Multiple sequence alignment - TraesCS5D01G326600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G326600 chr5D 100.000 5354 0 0 1 5354 418937316 418931963 0.000000e+00 9888.0
1 TraesCS5D01G326600 chr5B 95.043 1876 68 9 3485 5354 506313272 506311416 0.000000e+00 2926.0
2 TraesCS5D01G326600 chr5B 85.092 1744 117 44 14 1659 506316675 506314977 0.000000e+00 1648.0
3 TraesCS5D01G326600 chr5B 95.220 795 26 10 2579 3367 506314280 506313492 0.000000e+00 1247.0
4 TraesCS5D01G326600 chr5B 88.756 418 31 10 2070 2474 506314694 506314280 1.040000e-136 497.0
5 TraesCS5D01G326600 chr5B 88.053 226 15 5 1851 2076 506314986 506314773 1.910000e-64 257.0
6 TraesCS5D01G326600 chr5B 97.917 48 1 0 3393 3440 506313493 506313446 3.440000e-12 84.2
7 TraesCS5D01G326600 chr5A 85.501 1738 130 43 11 1659 533557850 533556146 0.000000e+00 1701.0
8 TraesCS5D01G326600 chr5A 90.821 926 66 4 3555 4464 533554534 533553612 0.000000e+00 1221.0
9 TraesCS5D01G326600 chr5A 88.616 896 70 12 2579 3471 533555487 533554621 0.000000e+00 1061.0
10 TraesCS5D01G326600 chr5A 86.990 907 74 22 4463 5354 533553556 533552679 0.000000e+00 981.0
11 TraesCS5D01G326600 chr5A 90.444 450 23 7 1851 2292 533556155 533555718 4.650000e-160 575.0
12 TraesCS5D01G326600 chr5A 79.545 484 84 10 6 485 565246680 565246208 1.110000e-86 331.0
13 TraesCS5D01G326600 chr5A 92.727 165 12 0 2310 2474 533555651 533555487 6.930000e-59 239.0
14 TraesCS5D01G326600 chr6B 80.982 489 78 10 3 485 114967239 114966760 1.820000e-99 374.0
15 TraesCS5D01G326600 chr6B 78.905 493 86 15 3 489 550322897 550323377 8.650000e-83 318.0
16 TraesCS5D01G326600 chr6B 80.709 254 40 8 1211 1461 461961849 461961602 7.080000e-44 189.0
17 TraesCS5D01G326600 chr2D 80.585 479 79 10 11 485 49897934 49897466 1.830000e-94 357.0
18 TraesCS5D01G326600 chr1B 96.209 211 7 1 1648 1857 24121633 24121843 1.430000e-90 344.0
19 TraesCS5D01G326600 chr7B 97.927 193 4 0 1661 1853 696615628 696615436 8.590000e-88 335.0
20 TraesCS5D01G326600 chr7B 95.122 205 10 0 1652 1856 695947662 695947458 1.860000e-84 324.0
21 TraesCS5D01G326600 chr1A 96.985 199 6 0 1656 1854 44328975 44329173 8.590000e-88 335.0
22 TraesCS5D01G326600 chr1A 95.495 111 5 0 2472 2582 376145950 376145840 1.530000e-40 178.0
23 TraesCS5D01G326600 chr1A 93.860 114 7 0 2473 2586 519257962 519257849 7.130000e-39 172.0
24 TraesCS5D01G326600 chr2B 96.970 198 6 0 1659 1856 38073973 38073776 3.090000e-87 333.0
25 TraesCS5D01G326600 chr2B 81.864 397 60 7 95 486 794330971 794331360 1.860000e-84 324.0
26 TraesCS5D01G326600 chr2B 80.244 410 69 9 29 435 87518956 87518556 1.130000e-76 298.0
27 TraesCS5D01G326600 chr2B 73.483 445 93 17 1 437 641006634 641007061 1.550000e-30 145.0
28 TraesCS5D01G326600 chrUn 95.631 206 9 0 1653 1858 12282327 12282122 1.110000e-86 331.0
29 TraesCS5D01G326600 chr3B 94.836 213 9 2 1646 1857 28111413 28111202 1.110000e-86 331.0
30 TraesCS5D01G326600 chr3B 96.482 199 5 2 1659 1856 742568017 742567820 1.440000e-85 327.0
31 TraesCS5D01G326600 chr2A 94.712 208 11 0 1651 1858 18860409 18860616 1.860000e-84 324.0
32 TraesCS5D01G326600 chr2A 81.061 396 63 7 95 485 763209708 763209320 6.740000e-79 305.0
33 TraesCS5D01G326600 chr4D 81.091 275 44 4 1194 1464 506607109 506606839 4.200000e-51 213.0
34 TraesCS5D01G326600 chr4D 94.643 112 6 0 2472 2583 317234728 317234617 1.980000e-39 174.0
35 TraesCS5D01G326600 chr6D 80.709 254 40 8 1211 1461 298207265 298207018 7.080000e-44 189.0
36 TraesCS5D01G326600 chr6D 80.315 254 41 8 1211 1461 298399306 298399059 3.290000e-42 183.0
37 TraesCS5D01G326600 chr6D 80.237 253 43 6 1211 1461 298444793 298444546 3.290000e-42 183.0
38 TraesCS5D01G326600 chr6A 80.156 257 42 8 1208 1461 420973722 420973972 3.290000e-42 183.0
39 TraesCS5D01G326600 chr6A 91.803 122 8 2 2471 2592 499205009 499205128 9.220000e-38 169.0
40 TraesCS5D01G326600 chr1D 81.659 229 35 6 1238 1464 364625230 364625007 3.290000e-42 183.0
41 TraesCS5D01G326600 chr1D 91.935 124 7 2 2464 2584 386156838 386156715 2.560000e-38 171.0
42 TraesCS5D01G326600 chr4A 91.473 129 7 3 2473 2597 594217975 594217847 1.980000e-39 174.0
43 TraesCS5D01G326600 chr4A 92.562 121 7 2 2473 2593 381221327 381221445 7.130000e-39 172.0
44 TraesCS5D01G326600 chr3D 94.643 112 6 0 2472 2583 606889286 606889397 1.980000e-39 174.0
45 TraesCS5D01G326600 chr3A 89.922 129 9 4 2461 2588 601362178 601362053 4.290000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G326600 chr5D 418931963 418937316 5353 True 9888.000000 9888 100.000000 1 5354 1 chr5D.!!$R1 5353
1 TraesCS5D01G326600 chr5B 506311416 506316675 5259 True 1109.866667 2926 91.680167 14 5354 6 chr5B.!!$R1 5340
2 TraesCS5D01G326600 chr5A 533552679 533557850 5171 True 963.000000 1701 89.183167 11 5354 6 chr5A.!!$R2 5343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.457853 TTTGCCTTCGACGGATCTCG 60.458 55.0 12.95 0.0 45.88 4.04 F
1110 1187 0.038159 CGAGAAAGAGCGAGGTTGGT 60.038 55.0 0.00 0.0 0.00 3.67 F
1697 1812 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.0 9.78 0.0 40.15 5.54 F
2488 2743 0.033796 ATGTACTCCCTTCGTCCCGA 60.034 55.0 0.00 0.0 0.00 5.14 F
2499 2754 0.109458 TCGTCCCGAATCACTTGTCG 60.109 55.0 0.00 0.0 37.01 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1793 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.3 9.3 0.00 2.18 R
2483 2738 0.389817 CTGCGACAAGTGATTCGGGA 60.390 55.000 0.0 0.0 35.73 5.14 R
2538 2793 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.0 0.0 39.69 3.06 R
4301 4762 0.386352 CGACATGCAACACAAGCTGG 60.386 55.000 0.0 0.0 0.00 4.85 R
4640 5174 8.158169 TCTCATGCATATCTGAATTTGTAACC 57.842 34.615 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.825836 GATGGTGGCGGCTTCCTG 60.826 66.667 19.88 0.00 0.00 3.86
25 26 4.431131 ATGGTGGCGGCTTCCTGG 62.431 66.667 19.88 0.00 0.00 4.45
49 50 1.630369 TGGAATGAGGTTCTCCCTGTG 59.370 52.381 0.00 0.00 46.51 3.66
67 68 4.839706 TAGCCCCCGTCCCGGTAC 62.840 72.222 0.00 0.00 46.80 3.34
77 78 0.609662 GTCCCGGTACTGGTGCTTTA 59.390 55.000 19.59 0.00 33.17 1.85
90 91 2.031930 GGTGCTTTAAACGTCGTTGGAA 59.968 45.455 12.12 6.50 0.00 3.53
122 123 0.457853 TTTGCCTTCGACGGATCTCG 60.458 55.000 12.95 0.00 45.88 4.04
134 136 1.301009 GATCTCGTGGGATTCGGCC 60.301 63.158 0.00 0.00 0.00 6.13
147 149 0.748729 TTCGGCCGGTGTTTGTCTTT 60.749 50.000 27.83 0.00 0.00 2.52
157 159 2.955660 GTGTTTGTCTTTGGTGGATCCA 59.044 45.455 11.44 11.44 45.60 3.41
173 175 1.358152 TCCACTTGGATCCGGTCTTT 58.642 50.000 7.39 0.00 39.78 2.52
174 176 1.702957 TCCACTTGGATCCGGTCTTTT 59.297 47.619 7.39 0.00 39.78 2.27
175 177 2.107552 TCCACTTGGATCCGGTCTTTTT 59.892 45.455 7.39 0.00 39.78 1.94
176 178 2.228822 CCACTTGGATCCGGTCTTTTTG 59.771 50.000 7.39 0.00 37.39 2.44
177 179 2.884639 CACTTGGATCCGGTCTTTTTGT 59.115 45.455 7.39 0.00 0.00 2.83
186 188 6.318900 GGATCCGGTCTTTTTGTTCATATCTT 59.681 38.462 0.00 0.00 0.00 2.40
187 189 6.737254 TCCGGTCTTTTTGTTCATATCTTC 57.263 37.500 0.00 0.00 0.00 2.87
198 200 6.510879 TGTTCATATCTTCGTGTGTCTACT 57.489 37.500 0.00 0.00 0.00 2.57
223 225 3.966154 TGGATCTTTTCGATCTACGCTC 58.034 45.455 0.00 0.00 46.33 5.03
234 236 1.309950 TCTACGCTCCTCTTCATCGG 58.690 55.000 0.00 0.00 0.00 4.18
244 246 4.690719 TTCATCGGCGGCGGTTGT 62.691 61.111 31.73 12.34 0.00 3.32
250 252 3.587933 GGCGGCGGTTGTTGTTCA 61.588 61.111 9.78 0.00 0.00 3.18
256 258 1.444119 GCGGTTGTTGTTCAGGAGCA 61.444 55.000 0.00 0.00 0.00 4.26
281 283 4.096003 TCTGGGGCCTTAGCACGC 62.096 66.667 0.84 0.00 46.55 5.34
