097 6291 4.171103 CGGACCGTCCAATCCCCC 62.171 72.222 17.87 0.00 35.91 5.40
5098 6292 2.187896 TTTCGGACCGTCCAATCCCC 62.188 60.000 17.87 0.00 35.91 4.81
5099 6293 1.022982 GTTTCGGACCGTCCAATCCC 61.023 60.000 17.87 0.00 35.91 3.85
5100 6294 1.356527 CGTTTCGGACCGTCCAATCC 61.357 60.000 17.87 1.79 35.91 3.01
5101 6295 2.075761 CGTTTCGGACCGTCCAATC 58.924 57.895 17.87 8.86 35.91 2.67
5102 6296 4.272100 CGTTTCGGACCGTCCAAT 57.728 55.556 17.87 0.00 35.91 3.16
5117 6311 2.966516 AGTTTCTTCCAGAACTCTCCGT 59.033 45.455 0.00 0.00 33.26 4.69
5130 6324 3.694043 AGGAGCTCCTTCAGTTTCTTC 57.306 47.619 30.40 0.00 46.09 2.87
5147 6341 1.076024 AGAGGCTGGCAAATCAAAGGA 59.924 47.619 3.38 0.00 0.00 3.36
5155 6350 1.956477 GTTTCAGAAGAGGCTGGCAAA 59.044 47.619 3.38 0.00 36.55 3.68
5193 6388 6.094603 CGACATTCTTCTTCTTCCCATCAATT 59.905 38.462 0.00 0.00 0.00 2.32
5209 6404 2.571757 TCGCTCGCCGACATTCTT 59.428 55.556 0.00 0.00 41.89 2.52
5239 6434 7.747155 TTTCCTTTGTATCACAAATCGGTTA 57.253 32.000 5.03 0.00 45.79 2.85
5269 6464 8.260818 TCAAACACAGGAATAACAATTTTGGAA 58.739 29.630 0.00 0.00 0.00 3.53
5289 6484 6.183360 GGTGCCGATGAATAGTTTATCAAACA 60.183 38.462 4.73 0.00 43.79 2.83
5292 6487 5.432645 TGGTGCCGATGAATAGTTTATCAA 58.567 37.500 0.00 0.00 0.00 2.57
5294 6489 5.295787 TGTTGGTGCCGATGAATAGTTTATC 59.704 40.000 0.00 0.00 0.00 1.75
5295 6490 5.189928 TGTTGGTGCCGATGAATAGTTTAT 58.810 37.500 0.00 0.00 0.00 1.40
5296 6491 4.580868 TGTTGGTGCCGATGAATAGTTTA 58.419 39.130 0.00 0.00 0.00 2.01
5297 6492 3.417101 TGTTGGTGCCGATGAATAGTTT 58.583 40.909 0.00 0.00 0.00 2.66
5298 6493 3.066291 TGTTGGTGCCGATGAATAGTT 57.934 42.857 0.00 0.00 0.00 2.24
5299 6494 2.779755 TGTTGGTGCCGATGAATAGT 57.220 45.000 0.00 0.00 0.00 2.12
5300 6495 5.749596 TTATTGTTGGTGCCGATGAATAG 57.250 39.130 0.00 0.00 0.00 1.73
5301 6496 4.036262 GCTTATTGTTGGTGCCGATGAATA 59.964 41.667 0.00 0.00 0.00 1.75
5302 6497 3.181487 GCTTATTGTTGGTGCCGATGAAT 60.181 43.478 0.00 0.00 0.00 2.57
5303 6498 2.163412 GCTTATTGTTGGTGCCGATGAA 59.837 45.455 0.00 0.00 0.00 2.57
5304 6499 1.742831 GCTTATTGTTGGTGCCGATGA 59.257 47.619 0.00 0.00 0.00 2.92
5305 6500 1.202290 GGCTTATTGTTGGTGCCGATG 60.202 52.381 0.00 0.00 33.96 3.84
5306 6501 1.102978 GGCTTATTGTTGGTGCCGAT 58.897 50.000 0.00 0.00 33.96 4.18
