Multiple sequence alignment - TraesCS5D01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G327200 chr5D 100.000 2900 0 0 1 2900 420018536 420021435 0.000000e+00 5356.0
1 TraesCS5D01G327200 chr5D 87.658 1345 115 24 738 2060 538687030 538688345 0.000000e+00 1517.0
2 TraesCS5D01G327200 chr5D 88.610 878 68 14 1 849 538686349 538687223 0.000000e+00 1038.0
3 TraesCS5D01G327200 chr5D 89.122 524 39 11 2387 2899 438844197 438843681 1.130000e-178 636.0
4 TraesCS5D01G327200 chr6A 94.578 2379 93 6 1 2363 571573950 571576308 0.000000e+00 3646.0
5 TraesCS5D01G327200 chr6A 95.065 385 19 0 1979 2363 554477575 554477959 8.890000e-170 606.0
6 TraesCS5D01G327200 chr4B 94.160 2380 91 19 1 2363 449517947 449520295 0.000000e+00 3581.0
7 TraesCS5D01G327200 chr4B 93.781 1624 75 12 751 2363 535286166 535287774 0.000000e+00 2416.0
8 TraesCS5D01G327200 chr4B 96.137 906 30 4 1 901 535285492 535286397 0.000000e+00 1474.0
9 TraesCS5D01G327200 chr4B 90.596 319 25 4 673 986 428198144 428197826 4.470000e-113 418.0
10 TraesCS5D01G327200 chr4B 90.312 320 25 4 673 986 428198064 428197745 5.780000e-112 414.0
11 TraesCS5D01G327200 chr4B 90.554 307 23 5 674 974 428197983 428197677 4.500000e-108 401.0
12 TraesCS5D01G327200 chr2B 93.538 1625 81 7 751 2363 358758064 358759676 0.000000e+00 2398.0
13 TraesCS5D01G327200 chr2B 85.567 1649 177 33 737 2360 54562881 54561269 0.000000e+00 1670.0
14 TraesCS5D01G327200 chr2B 90.762 682 56 5 1 675 579976817 579977498 0.000000e+00 904.0
15 TraesCS5D01G327200 chr2B 93.917 411 21 3 500 906 358757890 358758300 4.110000e-173 617.0
16 TraesCS5D01G327200 chr7A 96.319 1331 41 1 1041 2363 297775891 297774561 0.000000e+00 2180.0
17 TraesCS5D01G327200 chr7A 97.661 1026 20 3 1 1022 297785639 297784614 0.000000e+00 1759.0
18 TraesCS5D01G327200 chr7A 95.455 132 6 0 2768 2899 646666672 646666541 8.140000e-51 211.0
19 TraesCS5D01G327200 chr7A 95.455 132 6 0 2768 2899 646685507 646685638 8.140000e-51 211.0
20 TraesCS5D01G327200 chr7A 93.939 132 8 0 2768 2899 644777518 644777387 1.760000e-47 200.0
21 TraesCS5D01G327200 chr7A 93.976 83 5 0 2817 2899 681008238 681008320 3.030000e-25 126.0
22 TraesCS5D01G327200 chr7B 84.402 2090 245 48 295 2363 269097916 269095887 0.000000e+00 1978.0
23 TraesCS5D01G327200 chr7B 95.455 132 6 0 2768 2899 749472945 749472814 8.140000e-51 211.0
24 TraesCS5D01G327200 chr7B 79.845 129 26 0 2768 2896 532150009 532150137 8.560000e-16 95.3