288 290 1.502190 GCCTTAGCACGCCAACTTC 59.498 57.895 0.00 0.00 39.53 3.01
293 295 2.501223 TAGCACGCCAACTTCCCGAG 62.501 60.000 0.00 0.00 0.00 4.63
295 297 2.027625 CACGCCAACTTCCCGAGTC 61.028 63.158 0.00 0.00 37.72 3.36
325 327 3.868200 AAGGTTTGCCTGGCTCCGG 62.868 63.158 21.03 0.00 46.33 5.14
344 346 1.688884 TGATGGAGGGGCGATGACA 60.689 57.895 0.00 0.00 0.00 3.58
367 371 1.980232 CATGCCTGGCTTGCTCCAA 60.980 57.895 21.03 0.00 35.36 3.53
368 372 1.980772 ATGCCTGGCTTGCTCCAAC 60.981 57.895 21.03 0.00 35.36 3.77
385 390 1.519758 CAACGTTTGTAGTCGTCGCTT 59.480 47.619 0.00 0.00 39.39 4.68
416 421 9.242477 GTCTACGGACCTAGATGTAATTTTTAC 57.758 37.037 0.00 0.00 36.53 2.01
418 423 9.813446 CTACGGACCTAGATGTAATTTTTACTT 57.187 33.333 0.00 0.00 0.00 2.24
444 449 7.721402 TGGTTTTCTTTGTACTACGTACCTTA 58.279 34.615 0.00 0.00 38.14 2.69
576 582 7.042321 CCTTACGATTGAGAGAGTAGAGTACTG 60.042 44.444 0.00 0.00 39.59 2.74
651 661 7.509546 AGTGAGAAGAAACCAATCTACTTTCA 58.490 34.615 0.00 0.00 0.00 2.69
652 662 7.993183 AGTGAGAAGAAACCAATCTACTTTCAA 59.007 33.333 0.00 0.00 0.00 2.69
654 664 7.993183 TGAGAAGAAACCAATCTACTTTCAAGT 59.007 33.333 0.00 0.00 42.91 3.16
655 665 8.159344 AGAAGAAACCAATCTACTTTCAAGTG 57.841 34.615 2.26 0.00 40.07 3.16
657 667 7.736447 AGAAACCAATCTACTTTCAAGTGAG 57.264 36.000 2.26 0.00 40.07 3.51
658 668 7.283329 AGAAACCAATCTACTTTCAAGTGAGT 58.717 34.615 2.26 0.00 40.07 3.41
673 709 3.059884 AGTGAGTACATGTTGCTGTTCG 58.940 45.455 2.30 0.00 0.00 3.95
698 734 3.245518 TGGAATGTGTATGTGTCTCCG 57.754 47.619 0.00 0.00 0.00 4.63
754 790 2.197324 GGACCAACACCCAAGCCA 59.803 61.111 0.00 0.00 0.00 4.75
759 795 0.893270 CCAACACCCAAGCCAATCGA 60.893 55.000 0.00 0.00 0.00 3.59
856 895 1.808945 CAGGATTCGAAAGCAGCAAGT 59.191 47.619 0.00 0.00 0.00 3.16
971 1046 9.647918 CCCATGGACGGAGCTATATATATATAT 57.352 37.037 15.22 17.37 33.68 0.86
1101 1178 3.491652 GCACCGCCGAGAAAGAGC 61.492 66.667 0.00 0.00 0.00 4.09
1106 1183 2.574399 GCCGAGAAAGAGCGAGGT 59.426 61.111 0.00 0.00 0.00 3.85
1107 1184 1.079750 GCCGAGAAAGAGCGAGGTT 60.080 57.895 0.00 0.00 0.00 3.50
1108 1185 1.355066 GCCGAGAAAGAGCGAGGTTG 61.355 60.000 0.00 0.00 0.00 3.77
1109 1186 0.737715 CCGAGAAAGAGCGAGGTTGG 60.738 60.000 0.00 0.00 0.00 3.77
1110 1187 0.038159 CGAGAAAGAGCGAGGTTGGT 60.038 55.000 0.00 0.00 0.00 3.67
1111 1188 1.201647 CGAGAAAGAGCGAGGTTGGTA 59.798 52.381 0.00 0.00 0.00 3.25
1112 1189 2.732597 CGAGAAAGAGCGAGGTTGGTAG 60.733 54.545 0.00 0.00 0.00 3.18
1113 1190 1.066787 AGAAAGAGCGAGGTTGGTAGC 60.067 52.381 0.00 0.00 0.00 3.58
1114 1191 0.389948 AAAGAGCGAGGTTGGTAGCG 60.390 55.000 0.00 0.00 34.34 4.26
1119 1196 2.508663 GAGGTTGGTAGCGCGGTC 60.509 66.667 16.92 6.65 0.00 4.79
1464 1541 0.392998 CCAAGCTCGGCAACAGGTAT 60.393 55.000 0.00 0.00 0.00 2.73
1498 1581 1.897133 TCCCACGTACTTGCATGTACT 59.103 47.619 29.49 18.82 40.25 2.73
1500 1583 2.671396 CCCACGTACTTGCATGTACTTC 59.329 50.000 29.49 12.76 40.25 3.01
1503 1586 3.367932 CACGTACTTGCATGTACTTCCTG 59.632 47.826 29.49 20.16 40.25 3.86
1504 1587 3.006537 ACGTACTTGCATGTACTTCCTGT 59.993 43.478 29.49 20.64 40.25 4.00
1505 1588 3.612860 CGTACTTGCATGTACTTCCTGTC 59.387 47.826 29.49 10.50 40.25 3.51
1516 1606 4.826733 TGTACTTCCTGTCAAAATGCATGT 59.173 37.500 0.00 0.00 0.00 3.21
1517 1607 6.000840 TGTACTTCCTGTCAAAATGCATGTA 58.999 36.000 0.00 0.00 0.00 2.29
1518 1608 5.376854 ACTTCCTGTCAAAATGCATGTAC 57.623 39.130 0.00 0.00 0.00 2.90
1519 1609 4.826733 ACTTCCTGTCAAAATGCATGTACA 59.173 37.500 0.00 0.00 0.00 2.90
1567 1681 4.051922 CGATATGGTGGTCTGAAGCTTAC 58.948 47.826 0.00 0.00 0.00 2.34
1575 1689 1.903183 GTCTGAAGCTTACCCTCCAGT 59.097 52.381 0.00 0.00 0.00 4.00
1579 1693 2.838202 TGAAGCTTACCCTCCAGTTAGG 59.162 50.000 0.00 0.00 39.47 2.69
1599 1713 5.793030 AGGGTAAGATCGAACAGGATTAG 57.207 43.478 0.00 0.00 0.00 1.73
1648 1763 3.232720 TCCATGCATTCATATGGTGCT 57.767 42.857 24.51 13.58 43.43 4.40
1655 1770 4.708909 TGCATTCATATGGTGCTTGGTTAA 59.291 37.500 24.51 8.68 39.52 2.01
1656 1771 5.363292 TGCATTCATATGGTGCTTGGTTAAT 59.637 36.000 24.51 4.89 39.52 1.40
1657 1772 5.693104 GCATTCATATGGTGCTTGGTTAATG 59.307 40.000 20.04 11.99 36.02 1.90
1658 1773 6.683610 GCATTCATATGGTGCTTGGTTAATGT 60.684 38.462 20.04 0.00 36.02 2.71
1659 1774 6.449635 TTCATATGGTGCTTGGTTAATGTC 57.550 37.500 2.13 0.00 0.00 3.06
1660 1775 5.504853 TCATATGGTGCTTGGTTAATGTCA 58.495 37.500 2.13 0.00 0.00 3.58
1661 1776 6.128486 TCATATGGTGCTTGGTTAATGTCAT 58.872 36.000 2.13 0.00 0.00 3.06
1662 1777 7.286313 TCATATGGTGCTTGGTTAATGTCATA 58.714 34.615 2.13 0.00 0.00 2.15
1663 1778 7.445096 TCATATGGTGCTTGGTTAATGTCATAG 59.555 37.037 2.13 0.00 0.00 2.23
1664 1779 4.917385 TGGTGCTTGGTTAATGTCATAGT 58.083 39.130 0.00 0.00 0.00 2.12
1665 1780 5.321102 TGGTGCTTGGTTAATGTCATAGTT 58.679 37.500 0.00 0.00 0.00 2.24
1666 1781 5.772672 TGGTGCTTGGTTAATGTCATAGTTT 59.227 36.000 0.00 0.00 0.00 2.66
1667 1782 6.266558 TGGTGCTTGGTTAATGTCATAGTTTT 59.733 34.615 0.00 0.00 0.00 2.43
1668 1783 7.448777 TGGTGCTTGGTTAATGTCATAGTTTTA 59.551 33.333 0.00 0.00 0.00 1.52
1669 1784 8.301002 GGTGCTTGGTTAATGTCATAGTTTTAA 58.699 33.333 0.00 0.00 0.00 1.52
1670 1785 9.685828 GTGCTTGGTTAATGTCATAGTTTTAAA 57.314 29.630 0.00 0.00 0.00 1.52
1676 1791 9.166126 GGTTAATGTCATAGTTTTAAATAGCGC 57.834 33.333 0.00 0.00 0.00 5.92
1677 1792 8.879299 GTTAATGTCATAGTTTTAAATAGCGCG 58.121 33.333 0.00 0.00 0.00 6.86
1678 1793 4.828704 TGTCATAGTTTTAAATAGCGCGC 58.171 39.130 26.66 26.66 0.00 6.86
1679 1794 4.569162 TGTCATAGTTTTAAATAGCGCGCT 59.431 37.500 38.01 38.01 0.00 5.92
1680 1795 5.749588 TGTCATAGTTTTAAATAGCGCGCTA 59.250 36.000 39.72 39.72 0.00 4.26
1681 1796 6.256104 TGTCATAGTTTTAAATAGCGCGCTAA 59.744 34.615 40.90 26.03 31.73 3.09
1682 1797 6.786103 GTCATAGTTTTAAATAGCGCGCTAAG 59.214 38.462 40.90 16.23 31.73 2.18
1683 1798 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
1695 1810 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
1696 1811 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
1697 1812 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
1698 1813 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
1699 1814 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
1700 1815 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
1701 1816 1.144057 CATCTTAGCGGCGGACCTT 59.856 57.895 9.78 0.00 0.00 3.50
1702 1817 0.462047 CATCTTAGCGGCGGACCTTT 60.462 55.000 9.78 0.00 0.00 3.11
1703 1818 0.252197 ATCTTAGCGGCGGACCTTTT 59.748 50.000 9.78 0.00 0.00 2.27
1704 1819 0.390735 TCTTAGCGGCGGACCTTTTC 60.391 55.000 9.78 0.00 0.00 2.29
1705 1820 1.366854 CTTAGCGGCGGACCTTTTCC 61.367 60.000 9.78 0.00 41.75 3.13
1706 1821 2.114488 TTAGCGGCGGACCTTTTCCA 62.114 55.000 9.78 0.00 46.29 3.53
1707 1822 2.114488 TAGCGGCGGACCTTTTCCAA 62.114 55.000 9.78 0.00 46.29 3.53
1708 1823 2.557372 GCGGCGGACCTTTTCCAAA 61.557 57.895 9.78 0.00 46.29 3.28
1709 1824 1.873270 GCGGCGGACCTTTTCCAAAT 61.873 55.000 9.78 0.00 46.29 2.32
1710 1825 0.109319 CGGCGGACCTTTTCCAAATG 60.109 55.000 0.00 0.00 46.29 2.32
1711 1826 0.389817 GGCGGACCTTTTCCAAATGC 60.390 55.000 0.00 0.00 46.29 3.56
1712 1827 0.603065 GCGGACCTTTTCCAAATGCT 59.397 50.000 0.00 0.00 46.29 3.79
1713 1828 1.816224 GCGGACCTTTTCCAAATGCTA 59.184 47.619 0.00 0.00 46.29 3.49
1714 1829 2.427095 GCGGACCTTTTCCAAATGCTAT 59.573 45.455 0.00 0.00 46.29 2.97
1715 1830 3.630312 GCGGACCTTTTCCAAATGCTATA 59.370 43.478 0.00 0.00 46.29 1.31
1716 1831 4.261197 GCGGACCTTTTCCAAATGCTATAG 60.261 45.833 0.00 0.00 46.29 1.31