5307 6502 2.562125 GGCTTATTGTTGGTGCCGA 58.438 52.632 0.00 0.00 33.96 5.54
5309 6504 0.170339 GTCGGCTTATTGTTGGTGCC 59.830 55.000 0.00 0.00 40.14 5.01
5310 6505 0.179200 CGTCGGCTTATTGTTGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
5311 6506 1.153353 ACGTCGGCTTATTGTTGGTG 58.847 50.000 0.00 0.00 0.00 4.17
5312 6507 2.613691 CTACGTCGGCTTATTGTTGGT 58.386 47.619 0.00 0.00 0.00 3.67
5313 6508 1.931172 CCTACGTCGGCTTATTGTTGG 59.069 52.381 0.00 0.00 0.00 3.77
5314 6509 1.326548 GCCTACGTCGGCTTATTGTTG 59.673 52.381 22.93 0.00 46.63 3.33
5315 6510 1.648504 GCCTACGTCGGCTTATTGTT 58.351 50.000 22.93 0.00 46.63 2.83
5316 6511 3.357504 GCCTACGTCGGCTTATTGT 57.642 52.632 22.93 0.00 46.63 2.71
5324 6519 0.462789 AAATGTAGGGCCTACGTCGG 59.537 55.000 32.86 0.79 39.58 4.79
5325 6520 1.931172 CAAAATGTAGGGCCTACGTCG 59.069 52.381 32.86 21.95 39.58 5.12
5326 6521 2.981898 ACAAAATGTAGGGCCTACGTC 58.018 47.619 32.86 14.83 39.58 4.34
5327 6522 3.244630 TGAACAAAATGTAGGGCCTACGT 60.245 43.478 32.52 30.74 39.58 3.57
5328 6523 3.340034 TGAACAAAATGTAGGGCCTACG 58.660 45.455 32.52 22.28 39.58 3.51
5329 6524 4.705023 ACATGAACAAAATGTAGGGCCTAC 59.295 41.667 32.37 32.37 36.50 3.18
5330 6525 4.704540 CACATGAACAAAATGTAGGGCCTA 59.295 41.667 9.81 9.81 36.10 3.93
5331 6526 3.511146 CACATGAACAAAATGTAGGGCCT 59.489 43.478 12.58 12.58 36.10 5.19
5332 6527 3.848726 CACATGAACAAAATGTAGGGCC 58.151 45.455 0.00 0.00 36.10 5.80
5333 6528 3.056607 AGCACATGAACAAAATGTAGGGC 60.057 43.478 0.00 0.00 36.10 5.19
5334 6529 4.672542 CGAGCACATGAACAAAATGTAGGG 60.673 45.833 0.00 0.00 36.10 3.53
5335 6530 4.154015 TCGAGCACATGAACAAAATGTAGG 59.846 41.667 0.00 0.00 36.10 3.18
5336 6531 5.120674 TCTCGAGCACATGAACAAAATGTAG 59.879 40.000 7.81 0.00 36.10 2.74
5337 6532 4.994217 TCTCGAGCACATGAACAAAATGTA 59.006 37.500 7.81 0.00 36.10 2.29
5338 6533 3.814842 TCTCGAGCACATGAACAAAATGT 59.185 39.130 7.81 0.00 38.81 2.71
5339 6534 4.408993 TCTCGAGCACATGAACAAAATG 57.591 40.909 7.81 0.00 0.00 2.32
5340 6535 4.320494 GGTTCTCGAGCACATGAACAAAAT 60.320 41.667 16.98 0.00 40.12 1.82
5341 6536 3.003275 GGTTCTCGAGCACATGAACAAAA 59.997 43.478 16.98 0.00 40.12 2.44
5342 6537 2.548057 GGTTCTCGAGCACATGAACAAA 59.452 45.455 16.98 0.00 40.12 2.83