25 TraesCS5D01G327200 chr3B 93.664 1231 55 6 1144 2363 604141017 604139799 0.000000e+00 1820.0
26 TraesCS5D01G327200 chr3B 95.940 739 29 1 1626 2363 576053728 576052990 0.000000e+00 1197.0
27 TraesCS5D01G327200 chr7D 85.992 1699 177 37 684 2363 271454794 271456450 0.000000e+00 1762.0
28 TraesCS5D01G327200 chr7D 94.737 133 7 0 2768 2900 41849936 41849804 1.050000e-49 207.0
29 TraesCS5D01G327200 chr3D 86.142 1638 138 41 751 2363 339817076 339818649 0.000000e+00 1685.0
30 TraesCS5D01G327200 chr3D 89.070 860 79 8 1 848 339816399 339817255 0.000000e+00 1053.0
31 TraesCS5D01G327200 chr2A 81.480 2014 282 49 1 1976 57825631 57827591 0.000000e+00 1568.0
32 TraesCS5D01G327200 chr4A 86.898 1412 131 26 673 2060 629935464 629936845 0.000000e+00 1533.0
33 TraesCS5D01G327200 chr1B 94.742 951 49 1 1414 2363 400360033 400360983 0.000000e+00 1478.0
34 TraesCS5D01G327200 chr1A 87.519 1298 132 15 738 2008 80283925 80282631 0.000000e+00 1472.0
35 TraesCS5D01G327200 chr1D 88.141 877 73 14 1 849 80673888 80674761 0.000000e+00 1014.0
36 TraesCS5D01G327200 chr1D 93.182 132 9 0 2768 2899 397533260 397533391 8.200000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G327200 chr5D 420018536 420021435 2899 False 5356.0 5356 100.0000 1 2900 1 chr5D.!!$F1 2899
1 TraesCS5D01G327200 chr5D 538686349 538688345 1996 False 1277.5 1517 88.1340 1 2060 2 chr5D.!!$F2 2059
2 TraesCS5D01G327200 chr5D 438843681 438844197 516 True 636.0 636 89.1220 2387 2899 1 chr5D.!!$R1 512
3 TraesCS5D01G327200 chr6A 571573950 571576308 2358 False 3646.0 3646 94.5780 1 2363 1 chr6A.!!$F2 2362
4 TraesCS5D01G327200 chr4B 449517947 449520295 2348 False 3581.0 3581 94.1600 1 2363 1 chr4B.!!$F1 2362
5 TraesCS5D01G327200 chr4B 535285492 535287774 2282 False 1945.0 2416 94.9590 1 2363 2 chr4B.!!$F2 2362
6 TraesCS5D01G327200 chr2B 54561269 54562881 1612 True 1670.0 1670 85.5670 737 2360 1 chr2B.!!$R1 1623
7 TraesCS5D01G327200 chr2B 358757890 358759676 1786 False 1507.5 2398 93.7275 500 2363 2 chr2B.!!$F2 1863
8 TraesCS5D01G327200 chr2B 579976817 579977498 681 False 904.0 904 90.7620 1 675 1 chr2B.!!$F1 674
9 TraesCS5D01G327200 chr7A 297774561 297775891 1330 True 2180.0 2180 96.3190 1041 2363 1 chr7A.!!$R1 1322
10 TraesCS5D01G327200 chr7A 297784614 297785639 1025 True 1759.0 1759 97.6610 1 1022 1 chr7A.!!$R2 1021
11 TraesCS5D01G327200 chr7B 269095887 269097916 2029 True 1978.0 1978 84.4020 295 2363 1 chr7B.!!$R1 2068
12 TraesCS5D01G327200 chr3B 604139799 604141017 1218 True 1820.0 1820 93.6640 1144 2363 1 chr3B.!!$R2 1219
