Multiple sequence alignment - TraesCS5D01G329100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G329100 chr5D 100.000 6100 0 0 1 6100 421229577 421223478 0.000000e+00 11265.0
1 TraesCS5D01G329100 chr5D 85.304 592 75 9 5426 6014 488444866 488444284 8.750000e-168 601.0
2 TraesCS5D01G329100 chr5D 85.660 530 64 10 5426 5949 331591322 331590799 1.160000e-151 547.0
3 TraesCS5D01G329100 chr5D 100.000 28 0 0 1315 1342 369061388 369061361 1.100000e-02 52.8
4 TraesCS5D01G329100 chr5A 89.743 5138 305 123 314 5311 534821512 534816457 0.000000e+00 6364.0
5 TraesCS5D01G329100 chr5A 100.000 28 0 0 1315 1342 471511669 471511696 1.100000e-02 52.8
6 TraesCS5D01G329100 chr5B 91.068 3202 159 61 536 3688 507617530 507614407 0.000000e+00 4211.0
7 TraesCS5D01G329100 chr5B 95.722 748 19 7 4620 5358 507613162 507612419 0.000000e+00 1192.0
8 TraesCS5D01G329100 chr5B 89.041 657 42 14 3960 4608 507614001 507613367 0.000000e+00 787.0
9 TraesCS5D01G329100 chr5B 95.402 261 10 1 3673 3933 507614256 507613998 1.220000e-111 414.0
10 TraesCS5D01G329100 chr5B 92.982 57 1 2 5960 6014 22574889 22574834 5.070000e-11 80.5
11 TraesCS5D01G329100 chr5B 100.000 28 0 0 1315 1342 437572179 437572206 1.100000e-02 52.8
12 TraesCS5D01G329100 chr2B 85.495 586 75 9 5426 6007 383253783 383254362 2.430000e-168 603.0
13 TraesCS5D01G329100 chr2B 84.587 545 74 10 5426 5963 239212131 239211590 3.240000e-147 532.0
14 TraesCS5D01G329100 chr2B 83.721 430 61 9 5541 5964 553837530 553837104 1.230000e-106 398.0
15 TraesCS5D01G329100 chr2B 91.837 49 3 1 5960 6008 94220050 94220097 3.950000e-07 67.6
16 TraesCS5D01G329100 chr2A 87.287 527 61 6 5426 5949 459550874 459550351 1.130000e-166 597.0
17 TraesCS5D01G329100 chr2A 90.698 86 7 1 6016 6100 55111977 55111892 5.000000e-21 113.0
18 TraesCS5D01G329100 chr3D 87.041 517 62 5 5426 5939 491936872 491937386 4.100000e-161 579.0
19 TraesCS5D01G329100 chr2D 85.234 535 70 8 5427 5958 326779463 326779991 5.380000e-150 542.0
20 TraesCS5D01G329100 chr7D 84.815 540 74 6 5438 5971 382386551 382386014 2.500000e-148 536.0
21 TraesCS5D01G329100 chr7D 78.902 346 59 13 4675 5012 495851926 495851587 7.960000e-54 222.0
22 TraesCS5D01G329100 chr7D 93.182 44 3 0 5966 6009 382386003 382385960 1.420000e-06 65.8
23 TraesCS5D01G329100 chr6D 84.860 535 76 4 5429 5960 435016506 435017038 9.000000e-148 534.0
24 TraesCS5D01G329100 chr7A 80.119 337 53 12 4675 5004 561603313 561602984 7.900000e-59 239.0
25 TraesCS5D01G329100 chr7B 79.762 336 56 11 4675 5004 524228423 524228094 3.680000e-57 233.0
26 TraesCS5D01G329100 chr1D 92.857 84 5 1 6018 6100 326144934 326144851 2.990000e-23 121.0
27 TraesCS5D01G329100 chr4D 94.545 55 2 1 5960 6014 301154096 301154043 3.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G329100 chr5D 421223478 421229577 6099 True 11265.0 11265 100.00000 1 6100 1 chr5D.!!$R3 6099
1 TraesCS5D01G329100 chr5D 488444284 488444866 582 True 601.0 601 85.30400 5426 6014 1 chr5D.!!$R4 588
2 TraesCS5D01G329100 chr5D 331590799 331591322 523 True 547.0 547 85.66000 5426 5949 1 chr5D.!!$R1 523
3 TraesCS5D01G329100 chr5A 534816457 534821512 5055 True 6364.0 6364 89.74300 314 5311 1 chr5A.!!$R1 4997
4 TraesCS5D01G329100 chr5B 507612419 507617530 5111 True 1651.0 4211 92.80825 536 5358 4 chr5B.!!$R2 4822
5 TraesCS5D01G329100 chr2B 383253783 383254362 579 False 603.0 603 85.49500 5426 6007 1 chr2B.!!$F2 581
6 TraesCS5D01G329100 chr2B 239211590 239212131 541 True 532.0 532 84.58700 5426 5963 1 chr2B.!!$R1 537
7 TraesCS5D01G329100 chr2A 459550351 459550874 523 True 597.0 597 87.28700 5426 5949 1 chr2A.!!$R2 523
8 TraesCS5D01G329100 chr3D 491936872 491937386 514 False 579.0 579 87.04100 5426 5939 1 chr3D.!!$F1 513
9 TraesCS5D01G329100 chr2D 326779463 326779991 528 False 542.0 542 85.23400 5427 5958 1 chr2D.!!$F1 531
10 TraesCS5D01G329100 chr7D 382385960 382386551 591 True 300.9 536 88.99850 5438 6009 2 chr7D.!!$R2 571
11 TraesCS5D01G329100 chr6D 435016506 435017038 532 False 534.0 534 84.86000 5429 5960 1 chr6D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.035317 TGAGGTGAATCTTGCAGCGT 59.965 50.0 0.00 0.00 38.68 5.07 F
115 116 0.038618 AACGCACGCAGTCATAGACA 60.039 50.0 0.00 0.00 41.61 3.41 F
145 146 0.179181 GAACACACGCATGAGGCATG 60.179 55.0 0.00 3.14 45.17 4.06 F
508 537 0.233848 CCGGACAAACAAGCGTACAC 59.766 55.0 0.00 0.00 0.00 2.90 F
1863 1986 0.321919 AGTGTTCCATCATGCGCACT 60.322 50.0 14.90 0.00 33.05 4.40 F
3070 3213 0.035056 ACAGGGACATAAGCAGTGGC 60.035 55.0 0.00 0.00 41.61 5.01 F
3984 4294 0.548682 ATCAGCTGACAGGGGAAGGT 60.549 55.0 20.97 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2102 0.328258 AACCCAGAAATGTCCCCTCG 59.672 55.000 0.00 0.00 0.00 4.63 R
1984 2107 2.365293 ACTTTGCAACCCAGAAATGTCC 59.635 45.455 0.00 0.00 0.00 4.02 R
2078 2205 5.833667 CCTCCCTTTTTCCTAACAAACTTCT 59.166 40.000 0.00 0.00 0.00 2.85 R
2310 2445 4.449743 CCCATCTGTCAGCATTTGTTTTTG 59.550 41.667 0.00 0.00 0.00 2.44 R
3650 3794 0.678950 TCAGGAATCTCACACGTGCA 59.321 50.000 17.22 0.81 0.00 4.57 R
4012 4322 0.108138 CACTAACGAAGGGCCTGAGG 60.108 60.000 6.92 1.29 0.00 3.86 R
5379 5912 0.039888 ATTTTAACGCGCCGTGCTTT 60.040 45.000 5.73 1.40 39.99 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.436536 GATGGTTTTATGCAATTTACTCGTG 57.563 36.000 0.00 0.00 0.00 4.35
25 26 5.157781 TGGTTTTATGCAATTTACTCGTGC 58.842 37.500 0.00 0.00 38.78 5.34
29 30 0.110419 TGCAATTTACTCGTGCACGC 60.110 50.000 33.63 16.73 43.09 5.34
30 31 0.110419 GCAATTTACTCGTGCACGCA 60.110 50.000 33.63 20.71 38.19 5.24
31 32 1.591248 CAATTTACTCGTGCACGCAC 58.409 50.000 33.63 12.17 43.01 5.34
32 33 0.515564 AATTTACTCGTGCACGCACC 59.484 50.000 33.63 0.00 43.49 5.01
33 34 1.296056 ATTTACTCGTGCACGCACCC 61.296 55.000 33.63 0.00 43.49 4.61
34 35 4.710695 TACTCGTGCACGCACCCG 62.711 66.667 33.63 19.65 43.49 5.28
46 47 2.282816 CACCCGCAACCCATGGAA 60.283 61.111 15.22 0.00 0.00 3.53
47 48 2.035626 ACCCGCAACCCATGGAAG 59.964 61.111 15.22 3.27 0.00 3.46
48 49 2.755469 CCCGCAACCCATGGAAGG 60.755 66.667 15.22 8.53 0.00 3.46
56 57 2.276740 CCATGGAAGGGGCCAGAC 59.723 66.667 5.56 0.00 42.15 3.51
57 58 2.615465 CCATGGAAGGGGCCAGACA 61.615 63.158 5.56 0.00 42.15 3.41
58 59 1.379044 CATGGAAGGGGCCAGACAC 60.379 63.158 4.39 0.00 42.15 3.67
59 60 2.971598 ATGGAAGGGGCCAGACACG 61.972 63.158 4.39 0.00 42.15 4.49
60 61 4.410400 GGAAGGGGCCAGACACGG 62.410 72.222 4.39 0.00 0.00 4.94
61 62 3.319198 GAAGGGGCCAGACACGGA 61.319 66.667 4.39 0.00 0.00 4.69
62 63 3.607370 GAAGGGGCCAGACACGGAC 62.607 68.421 4.39 0.00 0.00 4.79
67 68 4.357947 GCCAGACACGGACGCTCA 62.358 66.667 0.00 0.00 0.00 4.26
68 69 2.430921 CCAGACACGGACGCTCAC 60.431 66.667 0.00 0.00 0.00 3.51
70 71 4.702081 AGACACGGACGCTCACGC 62.702 66.667 0.00 0.00 45.53 5.34
71 72 4.702081 GACACGGACGCTCACGCT 62.702 66.667 0.00 0.00 45.53 5.07
72 73 4.280494 ACACGGACGCTCACGCTT 62.280 61.111 0.00 0.00 45.53 4.68
73 74 3.036084 CACGGACGCTCACGCTTT 61.036 61.111 0.00 0.00 45.53 3.51
74 75 3.036084 ACGGACGCTCACGCTTTG 61.036 61.111 0.00 0.00 45.53 2.77
75 76 2.733218 CGGACGCTCACGCTTTGA 60.733 61.111 0.00 0.00 45.53 2.69
84 85 2.839486 TCACGCTTTGAGGTGAATCT 57.161 45.000 0.00 0.00 40.01 2.40
85 86 3.126001 TCACGCTTTGAGGTGAATCTT 57.874 42.857 0.00 0.00 40.01 2.40
86 87 2.807967 TCACGCTTTGAGGTGAATCTTG 59.192 45.455 0.00 0.00 40.01 3.02
87 88 1.537202 ACGCTTTGAGGTGAATCTTGC 59.463 47.619 0.00 0.00 0.00 4.01
88 89 1.536766 CGCTTTGAGGTGAATCTTGCA 59.463 47.619 0.00 0.00 0.00 4.08
89 90 2.413765 CGCTTTGAGGTGAATCTTGCAG 60.414 50.000 0.00 0.00 0.00 4.41
90 91 2.670509 GCTTTGAGGTGAATCTTGCAGC 60.671 50.000 0.00 0.00 0.00 5.25
91 92 1.159285 TTGAGGTGAATCTTGCAGCG 58.841 50.000 0.00 0.00 38.68 5.18
92 93 0.035317 TGAGGTGAATCTTGCAGCGT 59.965 50.000 0.00 0.00 38.68 5.07
93 94 0.445436 GAGGTGAATCTTGCAGCGTG 59.555 55.000 0.00 0.00 38.68 5.34
94 95 1.154150 GGTGAATCTTGCAGCGTGC 60.154 57.895 3.44 3.44 45.29 5.34
111 112 3.761995 CGAACGCACGCAGTCATA 58.238 55.556 0.00 0.00 41.61 2.15
112 113 1.625870 CGAACGCACGCAGTCATAG 59.374 57.895 0.00 0.00 41.61 2.23
113 114 0.796870 CGAACGCACGCAGTCATAGA 60.797 55.000 0.00 0.00 41.61 1.98
114 115 0.640768 GAACGCACGCAGTCATAGAC 59.359 55.000 0.00 0.00 41.61 2.59
115 116 0.038618 AACGCACGCAGTCATAGACA 60.039 50.000 0.00 0.00 41.61 3.41
116 117 0.732880 ACGCACGCAGTCATAGACAC 60.733 55.000 0.00 0.00 41.61 3.67
117 118 0.732538 CGCACGCAGTCATAGACACA 60.733 55.000 0.00 0.00 41.61 3.72
118 119 0.994995 GCACGCAGTCATAGACACAG 59.005 55.000 0.00 0.00 41.61 3.66