5343 6538 2.143122 GGTTCTCGAGCACATGAACAA 58.857 47.619 16.98 0.00 40.12 2.83
5344 6539 1.344438 AGGTTCTCGAGCACATGAACA 59.656 47.619 16.98 0.00 40.12 3.18
5345 6540 1.728971 CAGGTTCTCGAGCACATGAAC 59.271 52.381 22.47 13.22 38.33 3.18
5346 6541 1.344438 ACAGGTTCTCGAGCACATGAA 59.656 47.619 30.96 7.60 28.49 2.57
5347 6542 0.969149 ACAGGTTCTCGAGCACATGA 59.031 50.000 30.96 1.03 28.49 3.07
5348 6543 1.073964 CACAGGTTCTCGAGCACATG 58.926 55.000 24.56 24.56 0.00 3.21
5349 6544 0.036952 CCACAGGTTCTCGAGCACAT 60.037 55.000 16.98 7.08 0.00 3.21
5350 6545 1.367471 CCACAGGTTCTCGAGCACA 59.633 57.895 16.98 0.00 0.00 4.57
5351 6546 1.374758 CCCACAGGTTCTCGAGCAC 60.375 63.158 7.81 7.20 0.00 4.40
5352 6547 0.904865 ATCCCACAGGTTCTCGAGCA 60.905 55.000 7.81 0.00 0.00 4.26
5353 6548 0.460987 CATCCCACAGGTTCTCGAGC 60.461 60.000 7.81 0.00 0.00 5.03
5354 6549 0.460987 GCATCCCACAGGTTCTCGAG 60.461 60.000 5.93 5.93 0.00 4.04
5355 6550 1.596934 GCATCCCACAGGTTCTCGA 59.403 57.895 0.00 0.00 0.00 4.04
5356 6551 1.450312 GGCATCCCACAGGTTCTCG 60.450 63.158 0.00 0.00 0.00 4.04
5357 6552 1.450312 CGGCATCCCACAGGTTCTC 60.450 63.158 0.00 0.00 0.00 2.87
5358 6553 2.671070 CGGCATCCCACAGGTTCT 59.329 61.111 0.00 0.00 0.00 3.01
5359 6554 3.134127 GCGGCATCCCACAGGTTC 61.134 66.667 0.00 0.00 0.00 3.62
5360 6555 4.740822 GGCGGCATCCCACAGGTT 62.741 66.667 3.07 0.00 0.00 3.50
5362 6557 2.343475 ATAAGGCGGCATCCCACAGG 62.343 60.000 13.08 0.00 0.00 4.00
5363 6558 0.396435 TATAAGGCGGCATCCCACAG 59.604 55.000 13.08 0.00 0.00 3.66
5364 6559 0.107831 GTATAAGGCGGCATCCCACA 59.892 55.000 13.08 0.00 0.00 4.17
5365 6560 0.107831 TGTATAAGGCGGCATCCCAC 59.892 55.000 13.08 2.70 0.00 4.61
5366 6561 1.003118 GATGTATAAGGCGGCATCCCA 59.997 52.381 13.08 0.92 33.59 4.37
5367 6562 1.279271 AGATGTATAAGGCGGCATCCC 59.721 52.381 13.08 0.00 38.67 3.85
5368 6563 2.350522 CAGATGTATAAGGCGGCATCC 58.649 52.381 13.08 0.00 38.67 3.51
5369 6564 1.734465 GCAGATGTATAAGGCGGCATC 59.266 52.381 13.08 4.00 38.30 3.91
5370 6565 1.611673 GGCAGATGTATAAGGCGGCAT 60.612 52.381 13.08 0.26 0.00 4.40
5371 6566 0.250295 GGCAGATGTATAAGGCGGCA 60.250 55.000 13.08 0.00 0.00 5.69
5372 6567 1.291877 CGGCAGATGTATAAGGCGGC 61.292 60.000 0.00 0.00 44.83 6.53