13 TraesCS5D01G327200 chr3B 576052990 576053728 738 True 1197.0 1197 95.9400 1626 2363 1 chr3B.!!$R1 737
14 TraesCS5D01G327200 chr7D 271454794 271456450 1656 False 1762.0 1762 85.9920 684 2363 1 chr7D.!!$F1 1679
15 TraesCS5D01G327200 chr3D 339816399 339818649 2250 False 1369.0 1685 87.6060 1 2363 2 chr3D.!!$F1 2362
16 TraesCS5D01G327200 chr2A 57825631 57827591 1960 False 1568.0 1568 81.4800 1 1976 1 chr2A.!!$F1 1975
17 TraesCS5D01G327200 chr4A 629935464 629936845 1381 False 1533.0 1533 86.8980 673 2060 1 chr4A.!!$F1 1387
18 TraesCS5D01G327200 chr1B 400360033 400360983 950 False 1478.0 1478 94.7420 1414 2363 1 chr1B.!!$F1 949
19 TraesCS5D01G327200 chr1A 80282631 80283925 1294 True 1472.0 1472 87.5190 738 2008 1 chr1A.!!$R1 1270
20 TraesCS5D01G327200 chr1D 80673888 80674761 873 False 1014.0 1014 88.1410 1 849 1 chr1D.!!$F1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 1.154430 TTAGCTGGTTGGGAAGGGTT 58.846 50.0 0.0 0.0 0.0 4.11 F
1112 1432 1.242076 GCTGGTCTTGTTGCTGATGT 58.758 50.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1752 1.217942 GGTATTCAGGAAGGGGGCATT 59.782 52.381 0.0 0.0 0.0 3.56 R
2367 2739 0.036388 GAAGAGGGACATTGACGCCA 60.036 55.000 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.154430 TTAGCTGGTTGGGAAGGGTT 58.846 50.000 0.00 0.00 0.00 4.11
548 556 3.957188 TGGACCACCCAACCAATTT 57.043 47.368 0.00 0.00 43.29 1.82
1022 1342 1.949525 GGAGAGTGTTGAAGCTGCAAA 59.050 47.619 9.26 0.00 0.00 3.68
1112 1432 1.242076 GCTGGTCTTGTTGCTGATGT 58.758 50.000 0.00 0.00 0.00 3.06
1153 1473 4.987963 TTCAGGGATGTGCATCATAGAT 57.012 40.909 13.37 0.00 39.54 1.98
1420 1752 6.384258 TTTTGCACAATGTTTGTAGAGCTA 57.616 33.333 0.00 0.00 43.23 3.32
1469 1801 1.244816 CACTATCATGCCATGGCTGG 58.755 55.000 35.53 26.43 46.17 4.85
1608 1952 0.674895 CTTCTCTCCCCAAAGCACCG 60.675 60.000 0.00 0.00 0.00 4.94
1663 2008 8.792830 TCCTGAAGATCCACTTAGTTTAATTG 57.207 34.615 0.00 0.00 39.13 2.32
1720 2066 6.183360 GCTTGTGAAGTCTAGTGGAGATGATA 60.183 42.308 0.00 0.00 36.29 2.15
1754 2100 5.363868 CAGATGACCTTTGGGATGTAGTCTA 59.636 44.000 0.00 0.00 36.25 2.59
1766 2112 3.610040 TGTAGTCTACACATTGCCAGG 57.390 47.619 8.70 0.00 32.89 4.45
1836 2186 2.553028 CCCAAAGACTGCAAGAGCCTTA 60.553 50.000 0.00 0.00 41.13 2.69
2319 2689 3.290948 TTTGCTCCTACCAAACACAGT 57.709 42.857 0.00 0.00 0.00 3.55
2320 2690 4.425180 TTTGCTCCTACCAAACACAGTA 57.575 40.909 0.00 0.00 0.00 2.74