119 120 1.670087 GCACGCAGTCATAGACACAGT 60.670 52.381 0.00 0.00 41.61 3.55
120 121 1.988467 CACGCAGTCATAGACACAGTG 59.012 52.381 0.00 0.00 41.61 3.66
121 122 1.067565 ACGCAGTCATAGACACAGTGG 60.068 52.381 5.31 0.00 29.74 4.00
122 123 1.202348 CGCAGTCATAGACACAGTGGA 59.798 52.381 5.31 0.00 34.60 4.02
123 124 2.352715 CGCAGTCATAGACACAGTGGAA 60.353 50.000 5.31 0.00 34.60 3.53
124 125 3.677148 CGCAGTCATAGACACAGTGGAAT 60.677 47.826 5.31 0.00 34.60 3.01
125 126 3.620374 GCAGTCATAGACACAGTGGAATG 59.380 47.826 5.31 5.69 34.60 2.67
126 127 4.186926 CAGTCATAGACACAGTGGAATGG 58.813 47.826 5.31 0.00 34.60 3.16
127 128 4.081476 CAGTCATAGACACAGTGGAATGGA 60.081 45.833 5.31 0.00 34.60 3.41
128 129 4.532126 AGTCATAGACACAGTGGAATGGAA 59.468 41.667 5.31 0.00 34.60 3.53
129 130 4.631813 GTCATAGACACAGTGGAATGGAAC 59.368 45.833 5.31 0.00 32.09 3.62
130 131 5.799918 GTCATAGACACAGTGGAATGGAACA 60.800 44.000 5.31 0.00 35.86 3.18
131 132 7.778256 GTCATAGACACAGTGGAATGGAACAC 61.778 46.154 5.31 0.00 34.62 3.32
141 142 4.377370 TGGAACACACGCATGAGG 57.623 55.556 0.00 0.00 0.00 3.86
142 143 1.965930 TGGAACACACGCATGAGGC 60.966 57.895 0.00 0.00 39.90 4.70
143 144 1.965930 GGAACACACGCATGAGGCA 60.966 57.895 0.00 0.00 45.17 4.75
144 145 1.308069 GGAACACACGCATGAGGCAT 61.308 55.000 0.00 0.00 45.17 4.40
145 146 0.179181 GAACACACGCATGAGGCATG 60.179 55.000 0.00 3.14 45.17 4.06
146 147 0.606130 AACACACGCATGAGGCATGA 60.606 50.000 11.31 0.00 43.81 3.07
147 148 1.022982 ACACACGCATGAGGCATGAG 61.023 55.000 11.31 10.17 43.81 2.90
150 151 3.417601 CGCATGAGGCATGAGTGG 58.582 61.111 11.31 0.00 43.81 4.00
151 152 1.450848 CGCATGAGGCATGAGTGGT 60.451 57.895 11.31 0.00 43.81 4.16
152 153 1.434622 CGCATGAGGCATGAGTGGTC 61.435 60.000 11.31 0.00 43.81 4.02
153 154 1.434622 GCATGAGGCATGAGTGGTCG 61.435 60.000 11.31 0.00 43.81 4.79
154 155 0.812811 CATGAGGCATGAGTGGTCGG 60.813 60.000 0.00 0.00 43.81 4.79
155 156 0.977627 ATGAGGCATGAGTGGTCGGA 60.978 55.000 0.00 0.00 0.00 4.55
156 157 1.142748 GAGGCATGAGTGGTCGGAG 59.857 63.158 0.00 0.00 0.00 4.63
157 158 2.512515 GGCATGAGTGGTCGGAGC 60.513 66.667 0.00 0.00 0.00 4.70
158 159 2.887568 GCATGAGTGGTCGGAGCG 60.888 66.667 0.00 0.00 0.00 5.03
159 160 2.573869 CATGAGTGGTCGGAGCGT 59.426 61.111 2.41 0.00 0.00 5.07
160 161 1.807165 CATGAGTGGTCGGAGCGTG 60.807 63.158 2.41 0.00 0.00 5.34
161 162 3.006756 ATGAGTGGTCGGAGCGTGG 62.007 63.158 2.41 0.00 0.00 4.94
162 163 3.681835 GAGTGGTCGGAGCGTGGT 61.682 66.667 2.41 0.00 0.00 4.16
163 164 3.916392 GAGTGGTCGGAGCGTGGTG 62.916 68.421 2.41 0.00 0.00 4.17
164 165 3.986006 GTGGTCGGAGCGTGGTGA 61.986 66.667 2.41 0.00 0.00 4.02
165 166 3.986006 TGGTCGGAGCGTGGTGAC 61.986 66.667 2.41 0.00 0.00 3.67
171 172 4.760047 GAGCGTGGTGACGGGCAT 62.760 66.667 0.00 0.00 46.20 4.40
172 173 4.760047 AGCGTGGTGACGGGCATC 62.760 66.667 0.00 0.00 46.20 3.91
219 220 4.767255 GACCACGAGGCAGGCAGG 62.767 72.222 0.00 0.00 39.06 4.85
237 238 2.674380 CAGGCCGGAGCTTGCTTT 60.674 61.111 5.05 0.00 39.45 3.51
238 239 2.674380 AGGCCGGAGCTTGCTTTG 60.674 61.111 5.05 0.00 39.73 2.77
239 240 2.672996 GGCCGGAGCTTGCTTTGA 60.673 61.111 5.05 0.00 39.73 2.69
240 241 2.563427 GCCGGAGCTTGCTTTGAC 59.437 61.111 5.05 0.00 35.50 3.18
241 242 2.982744 GCCGGAGCTTGCTTTGACC 61.983 63.158 5.05 0.00 35.50 4.02
242 243 1.302832 CCGGAGCTTGCTTTGACCT 60.303 57.895 0.00 0.00 0.00 3.85
243 244 1.301677 CCGGAGCTTGCTTTGACCTC 61.302 60.000 0.00 0.00 0.00 3.85
244 245 1.630244 CGGAGCTTGCTTTGACCTCG 61.630 60.000 0.00 0.00 0.00 4.63
245 246 0.603975 GGAGCTTGCTTTGACCTCGT 60.604 55.000 0.00 0.00 0.00 4.18
246 247 1.230324 GAGCTTGCTTTGACCTCGTT 58.770 50.000 0.00 0.00 0.00 3.85
247 248 1.604278 GAGCTTGCTTTGACCTCGTTT 59.396 47.619 0.00 0.00 0.00 3.60
248 249 2.024414 AGCTTGCTTTGACCTCGTTTT 58.976 42.857 0.00 0.00 0.00 2.43
249 250 2.033424 AGCTTGCTTTGACCTCGTTTTC 59.967 45.455 0.00 0.00 0.00 2.29
250 251 2.858646 GCTTGCTTTGACCTCGTTTTCC 60.859 50.000 0.00 0.00 0.00 3.13
251 252 1.314730 TGCTTTGACCTCGTTTTCCC 58.685 50.000 0.00 0.00 0.00 3.97
252 253 1.133915 TGCTTTGACCTCGTTTTCCCT 60.134 47.619 0.00 0.00 0.00 4.20
253 254 1.954382 GCTTTGACCTCGTTTTCCCTT 59.046 47.619 0.00 0.00 0.00 3.95
254 255 2.361119 GCTTTGACCTCGTTTTCCCTTT 59.639 45.455 0.00 0.00 0.00 3.11
255 256 3.181479 GCTTTGACCTCGTTTTCCCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
256 257 4.359706 CTTTGACCTCGTTTTCCCTTTTG 58.640 43.478 0.00 0.00 0.00 2.44
257 258 1.679153 TGACCTCGTTTTCCCTTTTGC 59.321 47.619 0.00 0.00 0.00 3.68
258 259 1.954382 GACCTCGTTTTCCCTTTTGCT 59.046 47.619 0.00 0.00 0.00 3.91
259 260 1.954382 ACCTCGTTTTCCCTTTTGCTC 59.046 47.619 0.00 0.00 0.00 4.26
260 261 1.269723 CCTCGTTTTCCCTTTTGCTCC 59.730 52.381 0.00 0.00 0.00 4.70
261 262 0.948678 TCGTTTTCCCTTTTGCTCCG 59.051 50.000 0.00 0.00 0.00 4.63
262 263 0.948678 CGTTTTCCCTTTTGCTCCGA 59.051 50.000 0.00 0.00 0.00 4.55
263 264 1.069227 CGTTTTCCCTTTTGCTCCGAG 60.069 52.381 0.00 0.00 0.00 4.63
264 265 1.269723 GTTTTCCCTTTTGCTCCGAGG 59.730 52.381 0.00 0.00 0.00 4.63
265 266 0.893727 TTTCCCTTTTGCTCCGAGGC 60.894 55.000 0.00 0.00 0.00 4.70
266 267 3.127533 CCCTTTTGCTCCGAGGCG 61.128 66.667 0.00 0.00 34.52 5.52
267 268 2.047274 CCTTTTGCTCCGAGGCGA 60.047 61.111 0.00 0.00 34.52 5.54
268 269 1.450312 CCTTTTGCTCCGAGGCGAT 60.450 57.895 0.00 0.00 34.52 4.58
269 270 1.709147 CCTTTTGCTCCGAGGCGATG 61.709 60.000 0.00 0.00 34.52 3.84
270 271 1.709147 CTTTTGCTCCGAGGCGATGG 61.709 60.000 0.00 0.00 34.52 3.51
271 272 4.838152 TTGCTCCGAGGCGATGGC 62.838 66.667 0.00 0.00 38.90 4.40
283 284 4.451150 GATGGCAGCGTCCACCGA 62.451 66.667 2.03 0.00 39.25 4.69
284 285 4.760047 ATGGCAGCGTCCACCGAC 62.760 66.667 2.03 0.00 39.25 4.79
292 293 3.327404 GTCCACCGACCCACCCAT 61.327 66.667 0.00 0.00 32.40 4.00
293 294 3.006728 TCCACCGACCCACCCATC 61.007 66.667 0.00 0.00 0.00 3.51
294 295 4.109675 CCACCGACCCACCCATCC 62.110 72.222 0.00 0.00 0.00 3.51
295 296 4.109675 CACCGACCCACCCATCCC 62.110 72.222 0.00 0.00 0.00 3.85
296 297 4.667935 ACCGACCCACCCATCCCA 62.668 66.667 0.00 0.00 0.00 4.37
297 298 3.096495 CCGACCCACCCATCCCAT 61.096 66.667 0.00 0.00 0.00 4.00
298 299 2.192979 CGACCCACCCATCCCATG 59.807 66.667 0.00 0.00 0.00 3.66
299 300 2.123726 GACCCACCCATCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
300 301 4.127744 ACCCACCCATCCCATGCG 62.128 66.667 0.00 0.00 0.00 4.73
301 302 3.807839 CCCACCCATCCCATGCGA 61.808 66.667 0.00 0.00 0.00 5.10
302 303 2.517414 CCACCCATCCCATGCGAT 59.483 61.111 0.00 0.00 0.00 4.58
303 304 1.601759 CCACCCATCCCATGCGATC 60.602 63.158 0.00 0.00 0.00 3.69
304 305 1.601759 CACCCATCCCATGCGATCC 60.602 63.158 0.00 0.00 0.00 3.36
305 306 2.359107 CCCATCCCATGCGATCCG 60.359 66.667 0.00 0.00 0.00 4.18
321 322 2.956964 CGCGATCGGTCTCTTGGC 60.957 66.667 18.30 0.00 0.00 4.52
322 323 2.496817 GCGATCGGTCTCTTGGCT 59.503 61.111 18.30 0.00 0.00 4.75
323 324 1.590259 GCGATCGGTCTCTTGGCTC 60.590 63.158 18.30 0.00 0.00 4.70
324 325 1.809869 CGATCGGTCTCTTGGCTCA 59.190 57.895 7.38 0.00 0.00 4.26
333 334 3.244249 GGTCTCTTGGCTCACTGTAAAGT 60.244 47.826 0.00 0.00 0.00 2.66
343 344 4.553547 GCTCACTGTAAAGTTGCTCAGTTG 60.554 45.833 5.49 4.23 38.79 3.16
365 367 2.742372 GGCACACACGCTCCGATT 60.742 61.111 0.00 0.00 0.00 3.34
378 380 2.722094 CTCCGATTGGGTGATTTTGGA 58.278 47.619 0.00 0.00 37.00 3.53
380 382 3.023119 TCCGATTGGGTGATTTTGGATG 58.977 45.455 0.00 0.00 37.00 3.51
429 440 1.891919 GTCGCCAACAGTGCAGGAA 60.892 57.895 5.67 0.00 0.00 3.36
432 443 1.228245 GCCAACAGTGCAGGAAGGA 60.228 57.895 5.67 0.00 0.00 3.36
433 444 1.239968 GCCAACAGTGCAGGAAGGAG 61.240 60.000 5.67 0.00 0.00 3.69
501 530 4.038080 GGCGCCCGGACAAACAAG 62.038 66.667 18.11 0.00 0.00 3.16
502 531 4.700365 GCGCCCGGACAAACAAGC 62.700 66.667 0.73 0.00 0.00 4.01
503 532 4.383602 CGCCCGGACAAACAAGCG 62.384 66.667 0.73 2.27 37.39 4.68
504 533 3.284449 GCCCGGACAAACAAGCGT 61.284 61.111 0.73 0.00 0.00 5.07
505 534 1.962306 GCCCGGACAAACAAGCGTA 60.962 57.895 0.73 0.00 0.00 4.42
506 535 1.864176 CCCGGACAAACAAGCGTAC 59.136 57.895 0.73 0.00 0.00 3.67
507 536 0.881159 CCCGGACAAACAAGCGTACA 60.881 55.000 0.73 0.00 0.00 2.90
508 537 0.233848 CCGGACAAACAAGCGTACAC 59.766 55.000 0.00 0.00 0.00 2.90
522 551 2.934570 TACACGCCCGGACTTGGAC 61.935 63.158 0.73 0.00 0.00 4.02
529 558 3.691342 CGGACTTGGACTCGCCCA 61.691 66.667 0.00 0.00 34.97 5.36
627 675 4.962836 ACACCACCAGGCAGCAGC 62.963 66.667 0.00 0.00 39.06 5.25
628 676 4.960866 CACCACCAGGCAGCAGCA 62.961 66.667 2.65 0.00 44.61 4.41