1717 1832 4.261197 CGGACCTTTTCCAAATGCTATAGC 60.261 45.833 18.18 18.18 46.29 2.97
1718 1833 4.261197 GGACCTTTTCCAAATGCTATAGCG 60.261 45.833 19.55 5.29 45.10 4.26
1719 1834 4.270008 ACCTTTTCCAAATGCTATAGCGT 58.730 39.130 19.55 16.84 45.83 5.07
1720 1835 4.096382 ACCTTTTCCAAATGCTATAGCGTG 59.904 41.667 20.02 16.14 45.83 5.34
1721 1836 3.691049 TTTCCAAATGCTATAGCGTGC 57.309 42.857 20.02 0.00 45.83 5.34
1722 1837 2.620251 TCCAAATGCTATAGCGTGCT 57.380 45.000 20.02 7.98 45.83 4.40
1723 1838 3.744238 TCCAAATGCTATAGCGTGCTA 57.256 42.857 20.02 3.73 45.83 3.49
1724 1839 4.271696 TCCAAATGCTATAGCGTGCTAT 57.728 40.909 20.02 17.65 45.83 2.97
1725 1840 5.400066 TCCAAATGCTATAGCGTGCTATA 57.600 39.130 20.02 17.96 45.83 1.31
1731 1846 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1732 1847 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1754 1869 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
1755 1870 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
1756 1871 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
1757 1872 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
1758 1873 3.303229 AGCGCGCTATTTAAAATGTTTGC 59.697 39.130 35.79 0.00 0.00 3.68
1759 1874 3.303229 GCGCGCTATTTAAAATGTTTGCT 59.697 39.130 26.67 0.00 0.00 3.91
1760 1875 4.546268 GCGCGCTATTTAAAATGTTTGCTC 60.546 41.667 26.67 0.00 0.00 4.26
1761 1876 4.556912 CGCGCTATTTAAAATGTTTGCTCA 59.443 37.500 5.56 0.00 0.00 4.26
1762 1877 5.229887 CGCGCTATTTAAAATGTTTGCTCAT 59.770 36.000 5.56 0.00 0.00 2.90
1763 1878 6.237542 CGCGCTATTTAAAATGTTTGCTCATT 60.238 34.615 5.56 0.00 39.35 2.57
1764 1879 7.455447 GCGCTATTTAAAATGTTTGCTCATTT 58.545 30.769 0.00 8.46 45.94 2.32
1765 1880 7.423314 GCGCTATTTAAAATGTTTGCTCATTTG 59.577 33.333 0.00 4.57 44.10 2.32
1766 1881 8.434661 CGCTATTTAAAATGTTTGCTCATTTGT 58.565 29.630 12.85 8.12 44.10 2.83
1770 1885 9.733219 ATTTAAAATGTTTGCTCATTTGTTTGG 57.267 25.926 12.85 0.00 44.10 3.28
1771 1886 6.998968 AAAATGTTTGCTCATTTGTTTGGA 57.001 29.167 12.85 0.00 44.10 3.53
1772 1887 5.989551 AATGTTTGCTCATTTGTTTGGAC 57.010 34.783 0.00 0.00 34.86 4.02
1773 1888 3.791245 TGTTTGCTCATTTGTTTGGACC 58.209 40.909 0.00 0.00 0.00 4.46
1774 1889 3.196469 TGTTTGCTCATTTGTTTGGACCA 59.804 39.130 0.00 0.00 0.00 4.02
1775 1890 4.187694 GTTTGCTCATTTGTTTGGACCAA 58.812 39.130 1.69 1.69 0.00 3.67
1776 1891 4.478206 TTGCTCATTTGTTTGGACCAAA 57.522 36.364 15.89 15.89 36.34 3.28
1777 1892 4.057406 TGCTCATTTGTTTGGACCAAAG 57.943 40.909 20.14 8.25 35.45 2.77
1778 1893 3.450457 TGCTCATTTGTTTGGACCAAAGT 59.550 39.130 20.14 4.29 35.45 2.66
1779 1894 4.051237 GCTCATTTGTTTGGACCAAAGTC 58.949 43.478 20.14 10.01 42.73 3.01
1780 1895 4.202151 GCTCATTTGTTTGGACCAAAGTCT 60.202 41.667 20.14 2.95 43.05 3.24
1781 1896 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
1782 1897 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
1783 1898 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
1784 1899 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
1785 1900 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
1786 1901 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
1787 1902 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
1788 1903 1.968493 TGGACCAAAGTCTCTTAGCGT 59.032 47.619 0.00 0.00 43.05 5.07
1789 1904 3.159472 TGGACCAAAGTCTCTTAGCGTA 58.841 45.455 0.00 0.00 43.05 4.42
1790 1905 3.575256 TGGACCAAAGTCTCTTAGCGTAA 59.425 43.478 0.00 0.00 43.05 3.18
1791 1906 4.174762 GGACCAAAGTCTCTTAGCGTAAG 58.825 47.826 0.00 0.00 43.05 2.34
1792 1907 4.082354 GGACCAAAGTCTCTTAGCGTAAGA 60.082 45.833 7.10 7.10 43.05 2.10
1793 1908 4.807443 ACCAAAGTCTCTTAGCGTAAGAC 58.193 43.478 4.12 4.14 39.73 3.01
1794 1909 4.174762 CCAAAGTCTCTTAGCGTAAGACC 58.825 47.826 7.62 1.30 39.73 3.85
1795 1910 4.082136 CCAAAGTCTCTTAGCGTAAGACCT 60.082 45.833 7.62 3.00 39.73 3.85
1796 1911 5.471257 CAAAGTCTCTTAGCGTAAGACCTT 58.529 41.667 7.62 7.25 39.73 3.50
1797 1912 5.725325 AAGTCTCTTAGCGTAAGACCTTT 57.275 39.130 7.62 0.00 39.73 3.11
1798 1913 5.725325 AGTCTCTTAGCGTAAGACCTTTT 57.275 39.130 7.62 0.00 39.73 2.27
1799 1914 5.471257 AGTCTCTTAGCGTAAGACCTTTTG 58.529 41.667 7.62 0.00 39.73 2.44
1800 1915 5.010820 AGTCTCTTAGCGTAAGACCTTTTGT 59.989 40.000 7.62 0.00 39.73 2.83
1801 1916 6.208204 AGTCTCTTAGCGTAAGACCTTTTGTA 59.792 38.462 7.62 0.00 39.73 2.41
1802 1917 6.865205 GTCTCTTAGCGTAAGACCTTTTGTAA 59.135 38.462 4.12 0.00 39.73 2.41
1803 1918 7.383300 GTCTCTTAGCGTAAGACCTTTTGTAAA 59.617 37.037 4.12 0.00 39.73 2.01
1804 1919 7.383300 TCTCTTAGCGTAAGACCTTTTGTAAAC 59.617 37.037 4.12 0.00 39.73 2.01
1805 1920 4.720530 AGCGTAAGACCTTTTGTAAACG 57.279 40.909 0.00 0.00 43.02 3.60
1806 1921 3.059393 AGCGTAAGACCTTTTGTAAACGC 60.059 43.478 14.10 14.10 45.41 4.84
1807 1922 3.059393 GCGTAAGACCTTTTGTAAACGCT 60.059 43.478 14.47 0.00 43.49 5.07
1808 1923 4.150451 GCGTAAGACCTTTTGTAAACGCTA 59.850 41.667 14.47 0.00 43.49 4.26
1809 1924 5.163923 GCGTAAGACCTTTTGTAAACGCTAT 60.164 40.000 14.47 0.00 43.49 2.97
1810 1925 6.034898 GCGTAAGACCTTTTGTAAACGCTATA 59.965 38.462 14.47 0.00 43.49 1.31
1811 1926 7.607005 CGTAAGACCTTTTGTAAACGCTATAG 58.393 38.462 0.00 0.00 43.02 1.31
1812 1927 6.418585 AAGACCTTTTGTAAACGCTATAGC 57.581 37.500 15.09 15.09 37.78 2.97
1826 1941 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1827 1942 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1848 1963 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
1849 1964 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
1850 1965 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
1851 1966 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
1852 1967 2.752903 AGCGGGCTATTTAAAACAGTGG 59.247 45.455 0.00 0.00 0.00 4.00
1853 1968 2.490509 GCGGGCTATTTAAAACAGTGGT 59.509 45.455 0.00 0.00 0.00 4.16
1854 1969 3.057104 GCGGGCTATTTAAAACAGTGGTT 60.057 43.478 0.00 0.00 39.43 3.67
1855 1970 4.156373 GCGGGCTATTTAAAACAGTGGTTA 59.844 41.667 0.00 0.00 35.82 2.85
1920 2035 0.387565 GCTAGCCAGAGAGTAGCCAC 59.612 60.000 2.29 0.00 34.30 5.01
1956 2071 8.278408 CGCCATGATGTATATATGTTCTAATGC 58.722 37.037 0.00 0.00 0.00 3.56
1969 2084 7.706281 ATGTTCTAATGCTAAGTCTTGATCG 57.294 36.000 0.00 0.00 0.00 3.69
1970 2085 6.863275 TGTTCTAATGCTAAGTCTTGATCGA 58.137 36.000 0.00 0.00 0.00 3.59
1971 2086 7.492524 TGTTCTAATGCTAAGTCTTGATCGAT 58.507 34.615 0.00 0.00 0.00 3.59
1972 2087 7.649705 TGTTCTAATGCTAAGTCTTGATCGATC 59.350 37.037 18.72 18.72 0.00 3.69
1973 2088 6.374578 TCTAATGCTAAGTCTTGATCGATCG 58.625 40.000 20.03 9.36 0.00 3.69
1974 2089 4.837896 ATGCTAAGTCTTGATCGATCGA 57.162 40.909 21.86 21.86 0.00 3.59
2004 2119 4.662145 CTGTTGAGTCCAAACAACTTCAC 58.338 43.478 0.00 0.00 44.25 3.18
2028 2143 3.254411 TGTCAAGAGCACACACACAAAAA 59.746 39.130 0.00 0.00 0.00 1.94
2089 2284 6.127535 GGTGTGAGCTACAAGGTAGTATGTAA 60.128 42.308 5.41 0.00 41.89 2.41
2169 2370 0.179137 TGTGACATCGATCGTGCCTC 60.179 55.000 15.94 6.99 0.00 4.70
2172 2373 2.337749 GACATCGATCGTGCCTCGGT 62.338 60.000 15.94 4.10 40.32 4.69
2223 2429 5.163205 CCACCACTGAAATGATATGGGAGTA 60.163 44.000 0.00 0.00 34.56 2.59
2224 2430 5.760253 CACCACTGAAATGATATGGGAGTAC 59.240 44.000 0.00 0.00 34.56 2.73
2248 2454 5.525484 TGATTTAAGCAGTAGTCCCCTCTA 58.475 41.667 0.00 0.00 0.00 2.43
2288 2494 7.540745 ACATGTTATTTCCGTTGAGCAATTAAC 59.459 33.333 0.00 0.00 0.00 2.01
2292 2498 5.957842 TTTCCGTTGAGCAATTAACAGAT 57.042 34.783 0.00 0.00 0.00 2.90
2293 2499 5.545658 TTCCGTTGAGCAATTAACAGATC 57.454 39.130 0.00 0.00 0.00 2.75