2321 2691 4.425180 TTGCTCCTACCAAACACAGTAA 57.575 40.909 0.00 0.00 0.00 2.24
2378 2750 4.637483 CATTCCTAAATGGCGTCAATGT 57.363 40.909 0.00 0.00 38.91 2.71
2379 2751 4.601019 CATTCCTAAATGGCGTCAATGTC 58.399 43.478 0.00 0.00 38.91 3.06
2380 2752 2.639065 TCCTAAATGGCGTCAATGTCC 58.361 47.619 0.00 0.00 35.26 4.02
2381 2753 1.676006 CCTAAATGGCGTCAATGTCCC 59.324 52.381 0.00 0.00 0.00 4.46
2382 2754 2.643551 CTAAATGGCGTCAATGTCCCT 58.356 47.619 0.00 0.00 0.00 4.20
2383 2755 1.463674 AAATGGCGTCAATGTCCCTC 58.536 50.000 0.00 0.00 0.00 4.30
2384 2756 0.620556 AATGGCGTCAATGTCCCTCT 59.379 50.000 0.00 0.00 0.00 3.69
2385 2757 0.620556 ATGGCGTCAATGTCCCTCTT 59.379 50.000 0.00 0.00 0.00 2.85
2426 2808 5.122396 GGCCTTGAGTTACACTAGTTCATTG 59.878 44.000 0.00 0.00 0.00 2.82
2427 2809 5.701290 GCCTTGAGTTACACTAGTTCATTGT 59.299 40.000 0.00 0.00 0.00 2.71
2428 2810 6.204882 GCCTTGAGTTACACTAGTTCATTGTT 59.795 38.462 0.00 0.00 0.00 2.83
2429 2811 7.571428 GCCTTGAGTTACACTAGTTCATTGTTC 60.571 40.741 0.00 0.00 0.00 3.18
2430 2812 7.441157 CCTTGAGTTACACTAGTTCATTGTTCA 59.559 37.037 0.00 0.00 0.00 3.18
2431 2813 8.902540 TTGAGTTACACTAGTTCATTGTTCAT 57.097 30.769 0.00 0.00 0.00 2.57
2432 2814 9.990360 TTGAGTTACACTAGTTCATTGTTCATA 57.010 29.630 0.00 0.00 0.00 2.15
2455 2843 6.067217 AGCCAGTTTCATTTGGTATAGAGT 57.933 37.500 0.00 0.00 36.81 3.24
2456 2844 5.882557 AGCCAGTTTCATTTGGTATAGAGTG 59.117 40.000 0.00 0.00 36.81 3.51
2457 2845 5.066505 GCCAGTTTCATTTGGTATAGAGTGG 59.933 44.000 0.00 0.00 36.81 4.00
2466 2854 1.497161 GTATAGAGTGGGTGGGCTGT 58.503 55.000 0.00 0.00 0.00 4.40
2469 2857 0.708209 TAGAGTGGGTGGGCTGTCTA 59.292 55.000 0.00 0.00 0.00 2.59
2470 2858 0.178903 AGAGTGGGTGGGCTGTCTAA 60.179 55.000 0.00 0.00 0.00 2.10
2668 3058 5.393461 GGCATAAAGTGATTGGAGTTGGAAG 60.393 44.000 0.00 0.00 0.00 3.46
2670 3060 6.294731 GCATAAAGTGATTGGAGTTGGAAGTT 60.295 38.462 0.00 0.00 0.00 2.66
2671 3061 5.520376 AAAGTGATTGGAGTTGGAAGTTG 57.480 39.130 0.00 0.00 0.00 3.16
2672 3062 3.490348 AGTGATTGGAGTTGGAAGTTGG 58.510 45.455 0.00 0.00 0.00 3.77
2673 3063 3.138283 AGTGATTGGAGTTGGAAGTTGGA 59.862 43.478 0.00 0.00 0.00 3.53
2674 3064 3.888930 GTGATTGGAGTTGGAAGTTGGAA 59.111 43.478 0.00 0.00 0.00 3.53
2675 3065 3.888930 TGATTGGAGTTGGAAGTTGGAAC 59.111 43.478 0.00 0.00 0.00 3.62
2676 3066 3.662759 TTGGAGTTGGAAGTTGGAACT 57.337 42.857 0.00 0.00 42.04 3.01
2677 3067 3.208747 TGGAGTTGGAAGTTGGAACTC 57.791 47.619 12.39 12.39 43.23 3.01
2678 3068 2.143925 GGAGTTGGAAGTTGGAACTCG 58.856 52.381 13.64 0.00 44.36 4.18