629 677 4.655647 ACCACCAGGCAGCAGCAG 62.656 66.667 2.65 0.00 44.61 4.24
641 690 4.340246 CAGCAGTCCAGCCCAGCA 62.340 66.667 0.00 0.00 34.23 4.41
642 691 4.341783 AGCAGTCCAGCCCAGCAC 62.342 66.667 0.00 0.00 34.23 4.40
644 693 3.644606 CAGTCCAGCCCAGCACCT 61.645 66.667 0.00 0.00 0.00 4.00
645 694 3.325753 AGTCCAGCCCAGCACCTC 61.326 66.667 0.00 0.00 0.00 3.85
646 695 4.416738 GTCCAGCCCAGCACCTCC 62.417 72.222 0.00 0.00 0.00 4.30
647 696 4.980592 TCCAGCCCAGCACCTCCA 62.981 66.667 0.00 0.00 0.00 3.86
648 697 4.729918 CCAGCCCAGCACCTCCAC 62.730 72.222 0.00 0.00 0.00 4.02
649 698 4.729918 CAGCCCAGCACCTCCACC 62.730 72.222 0.00 0.00 0.00 4.61
689 739 2.372504 TCAGCTAGCTAGGATAGGACGT 59.627 50.000 18.86 0.00 39.70 4.34
690 740 2.486203 CAGCTAGCTAGGATAGGACGTG 59.514 54.545 18.86 0.00 39.70 4.49
692 742 1.813786 CTAGCTAGGATAGGACGTGCC 59.186 57.143 13.32 0.00 39.70 5.01
765 832 1.221840 CGATCCACACCCTTCCCTG 59.778 63.158 0.00 0.00 0.00 4.45
772 839 3.882670 ACCCTTCCCTGTCCCCCA 61.883 66.667 0.00 0.00 0.00 4.96
773 840 3.339093 CCCTTCCCTGTCCCCCAC 61.339 72.222 0.00 0.00 0.00 4.61
796 863 1.032114 CCTCCTGGAAATTCGGCACC 61.032 60.000 0.00 0.00 34.57 5.01
832 900 3.738830 AGCTACCAGTACAAAACACGA 57.261 42.857 0.00 0.00 0.00 4.35
1025 1131 2.034687 CCTGGGGTGGCTCAACAG 59.965 66.667 3.63 3.63 0.00 3.16
1113 1219 3.785122 GACCACCACCACCACCACC 62.785 68.421 0.00 0.00 0.00 4.61
1116 1222 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1452 1570 4.078569 CCCACCCACCCATGCCAT 62.079 66.667 0.00 0.00 0.00 4.40
1479 1597 2.533463 GCCATCCCTCCCTCCATCC 61.533 68.421 0.00 0.00 0.00 3.51
1482 1600 1.073397 ATCCCTCCCTCCATCCACC 60.073 63.158 0.00 0.00 0.00 4.61
1555 1673 4.092237 TCAGTGTCCAATTATTTACGCACG 59.908 41.667 0.00 0.00 0.00 5.34
1578 1696 3.181476 CCCAGTTTTGTCAGAGTTTTGGG 60.181 47.826 0.00 0.00 37.04 4.12
1605 1727 6.018098 GGCATCTGAATGTGACTGAATCTAAG 60.018 42.308 0.00 0.00 35.18 2.18
1629 1751 2.631160 TTTGCTCCGGACAAAGAAGA 57.369 45.000 20.99 6.21 33.30 2.87
1648 1770 8.572855 AAGAAGAATCCCACTTATTTTGAGAG 57.427 34.615 0.00 0.00 0.00 3.20
1705 1827 5.930837 TGTTCAAAATTGTTCCTCTTGGT 57.069 34.783 0.00 0.00 34.23 3.67
1724 1846 3.957535 CCGCTCAATGGCCGATGC 61.958 66.667 0.00 0.00 0.00 3.91
1725 1847 3.204119 CGCTCAATGGCCGATGCA 61.204 61.111 0.00 0.00 40.13 3.96
1729 1851 0.940126 CTCAATGGCCGATGCACTAC 59.060 55.000 0.00 0.00 40.13 2.73
1863 1986 0.321919 AGTGTTCCATCATGCGCACT 60.322 50.000 14.90 0.00 33.05 4.40
1924 2047 6.601741 TTCATGGAAAATTTGTTCAAGTGC 57.398 33.333 0.00 0.00 0.00 4.40
1979 2102 1.039856 TTTTGAGCTGGCAGGGAAAC 58.960 50.000 17.64 0.00 0.00 2.78
1984 2107 2.045926 CTGGCAGGGAAACGAGGG 60.046 66.667 6.61 0.00 0.00 4.30
2057 2184 2.288518 CGGAGGTTAGAGCTTATCTGCC 60.289 54.545 0.00 0.00 39.20 4.85
2072 2199 0.804364 CTGCCAGCATGCGTAGAAAA 59.196 50.000 13.01 0.00 31.97 2.29
2201 2336 9.931210 GGTCAGATTTGGTACTAAATTTTATCG 57.069 33.333 17.13 2.24 30.78 2.92
2291 2426 5.990996 TGATTAAATGAGAGCATACGCATGA 59.009 36.000 0.00 0.00 42.27 3.07
2301 2436 7.657354 TGAGAGCATACGCATGATAGTATTTTT 59.343 33.333 0.00 0.00 42.27 1.94
2380 2515 4.454678 TCTGGCATCTTGAACCATGATAC 58.545 43.478 0.00 0.00 31.79 2.24
2381 2516 4.164796 TCTGGCATCTTGAACCATGATACT 59.835 41.667 0.00 0.00 31.79 2.12
2383 2518 5.368145 TGGCATCTTGAACCATGATACTAC 58.632 41.667 0.00 0.00 29.21 2.73
2388 2524 8.462016 GCATCTTGAACCATGATACTACTTTTT 58.538 33.333 0.00 0.00 29.21 1.94
2418 2554 8.889975 CAAATATATAGACACGTGTACGAGTTC 58.110 37.037 23.44 7.22 42.78 3.01
2419 2555 7.719778 ATATATAGACACGTGTACGAGTTCA 57.280 36.000 23.44 3.52 42.78 3.18
2422 2561 2.615447 AGACACGTGTACGAGTTCAGAA 59.385 45.455 23.44 0.00 42.78 3.02
2531 2670 4.181578 ACCTTACATGTACGTTCAGCATC 58.818 43.478 4.68 0.00 0.00 3.91
2545 2684 4.335400 TCAGCATCGCAGTATCCAATTA 57.665 40.909 0.00 0.00 0.00 1.40
2608 2747 2.949644 GAGGGCAAACCATTACGCTAAT 59.050 45.455 0.00 0.00 43.89 1.73
2609 2748 2.687935 AGGGCAAACCATTACGCTAATG 59.312 45.455 9.45 9.45 43.94 1.90
2610 2749 2.425668 GGGCAAACCATTACGCTAATGT 59.574 45.455 13.21 0.00 43.05 2.71
2686 2828 6.742559 TGTACCTAGAAAAGAAAGGTCAGT 57.257 37.500 0.00 0.00 42.65 3.41
2751 2893 3.001228 TGCTTGCTTACGAATAATCTGCG 59.999 43.478 0.00 0.00 0.00 5.18
2809 2951 9.890085 CTTATGTTTGCGTATTCAAATTTGATG 57.110 29.630 21.10 12.41 38.12 3.07
2825 2967 6.808008 ATTTGATGTTGTTCTACTGACTGG 57.192 37.500 0.00 0.00 0.00 4.00
2947 3090 5.919141 AGACTACTATTTAATGTTAGCGCCG 59.081 40.000 2.29 0.00 0.00 6.46
3070 3213 0.035056 ACAGGGACATAAGCAGTGGC 60.035 55.000 0.00 0.00 41.61 5.01
3093 3236 2.427506 GCAGAAGTACAGTTCCTTGGG 58.572 52.381 0.00 0.00 0.00 4.12
3120 3263 4.846779 TGAGCACCCAAATCTTGTAAAC 57.153 40.909 0.00 0.00 0.00 2.01
3156 3299 0.965363 CCGTTGATGGTGAAAGGGGG 60.965 60.000 0.00 0.00 0.00 5.40
3326 3469 5.488341 GCTGGAACTTCAGGTATACTTCAA 58.512 41.667 2.25 0.00 35.43 2.69
3345 3488 8.356533 ACTTCAAACATCATTGTTCACAATTC 57.643 30.769 2.25 0.00 45.30 2.17
3346 3489 6.989796 TCAAACATCATTGTTCACAATTCG 57.010 33.333 2.25 0.00 45.30 3.34
3352 3495 8.064447 ACATCATTGTTCACAATTCGAAAAAG 57.936 30.769 0.00 0.00 43.48 2.27
3354 3497 8.754096 CATCATTGTTCACAATTCGAAAAAGAA 58.246 29.630 0.00 1.78 43.48 2.52
3359 3502 9.574458 TTGTTCACAATTCGAAAAAGAAACATA 57.426 25.926 0.00 0.79 33.43 2.29
3388 3531 3.372206 CAGCTGTTTGATAGTTCCTTCCG 59.628 47.826 5.25 0.00 0.00 4.30
3429 3572 4.227197 TGCAAAGAAATCCCCTTGGTAAA 58.773 39.130 0.00 0.00 0.00 2.01
3438 3581 6.755542 AATCCCCTTGGTAAATTTTGTGAA 57.244 33.333 0.00 0.00 0.00 3.18
3451 3594 0.665835 TTGTGAATGTCGCAACCCAC 59.334 50.000 0.22 0.00 41.40 4.61
3640 3784 0.713883 AACGACGCGCACTAGAATTG 59.286 50.000 5.73 0.00 0.00 2.32
3648 3792 1.826385 GCACTAGAATTGGCACCACT 58.174 50.000 0.00 0.00 0.00 4.00
3650 3794 3.545703 GCACTAGAATTGGCACCACTAT 58.454 45.455 0.00 0.00 0.00 2.12
3694 4004 6.365520 AGTTTAGTCAAGGACCACAAAATCT 58.634 36.000 0.00 0.00 32.18 2.40
3842 4152 3.782244 GCTTCGACACGCAGCCAG 61.782 66.667 4.68 0.00 39.91 4.85
3862 4172 2.696707 AGCGTATTCGATTTCCCCTACA 59.303 45.455 0.00 0.00 39.71 2.74
3905 4215 0.834687 TCAAGCGTTGGGGGTCTACT 60.835 55.000 0.00 0.00 0.00 2.57
3906 4216 0.899720 CAAGCGTTGGGGGTCTACTA 59.100 55.000 0.00 0.00 0.00 1.82
3933 4243 7.813852 AAGCATAAAGTAGTTAGTGAAGACG 57.186 36.000 0.00 0.00 0.00 4.18
3934 4244 5.805994 AGCATAAAGTAGTTAGTGAAGACGC 59.194 40.000 0.00 0.00 0.00 5.19
3935 4245 5.275788 GCATAAAGTAGTTAGTGAAGACGCG 60.276 44.000 3.53 3.53 0.00 6.01
3936 4246 2.915738 AGTAGTTAGTGAAGACGCGG 57.084 50.000 12.47 0.00 0.00 6.46
3973 4283 6.239148 GGTGAGTATTGAGACATATCAGCTGA 60.239 42.308 20.79 20.79 32.52 4.26
3984 4294 0.548682 ATCAGCTGACAGGGGAAGGT 60.549 55.000 20.97 0.00 0.00 3.50
3985 4295 0.768221 TCAGCTGACAGGGGAAGGTT 60.768 55.000 13.74 0.00 0.00 3.50
3986 4296 0.984230 CAGCTGACAGGGGAAGGTTA 59.016 55.000 8.42 0.00 0.00 2.85
3987 4297 1.065854 CAGCTGACAGGGGAAGGTTAG 60.066 57.143 8.42 0.00 0.00 2.34
4006 4316 8.596781 AGGTTAGTAGTAGTGATCATGACTTT 57.403 34.615 15.31 8.83 0.00 2.66
4176 4489 8.689251 TCTGTTTGTAATCTAATCTGAACTCG 57.311 34.615 0.00 0.00 0.00 4.18
4246 4559 0.250295 TGGACAAGGACTTCCAAGCG 60.250 55.000 0.00 0.00 39.04 4.68
4288 4601 2.612115 AGGGAGGGGCCAACAGAG 60.612 66.667 4.39 0.00 38.95 3.35
4360 4674 9.311916 CCAGATACTAAGAGAAATCTCAAGTTG 57.688 37.037 17.95 12.61 45.21 3.16
4382 4696 1.003262 CGCAACCACATTTTGCCTCG 61.003 55.000 1.66 0.00 45.50 4.63
4429 4744 3.702048 GGTCCACGGCTGCCACTA 61.702 66.667 20.29 0.00 0.00 2.74
4526 4844 2.501650 CCGTTTGTCAATGGCGCG 60.502 61.111 0.00 0.00 32.03 6.86
4532 4850 3.195698 GTCAATGGCGCGTCCCTC 61.196 66.667 8.89 0.00 0.00 4.30
4576 4894 0.865111 TCTGAAACGTGGTTGCATCG 59.135 50.000 0.00 0.00 29.91 3.84
4620 4953 5.611374 AGAACACACACTTGCAACTACTAT 58.389 37.500 0.00 0.00 0.00 2.12
4621 4954 5.466728 AGAACACACACTTGCAACTACTATG 59.533 40.000 0.00 0.00 0.00 2.23
4651 5161 6.704056 TTCTCTCCCCTAAACATTTCTTCT 57.296 37.500 0.00 0.00 0.00 2.85
4770 5280 2.280552 GGGGTGGTGCTGTACGAGA 61.281 63.158 0.00 0.00 0.00 4.04
5213 5738 5.180492 TGTCGGATTGTTGATAGTGTTTTCC 59.820 40.000 0.00 0.00 0.00 3.13
5214 5739 4.698304 TCGGATTGTTGATAGTGTTTTCCC 59.302 41.667 0.00 0.00 0.00 3.97
5215 5740 4.142469 CGGATTGTTGATAGTGTTTTCCCC 60.142 45.833 0.00 0.00 0.00 4.81
5218 5743 4.993705 TGTTGATAGTGTTTTCCCCTCT 57.006 40.909 0.00 0.00 0.00 3.69
5219 5744 5.319043 TGTTGATAGTGTTTTCCCCTCTT 57.681 39.130 0.00 0.00 0.00 2.85
5223 5753 6.200878 TGATAGTGTTTTCCCCTCTTCTTT 57.799 37.500 0.00 0.00 0.00 2.52