2305 2520 5.897377 ATTAACAGATCCGGGTTGAAAAG 57.103 39.130 0.00 0.00 0.00 2.27
2358 2613 6.432783 TCCACATACCACTGGAAATTGTAAAG 59.567 38.462 0.71 0.00 33.39 1.85
2363 2618 5.329399 ACCACTGGAAATTGTAAAGCCATA 58.671 37.500 0.71 0.00 0.00 2.74
2389 2644 7.867909 AGCGAAATATGTCATCGAAGAATAAGA 59.132 33.333 0.00 0.00 43.58 2.10
2396 2651 6.687604 TGTCATCGAAGAATAAGAGTGACAA 58.312 36.000 8.30 0.00 43.58 3.18
2397 2652 7.323420 TGTCATCGAAGAATAAGAGTGACAAT 58.677 34.615 8.30 0.00 43.58 2.71
2398 2653 7.819415 TGTCATCGAAGAATAAGAGTGACAATT 59.181 33.333 8.30 0.00 43.58 2.32
2477 2732 3.299340 ACACACGAACTGATGTACTCC 57.701 47.619 0.00 0.00 0.00 3.85
2478 2733 2.029290 ACACACGAACTGATGTACTCCC 60.029 50.000 0.00 0.00 0.00 4.30
2479 2734 2.231478 CACACGAACTGATGTACTCCCT 59.769 50.000 0.00 0.00 0.00 4.20
2480 2735 2.897969 ACACGAACTGATGTACTCCCTT 59.102 45.455 0.00 0.00 0.00 3.95
2481 2736 3.056749 ACACGAACTGATGTACTCCCTTC 60.057 47.826 0.00 0.00 0.00 3.46
2482 2737 2.163815 ACGAACTGATGTACTCCCTTCG 59.836 50.000 0.00 7.04 37.60 3.79
2483 2738 2.163815 CGAACTGATGTACTCCCTTCGT 59.836 50.000 0.00 0.00 31.74 3.85
2484 2739 3.731264 CGAACTGATGTACTCCCTTCGTC 60.731 52.174 0.00 0.00 31.74 4.20
2485 2740 2.100989 ACTGATGTACTCCCTTCGTCC 58.899 52.381 0.00 0.00 0.00 4.79
2486 2741 1.409427 CTGATGTACTCCCTTCGTCCC 59.591 57.143 0.00 0.00 0.00 4.46
2487 2742 0.384669 GATGTACTCCCTTCGTCCCG 59.615 60.000 0.00 0.00 0.00 5.14
2488 2743 0.033796 ATGTACTCCCTTCGTCCCGA 60.034 55.000 0.00 0.00 0.00 5.14
2489 2744 0.251297 TGTACTCCCTTCGTCCCGAA 60.251 55.000 0.00 0.00 43.75 4.30
2490 2745 1.109609 GTACTCCCTTCGTCCCGAAT 58.890 55.000 0.00 0.00 44.85 3.34
2491 2746 1.066757 GTACTCCCTTCGTCCCGAATC 59.933 57.143 0.00 0.00 44.85 2.52
2492 2747 0.613853 ACTCCCTTCGTCCCGAATCA 60.614 55.000 0.00 0.00 44.85 2.57
2493 2748 0.179108 CTCCCTTCGTCCCGAATCAC 60.179 60.000 0.00 0.00 44.85 3.06
2494 2749 0.613853 TCCCTTCGTCCCGAATCACT 60.614 55.000 0.00 0.00 44.85 3.41
2495 2750 0.249398 CCCTTCGTCCCGAATCACTT 59.751 55.000 0.00 0.00 44.85 3.16
2496 2751 1.359848 CCTTCGTCCCGAATCACTTG 58.640 55.000 0.00 0.00 44.85 3.16
2497 2752 1.337823 CCTTCGTCCCGAATCACTTGT 60.338 52.381 0.00 0.00 44.85 3.16
2498 2753 1.993370 CTTCGTCCCGAATCACTTGTC 59.007 52.381 0.00 0.00 44.85 3.18
2499 2754 0.109458 TCGTCCCGAATCACTTGTCG 60.109 55.000 0.00 0.00 37.01 4.35
2500 2755 1.683790 CGTCCCGAATCACTTGTCGC 61.684 60.000 0.00 0.00 35.93 5.19
2501 2756 0.669318 GTCCCGAATCACTTGTCGCA 60.669 55.000 0.00 0.00 35.93 5.10
2502 2757 0.389817 TCCCGAATCACTTGTCGCAG 60.390 55.000 0.00 0.00 35.93 5.18
2503 2758 1.361668 CCCGAATCACTTGTCGCAGG 61.362 60.000 0.00 0.00 35.93 4.85
2504 2759 0.670546 CCGAATCACTTGTCGCAGGT 60.671 55.000 0.00 0.00 35.93 4.00
2505 2760 1.403647 CCGAATCACTTGTCGCAGGTA 60.404 52.381 0.00 0.00 35.93 3.08
2506 2761 2.540515 CGAATCACTTGTCGCAGGTAT 58.459 47.619 0.00 0.00 0.00 2.73
2507 2762 2.282555 CGAATCACTTGTCGCAGGTATG 59.717 50.000 0.00 0.00 0.00 2.39
2508 2763 2.315925 ATCACTTGTCGCAGGTATGG 57.684 50.000 0.00 0.00 0.00 2.74
2509 2764 1.262417 TCACTTGTCGCAGGTATGGA 58.738 50.000 0.00 0.00 0.00 3.41
2510 2765 1.831106 TCACTTGTCGCAGGTATGGAT 59.169 47.619 0.00 0.00 0.00 3.41
2511 2766 1.935873 CACTTGTCGCAGGTATGGATG 59.064 52.381 0.00 0.00 0.00 3.51
2512 2767 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2513 2768 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2514 2769 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2515 2770 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2516 2771 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2517 2772 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2518 2773 4.830600 TGTCGCAGGTATGGATGTATCTAA 59.169 41.667 0.00 0.00 0.00 2.10
2519 2774 5.303333 TGTCGCAGGTATGGATGTATCTAAA 59.697 40.000 0.00 0.00 0.00 1.85
2520 2775 6.014584 TGTCGCAGGTATGGATGTATCTAAAT 60.015 38.462 0.00 0.00 0.00 1.40
2521 2776 6.311445 GTCGCAGGTATGGATGTATCTAAATG 59.689 42.308 0.00 0.00 0.00 2.32
2522 2777 6.014584 TCGCAGGTATGGATGTATCTAAATGT 60.015 38.462 0.00 0.00 0.00 2.71
2523 2778 7.177744 TCGCAGGTATGGATGTATCTAAATGTA 59.822 37.037 0.00 0.00 0.00 2.29
2524 2779 7.981789 CGCAGGTATGGATGTATCTAAATGTAT 59.018 37.037 0.00 0.00 0.00 2.29
2525 2780 9.672673 GCAGGTATGGATGTATCTAAATGTATT 57.327 33.333 0.00 0.00 0.00 1.89
2551 2806 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2552 2807 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2553 2808 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2554 2809 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2555 2810 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2556 2811 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2557 2812 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2558 2813 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2559 2814 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2560 2815 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2561 2816 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2562 2817 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2563 2818 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2564 2819 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2565 2820 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2566 2821 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2567 2822 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2568 2823 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2569 2824 2.734606 CTGCGACGAGTAATTTGGAACA 59.265 45.455 0.00 0.00 0.00 3.18
2570 2825 2.734606 TGCGACGAGTAATTTGGAACAG 59.265 45.455 0.00 0.00 42.39 3.16
2571 2826 2.991190 GCGACGAGTAATTTGGAACAGA 59.009 45.455 0.00 0.00 42.39 3.41
2572 2827 3.060895 GCGACGAGTAATTTGGAACAGAG 59.939 47.826 0.00 0.00 42.39 3.35
2573 2828 3.612860 CGACGAGTAATTTGGAACAGAGG 59.387 47.826 0.00 0.00 42.39 3.69
2574 2829 3.933332 GACGAGTAATTTGGAACAGAGGG 59.067 47.826 0.00 0.00 42.39 4.30
2575 2830 3.581332 ACGAGTAATTTGGAACAGAGGGA 59.419 43.478 0.00 0.00 42.39 4.20
2576 2831 4.184629 CGAGTAATTTGGAACAGAGGGAG 58.815 47.826 0.00 0.00 42.39 4.30
2577 2832 4.081642 CGAGTAATTTGGAACAGAGGGAGA 60.082 45.833 0.00 0.00 42.39 3.71
2578 2833 5.568825 CGAGTAATTTGGAACAGAGGGAGAA 60.569 44.000 0.00 0.00 42.39 2.87
2583 2838 6.838401 ATTTGGAACAGAGGGAGAAGATAT 57.162 37.500 0.00 0.00 42.39 1.63
2616 2872 4.023291 AGTATGGGCGGAACAAATGAATT 58.977 39.130 0.00 0.00 0.00 2.17
2632 2888 8.537049 CAAATGAATTGTCCTTAATGCAAAGA 57.463 30.769 0.00 0.00 34.16 2.52
2750 3009 4.849810 TCTAGCTCTAGCCTCTAGGAATCT 59.150 45.833 0.00 0.00 43.38 2.40
2766 3025 9.929180 TCTAGGAATCTTAAACATGGAATATCG 57.071 33.333 0.00 0.00 0.00 2.92
2815 3074 5.590259 CCCTCTTCTCAAAAGAAAGTGTCAA 59.410 40.000 0.00 0.00 40.95 3.18
2873 3132 6.348786 GGCATACAATGATACAAGTGGCATAG 60.349 42.308 0.00 0.00 0.00 2.23
2874 3133 6.605849 CATACAATGATACAAGTGGCATAGC 58.394 40.000 0.00 0.00 0.00 2.97
2876 3135 2.238942 TGATACAAGTGGCATAGCGG 57.761 50.000 0.00 0.00 0.00 5.52
2877 3136 0.868406 GATACAAGTGGCATAGCGGC 59.132 55.000 0.00 0.00 41.67 6.53
3009 3270 0.890996 GTGTGGCTGAGGAAACCCTG 60.891 60.000 0.00 0.00 33.25 4.45
3122 3383 8.294954 TCTACCAACCACTTTTGTTATTTTGA 57.705 30.769 0.00 0.00 0.00 2.69
3156 3417 3.939592 GGCTACTCGGCTTTAAGAAACAT 59.060 43.478 0.00 0.00 34.85 2.71
3357 3618 1.217882 ACTCAGTTGGCTTTCGTTCG 58.782 50.000 0.00 0.00 0.00 3.95
3371 3632 6.289901 GCTTTCGTTCGTATATAAGCATCAC 58.710 40.000 0.00 0.00 38.23 3.06