2679 3069 2.143925 GAGTTGGAAGTTGGAACTCGG 58.856 52.381 7.52 0.00 38.57 4.63
2689 3079 4.351127 AGTTGGAACTCGGGTAGAACTAT 58.649 43.478 5.15 0.00 32.86 2.12
2700 3090 3.391296 GGGTAGAACTATGCATTGGAGGA 59.609 47.826 3.54 0.00 0.00 3.71
2703 3093 5.471456 GGTAGAACTATGCATTGGAGGAATG 59.529 44.000 3.54 0.00 43.97 2.67
2719 3109 5.514484 GGAGGAATGCAGGAAGATGTATGAT 60.514 44.000 0.00 0.00 0.00 2.45
2727 3117 7.485810 TGCAGGAAGATGTATGATCAATTTTG 58.514 34.615 0.00 0.00 0.00 2.44
2728 3118 6.420008 GCAGGAAGATGTATGATCAATTTTGC 59.580 38.462 0.00 0.00 0.00 3.68
2730 3120 7.861372 CAGGAAGATGTATGATCAATTTTGCTC 59.139 37.037 0.00 0.00 0.00 4.26
2743 3133 1.979855 TTTGCTCTAGTTGGCAAGCA 58.020 45.000 6.71 6.71 46.75 3.91
2759 3149 0.471617 AGCATACCTAAGCTGCCTGG 59.528 55.000 0.00 0.00 40.13 4.45
2763 3153 1.271840 TACCTAAGCTGCCTGGTGGG 61.272 60.000 15.81 5.39 34.33 4.61
2776 3166 1.602323 GGTGGGCCGTCAATTGACA 60.602 57.895 32.06 14.28 44.99 3.58
2830 3220 2.479837 TGTGCCGAAGTGACTACAAAG 58.520 47.619 0.00 0.00 0.00 2.77
2834 3224 2.413837 CCGAAGTGACTACAAAGGTGG 58.586 52.381 0.00 0.00 0.00 4.61
2865 3255 4.943705 TGAGCTTGGTGATGGTAATTTCTC 59.056 41.667 0.00 0.00 0.00 2.87
2878 3268 9.606631 GATGGTAATTTCTCTCTACTTGTTGAT 57.393 33.333 0.00 0.00 0.00 2.57
2892 3282 3.942130 TGTTGATGAGTCTCGTGATGT 57.058 42.857 0.00 0.00 0.00 3.06
2893 3283 5.048013 ACTTGTTGATGAGTCTCGTGATGTA 60.048 40.000 0.00 0.00 0.00 2.29
2899 3289 2.612672 TGAGTCTCGTGATGTATCGGTC 59.387 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 216 6.166279 CAGCATCAACTAGGTAGAACTTTCA 58.834 40.000 0.00 0.00 0.00 2.69
548 556 2.030371 TGCTTGTTGCCTTGATGTTCA 58.970 42.857 0.00 0.00 42.00 3.18
573 581 2.202837 CTACCACGGCCCTAACGC 60.203 66.667 0.00 0.00 34.00 4.84
727 736 2.579873 ACATGATACAATCTGCCCAGC 58.420 47.619 0.00 0.00 0.00 4.85
728 737 4.965814 AGTACATGATACAATCTGCCCAG 58.034 43.478 0.00 0.00 0.00 4.45
950 1121 6.855763 TCTGTCCAGCCATCAAATAAATTT 57.144 33.333 0.00 0.00 0.00 1.82
1022 1342 4.382852 CTCTCCCGGAGTTCCCAT 57.617 61.111 14.36 0.00 37.30 4.00
1112 1432 4.202212 TGAATCCACTTGACGTTCTCTTCA 60.202 41.667 0.00 0.00 0.00 3.02
1153 1473 3.313803 TCGTTCAAAACAGCAGCACATTA 59.686 39.130 0.00 0.00 0.00 1.90
1420 1752 1.217942 GGTATTCAGGAAGGGGGCATT 59.782 52.381 0.00 0.00 0.00 3.56
1469 1801 2.485302 GCCCCAATTGTCCCATAAATGC 60.485 50.000 4.43 0.00 0.00 3.56
1663 2008 5.043248 CACAAGTTTGAACCCATCTTTGAC 58.957 41.667 0.00 0.00 0.00 3.18