5316 5849 1.657804 ACCCTTACCTGTTGGAGGAG 58.342 55.000 0.00 0.00 46.33 3.69
5358 5891 5.878406 ATAGTTGGATAACCCACTCTGAG 57.122 43.478 2.45 2.45 46.62 3.35
5359 5892 3.791320 AGTTGGATAACCCACTCTGAGA 58.209 45.455 12.44 0.00 46.62 3.27
5360 5893 3.772025 AGTTGGATAACCCACTCTGAGAG 59.228 47.826 12.44 8.15 46.62 3.20
5361 5894 2.111384 TGGATAACCCACTCTGAGAGC 58.889 52.381 12.44 0.00 40.82 4.09
5362 5895 2.111384 GGATAACCCACTCTGAGAGCA 58.889 52.381 12.44 0.00 32.04 4.26
5363 5896 2.703007 GGATAACCCACTCTGAGAGCAT 59.297 50.000 12.44 0.00 32.04 3.79
5364 5897 3.244044 GGATAACCCACTCTGAGAGCATC 60.244 52.174 12.44 3.32 32.04 3.91
5365 5898 5.481042 GGATAACCCACTCTGAGAGCATCT 61.481 50.000 12.44 0.00 41.74 2.90
5375 5908 3.084579 GAGCATCTCCAACACGCG 58.915 61.111 3.53 3.53 0.00 6.01
5376 5909 3.088500 GAGCATCTCCAACACGCGC 62.089 63.158 5.73 0.00 0.00 6.86
5377 5910 4.505217 GCATCTCCAACACGCGCG 62.505 66.667 30.96 30.96 0.00 6.86
5378 5911 4.505217 CATCTCCAACACGCGCGC 62.505 66.667 32.58 23.91 0.00 6.86
5381 5914 4.306471 CTCCAACACGCGCGCAAA 62.306 61.111 32.58 8.75 0.00 3.68
5382 5915 4.306471 TCCAACACGCGCGCAAAG 62.306 61.111 32.58 21.54 0.00 2.77
5400 5933 3.293303 GCACGGCGCGTTAAAATAA 57.707 47.368 6.90 0.00 38.32 1.40
5401 5934 0.902526 GCACGGCGCGTTAAAATAAC 59.097 50.000 6.90 0.00 38.32 1.89
5402 5935 1.526646 CACGGCGCGTTAAAATAACC 58.473 50.000 6.90 0.00 38.32 2.85
5403 5936 1.129064 CACGGCGCGTTAAAATAACCT 59.871 47.619 6.90 0.00 38.32 3.50
5404 5937 1.805943 ACGGCGCGTTAAAATAACCTT 59.194 42.857 6.90 0.00 36.35 3.50
5405 5938 2.226200 ACGGCGCGTTAAAATAACCTTT 59.774 40.909 6.90 0.00 36.35 3.11
5406 5939 3.434984 ACGGCGCGTTAAAATAACCTTTA 59.565 39.130 6.90 0.00 36.35 1.85
5407 5940 3.780279 CGGCGCGTTAAAATAACCTTTAC 59.220 43.478 8.43 0.00 0.00 2.01
5408 5941 4.668686 CGGCGCGTTAAAATAACCTTTACA 60.669 41.667 8.43 0.00 0.00 2.41
5409 5942 5.152804 GGCGCGTTAAAATAACCTTTACAA 58.847 37.500 8.43 0.00 0.00 2.41
5410 5943 5.059587 GGCGCGTTAAAATAACCTTTACAAC 59.940 40.000 8.43 0.00 0.00 3.32
5411 5944 5.624491 GCGCGTTAAAATAACCTTTACAACA 59.376 36.000 8.43 0.00 0.00 3.33
5412 5945 6.397790 GCGCGTTAAAATAACCTTTACAACAC 60.398 38.462 8.43 0.00 0.00 3.32
5413 5946 6.086634 CGCGTTAAAATAACCTTTACAACACC 59.913 38.462 0.00 0.00 0.00 4.16
5414 5947 6.086634 GCGTTAAAATAACCTTTACAACACCG 59.913 38.462 0.00 0.00 0.00 4.94
5415 5948 7.351223 CGTTAAAATAACCTTTACAACACCGA 58.649 34.615 0.00 0.00 0.00 4.69
5416 5949 7.854916 CGTTAAAATAACCTTTACAACACCGAA 59.145 33.333 0.00 0.00 0.00 4.30
5417 5950 9.513727 GTTAAAATAACCTTTACAACACCGAAA 57.486 29.630 0.00 0.00 0.00 3.46
5420 5953 9.902196 AAAATAACCTTTACAACACCGAAATAG 57.098 29.630 0.00 0.00 0.00 1.73
5421 5954 5.366829 AACCTTTACAACACCGAAATAGC 57.633 39.130 0.00 0.00 0.00 2.97
5422 5955 4.391155 ACCTTTACAACACCGAAATAGCA 58.609 39.130 0.00 0.00 0.00 3.49
5423 5956 4.822896 ACCTTTACAACACCGAAATAGCAA 59.177 37.500 0.00 0.00 0.00 3.91
5424 5957 5.151389 CCTTTACAACACCGAAATAGCAAC 58.849 41.667 0.00 0.00 0.00 4.17
5489 6022 5.105797 GCAAAGGGAACATCACATGATAACA 60.106 40.000 0.00 0.00 32.63 2.41
5499 6032 8.125978 ACATCACATGATAACAAAAGGTTCAT 57.874 30.769 0.00 0.00 40.96 2.57
5504 6037 7.482743 CACATGATAACAAAAGGTTCATTCGAG 59.517 37.037 0.00 0.00 40.96 4.04
5515 6048 9.613428 AAAAGGTTCATTCGAGTATCATTCATA 57.387 29.630 0.00 0.00 33.17 2.15
5631 6165 5.007682 GGGTCACAAGCTTAAGGTAATCAA 58.992 41.667 7.76 0.00 0.00 2.57
5689 6224 7.223971 CGAGGATTTATTTGTGGAATAGTTCGA 59.776 37.037 0.00 0.00 32.06 3.71
5737 6272 0.942410 CGGAAGCGTTTCGAGGTCAA 60.942 55.000 5.89 0.00 33.98 3.18
5738 6273 1.439679 GGAAGCGTTTCGAGGTCAAT 58.560 50.000 5.89 0.00 33.98 2.57
5739 6274 1.804748 GGAAGCGTTTCGAGGTCAATT 59.195 47.619 5.89 0.00 33.98 2.32
5766 6301 4.036380 GGGTTTCATAGTTTATCGGGCAAG 59.964 45.833 0.00 0.00 0.00 4.01
5818 6356 3.972502 GTGGAAATTATTTACGGCGATGC 59.027 43.478 16.62 0.00 0.00 3.91
5940 6481 1.002011 GAAGGCCCAAGTGGAGGAC 60.002 63.158 0.00 0.00 37.39 3.85
5943 6484 4.329545 GCCCAAGTGGAGGACGCA 62.330 66.667 0.00 0.00 37.39 5.24
5964 6507 2.283894 CCCCCTTTCCTTGTGGGC 60.284 66.667 0.00 0.00 39.61 5.36
6015 6574 4.751431 CCCCAAGGAGGCTTTCTG 57.249 61.111 0.00 0.00 35.39 3.02
6016 6575 1.000396 CCCCAAGGAGGCTTTCTGG 60.000 63.158 0.00 0.00 35.39 3.86
6017 6576 1.000396 CCCAAGGAGGCTTTCTGGG 60.000 63.158 12.62 12.62 35.39 4.45
6018 6577 1.680314 CCAAGGAGGCTTTCTGGGC 60.680 63.158 0.00 0.00 0.00 5.36
6019 6578 1.381851 CAAGGAGGCTTTCTGGGCT 59.618 57.895 0.00 0.00 44.87 5.19
6020 6579 0.620556 CAAGGAGGCTTTCTGGGCTA 59.379 55.000 0.00 0.00 42.23 3.93
6021 6580 0.915364 AAGGAGGCTTTCTGGGCTAG 59.085 55.000 0.00 0.00 42.23 3.42
6022 6581 0.252927 AGGAGGCTTTCTGGGCTAGT 60.253 55.000 0.00 0.00 42.23 2.57
6023 6582 0.621082 GGAGGCTTTCTGGGCTAGTT 59.379 55.000 0.00 0.00 42.23 2.24
6024 6583 1.004862 GGAGGCTTTCTGGGCTAGTTT 59.995 52.381 0.00 0.00 42.23 2.66
6025 6584 2.087646 GAGGCTTTCTGGGCTAGTTTG 58.912 52.381 0.00 0.00 42.23 2.93
6026 6585 1.177401 GGCTTTCTGGGCTAGTTTGG 58.823 55.000 0.00 0.00 0.00 3.28
6027 6586 1.547901 GGCTTTCTGGGCTAGTTTGGT 60.548 52.381 0.00 0.00 0.00 3.67
6028 6587 2.239400 GCTTTCTGGGCTAGTTTGGTT 58.761 47.619 0.00 0.00 0.00 3.67
6029 6588 2.029918 GCTTTCTGGGCTAGTTTGGTTG 60.030 50.000 0.00 0.00 0.00 3.77
6030 6589 2.286365 TTCTGGGCTAGTTTGGTTGG 57.714 50.000 0.00 0.00 0.00 3.77
6031 6590 1.440618 TCTGGGCTAGTTTGGTTGGA 58.559 50.000 0.00 0.00 0.00 3.53
6032 6591 1.351017 TCTGGGCTAGTTTGGTTGGAG 59.649 52.381 0.00 0.00 0.00 3.86
6033 6592 1.073923 CTGGGCTAGTTTGGTTGGAGT 59.926 52.381 0.00 0.00 0.00 3.85
6034 6593 1.073284 TGGGCTAGTTTGGTTGGAGTC 59.927 52.381 0.00 0.00 0.00 3.36
6035 6594 1.613520 GGGCTAGTTTGGTTGGAGTCC 60.614 57.143 0.73 0.73 0.00 3.85
6036 6595 1.073284 GGCTAGTTTGGTTGGAGTCCA 59.927 52.381 8.12 8.12 0.00 4.02
6037 6596 2.152016 GCTAGTTTGGTTGGAGTCCAC 58.848 52.381 12.69 7.28 34.45 4.02
6038 6597 2.486548 GCTAGTTTGGTTGGAGTCCACA 60.487 50.000 12.69 4.65 34.45 4.17
6039 6598 2.052782 AGTTTGGTTGGAGTCCACAC 57.947 50.000 12.69 13.01 36.31 3.82
6040 6599 1.283613 AGTTTGGTTGGAGTCCACACA 59.716 47.619 12.69 11.20 37.89 3.72
6041 6600 2.096248 GTTTGGTTGGAGTCCACACAA 58.904 47.619 12.69 16.70 36.17 3.33
6042 6601 2.494073 GTTTGGTTGGAGTCCACACAAA 59.506 45.455 25.57 25.57 37.18 2.83
6043 6602 2.516227 TGGTTGGAGTCCACACAAAA 57.484 45.000 12.69 0.00 30.78 2.44
6044 6603 2.808919 TGGTTGGAGTCCACACAAAAA 58.191 42.857 12.69 0.00 30.78 1.94
6045 6604 3.370104 TGGTTGGAGTCCACACAAAAAT 58.630 40.909 12.69 0.00 30.78 1.82
6046 6605 3.772025 TGGTTGGAGTCCACACAAAAATT 59.228 39.130 12.69 0.00 30.78 1.82
6047 6606 4.223923 TGGTTGGAGTCCACACAAAAATTT 59.776 37.500 12.69 0.00 30.78 1.82
6048 6607 4.570369 GGTTGGAGTCCACACAAAAATTTG 59.430 41.667 12.69 4.40 37.44 2.32
6049 6608 3.791245 TGGAGTCCACACAAAAATTTGC 58.209 40.909 8.12 0.00 41.79 3.68
6050 6609 3.130633 GGAGTCCACACAAAAATTTGCC 58.869 45.455 3.60 0.00 41.79 4.52
6051 6610 3.181466 GGAGTCCACACAAAAATTTGCCT 60.181 43.478 3.60 0.00 41.79 4.75
6052 6611 3.795877 AGTCCACACAAAAATTTGCCTG 58.204 40.909 5.82 1.13 41.79 4.85
6053 6612 2.287644 GTCCACACAAAAATTTGCCTGC 59.712 45.455 5.82 0.00 41.79 4.85
6054 6613 1.603326 CCACACAAAAATTTGCCTGCC 59.397 47.619 5.82 0.00 41.79 4.85
6055 6614 2.563702 CACACAAAAATTTGCCTGCCT 58.436 42.857 5.82 0.00 41.79 4.75
6056 6615 2.288458 CACACAAAAATTTGCCTGCCTG 59.712 45.455 5.82 0.00 41.79 4.85
6057 6616 2.170187 ACACAAAAATTTGCCTGCCTGA 59.830 40.909 5.82 0.00 41.79 3.86
6058 6617 3.204526 CACAAAAATTTGCCTGCCTGAA 58.795 40.909 5.82 0.00 41.79 3.02
6059 6618 3.249080 CACAAAAATTTGCCTGCCTGAAG 59.751 43.478 5.82 0.00 41.79 3.02
6060 6619 2.174363 AAAATTTGCCTGCCTGAAGC 57.826 45.000 0.00 0.00 44.14 3.86
6061 6620 0.322648 AAATTTGCCTGCCTGAAGCC 59.677 50.000 0.00 0.00 42.71 4.35
6062 6621 0.543646 AATTTGCCTGCCTGAAGCCT 60.544 50.000 0.00 0.00 42.71 4.58
6063 6622 1.255667 ATTTGCCTGCCTGAAGCCTG 61.256 55.000 0.00 0.00 42.71 4.85
6066 6625 4.044439 CCTGCCTGAAGCCTGCCT 62.044 66.667 0.00 0.00 42.71 4.75
6067 6626 2.750637 CTGCCTGAAGCCTGCCTG 60.751 66.667 0.00 0.00 42.71 4.85
6068 6627 3.251509 TGCCTGAAGCCTGCCTGA 61.252 61.111 0.00 0.00 42.71 3.86
6069 6628 2.438075 GCCTGAAGCCTGCCTGAG 60.438 66.667 0.00 0.00 34.35 3.35
6070 6629 2.964310 GCCTGAAGCCTGCCTGAGA 61.964 63.158 0.00 0.00 34.35 3.27
6071 6630 1.221293 CCTGAAGCCTGCCTGAGAG 59.779 63.158 0.00 0.00 0.00 3.20
6072 6631 1.449956 CTGAAGCCTGCCTGAGAGC 60.450 63.158 0.00 0.00 0.00 4.09