3382 3643 4.700268 ATAAGCATCACGTTTGCATGAA 57.300 36.364 19.30 5.14 42.62 2.57
3384 3645 1.881973 AGCATCACGTTTGCATGAAGT 59.118 42.857 19.30 0.00 42.62 3.01
3386 3647 2.406024 GCATCACGTTTGCATGAAGTTG 59.594 45.455 13.86 0.00 39.90 3.16
3389 3650 5.393124 CATCACGTTTGCATGAAGTTGTAT 58.607 37.500 0.00 0.00 0.00 2.29
3391 3652 5.211454 TCACGTTTGCATGAAGTTGTATTG 58.789 37.500 0.00 0.00 0.00 1.90
3432 3693 9.626045 GGTACTCATTTTTCTCTAATTTGGTTG 57.374 33.333 0.00 0.00 0.00 3.77
3452 3873 6.657541 TGGTTGTGTTTTAGAAGATATGGACC 59.342 38.462 0.00 0.00 0.00 4.46
3453 3874 6.657541 GGTTGTGTTTTAGAAGATATGGACCA 59.342 38.462 0.00 0.00 0.00 4.02
3454 3875 7.175990 GGTTGTGTTTTAGAAGATATGGACCAA 59.824 37.037 0.00 0.00 0.00 3.67
3455 3876 7.921786 TGTGTTTTAGAAGATATGGACCAAG 57.078 36.000 0.00 0.00 0.00 3.61
3456 3877 7.458397 TGTGTTTTAGAAGATATGGACCAAGT 58.542 34.615 0.00 0.00 0.00 3.16
3457 3878 7.942341 TGTGTTTTAGAAGATATGGACCAAGTT 59.058 33.333 0.00 0.00 0.00 2.66
3458 3879 8.793592 GTGTTTTAGAAGATATGGACCAAGTTT 58.206 33.333 0.00 0.00 0.00 2.66
3459 3880 9.010029 TGTTTTAGAAGATATGGACCAAGTTTC 57.990 33.333 0.00 0.88 0.00 2.78
3460 3881 9.010029 GTTTTAGAAGATATGGACCAAGTTTCA 57.990 33.333 0.00 0.00 0.00 2.69
3461 3882 9.753674 TTTTAGAAGATATGGACCAAGTTTCAT 57.246 29.630 0.00 0.00 0.00 2.57
3463 3884 9.832445 TTAGAAGATATGGACCAAGTTTCATAC 57.168 33.333 0.00 0.00 0.00 2.39
3464 3885 8.095452 AGAAGATATGGACCAAGTTTCATACT 57.905 34.615 0.00 0.00 39.32 2.12
3465 3886 7.989741 AGAAGATATGGACCAAGTTTCATACTG 59.010 37.037 0.00 0.00 37.12 2.74
3466 3887 7.437713 AGATATGGACCAAGTTTCATACTGA 57.562 36.000 0.00 0.00 37.12 3.41
3467 3888 7.861629 AGATATGGACCAAGTTTCATACTGAA 58.138 34.615 0.00 0.00 37.12 3.02
3468 3889 8.328758 AGATATGGACCAAGTTTCATACTGAAA 58.671 33.333 0.00 0.00 43.37 2.69
3469 3890 9.125026 GATATGGACCAAGTTTCATACTGAAAT 57.875 33.333 0.00 0.00 46.55 2.17
3470 3891 6.573664 TGGACCAAGTTTCATACTGAAATG 57.426 37.500 5.67 1.93 46.55 2.32
3471 3892 6.303054 TGGACCAAGTTTCATACTGAAATGA 58.697 36.000 5.67 0.00 46.55 2.57
3472 3893 6.206634 TGGACCAAGTTTCATACTGAAATGAC 59.793 38.462 5.67 0.00 46.55 3.06
3473 3894 6.349363 GGACCAAGTTTCATACTGAAATGACC 60.349 42.308 5.67 5.24 46.55 4.02
3474 3895 6.306987 ACCAAGTTTCATACTGAAATGACCT 58.693 36.000 5.67 0.00 46.55 3.85
3475 3896 6.431234 ACCAAGTTTCATACTGAAATGACCTC 59.569 38.462 5.67 0.00 46.55 3.85
3476 3897 6.402550 CCAAGTTTCATACTGAAATGACCTCG 60.403 42.308 5.67 0.00 46.55 4.63
3477 3898 4.631813 AGTTTCATACTGAAATGACCTCGC 59.368 41.667 5.67 0.00 46.55 5.03
3478 3899 3.885724 TCATACTGAAATGACCTCGCA 57.114 42.857 0.00 0.00 30.92 5.10
3479 3900 4.200838 TCATACTGAAATGACCTCGCAA 57.799 40.909 0.00 0.00 30.92 4.85
3480 3901 4.574892 TCATACTGAAATGACCTCGCAAA 58.425 39.130 0.00 0.00 30.92 3.68
3481 3902 5.000591 TCATACTGAAATGACCTCGCAAAA 58.999 37.500 0.00 0.00 30.92 2.44
3482 3903 5.471797 TCATACTGAAATGACCTCGCAAAAA 59.528 36.000 0.00 0.00 30.92 1.94
3680 4141 1.203052 AGATGGTCCAAAATTGCTGCG 59.797 47.619 0.00 0.00 0.00 5.18
3827 4288 2.571653 ACAAGCTAGCCTATCCACAACA 59.428 45.455 12.13 0.00 0.00 3.33
3854 4315 2.168521 ACAATCCTCGACCATCACGATT 59.831 45.455 0.00 0.00 39.02 3.34
3910 4371 3.943381 CAGCAGGACACACACATCAATAT 59.057 43.478 0.00 0.00 0.00 1.28
3986 4447 2.673862 CACAAACACCGACAACACTACA 59.326 45.455 0.00 0.00 0.00 2.74
3987 4448 3.125487 CACAAACACCGACAACACTACAA 59.875 43.478 0.00 0.00 0.00 2.41
4004 4465 0.521291 CAAGTGGTACCAACGGCATG 59.479 55.000 18.31 3.49 0.00 4.06
4013 4474 1.585517 CAACGGCATGCATGACCAA 59.414 52.632 30.64 0.00 29.87 3.67
4043 4504 0.694771 TGAAGTGGCTGCTGGAAGAT 59.305 50.000 0.00 0.00 34.07 2.40
4145 4606 1.005097 AGCATTCCTTCTGCCATGTCA 59.995 47.619 0.00 0.00 40.56 3.58
4217 4678 1.542547 GGGGACTCGAGTTTGCTTGAA 60.543 52.381 21.08 0.00 34.89 2.69
4253 4714 3.005554 CGACAGCTCAAGTGGATCAAAT 58.994 45.455 0.00 0.00 0.00 2.32
4268 4729 8.499406 AGTGGATCAAATCTCTAGTAGTCTAGT 58.501 37.037 0.00 0.00 42.88 2.57
4301 4762 5.467902 TTGCAAACAACTGAAGAAAATGC 57.532 34.783 0.00 0.00 0.00 3.56
4406 4876 6.509418 TGCATTTTGGTAAGGTGTAGAATC 57.491 37.500 0.00 0.00 0.00 2.52
4640 5174 6.922247 AATACATGATCAAAGTGAGCTCAG 57.078 37.500 18.89 5.39 33.24 3.35
4741 5278 9.442047 AAACTGGATGTAGATTTCTCAGTAAAG 57.558 33.333 0.00 0.00 34.17 1.85
4869 5411 8.638685 ATGCATTGTTAAGTTATTGCATCTTC 57.361 30.769 13.21 0.00 44.95 2.87
4879 5421 5.884232 AGTTATTGCATCTTCAAGAGCATGA 59.116 36.000 11.00 0.78 36.80 3.07
4885 5427 7.160547 TGCATCTTCAAGAGCATGAATTTTA 57.839 32.000 0.00 0.00 38.55 1.52
4919 5461 4.383850 TGCATGTGTTGTGCTTAACTTT 57.616 36.364 0.00 0.00 42.92 2.66
4926 5468 5.205565 GTGTTGTGCTTAACTTTAGTGCTC 58.794 41.667 5.49 0.00 0.00 4.26
5041 5583 8.647143 ATTTGCATGGTAGTTATGTTTTATGC 57.353 30.769 0.00 0.00 39.89 3.14
5100 5642 0.593128 ATCCAACAACGCAACTGAGC 59.407 50.000 0.00 0.00 0.00 4.26
5138 5680 7.831193 AGTTGATTAGTCATAAAGATGGCACTT 59.169 33.333 0.00 0.00 40.38 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.461773 CCGCCACCATCTCGTCCT 61.462 66.667 0.00 0.00 0.00 3.85
2 3 3.665675 AAGCCGCCACCATCTCGTC 62.666 63.158 0.00 0.00 0.00 4.20
3 4 3.665675 GAAGCCGCCACCATCTCGT 62.666 63.158 0.00 0.00 0.00 4.18
4 5 2.892425 GAAGCCGCCACCATCTCG 60.892 66.667 0.00 0.00 0.00 4.04
5 6 2.514824 GGAAGCCGCCACCATCTC 60.515 66.667 0.00 0.00 0.00 2.75
6 7 3.011517 AGGAAGCCGCCACCATCT 61.012 61.111 6.28 0.00 0.00 2.90
7 8 2.825836 CAGGAAGCCGCCACCATC 60.826 66.667 6.28 0.00 0.00 3.51
8 9 4.431131 CCAGGAAGCCGCCACCAT 62.431 66.667 6.28 0.00 0.00 3.55
24 25 3.483808 GGAGAACCTCATTCCATCTCC 57.516 52.381 4.53 4.53 46.63 3.71
25 26 3.483808 GGGAGAACCTCATTCCATCTC 57.516 52.381 0.00 0.00 38.16 2.75
67 68 2.601266 CCAACGACGTTTAAAGCACCAG 60.601 50.000 11.24 0.00 0.00 4.00
77 78 1.011333 CACACCTTCCAACGACGTTT 58.989 50.000 11.24 0.00 0.00 3.60
90 91 1.152756 GGCAAACCTCCACACACCT 60.153 57.895 0.00 0.00 0.00 4.00
114 115 1.007271 CCGAATCCCACGAGATCCG 60.007 63.158 0.00 2.55 45.44 4.18
122 123 3.912745 AACACCGGCCGAATCCCAC 62.913 63.158 30.73 0.00 0.00 4.61
134 136 1.384525 TCCACCAAAGACAAACACCG 58.615 50.000 0.00 0.00 0.00 4.94
137 139 3.304911 TGGATCCACCAAAGACAAACA 57.695 42.857 11.44 0.00 46.75 2.83
157 159 3.223674 ACAAAAAGACCGGATCCAAGT 57.776 42.857 9.46 8.47 0.00 3.16
173 175 7.328493 CAGTAGACACACGAAGATATGAACAAA 59.672 37.037 0.00 0.00 0.00 2.83
174 176 6.806739 CAGTAGACACACGAAGATATGAACAA 59.193 38.462 0.00 0.00 0.00 2.83
175 177 6.322491 CAGTAGACACACGAAGATATGAACA 58.678 40.000 0.00 0.00 0.00 3.18
176 178 5.744345 CCAGTAGACACACGAAGATATGAAC 59.256 44.000 0.00 0.00 0.00 3.18
177 179 5.417894 ACCAGTAGACACACGAAGATATGAA 59.582 40.000 0.00 0.00 0.00 2.57
186 188 1.694844 TCCAACCAGTAGACACACGA 58.305 50.000 0.00 0.00 0.00 4.35
187 189 2.231478 AGATCCAACCAGTAGACACACG 59.769 50.000 0.00 0.00 0.00 4.49
234 236 2.051345 CTGAACAACAACCGCCGC 60.051 61.111 0.00 0.00 0.00 6.53
244 246 0.108585 GGACCAGTGCTCCTGAACAA 59.891 55.000 5.64 0.00 44.49 2.83
281 283 2.448453 AGTAGAGACTCGGGAAGTTGG 58.552 52.381 0.00 0.00 38.74 3.77
283 285 4.298103 TGTAGTAGAGACTCGGGAAGTT 57.702 45.455 0.00 0.00 38.74 2.66
288 290 3.128938 CCTTGTTGTAGTAGAGACTCGGG 59.871 52.174 0.00 0.00 37.10 5.14
293 295 4.451435 GGCAAACCTTGTTGTAGTAGAGAC 59.549 45.833 0.00 0.00 0.00 3.36
325 327 1.227674 GTCATCGCCCCTCCATCAC 60.228 63.158 0.00 0.00 0.00 3.06
351 353 2.598394 GTTGGAGCAAGCCAGGCA 60.598 61.111 15.80 0.00 39.52 4.75
360 364 1.202440 ACGACTACAAACGTTGGAGCA 60.202 47.619 10.33 0.00 45.87 4.26