1720 2066 5.195940 CCAAAGGTCATCTGGTATGTCATT 58.804 41.667 0.00 0.00 0.00 2.57
1754 2100 2.964464 TCATCAAAACCTGGCAATGTGT 59.036 40.909 0.00 0.00 0.00 3.72
1766 2112 3.424962 GGCTACGTGCTCTTCATCAAAAC 60.425 47.826 0.00 0.00 42.39 2.43
1836 2186 5.428184 TGTTGGTTTGGGAAAGTTTCATT 57.572 34.783 17.16 0.00 0.00 2.57
1904 2254 8.902806 CATACTTGACAACCATACAACCATATT 58.097 33.333 0.00 0.00 0.00 1.28
2254 2624 0.673437 CGGTGTTTGGTTGGAAGCAT 59.327 50.000 0.00 0.00 36.16 3.79
2284 2654 1.975680 AGCAAAAGAGAGGAACGGGTA 59.024 47.619 0.00 0.00 0.00 3.69
2319 2689 2.793288 GGAACGGGTCCATTCCTTTA 57.207 50.000 7.34 0.00 46.97 1.85
2320 2690 3.664240 GGAACGGGTCCATTCCTTT 57.336 52.632 7.34 0.00 46.97 3.11
2363 2735 2.238646 AGAGGGACATTGACGCCATTTA 59.761 45.455 0.00 0.00 0.00 1.40
2364 2736 1.004745 AGAGGGACATTGACGCCATTT 59.995 47.619 0.00 0.00 0.00 2.32
2365 2737 0.620556 AGAGGGACATTGACGCCATT 59.379 50.000 0.00 0.00 0.00 3.16
2366 2738 0.620556 AAGAGGGACATTGACGCCAT 59.379 50.000 0.00 0.00 0.00 4.40
2367 2739 0.036388 GAAGAGGGACATTGACGCCA 60.036 55.000 0.00 0.00 0.00 5.69
2368 2740 0.036388 TGAAGAGGGACATTGACGCC 60.036 55.000 0.00 0.00 0.00 5.68
2369 2741 2.029838 ATGAAGAGGGACATTGACGC 57.970 50.000 0.00 0.00 0.00 5.19
2370 2742 3.496130 GCATATGAAGAGGGACATTGACG 59.504 47.826 6.97 0.00 0.00 4.35
2371 2743 3.817647 GGCATATGAAGAGGGACATTGAC 59.182 47.826 6.97 0.00 0.00 3.18
2372 2744 3.459227 TGGCATATGAAGAGGGACATTGA 59.541 43.478 6.97 0.00 0.00 2.57
2373 2745 3.824133 TGGCATATGAAGAGGGACATTG 58.176 45.455 6.97 0.00 0.00 2.82
2374 2746 4.524802 TTGGCATATGAAGAGGGACATT 57.475 40.909 6.97 0.00 0.00 2.71
2375 2747 4.736611 ATTGGCATATGAAGAGGGACAT 57.263 40.909 6.97 0.00 0.00 3.06
2376 2748 5.848286 ATATTGGCATATGAAGAGGGACA 57.152 39.130 6.97 0.00 0.00 4.02
2377 2749 7.337942 CCTTTATATTGGCATATGAAGAGGGAC 59.662 40.741 6.97 0.00 39.65 4.46
2378 2750 7.405292 CCTTTATATTGGCATATGAAGAGGGA 58.595 38.462 6.97 0.00 39.65 4.20
2379 2751 7.636150 CCTTTATATTGGCATATGAAGAGGG 57.364 40.000 6.97 4.72 39.65 4.30
2426 2808 5.391312 ACCAAATGAAACTGGCTATGAAC 57.609 39.130 0.00 0.00 36.03 3.18
2427 2809 8.271458 TCTATACCAAATGAAACTGGCTATGAA 58.729 33.333 0.00 0.00 36.03 2.57
2428 2810 7.801104 TCTATACCAAATGAAACTGGCTATGA 58.199 34.615 0.00 0.00 36.03 2.15
2429 2811 7.716998 ACTCTATACCAAATGAAACTGGCTATG 59.283 37.037 0.00 0.00 36.03 2.23
2430 2812 7.716998 CACTCTATACCAAATGAAACTGGCTAT 59.283 37.037 0.00 0.00 36.03 2.97