6073 6632 2.181445 CTGAAGCCTGCCTGAGAGCA 62.181 60.000 0.00 0.00 41.46 4.26
6074 6633 1.002868 GAAGCCTGCCTGAGAGCAA 60.003 57.895 0.00 0.00 43.52 3.91
6075 6634 1.002379 AAGCCTGCCTGAGAGCAAG 60.002 57.895 0.00 0.00 43.52 4.01
6076 6635 1.486997 AAGCCTGCCTGAGAGCAAGA 61.487 55.000 0.00 0.00 43.52 3.02
6077 6636 1.224039 GCCTGCCTGAGAGCAAGAT 59.776 57.895 0.00 0.00 43.52 2.40
6078 6637 1.096386 GCCTGCCTGAGAGCAAGATG 61.096 60.000 0.00 0.00 43.52 2.90
6079 6638 0.464013 CCTGCCTGAGAGCAAGATGG 60.464 60.000 0.00 0.00 43.52 3.51
6080 6639 0.540454 CTGCCTGAGAGCAAGATGGA 59.460 55.000 0.00 0.00 43.52 3.41
6081 6640 0.986527 TGCCTGAGAGCAAGATGGAA 59.013 50.000 0.00 0.00 40.56 3.53
6082 6641 1.065636 TGCCTGAGAGCAAGATGGAAG 60.066 52.381 0.00 0.00 40.56 3.46
6083 6642 1.746516 GCCTGAGAGCAAGATGGAAGG 60.747 57.143 0.00 0.00 0.00 3.46
6084 6643 1.558756 CCTGAGAGCAAGATGGAAGGT 59.441 52.381 0.00 0.00 0.00 3.50
6085 6644 2.630158 CTGAGAGCAAGATGGAAGGTG 58.370 52.381 0.00 0.00 0.00 4.00
6086 6645 1.980765 TGAGAGCAAGATGGAAGGTGT 59.019 47.619 0.00 0.00 0.00 4.16
6087 6646 2.373169 TGAGAGCAAGATGGAAGGTGTT 59.627 45.455 0.00 0.00 0.00 3.32
6088 6647 3.006247 GAGAGCAAGATGGAAGGTGTTC 58.994 50.000 0.00 0.00 0.00 3.18
6089 6648 1.734465 GAGCAAGATGGAAGGTGTTCG 59.266 52.381 0.00 0.00 32.92 3.95
6090 6649 0.804989 GCAAGATGGAAGGTGTTCGG 59.195 55.000 0.00 0.00 32.92 4.30
6091 6650 1.882352 GCAAGATGGAAGGTGTTCGGT 60.882 52.381 0.00 0.00 32.92 4.69
6092 6651 2.504367 CAAGATGGAAGGTGTTCGGTT 58.496 47.619 0.00 0.00 32.92 4.44
6093 6652 2.474410 AGATGGAAGGTGTTCGGTTC 57.526 50.000 0.00 0.00 32.92 3.62
6094 6653 1.076332 GATGGAAGGTGTTCGGTTCG 58.924 55.000 0.00 0.00 32.92 3.95
6095 6654 0.395312 ATGGAAGGTGTTCGGTTCGT 59.605 50.000 0.00 0.00 32.92 3.85
6096 6655 0.531090 TGGAAGGTGTTCGGTTCGTG 60.531 55.000 0.00 0.00 32.92 4.35
6097 6656 0.531311 GGAAGGTGTTCGGTTCGTGT 60.531 55.000 0.00 0.00 32.92 4.49
6098 6657 0.857287 GAAGGTGTTCGGTTCGTGTC 59.143 55.000 0.00 0.00 0.00 3.67
6099 6658 0.531311 AAGGTGTTCGGTTCGTGTCC 60.531 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.020678 GCACGAGTAAATTGCATAAAACCATC 60.021 38.462 0.00 0.00 36.22 3.51
3 4 5.157781 TGCACGAGTAAATTGCATAAAACC 58.842 37.500 0.00 0.00 41.29 3.27
11 12 0.110419 TGCGTGCACGAGTAAATTGC 60.110 50.000 41.19 20.70 43.02 3.56
12 13 1.591248 GTGCGTGCACGAGTAAATTG 58.409 50.000 41.19 10.87 43.02 2.32
29 30 2.282816 TTCCATGGGTTGCGGGTG 60.283 61.111 13.02 0.00 0.00 4.61
30 31 2.035626 CTTCCATGGGTTGCGGGT 59.964 61.111 13.02 0.00 0.00 5.28
31 32 2.755469 CCTTCCATGGGTTGCGGG 60.755 66.667 13.02 1.78 0.00 6.13
32 33 2.755469 CCCTTCCATGGGTTGCGG 60.755 66.667 13.02 5.39 42.25 5.69
33 34 2.755469 CCCCTTCCATGGGTTGCG 60.755 66.667 13.02 0.00 45.70 4.85
34 35 3.076916 GCCCCTTCCATGGGTTGC 61.077 66.667 13.02 4.44 45.70 4.17
35 36 2.364186 GGCCCCTTCCATGGGTTG 60.364 66.667 13.02 2.18 45.70 3.77
36 37 2.868566 TGGCCCCTTCCATGGGTT 60.869 61.111 13.02 0.00 45.70 4.11
37 38 3.350163 CTGGCCCCTTCCATGGGT 61.350 66.667 13.02 0.00 45.70 4.51
38 39 3.023116 TCTGGCCCCTTCCATGGG 61.023 66.667 13.02 0.00 46.56 4.00
39 40 2.276740 GTCTGGCCCCTTCCATGG 59.723 66.667 4.97 4.97 35.22 3.66
40 41 1.379044 GTGTCTGGCCCCTTCCATG 60.379 63.158 0.00 0.00 35.22 3.66
41 42 2.971598 CGTGTCTGGCCCCTTCCAT 61.972 63.158 0.00 0.00 35.22 3.41
42 43 3.636231 CGTGTCTGGCCCCTTCCA 61.636 66.667 0.00 0.00 34.42 3.53
43 44 4.410400 CCGTGTCTGGCCCCTTCC 62.410 72.222 0.00 0.00 0.00 3.46
44 45 3.319198 TCCGTGTCTGGCCCCTTC 61.319 66.667 0.00 0.00 0.00 3.46
45 46 3.637273 GTCCGTGTCTGGCCCCTT 61.637 66.667 0.00 0.00 0.00 3.95
50 51 4.357947 TGAGCGTCCGTGTCTGGC 62.358 66.667 0.00 0.00 0.00 4.85
51 52 2.430921 GTGAGCGTCCGTGTCTGG 60.431 66.667 0.00 0.00 0.00 3.86
52 53 2.801162 CGTGAGCGTCCGTGTCTG 60.801 66.667 0.00 0.00 0.00 3.51
65 66 2.807967 CAAGATTCACCTCAAAGCGTGA 59.192 45.455 0.00 0.00 37.23 4.35
66 67 2.666619 GCAAGATTCACCTCAAAGCGTG 60.667 50.000 0.00 0.00 0.00 5.34
67 68 1.537202 GCAAGATTCACCTCAAAGCGT 59.463 47.619 0.00 0.00 0.00 5.07
68 69 1.536766 TGCAAGATTCACCTCAAAGCG 59.463 47.619 0.00 0.00 0.00 4.68
69 70 2.670509 GCTGCAAGATTCACCTCAAAGC 60.671 50.000 0.00 0.00 34.07 3.51
70 71 2.413765 CGCTGCAAGATTCACCTCAAAG 60.414 50.000 0.00 0.00 34.07 2.77
71 72 1.536766 CGCTGCAAGATTCACCTCAAA 59.463 47.619 0.00 0.00 34.07 2.69
72 73 1.159285 CGCTGCAAGATTCACCTCAA 58.841 50.000 0.00 0.00 34.07 3.02
73 74 0.035317 ACGCTGCAAGATTCACCTCA 59.965 50.000 0.00 0.00 34.07 3.86
74 75 0.445436 CACGCTGCAAGATTCACCTC 59.555 55.000 0.00 0.00 34.07 3.85
75 76 1.580845 GCACGCTGCAAGATTCACCT 61.581 55.000 0.00 0.00 44.26 4.00
76 77 1.154150 GCACGCTGCAAGATTCACC 60.154 57.895 0.00 0.00 44.26 4.02
77 78 1.510623 CGCACGCTGCAAGATTCAC 60.511 57.895 0.00 0.00 45.36 3.18
78 79 1.227342 TTCGCACGCTGCAAGATTCA 61.227 50.000 0.00 0.00 45.36 2.57
79 80 0.790866 GTTCGCACGCTGCAAGATTC 60.791 55.000 0.00 0.00 45.36 2.52
80 81 1.207593 GTTCGCACGCTGCAAGATT 59.792 52.632 0.00 0.00 45.36 2.40
81 82 2.863153 GTTCGCACGCTGCAAGAT 59.137 55.556 0.00 0.00 45.36 2.40
82 83 3.701530 CGTTCGCACGCTGCAAGA 61.702 61.111 0.00 0.00 45.36 3.02
94 95 0.796870 TCTATGACTGCGTGCGTTCG 60.797 55.000 0.00 0.00 0.00 3.95
95 96 0.640768 GTCTATGACTGCGTGCGTTC 59.359 55.000 0.00 0.00 0.00 3.95
96 97 0.038618 TGTCTATGACTGCGTGCGTT 60.039 50.000 0.00 0.00 33.15 4.84
97 98 0.732880 GTGTCTATGACTGCGTGCGT 60.733 55.000 0.00 0.00 33.15 5.24
98 99 0.732538 TGTGTCTATGACTGCGTGCG 60.733 55.000 0.00 0.00 33.15 5.34
99 100 0.994995 CTGTGTCTATGACTGCGTGC 59.005 55.000 0.00 0.00 33.15 5.34
100 101 1.988467 CACTGTGTCTATGACTGCGTG 59.012 52.381 0.00 0.90 33.15 5.34
101 102 1.067565 CCACTGTGTCTATGACTGCGT 60.068 52.381 7.08 0.00 33.15 5.24
102 103 1.202348 TCCACTGTGTCTATGACTGCG 59.798 52.381 7.08 0.00 33.15 5.18
103 104 3.319137 TTCCACTGTGTCTATGACTGC 57.681 47.619 7.08 0.00 33.15 4.40
104 105 4.081476 TCCATTCCACTGTGTCTATGACTG 60.081 45.833 7.08 1.44 33.15 3.51
105 106 4.096681 TCCATTCCACTGTGTCTATGACT 58.903 43.478 7.08 0.00 33.15 3.41
106 107 4.471904 TCCATTCCACTGTGTCTATGAC 57.528 45.455 7.08 0.00 0.00 3.06
107 108 4.285775 TGTTCCATTCCACTGTGTCTATGA 59.714 41.667 7.08 0.00 0.00 2.15
108 109 4.393062 GTGTTCCATTCCACTGTGTCTATG 59.607 45.833 7.08 6.98 0.00 2.23
109 110 4.041567 TGTGTTCCATTCCACTGTGTCTAT 59.958 41.667 7.08 0.00 32.76 1.98
110 111 3.389656 TGTGTTCCATTCCACTGTGTCTA 59.610 43.478 7.08 0.00 32.76 2.59
111 112 2.172505 TGTGTTCCATTCCACTGTGTCT 59.827 45.455 7.08 0.00 32.76 3.41
112 113 2.290641 GTGTGTTCCATTCCACTGTGTC 59.709 50.000 7.08 0.00 32.76 3.67
113 114 2.297701 GTGTGTTCCATTCCACTGTGT 58.702 47.619 7.08 0.00 32.76 3.72
114 115 1.264020 CGTGTGTTCCATTCCACTGTG 59.736 52.381 0.00 0.00 32.76 3.66
115 116 1.593196 CGTGTGTTCCATTCCACTGT 58.407 50.000 0.00 0.00 32.76 3.55
116 117 0.238289 GCGTGTGTTCCATTCCACTG 59.762 55.000 0.00 0.00 32.76 3.66
117 118 0.179032 TGCGTGTGTTCCATTCCACT 60.179 50.000 0.00 0.00 32.76 4.00
118 119 0.881118 ATGCGTGTGTTCCATTCCAC 59.119 50.000 0.00 0.00 0.00 4.02
119 120 0.880441 CATGCGTGTGTTCCATTCCA 59.120 50.000 0.00 0.00 0.00 3.53
120 121 1.131126 CTCATGCGTGTGTTCCATTCC 59.869 52.381 5.68 0.00 0.00 3.01
121 122 1.131126 CCTCATGCGTGTGTTCCATTC 59.869 52.381 5.68 0.00 0.00 2.67
122 123 1.167851 CCTCATGCGTGTGTTCCATT 58.832 50.000 5.68 0.00 0.00 3.16
123 124 1.308069 GCCTCATGCGTGTGTTCCAT 61.308 55.000 5.68 0.00 0.00 3.41
124 125 1.965930 GCCTCATGCGTGTGTTCCA 60.966 57.895 5.68 0.00 0.00 3.53
125 126 1.308069 ATGCCTCATGCGTGTGTTCC 61.308 55.000 5.68 0.00 45.60 3.62
126 127 2.174334 ATGCCTCATGCGTGTGTTC 58.826 52.632 5.68 0.00 45.60 3.18
127 128 4.402851 ATGCCTCATGCGTGTGTT 57.597 50.000 5.68 0.00 45.60 3.32
132 133 1.450848 CCACTCATGCCTCATGCGT 60.451 57.895 2.12 0.00 45.60 5.24
133 134 1.434622 GACCACTCATGCCTCATGCG 61.435 60.000 2.12 0.00 45.60 4.73
134 135 1.434622 CGACCACTCATGCCTCATGC 61.435 60.000 2.12 0.00 41.18 4.06
135 136 0.812811 CCGACCACTCATGCCTCATG 60.813 60.000 0.59 0.59 42.60 3.07
136 137 0.977627 TCCGACCACTCATGCCTCAT 60.978 55.000 0.00 0.00 0.00 2.90
137 138 1.607801 CTCCGACCACTCATGCCTCA 61.608 60.000 0.00 0.00 0.00 3.86
138 139 1.142748 CTCCGACCACTCATGCCTC 59.857 63.158 0.00 0.00 0.00 4.70
139 140 3.023949 GCTCCGACCACTCATGCCT 62.024 63.158 0.00 0.00 0.00 4.75
140 141 2.512515 GCTCCGACCACTCATGCC 60.513 66.667 0.00 0.00 0.00 4.40
141 142 2.887568 CGCTCCGACCACTCATGC 60.888 66.667 0.00 0.00 0.00 4.06
142 143 1.807165 CACGCTCCGACCACTCATG 60.807 63.158 0.00 0.00 0.00 3.07