367 371 1.126079 CAAGCGACGACTACAAACGT 58.874 50.000 0.00 0.00 45.32 3.99
368 372 0.433492 CCAAGCGACGACTACAAACG 59.567 55.000 0.00 0.00 0.00 3.60
444 449 8.964476 AACTTCCGACATATTCATCAACTATT 57.036 30.769 0.00 0.00 0.00 1.73
459 464 2.045561 TGCTGGAAAAACTTCCGACA 57.954 45.000 0.00 0.00 44.02 4.35
485 490 1.310904 GCCGCATTTACCCCGAATTA 58.689 50.000 0.00 0.00 0.00 1.40
486 491 0.681564 TGCCGCATTTACCCCGAATT 60.682 50.000 0.00 0.00 0.00 2.17
487 492 1.077357 TGCCGCATTTACCCCGAAT 60.077 52.632 0.00 0.00 0.00 3.34
554 559 5.736813 ACAGTACTCTACTCTCTCAATCGT 58.263 41.667 0.00 0.00 36.76 3.73
576 582 5.269313 GGTATATATGCCGTCGCTACTAAC 58.731 45.833 3.90 0.00 35.36 2.34
651 661 3.494626 CGAACAGCAACATGTACTCACTT 59.505 43.478 0.00 0.00 31.70 3.16
652 662 3.059884 CGAACAGCAACATGTACTCACT 58.940 45.455 0.00 0.00 31.70 3.41
654 664 3.106242 ACGAACAGCAACATGTACTCA 57.894 42.857 0.00 0.00 31.70 3.41
655 665 6.074302 CCATATACGAACAGCAACATGTACTC 60.074 42.308 0.00 0.00 31.70 2.59
657 667 5.751509 TCCATATACGAACAGCAACATGTAC 59.248 40.000 0.00 0.00 31.70 2.90
658 668 5.908341 TCCATATACGAACAGCAACATGTA 58.092 37.500 0.00 0.00 31.70 2.29
673 709 6.586463 CGGAGACACATACACATTCCATATAC 59.414 42.308 0.00 0.00 0.00 1.47
698 734 4.152402 ACGACGTGTATACATACCGATACC 59.848 45.833 21.86 9.16 33.88 2.73
737 773 0.831711 ATTGGCTTGGGTGTTGGTCC 60.832 55.000 0.00 0.00 0.00 4.46
754 790 3.196685 AGGCTCTTGCTTTACTCTCGATT 59.803 43.478 0.00 0.00 39.59 3.34
856 895 0.598562 GAGCACTTGGTCGTCTGAGA 59.401 55.000 0.00 0.00 32.58 3.27
971 1046 1.799917 GCTGCAACCGTAGCGTGTATA 60.800 52.381 0.00 0.00 41.19 1.47
972 1047 1.082117 GCTGCAACCGTAGCGTGTAT 61.082 55.000 0.00 0.00 41.19 2.29
973 1048 1.735198 GCTGCAACCGTAGCGTGTA 60.735 57.895 0.00 0.00 41.19 2.90
974 1049 3.041940 GCTGCAACCGTAGCGTGT 61.042 61.111 0.00 0.00 41.19 4.49
1101 1178 4.430765 ACCGCGCTACCAACCTCG 62.431 66.667 5.56 0.00 0.00 4.63
1102 1179 2.508663 GACCGCGCTACCAACCTC 60.509 66.667 5.56 0.00 0.00 3.85
1103 1180 4.430765 CGACCGCGCTACCAACCT 62.431 66.667 5.56 0.00 0.00 3.50
1174 1251 1.531840 TCTCCTATCTCCCGCTGCC 60.532 63.158 0.00 0.00 0.00 4.85
1464 1541 9.104965 CAAGTACGTGGGATGAGAAAAATTATA 57.895 33.333 0.00 0.00 0.00 0.98
1498 1581 5.981088 ATGTACATGCATTTTGACAGGAA 57.019 34.783 7.78 0.00 0.00 3.36
1516 1606 9.284968 ACGTGATCATCGATCCATATATATGTA 57.715 33.333 19.11 6.24 38.20 2.29
1517 1607 8.171164 ACGTGATCATCGATCCATATATATGT 57.829 34.615 19.11 4.05 38.20 2.29
1518 1608 9.766277 CTACGTGATCATCGATCCATATATATG 57.234 37.037 19.74 14.78 38.20 1.78
1519 1609 8.454894 GCTACGTGATCATCGATCCATATATAT 58.545 37.037 19.74 0.00 38.20 0.86
1575 1689 6.837568 ACTAATCCTGTTCGATCTTACCCTAA 59.162 38.462 0.00 0.00 0.00 2.69
1579 1693 5.530712 GGACTAATCCTGTTCGATCTTACC 58.469 45.833 0.00 0.00 42.45 2.85
1580 1694 5.213675 CGGACTAATCCTGTTCGATCTTAC 58.786 45.833 0.00 0.00 43.73 2.34
1581 1695 4.261489 GCGGACTAATCCTGTTCGATCTTA 60.261 45.833 0.00 0.00 43.73 2.10
1582 1696 3.491104 GCGGACTAATCCTGTTCGATCTT 60.491 47.826 0.00 0.00 43.73 2.40
1583 1697 2.034812 GCGGACTAATCCTGTTCGATCT 59.965 50.000 0.00 0.00 43.73 2.75
1585 1699 2.032620 AGCGGACTAATCCTGTTCGAT 58.967 47.619 0.00 0.00 43.73 3.59
1586 1700 1.471119 AGCGGACTAATCCTGTTCGA 58.529 50.000 0.00 0.00 43.73 3.71
1587 1701 2.617308 TCTAGCGGACTAATCCTGTTCG 59.383 50.000 0.00 0.00 43.73 3.95
1599 1713 6.201425 CGATATCCTATCTTACTCTAGCGGAC 59.799 46.154 0.00 0.00 0.00 4.79
1655 1770 5.236478 AGCGCGCTATTTAAAACTATGACAT 59.764 36.000 35.79 0.00 0.00 3.06
1656 1771 4.569162 AGCGCGCTATTTAAAACTATGACA 59.431 37.500 35.79 0.00 0.00 3.58
1657 1772 5.079397 AGCGCGCTATTTAAAACTATGAC 57.921 39.130 35.79 0.00 0.00 3.06
1658 1773 6.563381 GCTTAGCGCGCTATTTAAAACTATGA 60.563 38.462 38.51 19.23 0.00 2.15
1659 1774 5.560378 GCTTAGCGCGCTATTTAAAACTATG 59.440 40.000 38.51 19.33 0.00 2.23
1660 1775 5.235616 TGCTTAGCGCGCTATTTAAAACTAT 59.764 36.000 38.51 13.72 43.27 2.12
1661 1776 4.567558 TGCTTAGCGCGCTATTTAAAACTA 59.432 37.500 38.51 20.65 43.27 2.24
1662 1777 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
1663 1778 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
1664 1779 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
1665 1780 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
1666 1781 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
1667 1782 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
1668 1783 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
1669 1784 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
1670 1785 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
1671 1786 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
1672 1787 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
1673 1788 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
1677 1792 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
1678 1793 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
1679 1794 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
1680 1795 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
1681 1796 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
1682 1797 2.925162 AAGGTCCGCCGCTAAGATGC 62.925 60.000 0.00 0.00 40.50 3.91
1683 1798 0.462047 AAAGGTCCGCCGCTAAGATG 60.462 55.000 0.00 0.00 40.50 2.90
1684 1799 0.252197 AAAAGGTCCGCCGCTAAGAT 59.748 50.000 0.00 0.00 40.50 2.40
1685 1800 0.390735 GAAAAGGTCCGCCGCTAAGA 60.391 55.000 0.00 0.00 40.50 2.10
1686 1801 1.366854 GGAAAAGGTCCGCCGCTAAG 61.367 60.000 0.00 0.00 40.50 2.18
1687 1802 1.376295 GGAAAAGGTCCGCCGCTAA 60.376 57.895 0.00 0.00 40.50 3.09
1688 1803 2.266689 GGAAAAGGTCCGCCGCTA 59.733 61.111 0.00 0.00 40.50 4.26
1693 1808 7.717351 GCTATAGCATTTGGAAAAGGTCCGC 62.717 48.000 20.01 0.00 44.91 5.54
1694 1809 4.261197 GCTATAGCATTTGGAAAAGGTCCG 60.261 45.833 20.01 0.00 44.91 4.79
1695 1810 4.261197 CGCTATAGCATTTGGAAAAGGTCC 60.261 45.833 23.99 0.00 43.81 4.46
1696 1811 4.335594 ACGCTATAGCATTTGGAAAAGGTC 59.664 41.667 23.99 0.00 42.21 3.85
1697 1812 4.096382 CACGCTATAGCATTTGGAAAAGGT 59.904 41.667 23.99 6.60 42.21 3.50
1698 1813 4.601019 CACGCTATAGCATTTGGAAAAGG 58.399 43.478 23.99 5.98 42.21 3.11
1699 1814 4.037690 GCACGCTATAGCATTTGGAAAAG 58.962 43.478 23.99 6.48 42.21 2.27
1700 1815 3.694072 AGCACGCTATAGCATTTGGAAAA 59.306 39.130 23.99 0.00 42.21 2.29
1701 1816 3.278574 AGCACGCTATAGCATTTGGAAA 58.721 40.909 23.99 0.00 42.21 3.13
1702 1817 2.917933 AGCACGCTATAGCATTTGGAA 58.082 42.857 23.99 0.00 42.21 3.53
1703 1818 2.620251 AGCACGCTATAGCATTTGGA 57.380 45.000 23.99 0.00 42.21 3.53
1704 1819 5.709011 CTATAGCACGCTATAGCATTTGG 57.291 43.478 25.42 9.98 46.26 3.28
1712 1827 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1713 1828 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1714 1829 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1715 1830 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1716 1831 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1724 1839 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
1727 1842 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
1728 1843 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
1729 1844 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
1730 1845 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
1731 1846 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
1732 1847 7.408290 GCAAACATTTTAAATAGCGCGCTATAG 60.408 37.037 43.81 29.40 38.20 1.31
1733 1848 6.358558 GCAAACATTTTAAATAGCGCGCTATA 59.641 34.615 43.81 31.73 38.20 1.31