2431 2813 7.047891 CACTCTATACCAAATGAAACTGGCTA 58.952 38.462 0.00 0.00 36.03 3.93
2432 2814 5.882557 CACTCTATACCAAATGAAACTGGCT 59.117 40.000 0.00 0.00 36.03 4.75
2455 2843 0.907704 ACGATTAGACAGCCCACCCA 60.908 55.000 0.00 0.00 0.00 4.51
2456 2844 1.117150 TACGATTAGACAGCCCACCC 58.883 55.000 0.00 0.00 0.00 4.61
2457 2845 3.825014 TCTATACGATTAGACAGCCCACC 59.175 47.826 0.00 0.00 0.00 4.61
2548 2937 5.373812 AATGGATAACTTAGGACCACCAG 57.626 43.478 0.00 0.00 38.94 4.00
2599 2989 9.481340 TCTCAAATGAATTCACCGAGATAATAG 57.519 33.333 21.00 6.94 0.00 1.73
2603 2993 6.203530 GCATCTCAAATGAATTCACCGAGATA 59.796 38.462 28.39 14.88 36.84 1.98
2609 2999 5.506982 GCCTAGCATCTCAAATGAATTCACC 60.507 44.000 11.07 0.00 0.00 4.02
2668 3058 4.430908 CATAGTTCTACCCGAGTTCCAAC 58.569 47.826 0.00 0.00 0.00 3.77
2670 3060 2.429610 GCATAGTTCTACCCGAGTTCCA 59.570 50.000 0.00 0.00 0.00 3.53
2671 3061 2.429610 TGCATAGTTCTACCCGAGTTCC 59.570 50.000 0.00 0.00 0.00 3.62
2672 3062 3.795623 TGCATAGTTCTACCCGAGTTC 57.204 47.619 0.00 0.00 0.00 3.01
2673 3063 4.442706 CAATGCATAGTTCTACCCGAGTT 58.557 43.478 0.00 0.00 0.00 3.01
2674 3064 3.181465 CCAATGCATAGTTCTACCCGAGT 60.181 47.826 0.00 0.00 0.00 4.18
2675 3065 3.069586 TCCAATGCATAGTTCTACCCGAG 59.930 47.826 0.00 0.00 0.00 4.63
2676 3066 3.035363 TCCAATGCATAGTTCTACCCGA 58.965 45.455 0.00 0.00 0.00 5.14
2677 3067 3.393800 CTCCAATGCATAGTTCTACCCG 58.606 50.000 0.00 0.00 0.00 5.28
2678 3068 3.391296 TCCTCCAATGCATAGTTCTACCC 59.609 47.826 0.00 0.00 0.00 3.69
2679 3069 4.689612 TCCTCCAATGCATAGTTCTACC 57.310 45.455 0.00 0.00 0.00 3.18
2700 3090 7.834881 AATTGATCATACATCTTCCTGCATT 57.165 32.000 0.00 0.00 0.00 3.56
2703 3093 6.420008 GCAAAATTGATCATACATCTTCCTGC 59.580 38.462 0.00 0.00 0.00 4.85
2727 3117 1.943340 GGTATGCTTGCCAACTAGAGC 59.057 52.381 0.00 0.00 35.74 4.09
2728 3118 3.550437 AGGTATGCTTGCCAACTAGAG 57.450 47.619 9.39 0.00 0.00 2.43
2730 3120 3.561725 GCTTAGGTATGCTTGCCAACTAG 59.438 47.826 9.39 0.00 0.00 2.57
2743 3133 0.839946 CCACCAGGCAGCTTAGGTAT 59.160 55.000 4.05 0.00 32.01 2.73
2804 3194 0.166814 GTCACTTCGGCACATGCTTC 59.833 55.000 3.48 0.00 41.70 3.86
2830 3220 3.129287 CACCAAGCTCATTCATTACCACC 59.871 47.826 0.00 0.00 0.00 4.61
2834 3224 4.641989 ACCATCACCAAGCTCATTCATTAC 59.358 41.667 0.00 0.00 0.00 1.89
2865 3255 5.092105 CACGAGACTCATCAACAAGTAGAG 58.908 45.833 2.82 0.00 0.00 2.43
2878 3268 2.612672 GACCGATACATCACGAGACTCA 59.387 50.000 2.82 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.