143 144 2.573869 CACGCTCCGACCACTCAT 59.426 61.111 0.00 0.00 0.00 2.90
144 145 3.680786 CCACGCTCCGACCACTCA 61.681 66.667 0.00 0.00 0.00 3.41
145 146 3.681835 ACCACGCTCCGACCACTC 61.682 66.667 0.00 0.00 0.00 3.51
146 147 3.991051 CACCACGCTCCGACCACT 61.991 66.667 0.00 0.00 0.00 4.00
147 148 3.986006 TCACCACGCTCCGACCAC 61.986 66.667 0.00 0.00 0.00 4.16
148 149 3.986006 GTCACCACGCTCCGACCA 61.986 66.667 0.00 0.00 0.00 4.02
154 155 4.760047 ATGCCCGTCACCACGCTC 62.760 66.667 0.00 0.00 45.29 5.03
155 156 4.760047 GATGCCCGTCACCACGCT 62.760 66.667 0.00 0.00 45.29 5.07
202 203 4.767255 CCTGCCTGCCTCGTGGTC 62.767 72.222 5.26 0.00 35.27 4.02
220 221 2.674380 AAAGCAAGCTCCGGCCTG 60.674 61.111 0.00 0.00 39.73 4.85
221 222 2.674380 CAAAGCAAGCTCCGGCCT 60.674 61.111 0.00 0.00 39.73 5.19
222 223 2.672996 TCAAAGCAAGCTCCGGCC 60.673 61.111 0.00 0.00 39.73 6.13
223 224 2.563427 GTCAAAGCAAGCTCCGGC 59.437 61.111 0.00 0.00 39.06 6.13
224 225 1.301677 GAGGTCAAAGCAAGCTCCGG 61.302 60.000 0.00 0.00 35.68 5.14
225 226 1.630244 CGAGGTCAAAGCAAGCTCCG 61.630 60.000 0.00 0.00 37.86 4.63
226 227 0.603975 ACGAGGTCAAAGCAAGCTCC 60.604 55.000 0.00 0.00 37.86 4.70
227 228 1.230324 AACGAGGTCAAAGCAAGCTC 58.770 50.000 0.00 0.00 37.79 4.09
228 229 1.680338 AAACGAGGTCAAAGCAAGCT 58.320 45.000 0.00 0.00 0.00 3.74
229 230 2.385315 GAAAACGAGGTCAAAGCAAGC 58.615 47.619 0.00 0.00 0.00 4.01
230 231 2.287608 GGGAAAACGAGGTCAAAGCAAG 60.288 50.000 0.00 0.00 0.00 4.01
231 232 1.679153 GGGAAAACGAGGTCAAAGCAA 59.321 47.619 0.00 0.00 0.00 3.91
232 233 1.133915 AGGGAAAACGAGGTCAAAGCA 60.134 47.619 0.00 0.00 0.00 3.91
233 234 1.605753 AGGGAAAACGAGGTCAAAGC 58.394 50.000 0.00 0.00 0.00 3.51
234 235 4.359706 CAAAAGGGAAAACGAGGTCAAAG 58.640 43.478 0.00 0.00 0.00 2.77
235 236 3.429684 GCAAAAGGGAAAACGAGGTCAAA 60.430 43.478 0.00 0.00 0.00 2.69
236 237 2.100087 GCAAAAGGGAAAACGAGGTCAA 59.900 45.455 0.00 0.00 0.00 3.18
237 238 1.679153 GCAAAAGGGAAAACGAGGTCA 59.321 47.619 0.00 0.00 0.00 4.02
238 239 1.954382 AGCAAAAGGGAAAACGAGGTC 59.046 47.619 0.00 0.00 0.00 3.85
239 240 1.954382 GAGCAAAAGGGAAAACGAGGT 59.046 47.619 0.00 0.00 0.00 3.85
240 241 1.269723 GGAGCAAAAGGGAAAACGAGG 59.730 52.381 0.00 0.00 0.00 4.63
241 242 1.069227 CGGAGCAAAAGGGAAAACGAG 60.069 52.381 0.00 0.00 0.00 4.18
242 243 0.948678 CGGAGCAAAAGGGAAAACGA 59.051 50.000 0.00 0.00 0.00 3.85
243 244 0.948678 TCGGAGCAAAAGGGAAAACG 59.051 50.000 0.00 0.00 0.00 3.60
244 245 1.269723 CCTCGGAGCAAAAGGGAAAAC 59.730 52.381 0.00 0.00 0.00 2.43
245 246 1.616159 CCTCGGAGCAAAAGGGAAAA 58.384 50.000 0.00 0.00 0.00 2.29
246 247 0.893727 GCCTCGGAGCAAAAGGGAAA 60.894 55.000 0.00 0.00 0.00 3.13
247 248 1.303317 GCCTCGGAGCAAAAGGGAA 60.303 57.895 0.00 0.00 0.00 3.97
248 249 2.351276 GCCTCGGAGCAAAAGGGA 59.649 61.111 0.00 0.00 0.00 4.20
249 250 2.876368 ATCGCCTCGGAGCAAAAGGG 62.876 60.000 0.00 0.00 0.00 3.95
250 251 1.450312 ATCGCCTCGGAGCAAAAGG 60.450 57.895 0.00 0.00 0.00 3.11
251 252 1.709147 CCATCGCCTCGGAGCAAAAG 61.709 60.000 0.00 0.00 0.00 2.27
252 253 1.745115 CCATCGCCTCGGAGCAAAA 60.745 57.895 0.00 0.00 0.00 2.44
253 254 2.125147 CCATCGCCTCGGAGCAAA 60.125 61.111 0.00 0.00 0.00 3.68
254 255 4.838152 GCCATCGCCTCGGAGCAA 62.838 66.667 0.00 0.00 0.00 3.91
266 267 4.451150 TCGGTGGACGCTGCCATC 62.451 66.667 0.00 0.00 43.86 3.51
267 268 4.760047 GTCGGTGGACGCTGCCAT 62.760 66.667 0.00 0.00 43.86 4.40
275 276 3.325201 GATGGGTGGGTCGGTGGAC 62.325 68.421 0.00 0.00 42.66 4.02
276 277 3.006728 GATGGGTGGGTCGGTGGA 61.007 66.667 0.00 0.00 0.00 4.02
277 278 4.109675 GGATGGGTGGGTCGGTGG 62.110 72.222 0.00 0.00 0.00 4.61
278 279 4.109675 GGGATGGGTGGGTCGGTG 62.110 72.222 0.00 0.00 0.00 4.94
279 280 3.962530 ATGGGATGGGTGGGTCGGT 62.963 63.158 0.00 0.00 0.00 4.69
280 281 3.096495 ATGGGATGGGTGGGTCGG 61.096 66.667 0.00 0.00 0.00 4.79
281 282 2.192979 CATGGGATGGGTGGGTCG 59.807 66.667 0.00 0.00 0.00 4.79
282 283 2.123726 GCATGGGATGGGTGGGTC 60.124 66.667 0.00 0.00 0.00 4.46
283 284 4.127744 CGCATGGGATGGGTGGGT 62.128 66.667 3.11 0.00 38.30 4.51
284 285 3.137385 ATCGCATGGGATGGGTGGG 62.137 63.158 23.17 0.00 43.04 4.61
285 286 1.601759 GATCGCATGGGATGGGTGG 60.602 63.158 28.03 0.00 43.04 4.61
286 287 1.601759 GGATCGCATGGGATGGGTG 60.602 63.158 28.03 0.00 43.04 4.61
287 288 2.839098 GGATCGCATGGGATGGGT 59.161 61.111 28.03 6.65 43.04 4.51
288 289 2.359107 CGGATCGCATGGGATGGG 60.359 66.667 28.03 15.77 43.79 4.00
304 305 2.956964 GCCAAGAGACCGATCGCG 60.957 66.667 10.32 0.00 37.24 5.87
305 306 1.590259 GAGCCAAGAGACCGATCGC 60.590 63.158 10.32 0.00 0.00 4.58
306 307 0.526524 GTGAGCCAAGAGACCGATCG 60.527 60.000 8.51 8.51 0.00 3.69
307 308 0.820871 AGTGAGCCAAGAGACCGATC 59.179 55.000 0.00 0.00 0.00 3.69
308 309 0.534412 CAGTGAGCCAAGAGACCGAT 59.466 55.000 0.00 0.00 0.00 4.18
309 310 0.827925 ACAGTGAGCCAAGAGACCGA 60.828 55.000 0.00 0.00 0.00 4.69
310 311 0.888619 TACAGTGAGCCAAGAGACCG 59.111 55.000 0.00 0.00 0.00 4.79
311 312 3.244249 ACTTTACAGTGAGCCAAGAGACC 60.244 47.826 0.00 0.00 0.00 3.85
312 313 3.996480 ACTTTACAGTGAGCCAAGAGAC 58.004 45.455 0.00 0.00 0.00 3.36
313 314 4.380531 CAACTTTACAGTGAGCCAAGAGA 58.619 43.478 0.00 0.00 31.60 3.10
314 315 3.058639 GCAACTTTACAGTGAGCCAAGAG 60.059 47.826 0.00 0.00 31.60 2.85
315 316 2.878406 GCAACTTTACAGTGAGCCAAGA 59.122 45.455 0.00 0.00 31.60 3.02
316 317 2.880890 AGCAACTTTACAGTGAGCCAAG 59.119 45.455 0.00 0.00 36.14 3.61
317 318 2.878406 GAGCAACTTTACAGTGAGCCAA 59.122 45.455 0.00 0.00 36.14 4.52
318 319 2.158827 TGAGCAACTTTACAGTGAGCCA 60.159 45.455 0.00 0.72 36.14 4.75
319 320 2.481952 CTGAGCAACTTTACAGTGAGCC 59.518 50.000 0.00 0.00 36.14 4.70
320 321 3.134458 ACTGAGCAACTTTACAGTGAGC 58.866 45.455 0.00 0.00 41.16 4.26
321 322 4.024556 CCAACTGAGCAACTTTACAGTGAG 60.025 45.833 0.00 0.00 41.73 3.51
322 323 3.876914 CCAACTGAGCAACTTTACAGTGA 59.123 43.478 0.00 0.00 41.73 3.41
323 324 3.003689 CCCAACTGAGCAACTTTACAGTG 59.996 47.826 0.00 0.00 41.73 3.66
324 325 3.214328 CCCAACTGAGCAACTTTACAGT 58.786 45.455 0.00 0.00 43.92 3.55
350 352 2.390599 CCCAATCGGAGCGTGTGTG 61.391 63.158 0.00 0.00 0.00 3.82
361 363 3.443329 TGACATCCAAAATCACCCAATCG 59.557 43.478 0.00 0.00 0.00 3.34
365 367 2.170166 GCTGACATCCAAAATCACCCA 58.830 47.619 0.00 0.00 0.00 4.51
410 412 2.591429 CCTGCACTGTTGGCGACA 60.591 61.111 7.47 7.47 39.83 4.35
424 435 0.390472 GCGTTCTCACCTCCTTCCTG 60.390 60.000 0.00 0.00 0.00 3.86
429 440 2.282958 TCCGCGTTCTCACCTCCT 60.283 61.111 4.92 0.00 0.00 3.69
432 443 3.288308 CTGCTCCGCGTTCTCACCT 62.288 63.158 4.92 0.00 0.00 4.00
433 444 2.765250 TTCTGCTCCGCGTTCTCACC 62.765 60.000 4.92 0.00 0.00 4.02
485 514 4.700365 GCTTGTTTGTCCGGGCGC 62.700 66.667 0.00 0.00 0.00 6.53
487 516 1.962306 TACGCTTGTTTGTCCGGGC 60.962 57.895 0.00 0.00 0.00 6.13
488 517 0.881159 TGTACGCTTGTTTGTCCGGG 60.881 55.000 0.00 0.00 0.00 5.73
489 518 0.233848 GTGTACGCTTGTTTGTCCGG 59.766 55.000 0.00 0.00 0.00 5.14
490 519 0.111442 CGTGTACGCTTGTTTGTCCG 60.111 55.000 4.67 0.00 0.00 4.79
491 520 3.721466 CGTGTACGCTTGTTTGTCC 57.279 52.632 4.67 0.00 0.00 4.02
502 531 2.807895 CAAGTCCGGGCGTGTACG 60.808 66.667 14.30 0.00 43.27 3.67
503 532 2.433664 CCAAGTCCGGGCGTGTAC 60.434 66.667 20.62 0.42 0.00 2.90
504 533 2.601067 TCCAAGTCCGGGCGTGTA 60.601 61.111 20.62 1.41 0.00 2.90
505 534 4.309950 GTCCAAGTCCGGGCGTGT 62.310 66.667 20.62 0.00 0.00 4.49
506 535 3.934391 GAGTCCAAGTCCGGGCGTG 62.934 68.421 15.61 15.61 35.10 5.34
507 536 3.692406 GAGTCCAAGTCCGGGCGT 61.692 66.667 0.00 0.00 35.10 5.68
508 537 4.796231 CGAGTCCAAGTCCGGGCG 62.796 72.222 0.00 0.00 35.10 6.13
515 544 2.584391 GGTCTGGGCGAGTCCAAGT 61.584 63.158 7.84 0.00 37.18 3.16
567 600 3.551887 CTTTTGTGCGGAACCGGGC 62.552 63.158 15.01 0.00 40.19 6.13
613 655 4.655647 ACTGCTGCTGCCTGGTGG 62.656 66.667 13.47 0.00 38.71 4.61
616 658 4.340246 TGGACTGCTGCTGCCTGG 62.340 66.667 13.47 6.00 38.71 4.45
627 675 3.618780 GAGGTGCTGGGCTGGACTG 62.619 68.421 3.42 0.00 0.00 3.51
628 676 3.325753 GAGGTGCTGGGCTGGACT 61.326 66.667 3.42 0.00 0.00 3.85
629 677 4.416738 GGAGGTGCTGGGCTGGAC 62.417 72.222 0.00 0.00 0.00 4.02
640 689 4.394712 GAGGTGGCGGTGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
752 819 2.757077 GGGACAGGGAAGGGTGTG 59.243 66.667 0.00 0.00 0.00 3.82
796 863 0.753262 AGCTATAGGGCGGTGTGAAG 59.247 55.000 1.04 0.00 37.29 3.02
832 900 2.282745 GTGCAAGGAAGGCTGGCT 60.283 61.111 0.00 0.00 0.00 4.75
983 1063 2.115911 ATCTCTCGGCGCGTTCTCT 61.116 57.895 8.43 0.00 0.00 3.10
1023 1129 3.083997 CCGGACCCCTTCCTCCTG 61.084 72.222 0.00 0.00 43.25 3.86