1734 1849 5.173131 GCAAACATTTTAAATAGCGCGCTAT 59.827 36.000 40.32 40.32 40.63 2.97
1735 1850 4.497608 GCAAACATTTTAAATAGCGCGCTA 59.502 37.500 39.72 39.72 0.00 4.26
1736 1851 3.303229 GCAAACATTTTAAATAGCGCGCT 59.697 39.130 38.01 38.01 0.00 5.92
1737 1852 3.303229 AGCAAACATTTTAAATAGCGCGC 59.697 39.130 26.66 26.66 0.00 6.86
1738 1853 4.556912 TGAGCAAACATTTTAAATAGCGCG 59.443 37.500 0.00 0.00 0.00 6.86
1739 1854 6.573617 ATGAGCAAACATTTTAAATAGCGC 57.426 33.333 0.00 0.00 0.00 5.92
1740 1855 8.434661 ACAAATGAGCAAACATTTTAAATAGCG 58.565 29.630 11.74 4.23 44.63 4.26
1744 1859 9.733219 CCAAACAAATGAGCAAACATTTTAAAT 57.267 25.926 11.74 0.00 44.63 1.40
1745 1860 8.950210 TCCAAACAAATGAGCAAACATTTTAAA 58.050 25.926 11.74 0.00 44.63 1.52
1746 1861 8.394121 GTCCAAACAAATGAGCAAACATTTTAA 58.606 29.630 11.74 0.00 44.63 1.52
1747 1862 7.011857 GGTCCAAACAAATGAGCAAACATTTTA 59.988 33.333 11.74 0.00 44.63 1.52
1748 1863 6.183360 GGTCCAAACAAATGAGCAAACATTTT 60.183 34.615 11.74 4.50 44.63 1.82
1749 1864 5.296531 GGTCCAAACAAATGAGCAAACATTT 59.703 36.000 9.56 9.56 46.85 2.32
1750 1865 4.815846 GGTCCAAACAAATGAGCAAACATT 59.184 37.500 0.00 0.00 41.43 2.71
1751 1866 4.141756 TGGTCCAAACAAATGAGCAAACAT 60.142 37.500 0.00 0.00 33.95 2.71
1752 1867 3.196469 TGGTCCAAACAAATGAGCAAACA 59.804 39.130 0.00 0.00 33.95 2.83
1753 1868 3.791245 TGGTCCAAACAAATGAGCAAAC 58.209 40.909 0.00 0.00 33.95 2.93
1754 1869 4.478206 TTGGTCCAAACAAATGAGCAAA 57.522 36.364 0.40 0.00 41.80 3.68
1755 1870 4.081198 ACTTTGGTCCAAACAAATGAGCAA 60.081 37.500 13.26 0.00 42.70 3.91
1756 1871 3.450457 ACTTTGGTCCAAACAAATGAGCA 59.550 39.130 13.26 0.00 37.22 4.26
1757 1872 4.051237 GACTTTGGTCCAAACAAATGAGC 58.949 43.478 13.26 0.00 37.22 4.26
1758 1873 5.300286 AGAGACTTTGGTCCAAACAAATGAG 59.700 40.000 13.26 4.40 43.05 2.90
1759 1874 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
1760 1875 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
1761 1876 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
1762 1877 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
1763 1878 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
1764 1879 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
1765 1880 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
1766 1881 3.181458 ACGCTAAGAGACTTTGGTCCAAA 60.181 43.478 16.26 16.26 43.05 3.28
1767 1882 2.367567 ACGCTAAGAGACTTTGGTCCAA 59.632 45.455 0.00 0.00 43.05 3.53
1768 1883 1.968493 ACGCTAAGAGACTTTGGTCCA 59.032 47.619 0.00 0.00 43.05 4.02
1769 1884 2.745515 ACGCTAAGAGACTTTGGTCC 57.254 50.000 0.00 0.00 43.05 4.46
1770 1885 4.858140 GTCTTACGCTAAGAGACTTTGGTC 59.142 45.833 7.45 0.00 44.79 4.02
1771 1886 4.321824 GGTCTTACGCTAAGAGACTTTGGT 60.322 45.833 7.45 0.00 44.79 3.67
1772 1887 4.082136 AGGTCTTACGCTAAGAGACTTTGG 60.082 45.833 7.45 0.00 44.79 3.28
1773 1888 5.061920 AGGTCTTACGCTAAGAGACTTTG 57.938 43.478 7.45 0.00 44.79 2.77
1774 1889 5.725325 AAGGTCTTACGCTAAGAGACTTT 57.275 39.130 7.45 0.00 44.79 2.66
1775 1890 5.725325 AAAGGTCTTACGCTAAGAGACTT 57.275 39.130 7.45 10.76 44.79 3.01
1776 1891 5.010820 ACAAAAGGTCTTACGCTAAGAGACT 59.989 40.000 7.45 6.80 44.79 3.24
1777 1892 5.228665 ACAAAAGGTCTTACGCTAAGAGAC 58.771 41.667 7.45 0.00 44.79 3.36
1778 1893 5.464030 ACAAAAGGTCTTACGCTAAGAGA 57.536 39.130 7.45 0.00 44.79 3.10
1779 1894 7.508134 GTTTACAAAAGGTCTTACGCTAAGAG 58.492 38.462 7.45 0.46 44.79 2.85
1780 1895 6.144402 CGTTTACAAAAGGTCTTACGCTAAGA 59.856 38.462 4.12 4.12 42.19 2.10
1781 1896 6.294363 CGTTTACAAAAGGTCTTACGCTAAG 58.706 40.000 0.00 0.00 37.13 2.18
1782 1897 5.333263 GCGTTTACAAAAGGTCTTACGCTAA 60.333 40.000 15.01 0.00 43.87 3.09
1783 1898 4.150451 GCGTTTACAAAAGGTCTTACGCTA 59.850 41.667 15.01 0.00 43.87 4.26
1784 1899 3.059393 GCGTTTACAAAAGGTCTTACGCT 60.059 43.478 15.01 0.00 43.87 5.07
1785 1900 3.059393 AGCGTTTACAAAAGGTCTTACGC 60.059 43.478 14.67 14.67 45.74 4.42
1786 1901 4.720530 AGCGTTTACAAAAGGTCTTACG 57.279 40.909 0.00 0.00 33.49 3.18
1787 1902 7.397194 GCTATAGCGTTTACAAAAGGTCTTAC 58.603 38.462 9.40 0.00 31.10 2.34
1788 1903 7.529880 GCTATAGCGTTTACAAAAGGTCTTA 57.470 36.000 9.40 0.00 31.10 2.10
1789 1904 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
1807 1922 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1808 1923 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1809 1924 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1810 1925 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1811 1926 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1819 1934 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1820 1935 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1821 1936 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1822 1937 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1823 1938 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
1824 1939 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
1825 1940 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
1826 1941 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
1827 1942 6.073222 CCACTGTTTTAAATAGCCCGCTATAG 60.073 42.308 9.56 4.62 38.20 1.31
1828 1943 5.761234 CCACTGTTTTAAATAGCCCGCTATA 59.239 40.000 9.56 0.00 38.20 1.31
1829 1944 4.578928 CCACTGTTTTAAATAGCCCGCTAT 59.421 41.667 3.31 3.31 40.63 2.97
1830 1945 3.942748 CCACTGTTTTAAATAGCCCGCTA 59.057 43.478 0.00 0.00 0.00 4.26
1831 1946 2.752903 CCACTGTTTTAAATAGCCCGCT 59.247 45.455 1.36 0.00 0.00 5.52
1832 1947 2.490509 ACCACTGTTTTAAATAGCCCGC 59.509 45.455 1.36 0.00 0.00 6.13
1833 1948 4.776795 AACCACTGTTTTAAATAGCCCG 57.223 40.909 1.36 0.00 0.00 6.13
1834 1949 7.544217 CACATTAACCACTGTTTTAAATAGCCC 59.456 37.037 1.36 0.00 35.87 5.19
1835 1950 7.062956 GCACATTAACCACTGTTTTAAATAGCC 59.937 37.037 1.36 0.00 35.87 3.93
1836 1951 7.596995 TGCACATTAACCACTGTTTTAAATAGC 59.403 33.333 1.36 0.00 35.87 2.97
1837 1952 8.911662 GTGCACATTAACCACTGTTTTAAATAG 58.088 33.333 13.17 0.00 35.87 1.73
1838 1953 7.591795 CGTGCACATTAACCACTGTTTTAAATA 59.408 33.333 18.64 0.00 35.87 1.40
1839 1954 6.419413 CGTGCACATTAACCACTGTTTTAAAT 59.581 34.615 18.64 0.00 35.87 1.40
1840 1955 5.744345 CGTGCACATTAACCACTGTTTTAAA 59.256 36.000 18.64 0.00 35.87 1.52
1841 1956 5.066117 TCGTGCACATTAACCACTGTTTTAA 59.934 36.000 18.64 0.00 35.87 1.52
1842 1957 4.575236 TCGTGCACATTAACCACTGTTTTA 59.425 37.500 18.64 0.00 35.87 1.52
1843 1958 3.378742 TCGTGCACATTAACCACTGTTTT 59.621 39.130 18.64 0.00 35.87 2.43
1844 1959 2.946329 TCGTGCACATTAACCACTGTTT 59.054 40.909 18.64 0.00 35.87 2.83
1845 1960 2.566913 TCGTGCACATTAACCACTGTT 58.433 42.857 18.64 0.00 38.52 3.16
1846 1961 2.248280 TCGTGCACATTAACCACTGT 57.752 45.000 18.64 0.00 0.00 3.55
1847 1962 3.617540 TTTCGTGCACATTAACCACTG 57.382 42.857 18.64 0.00 0.00 3.66
1848 1963 3.004315 CCTTTTCGTGCACATTAACCACT 59.996 43.478 18.64 0.00 0.00 4.00
1849 1964 3.003897 TCCTTTTCGTGCACATTAACCAC 59.996 43.478 18.64 0.00 0.00 4.16
1850 1965 3.003897 GTCCTTTTCGTGCACATTAACCA 59.996 43.478 18.64 0.00 0.00 3.67
1851 1966 3.561503 GTCCTTTTCGTGCACATTAACC 58.438 45.455 18.64 0.00 0.00 2.85
1852 1967 3.252458 AGGTCCTTTTCGTGCACATTAAC 59.748 43.478 18.64 5.02 0.00 2.01
1853 1968 3.252215 CAGGTCCTTTTCGTGCACATTAA 59.748 43.478 18.64 4.87 0.00 1.40
1854 1969 2.811431 CAGGTCCTTTTCGTGCACATTA 59.189 45.455 18.64 0.00 0.00 1.90
1855 1970 1.608590 CAGGTCCTTTTCGTGCACATT 59.391 47.619 18.64 0.00 0.00 2.71
1969 2084 0.592500 TCAACAGCGAGCGATCGATC 60.593 55.000 29.29 22.90 34.64 3.69