5373 6568 2.827604 CGGCAGATGTATAAGGCGG 58.172 57.895 0.00 0.00 44.83 6.13
5375 6570 1.884235 AAGCGGCAGATGTATAAGGC 58.116 50.000 1.45 0.00 0.00 4.35
5376 6571 3.733337 AGAAAGCGGCAGATGTATAAGG 58.267 45.455 1.45 0.00 0.00 2.69
5377 6572 3.743396 GGAGAAAGCGGCAGATGTATAAG 59.257 47.826 1.45 0.00 0.00 1.73
5378 6573 3.494398 GGGAGAAAGCGGCAGATGTATAA 60.494 47.826 1.45 0.00 0.00 0.98
5379 6574 2.037251 GGGAGAAAGCGGCAGATGTATA 59.963 50.000 1.45 0.00 0.00 1.47
5380 6575 1.202698 GGGAGAAAGCGGCAGATGTAT 60.203 52.381 1.45 0.00 0.00 2.29
5381 6576 0.178068 GGGAGAAAGCGGCAGATGTA 59.822 55.000 1.45 0.00 0.00 2.29
5382 6577 1.078143 GGGAGAAAGCGGCAGATGT 60.078 57.895 1.45 0.00 0.00 3.06
5383 6578 0.393537 AAGGGAGAAAGCGGCAGATG 60.394 55.000 1.45 0.00 0.00 2.90
5384 6579 0.107459 GAAGGGAGAAAGCGGCAGAT 60.107 55.000 1.45 0.00 0.00 2.90
5385 6580 1.194781 AGAAGGGAGAAAGCGGCAGA 61.195 55.000 1.45 0.00 0.00 4.26
5386 6581 0.537188 TAGAAGGGAGAAAGCGGCAG 59.463 55.000 1.45 0.00 0.00 4.85
5387 6582 0.249398 GTAGAAGGGAGAAAGCGGCA 59.751 55.000 1.45 0.00 0.00 5.69
5388 6583 0.537653 AGTAGAAGGGAGAAAGCGGC 59.462 55.000 0.00 0.00 0.00 6.53
5389 6584 1.137282 GGAGTAGAAGGGAGAAAGCGG 59.863 57.143 0.00 0.00 0.00 5.52
5390 6585 1.137282 GGGAGTAGAAGGGAGAAAGCG 59.863 57.143 0.00 0.00 0.00 4.68
5391 6586 2.432874 GAGGGAGTAGAAGGGAGAAAGC 59.567 54.545 0.00 0.00 0.00 3.51
5392 6587 3.035363 GGAGGGAGTAGAAGGGAGAAAG 58.965 54.545 0.00 0.00 0.00 2.62
5393 6588 2.623502 CGGAGGGAGTAGAAGGGAGAAA 60.624 54.545 0.00 0.00 0.00 2.52
5394 6589 1.063867 CGGAGGGAGTAGAAGGGAGAA 60.064 57.143 0.00 0.00 0.00 2.87
5395 6590 0.551879 CGGAGGGAGTAGAAGGGAGA 59.448 60.000 0.00 0.00 0.00 3.71
5396 6591 0.259356 ACGGAGGGAGTAGAAGGGAG 59.741 60.000 0.00 0.00 0.00 4.30
5397 6592 0.708802 AACGGAGGGAGTAGAAGGGA 59.291 55.000 0.00 0.00 0.00 4.20
5398 6593 1.481363 GAAACGGAGGGAGTAGAAGGG 59.519 57.143 0.00 0.00 0.00 3.95
5399 6594 2.458620 AGAAACGGAGGGAGTAGAAGG 58.541 52.381 0.00 0.00 0.00 3.46
5400 6595 5.656213 TTTAGAAACGGAGGGAGTAGAAG 57.344 43.478 0.00 0.00 0.00 2.85
5401 6596 7.909485 ATATTTAGAAACGGAGGGAGTAGAA 57.091 36.000 0.00 0.00 0.00 2.10
5402 6597 9.597681 ATTATATTTAGAAACGGAGGGAGTAGA 57.402 33.333 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.