1025 1131 4.410033 TCCCGGACCCCTTCCTCC 62.410 72.222 0.73 0.00 43.25 4.30
1479 1597 2.602878 ACTGTACGTAATTCGCTGGTG 58.397 47.619 0.00 0.00 44.19 4.17
1482 1600 5.004156 GGAAACTACTGTACGTAATTCGCTG 59.996 44.000 0.00 0.00 44.19 5.18
1555 1673 3.447742 CAAAACTCTGACAAAACTGGGC 58.552 45.455 0.00 0.00 0.00 5.36
1578 1696 1.065199 TCAGTCACATTCAGATGCCCC 60.065 52.381 0.00 0.00 36.72 5.80
1586 1704 8.868522 AATTTCCTTAGATTCAGTCACATTCA 57.131 30.769 0.00 0.00 0.00 2.57
1605 1727 2.556622 TCTTTGTCCGGAGCAAATTTCC 59.443 45.455 23.43 4.69 0.00 3.13
1629 1751 7.839680 ACAAACTCTCAAAATAAGTGGGATT 57.160 32.000 0.00 0.00 0.00 3.01
1705 1827 1.227527 CATCGGCCATTGAGCGGTA 60.228 57.895 2.24 0.00 34.87 4.02
1724 1846 1.890894 CTGGTCGTCCCCAGTAGTG 59.109 63.158 9.45 0.00 45.81 2.74
1725 1847 4.436368 CTGGTCGTCCCCAGTAGT 57.564 61.111 9.45 0.00 45.81 2.73
1785 1908 6.876257 GCACATAAATACAATTTTTGGGTGGA 59.124 34.615 6.84 0.00 34.12 4.02
1787 1910 7.517321 GTGCACATAAATACAATTTTTGGGTG 58.483 34.615 13.17 0.00 34.12 4.61
1788 1911 6.367422 CGTGCACATAAATACAATTTTTGGGT 59.633 34.615 18.64 0.00 34.12 4.51
1822 1945 2.433604 TGGTCAAATTTGGCAAGAGCAA 59.566 40.909 23.34 0.00 44.61 3.91
1863 1986 0.803117 CACTTCTAGTCGGCGACTCA 59.197 55.000 42.01 28.05 42.40 3.41
1913 2036 1.606668 GGATCAACCGCACTTGAACAA 59.393 47.619 0.00 0.00 33.85 2.83
1934 2057 4.675408 GCCTAATGTGCCTTTGCTTTCTAC 60.675 45.833 0.00 0.00 38.71 2.59
1979 2102 0.328258 AACCCAGAAATGTCCCCTCG 59.672 55.000 0.00 0.00 0.00 4.63
1984 2107 2.365293 ACTTTGCAACCCAGAAATGTCC 59.635 45.455 0.00 0.00 0.00 4.02
2078 2205 5.833667 CCTCCCTTTTTCCTAACAAACTTCT 59.166 40.000 0.00 0.00 0.00 2.85
2274 2409 4.797800 ACTATCATGCGTATGCTCTCAT 57.202 40.909 8.81 0.00 43.34 2.90
2301 2436 7.930325 TGTCAGCATTTGTTTTTGATGGATAAA 59.070 29.630 0.00 0.00 30.45 1.40
2303 2438 6.990798 TGTCAGCATTTGTTTTTGATGGATA 58.009 32.000 0.00 0.00 30.45 2.59
2304 2439 5.856156 TGTCAGCATTTGTTTTTGATGGAT 58.144 33.333 0.00 0.00 30.45 3.41
2305 2440 5.068855 TCTGTCAGCATTTGTTTTTGATGGA 59.931 36.000 0.00 0.00 30.45 3.41
2309 2444 5.291178 CCATCTGTCAGCATTTGTTTTTGA 58.709 37.500 0.00 0.00 0.00 2.69
2310 2445 4.449743 CCCATCTGTCAGCATTTGTTTTTG 59.550 41.667 0.00 0.00 0.00 2.44
2388 2524 9.786105 TCGTACACGTGTCTATATATTTGAAAA 57.214 29.630 27.16 0.00 40.80 2.29
2531 2670 2.254546 TGGGCTAATTGGATACTGCG 57.745 50.000 0.00 0.00 37.61 5.18
2545 2684 2.893489 GTTTGTCTCCTTTGATTGGGCT 59.107 45.455 0.00 0.00 0.00 5.19
2608 2747 4.941263 AGTCAACTAAGAACAGCAACAACA 59.059 37.500 0.00 0.00 0.00 3.33
2609 2748 5.485662 AGTCAACTAAGAACAGCAACAAC 57.514 39.130 0.00 0.00 0.00 3.32
2610 2749 6.346096 AGTAGTCAACTAAGAACAGCAACAA 58.654 36.000 0.00 0.00 36.36 2.83
2725 2867 6.489675 CAGATTATTCGTAAGCAAGCAATGT 58.510 36.000 0.00 0.00 37.18 2.71
2809 2951 2.841442 AGCCCAGTCAGTAGAACAAC 57.159 50.000 0.00 0.00 0.00 3.32
2825 2967 2.351455 GTCAAGGAAGAAGCAGTAGCC 58.649 52.381 0.00 0.00 43.56 3.93
2947 3090 6.370593 TGACGAGCAATTAAGAAAATGTCAC 58.629 36.000 0.00 0.00 0.00 3.67
3041 3184 4.156008 GCTTATGTCCCTGTCACGAAAAAT 59.844 41.667 0.00 0.00 0.00 1.82
3048 3191 2.350522 CACTGCTTATGTCCCTGTCAC 58.649 52.381 0.00 0.00 0.00 3.67
3070 3213 3.070018 CAAGGAACTGTACTTCTGCCAG 58.930 50.000 0.00 0.00 40.86 4.85
3093 3236 2.519013 AGATTTGGGTGCTCAAGAACC 58.481 47.619 0.00 0.00 43.36 3.62
3156 3299 2.808906 AGACCAGTAATCTTTGGGCC 57.191 50.000 0.00 0.00 43.94 5.80
3359 3502 6.491403 AGGAACTATCAAACAGCTGAACAATT 59.509 34.615 23.35 0.00 36.02 2.32
3429 3572 2.363680 TGGGTTGCGACATTCACAAAAT 59.636 40.909 6.39 0.00 0.00 1.82
3451 3594 2.821366 CTGGTGCAGCTTAGCGGG 60.821 66.667 18.08 0.40 37.31 6.13
3611 3754 2.505557 GCGTCGTTGACCCCTACG 60.506 66.667 0.00 0.00 41.60 3.51
3640 3784 1.671054 ACACGTGCATAGTGGTGCC 60.671 57.895 23.16 0.00 44.43 5.01
3648 3792 2.495669 TCAGGAATCTCACACGTGCATA 59.504 45.455 17.22 0.00 0.00 3.14
3650 3794 0.678950 TCAGGAATCTCACACGTGCA 59.321 50.000 17.22 0.81 0.00 4.57
3653 3797 3.753294 AACTTCAGGAATCTCACACGT 57.247 42.857 0.00 0.00 0.00 4.49
3694 4004 5.648092 GCTTTCTTAGCCTATCCAACTTCAA 59.352 40.000 0.00 0.00 44.48 2.69
3842 4152 3.102052 TGTAGGGGAAATCGAATACGC 57.898 47.619 0.00 0.00 39.58 4.42
3862 4172 0.983378 ACAGCCCCGCTAGGAGAAAT 60.983 55.000 0.00 0.00 36.40 2.17
3927 4237 1.935933 ACCATATGAACCGCGTCTTC 58.064 50.000 4.92 6.07 0.00 2.87
3933 4243 1.670811 CTCACCAACCATATGAACCGC 59.329 52.381 3.65 0.00 0.00 5.68
3934 4244 2.985896 ACTCACCAACCATATGAACCG 58.014 47.619 3.65 0.00 0.00 4.44
3935 4245 6.119536 TCAATACTCACCAACCATATGAACC 58.880 40.000 3.65 0.00 0.00 3.62
3936 4246 7.011482 GTCTCAATACTCACCAACCATATGAAC 59.989 40.741 3.65 0.00 0.00 3.18
3973 4283 4.045079 TCACTACTACTAACCTTCCCCTGT 59.955 45.833 0.00 0.00 0.00 4.00
4006 4316 1.913419 ACGAAGGGCCTGAGGAAATTA 59.087 47.619 6.92 0.00 0.00 1.40
4012 4322 0.108138 CACTAACGAAGGGCCTGAGG 60.108 60.000 6.92 1.29 0.00 3.86
4151 4464 8.304596 ACGAGTTCAGATTAGATTACAAACAGA 58.695 33.333 0.00 0.00 0.00 3.41
4154 4467 8.587950 CAGACGAGTTCAGATTAGATTACAAAC 58.412 37.037 0.00 0.00 0.00 2.93
4160 4473 7.360438 GCAAAACAGACGAGTTCAGATTAGATT 60.360 37.037 0.00 0.00 0.00 2.40
4176 4489 4.870991 GGTAGATCACCTAGCAAAACAGAC 59.129 45.833 0.00 0.00 44.79 3.51
4246 4559 3.202097 GAGCCCAAAGTCTGATAGCTTC 58.798 50.000 0.00 0.00 0.00 3.86
4288 4601 2.039084 AGTTGAGACATGAGTGTTCCCC 59.961 50.000 0.00 0.00 39.09 4.81
4328 4641 8.017418 AGATTTCTCTTAGTATCTGGGTCAAG 57.983 38.462 0.00 0.00 0.00 3.02
4360 4674 1.564139 GCAAAATGTGGTTGCGTGC 59.436 52.632 0.00 0.00 41.74 5.34
4382 4696 0.671251 TGGTGAAACGCCAAATGGTC 59.329 50.000 1.37 0.00 41.39 4.02
4428 4743 3.275143 CCACGGGTCAGCAACATTTATA 58.725 45.455 0.00 0.00 0.00 0.98
4429 4744 2.091541 CCACGGGTCAGCAACATTTAT 58.908 47.619 0.00 0.00 0.00 1.40
4526 4844 3.438434 GTCAAATGCAGAAGAAGAGGGAC 59.562 47.826 0.00 0.00 0.00 4.46
4532 4850 5.936686 TTCAGAGTCAAATGCAGAAGAAG 57.063 39.130 0.00 0.00 0.00 2.85
4647 5157 5.123502 CCTGATCACCACATGAAAAGAGAAG 59.876 44.000 0.00 0.00 41.93 2.85
4648 5158 5.005740 CCTGATCACCACATGAAAAGAGAA 58.994 41.667 0.00 0.00 41.93 2.87
4649 5159 4.582869 CCTGATCACCACATGAAAAGAGA 58.417 43.478 0.00 0.00 41.93 3.10
4650 5160 3.128242 GCCTGATCACCACATGAAAAGAG 59.872 47.826 0.00 0.00 41.93 2.85
4651 5161 3.084039 GCCTGATCACCACATGAAAAGA 58.916 45.455 0.00 0.00 41.93 2.52
5163 5686 6.947733 ACCCAAATCATCTAAACTCATGTTGA 59.052 34.615 0.00 0.00 36.39 3.18
5164 5687 7.161773 ACCCAAATCATCTAAACTCATGTTG 57.838 36.000 0.00 0.00 36.39 3.33
5215 5740 5.002516 ACTCAAATGAGCCTCAAAGAAGAG 58.997 41.667 10.28 5.14 45.79 2.85
5218 5743 4.717877 TCACTCAAATGAGCCTCAAAGAA 58.282 39.130 10.28 0.00 45.79 2.52
5219 5744 4.356405 TCACTCAAATGAGCCTCAAAGA 57.644 40.909 10.28 0.00 45.79 2.52
5223 5753 4.356405 TTCTTCACTCAAATGAGCCTCA 57.644 40.909 10.28 0.00 45.79 3.86
5316 5849 8.759641 CAACTATTGAACTATATGAGCAGTGAC 58.240 37.037 0.00 0.00 0.00 3.67
5347 5880 1.484038 GAGATGCTCTCAGAGTGGGT 58.516 55.000 2.93 0.00 42.90 4.51
5358 5891 3.084579 CGCGTGTTGGAGATGCTC 58.915 61.111 0.00 0.00 0.00 4.26
5359 5892 3.121030 GCGCGTGTTGGAGATGCT 61.121 61.111 8.43 0.00 0.00 3.79
5360 5893 4.505217 CGCGCGTGTTGGAGATGC 62.505 66.667 24.19 0.00 0.00 3.91
5361 5894 4.505217 GCGCGCGTGTTGGAGATG 62.505 66.667 32.35 0.00 0.00 2.90
5364 5897 4.306471 TTTGCGCGCGTGTTGGAG 62.306 61.111 32.35 0.04 0.00 3.86
5365 5898 4.306471 CTTTGCGCGCGTGTTGGA 62.306 61.111 32.35 3.19 0.00 3.53
5377 5910 3.865502 TTAACGCGCCGTGCTTTGC 62.866 57.895 5.73 0.00 39.99 3.68
5378 5911 0.930742 TTTTAACGCGCCGTGCTTTG 60.931 50.000 5.73 0.00 39.99 2.77
5379 5912 0.039888 ATTTTAACGCGCCGTGCTTT 60.040 45.000 5.73 1.40 39.99 3.51
5380 5913 0.797542 TATTTTAACGCGCCGTGCTT 59.202 45.000 5.73 0.00 39.99 3.91
5381 5914 0.797542 TTATTTTAACGCGCCGTGCT 59.202 45.000 5.73 0.00 39.99 4.40
5382 5915 0.902526 GTTATTTTAACGCGCCGTGC 59.097 50.000 5.73 0.00 39.99 5.34
5383 5916 1.129064 AGGTTATTTTAACGCGCCGTG 59.871 47.619 5.73 0.00 39.99 4.94
5384 5917 1.441738 AGGTTATTTTAACGCGCCGT 58.558 45.000 5.73 0.00 43.97 5.68
5385 5918 2.530832 AAGGTTATTTTAACGCGCCG 57.469 45.000 5.73 0.00 0.00 6.46
5386 5919 4.721142 TGTAAAGGTTATTTTAACGCGCC 58.279 39.130 5.73 0.00 0.00 6.53
5387 5920 5.624491 TGTTGTAAAGGTTATTTTAACGCGC 59.376 36.000 5.73 0.00 0.00 6.86
5388 5921 6.086634 GGTGTTGTAAAGGTTATTTTAACGCG 59.913 38.462 3.53 3.53 0.00 6.01
5389 5922 6.086634 CGGTGTTGTAAAGGTTATTTTAACGC 59.913 38.462 0.00 0.00 0.00 4.84
5390 5923 7.351223 TCGGTGTTGTAAAGGTTATTTTAACG 58.649 34.615 0.00 0.00 0.00 3.18
5391 5924 9.513727 TTTCGGTGTTGTAAAGGTTATTTTAAC 57.486 29.630 0.00 0.00 0.00 2.01
5394 5927 9.902196 CTATTTCGGTGTTGTAAAGGTTATTTT 57.098 29.630 0.00 0.00 0.00 1.82
5395 5928 8.024865 GCTATTTCGGTGTTGTAAAGGTTATTT 58.975 33.333 0.00 0.00 0.00 1.40
5396 5929 7.175293 TGCTATTTCGGTGTTGTAAAGGTTATT 59.825 33.333 0.00 0.00 0.00 1.40
5397 5930 6.655848 TGCTATTTCGGTGTTGTAAAGGTTAT 59.344 34.615 0.00 0.00 0.00 1.89
5398 5931 5.996513 TGCTATTTCGGTGTTGTAAAGGTTA 59.003 36.000 0.00 0.00 0.00 2.85
5399 5932 4.822896 TGCTATTTCGGTGTTGTAAAGGTT 59.177 37.500 0.00 0.00 0.00 3.50
5400 5933 4.391155 TGCTATTTCGGTGTTGTAAAGGT 58.609 39.130 0.00 0.00 0.00 3.50
5401 5934 5.151389 GTTGCTATTTCGGTGTTGTAAAGG 58.849 41.667 0.00 0.00 0.00 3.11
5402 5935 5.623673 GTGTTGCTATTTCGGTGTTGTAAAG 59.376 40.000 0.00 0.00 0.00 1.85
5403 5936 5.505985 GGTGTTGCTATTTCGGTGTTGTAAA 60.506 40.000 0.00 0.00 0.00 2.01
5404 5937 4.023878 GGTGTTGCTATTTCGGTGTTGTAA 60.024 41.667 0.00 0.00 0.00 2.41
5405 5938 3.499157 GGTGTTGCTATTTCGGTGTTGTA 59.501 43.478 0.00 0.00 0.00 2.41
5406 5939 2.292292 GGTGTTGCTATTTCGGTGTTGT 59.708 45.455 0.00 0.00 0.00 3.32
5407 5940 2.664424 CGGTGTTGCTATTTCGGTGTTG 60.664 50.000 0.00 0.00 0.00 3.33
5408 5941 1.533731 CGGTGTTGCTATTTCGGTGTT 59.466 47.619 0.00 0.00 0.00 3.32
5409 5942 1.153353 CGGTGTTGCTATTTCGGTGT 58.847 50.000 0.00 0.00 0.00 4.16
5410 5943 1.434555 TCGGTGTTGCTATTTCGGTG 58.565 50.000 0.00 0.00 0.00 4.94
5411 5944 2.396590 ATCGGTGTTGCTATTTCGGT 57.603 45.000 0.00 0.00 0.00 4.69
5412 5945 6.100004 AGATATATCGGTGTTGCTATTTCGG 58.900 40.000 7.08 0.00 0.00 4.30
5413 5946 6.806739 TGAGATATATCGGTGTTGCTATTTCG 59.193 38.462 7.08 0.00 0.00 3.46
5414 5947 7.063544 GGTGAGATATATCGGTGTTGCTATTTC 59.936 40.741 7.08 0.00 0.00 2.17
5415 5948 6.874134 GGTGAGATATATCGGTGTTGCTATTT 59.126 38.462 7.08 0.00 0.00 1.40
5416 5949 6.211584 AGGTGAGATATATCGGTGTTGCTATT 59.788 38.462 7.08 0.00 0.00 1.73
5417 5950 5.717178 AGGTGAGATATATCGGTGTTGCTAT 59.283 40.000 7.08 0.00 0.00 2.97
5418 5951 5.077564 AGGTGAGATATATCGGTGTTGCTA 58.922 41.667 7.08 0.00 0.00 3.49
5419 5952 3.898123 AGGTGAGATATATCGGTGTTGCT 59.102 43.478 7.08 0.00 0.00 3.91
5420 5953 4.258702 AGGTGAGATATATCGGTGTTGC 57.741 45.455 7.08 0.00 0.00 4.17
5421 5954 4.991056 CCAAGGTGAGATATATCGGTGTTG 59.009 45.833 7.08 8.43 0.00 3.33
5422 5955 4.040461 CCCAAGGTGAGATATATCGGTGTT 59.960 45.833 7.08 0.00 0.00 3.32
5423 5956 3.578716 CCCAAGGTGAGATATATCGGTGT 59.421 47.826 7.08 0.00 0.00 4.16
5424 5957 3.578716 ACCCAAGGTGAGATATATCGGTG 59.421 47.826 7.08 1.43 32.98 4.94
5489 6022 7.921786 TGAATGATACTCGAATGAACCTTTT 57.078 32.000 0.00 0.00 0.00 2.27
5515 6048 8.733092 ATGTCCATATCGATCCCTATGATTAT 57.267 34.615 0.00 0.00 32.41 1.28
5631 6165 8.919145 CCCTTCTTACTAACACTCATAAGATCT 58.081 37.037 0.00 0.00 34.49 2.75
5709 6244 0.971386 AAACGCTTCCGGTTCCTCTA 59.029 50.000 0.00 0.00 41.22 2.43
5737 6272 6.546034 CCCGATAAACTATGAAACCCTTCAAT 59.454 38.462 0.00 0.00 44.64 2.57
5738 6273 5.883673 CCCGATAAACTATGAAACCCTTCAA 59.116 40.000 0.00 0.00 44.64 2.69
5739 6274 5.433526 CCCGATAAACTATGAAACCCTTCA 58.566 41.667 0.00 0.00 45.53 3.02
5867 6407 7.657354 CCTTTTAAGGCCCATTGCTATTTAATC 59.343 37.037 0.00 0.00 39.76 1.75
6014 6573 1.073284 GACTCCAACCAAACTAGCCCA 59.927 52.381 0.00 0.00 0.00 5.36
6015 6574 1.613520 GGACTCCAACCAAACTAGCCC 60.614 57.143 0.00 0.00 0.00 5.19
6016 6575 1.073284 TGGACTCCAACCAAACTAGCC 59.927 52.381 0.00 0.00 34.25 3.93
6017 6576 2.152016 GTGGACTCCAACCAAACTAGC 58.848 52.381 0.00 0.00 39.22 3.42
6018 6577 3.139077 GTGTGGACTCCAACCAAACTAG 58.861 50.000 0.00 0.00 41.10 2.57
6019 6578 2.506231 TGTGTGGACTCCAACCAAACTA 59.494 45.455 0.00 0.00 43.73 2.24
6020 6579 1.283613 TGTGTGGACTCCAACCAAACT 59.716 47.619 0.00 0.00 43.73 2.66
6021 6580 1.757682 TGTGTGGACTCCAACCAAAC 58.242 50.000 0.00 0.00 43.67 2.93
6022 6581 2.516227 TTGTGTGGACTCCAACCAAA 57.484 45.000 0.00 0.00 39.22 3.28
6023 6582 2.516227 TTTGTGTGGACTCCAACCAA 57.484 45.000 0.00 3.11 39.22 3.67
6024 6583 2.516227 TTTTGTGTGGACTCCAACCA 57.484 45.000 0.00 0.00 34.18 3.67
6025 6584 4.400529 AATTTTTGTGTGGACTCCAACC 57.599 40.909 0.00 0.00 34.18 3.77
6026 6585 4.033932 GCAAATTTTTGTGTGGACTCCAAC 59.966 41.667 0.00 1.78 40.24 3.77
6027 6586 4.187694 GCAAATTTTTGTGTGGACTCCAA 58.812 39.130 0.00 0.00 40.24 3.53
6028 6587 3.431486 GGCAAATTTTTGTGTGGACTCCA 60.431 43.478 0.00 0.00 40.24 3.86
6029 6588 3.130633 GGCAAATTTTTGTGTGGACTCC 58.869 45.455 5.05 0.00 40.24 3.85
6030 6589 3.803778 CAGGCAAATTTTTGTGTGGACTC 59.196 43.478 5.05 0.00 40.24 3.36
6031 6590 3.795877 CAGGCAAATTTTTGTGTGGACT 58.204 40.909 5.05 0.00 40.24 3.85
6032 6591 2.287644 GCAGGCAAATTTTTGTGTGGAC 59.712 45.455 5.05 0.00 40.24 4.02
6033 6592 2.559440 GCAGGCAAATTTTTGTGTGGA 58.441 42.857 5.05 0.00 40.24 4.02
6034 6593 1.603326 GGCAGGCAAATTTTTGTGTGG 59.397 47.619 5.05 0.00 40.24 4.17
6035 6594 2.288458 CAGGCAGGCAAATTTTTGTGTG 59.712 45.455 0.00 4.28 40.24 3.82
6036 6595 2.170187 TCAGGCAGGCAAATTTTTGTGT 59.830 40.909 0.00 0.00 40.24 3.72
6037 6596 2.836262 TCAGGCAGGCAAATTTTTGTG 58.164 42.857 0.00 0.00 40.24 3.33
6038 6597 3.469739 CTTCAGGCAGGCAAATTTTTGT 58.530 40.909 0.00 0.00 40.24 2.83
6039 6598 2.224784 GCTTCAGGCAGGCAAATTTTTG 59.775 45.455 0.00 0.00 41.35 2.44
6040 6599 2.497138 GCTTCAGGCAGGCAAATTTTT 58.503 42.857 0.00 0.00 41.35 1.94
6041 6600 1.271001 GGCTTCAGGCAGGCAAATTTT 60.271 47.619 0.00 0.00 44.01 1.82
6042 6601 0.322648 GGCTTCAGGCAGGCAAATTT 59.677 50.000 0.00 0.00 44.01 1.82
6043 6602 0.543646 AGGCTTCAGGCAGGCAAATT 60.544 50.000 2.85 0.00 44.01 1.82
6044 6603 1.077985 AGGCTTCAGGCAGGCAAAT 59.922 52.632 2.85 0.00 44.01 2.32
6045 6604 1.904865 CAGGCTTCAGGCAGGCAAA 60.905 57.895 2.85 0.00 44.01 3.68
6046 6605 2.282674 CAGGCTTCAGGCAGGCAA 60.283 61.111 2.85 0.00 44.01 4.52
6049 6608 4.044439 AGGCAGGCTTCAGGCAGG 62.044 66.667 2.85 0.00 44.01 4.85
6050 6609 2.750637 CAGGCAGGCTTCAGGCAG 60.751 66.667 2.85 0.00 44.01 4.85
6051 6610 3.251509 TCAGGCAGGCTTCAGGCA 61.252 61.111 2.85 0.00 44.01 4.75
6052 6611 2.438075 CTCAGGCAGGCTTCAGGC 60.438 66.667 0.00 0.00 41.43 4.85
6053 6612 1.221293 CTCTCAGGCAGGCTTCAGG 59.779 63.158 0.00 0.00 0.00 3.86
6054 6613 1.449956 GCTCTCAGGCAGGCTTCAG 60.450 63.158 0.00 0.00 0.00 3.02
6055 6614 1.771783 TTGCTCTCAGGCAGGCTTCA 61.772 55.000 0.00 0.00 43.39 3.02
6056 6615 1.002868 TTGCTCTCAGGCAGGCTTC 60.003 57.895 0.00 0.00 43.39 3.86
6057 6616 1.002379 CTTGCTCTCAGGCAGGCTT 60.002 57.895 0.00 0.00 43.39 4.35
6058 6617 1.273269 ATCTTGCTCTCAGGCAGGCT 61.273 55.000 0.00 0.00 43.39 4.58
6059 6618 1.096386 CATCTTGCTCTCAGGCAGGC 61.096 60.000 0.00 0.00 43.39 4.85
6060 6619 0.464013 CCATCTTGCTCTCAGGCAGG 60.464 60.000 0.00 0.00 43.39 4.85
6061 6620 0.540454 TCCATCTTGCTCTCAGGCAG 59.460 55.000 0.00 0.00 43.39 4.85
6062 6621 0.986527 TTCCATCTTGCTCTCAGGCA 59.013 50.000 0.00 0.00 40.74 4.75
6063 6622 1.666054 CTTCCATCTTGCTCTCAGGC 58.334 55.000 0.00 0.00 0.00 4.85
6064 6623 1.558756 ACCTTCCATCTTGCTCTCAGG 59.441 52.381 0.00 0.00 0.00 3.86
6065 6624 2.027377 ACACCTTCCATCTTGCTCTCAG 60.027 50.000 0.00 0.00 0.00 3.35
6066 6625 1.980765 ACACCTTCCATCTTGCTCTCA 59.019 47.619 0.00 0.00 0.00 3.27
6067 6626 2.777832 ACACCTTCCATCTTGCTCTC 57.222 50.000 0.00 0.00 0.00 3.20
6068 6627 2.613977 CGAACACCTTCCATCTTGCTCT 60.614 50.000 0.00 0.00 0.00 4.09
6069 6628 1.734465 CGAACACCTTCCATCTTGCTC 59.266 52.381 0.00 0.00 0.00 4.26
6070 6629 1.611673 CCGAACACCTTCCATCTTGCT 60.612 52.381 0.00 0.00 0.00 3.91
6071 6630 0.804989 CCGAACACCTTCCATCTTGC 59.195 55.000 0.00 0.00 0.00 4.01
6072 6631 2.185004 ACCGAACACCTTCCATCTTG 57.815 50.000 0.00 0.00 0.00 3.02
6073 6632 2.779506 GAACCGAACACCTTCCATCTT 58.220 47.619 0.00 0.00 0.00 2.40
6074 6633 1.337823 CGAACCGAACACCTTCCATCT 60.338 52.381 0.00 0.00 0.00 2.90
6075 6634 1.076332 CGAACCGAACACCTTCCATC 58.924 55.000 0.00 0.00 0.00 3.51
6076 6635 0.395312 ACGAACCGAACACCTTCCAT 59.605 50.000 0.00 0.00 0.00 3.41
6077 6636 0.531090 CACGAACCGAACACCTTCCA 60.531 55.000 0.00 0.00 0.00 3.53
6078 6637 0.531311 ACACGAACCGAACACCTTCC 60.531 55.000 0.00 0.00 0.00 3.46
6079 6638 0.857287 GACACGAACCGAACACCTTC 59.143 55.000 0.00 0.00 0.00 3.46
6080 6639 0.531311 GGACACGAACCGAACACCTT 60.531 55.000 0.00 0.00 0.00 3.50
6081 6640 1.068585 GGACACGAACCGAACACCT 59.931 57.895 0.00 0.00 0.00 4.00
6082 6641 3.633951 GGACACGAACCGAACACC 58.366 61.111 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.