1970 2085 0.593518 CTCAACAGCGAGCGATCGAT 60.594 55.000 29.29 20.02 34.64 3.59
1971 2086 1.226407 CTCAACAGCGAGCGATCGA 60.226 57.895 29.29 3.07 34.64 3.59
1972 2087 1.467556 GACTCAACAGCGAGCGATCG 61.468 60.000 20.40 20.40 36.42 3.69
1973 2088 1.142778 GGACTCAACAGCGAGCGATC 61.143 60.000 0.00 0.00 36.42 3.69
1974 2089 1.153745 GGACTCAACAGCGAGCGAT 60.154 57.895 0.00 0.00 36.42 4.58
1978 2093 1.581934 TGTTTGGACTCAACAGCGAG 58.418 50.000 0.00 0.00 39.05 5.03
2004 2119 0.940126 GTGTGTGTGCTCTTGACAGG 59.060 55.000 0.00 0.00 0.00 4.00
2028 2143 8.134895 TCACTTCGTTTTCAAGCAATTTAAGAT 58.865 29.630 0.00 0.00 0.00 2.40
2089 2284 3.358118 TCCTGTCAAAAACCCGAAAAGT 58.642 40.909 0.00 0.00 0.00 2.66
2128 2327 4.693538 TGCATCGATCTCTATCTAGCAC 57.306 45.455 0.00 0.00 30.74 4.40
2169 2370 1.955080 CCCTGCTTCCTAGTACTACCG 59.045 57.143 0.00 0.00 0.00 4.02
2172 2373 9.310449 CTAATAATTCCCTGCTTCCTAGTACTA 57.690 37.037 1.89 1.89 0.00 1.82
2223 2429 4.104831 AGGGGACTACTGCTTAAATCAGT 58.895 43.478 12.79 12.79 45.71 3.41
2224 2430 4.407296 AGAGGGGACTACTGCTTAAATCAG 59.593 45.833 3.58 3.58 44.43 2.90
2248 2454 6.579666 AATAACATGTTCATCACAAGCAGT 57.420 33.333 15.85 0.00 39.50 4.40
2288 2494 2.749621 CCTTCTTTTCAACCCGGATCTG 59.250 50.000 0.73 0.00 0.00 2.90
2292 2498 2.707257 ACTACCTTCTTTTCAACCCGGA 59.293 45.455 0.73 0.00 0.00 5.14
2293 2499 3.136009 ACTACCTTCTTTTCAACCCGG 57.864 47.619 0.00 0.00 0.00 5.73
2358 2613 3.926527 TCGATGACATATTTCGCTATGGC 59.073 43.478 0.00 0.00 37.59 4.40
2363 2618 7.867909 TCTTATTCTTCGATGACATATTTCGCT 59.132 33.333 0.00 0.00 33.08 4.93
2389 2644 4.218417 GCAATAGGTCACCAAATTGTCACT 59.782 41.667 18.41 0.00 34.09 3.41
2396 2651 3.016736 CGAAGGCAATAGGTCACCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
2397 2652 2.224670 ACGAAGGCAATAGGTCACCAAA 60.225 45.455 0.00 0.00 0.00 3.28
2398 2653 1.349688 ACGAAGGCAATAGGTCACCAA 59.650 47.619 0.00 0.00 0.00 3.67
2482 2737 0.669318 TGCGACAAGTGATTCGGGAC 60.669 55.000 0.00 0.00 35.73 4.46
2483 2738 0.389817 CTGCGACAAGTGATTCGGGA 60.390 55.000 0.00 0.00 35.73 5.14
2484 2739 1.361668 CCTGCGACAAGTGATTCGGG 61.362 60.000 0.00 0.00 35.73 5.14
2485 2740 0.670546 ACCTGCGACAAGTGATTCGG 60.671 55.000 0.00 0.00 35.73 4.30
2486 2741 1.990799 TACCTGCGACAAGTGATTCG 58.009 50.000 0.00 0.00 38.31 3.34
2487 2742 2.609459 CCATACCTGCGACAAGTGATTC 59.391 50.000 0.00 0.00 0.00 2.52
2488 2743 2.236146 TCCATACCTGCGACAAGTGATT 59.764 45.455 0.00 0.00 0.00 2.57
2489 2744 1.831106 TCCATACCTGCGACAAGTGAT 59.169 47.619 0.00 0.00 0.00 3.06
2490 2745 1.262417 TCCATACCTGCGACAAGTGA 58.738 50.000 0.00 0.00 0.00 3.41
2491 2746 1.935873 CATCCATACCTGCGACAAGTG 59.064 52.381 0.00 0.00 0.00 3.16
2492 2747 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2493 2748 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2494 2749 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2495 2750 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2496 2751 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2497 2752 6.014584 ACATTTAGATACATCCATACCTGCGA 60.015 38.462 0.00 0.00 0.00 5.10
2498 2753 6.166279 ACATTTAGATACATCCATACCTGCG 58.834 40.000 0.00 0.00 0.00 5.18
2499 2754 9.672673 AATACATTTAGATACATCCATACCTGC 57.327 33.333 0.00 0.00 0.00 4.85
2525 2780 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2526 2781 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2527 2782 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2528 2783 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2529 2784 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2530 2785 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2531 2786 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2532 2787 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2533 2788 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2534 2789 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2535 2790 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2536 2791 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2537 2792 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2538 2793 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2539 2794 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2540 2795 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2541 2796 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2542 2797 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2543 2798 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2544 2799 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2545 2800 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2546 2801 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2547 2802 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2548 2803 2.734606 TGTTCCAAATTACTCGTCGCAG 59.265 45.455 0.00 0.00 0.00 5.18
2549 2804 2.734606 CTGTTCCAAATTACTCGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2550 2805 2.991190 TCTGTTCCAAATTACTCGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2551 2806 3.612860 CCTCTGTTCCAAATTACTCGTCG 59.387 47.826 0.00 0.00 0.00 5.12
2552 2807 3.933332 CCCTCTGTTCCAAATTACTCGTC 59.067 47.826 0.00 0.00 0.00 4.20
2553 2808 3.581332 TCCCTCTGTTCCAAATTACTCGT 59.419 43.478 0.00 0.00 0.00 4.18
2554 2809 4.081642 TCTCCCTCTGTTCCAAATTACTCG 60.082 45.833 0.00 0.00 0.00 4.18
2555 2810 5.422214 TCTCCCTCTGTTCCAAATTACTC 57.578 43.478 0.00 0.00 0.00 2.59
2556 2811 5.548056 TCTTCTCCCTCTGTTCCAAATTACT 59.452 40.000 0.00 0.00 0.00 2.24
2557 2812 5.805728 TCTTCTCCCTCTGTTCCAAATTAC 58.194 41.667 0.00 0.00 0.00 1.89
2558 2813 6.642733 ATCTTCTCCCTCTGTTCCAAATTA 57.357 37.500 0.00 0.00 0.00 1.40
2559 2814 5.527026 ATCTTCTCCCTCTGTTCCAAATT 57.473 39.130 0.00 0.00 0.00 1.82
2560 2815 6.388100 TCATATCTTCTCCCTCTGTTCCAAAT 59.612 38.462 0.00 0.00 0.00 2.32
2561 2816 5.726308 TCATATCTTCTCCCTCTGTTCCAAA 59.274 40.000 0.00 0.00 0.00 3.28
2562 2817 5.129485 GTCATATCTTCTCCCTCTGTTCCAA 59.871 44.000 0.00 0.00 0.00 3.53
2563 2818 4.651503 GTCATATCTTCTCCCTCTGTTCCA 59.348 45.833 0.00 0.00 0.00 3.53
2564 2819 4.651503 TGTCATATCTTCTCCCTCTGTTCC 59.348 45.833 0.00 0.00 0.00 3.62
2565 2820 5.860941 TGTCATATCTTCTCCCTCTGTTC 57.139 43.478 0.00 0.00 0.00 3.18
2566 2821 6.627087 TTTGTCATATCTTCTCCCTCTGTT 57.373 37.500 0.00 0.00 0.00 3.16
2567 2822 6.627087 TTTTGTCATATCTTCTCCCTCTGT 57.373 37.500 0.00 0.00 0.00 3.41
2594 2849 2.799126 TCATTTGTTCCGCCCATACT 57.201 45.000 0.00 0.00 0.00 2.12
2595 2850 4.111916 CAATTCATTTGTTCCGCCCATAC 58.888 43.478 0.00 0.00 0.00 2.39
2632 2888 6.944290 ACAAACATGGCATGAGCTATATATGT 59.056 34.615 32.74 17.98 40.28 2.29
2750 3009 9.161629 CTGCATATACCGATATTCCATGTTTAA 57.838 33.333 0.00 0.00 0.00 1.52
2766 3025 1.296715 CCCGGCCTCTGCATATACC 59.703 63.158 0.00 0.00 40.13 2.73
2885 3145 6.660949 AGAAAAAGTAGTGGCTATTGCTGAAT 59.339 34.615 0.00 0.00 39.59 2.57
2887 3147 5.560724 AGAAAAAGTAGTGGCTATTGCTGA 58.439 37.500 0.00 0.00 39.59 4.26
3009 3270 4.173036 TCCATTTTTGAATCCAACGCTC 57.827 40.909 0.00 0.00 30.88 5.03
3122 3383 3.679083 GCCGAGTAGCCTTTTATCAGTGT 60.679 47.826 0.00 0.00 0.00 3.55
3156 3417 5.183904 CACTATCCACTCCATCGACATCATA 59.816 44.000 0.00 0.00 0.00 2.15
3210 3471 3.387699 ACACTTTCATGGAAAACTTGGGG 59.612 43.478 0.00 0.00 30.84 4.96
3273 3534 8.551205 CGTTGATTACATTCTTACTATGCATGT 58.449 33.333 10.16 8.18 32.80 3.21
3357 3618 6.887368 TCATGCAAACGTGATGCTTATATAC 58.113 36.000 22.42 0.00 44.14 1.47
3371 3632 3.364621 GCCAATACAACTTCATGCAAACG 59.635 43.478 0.00 0.00 0.00 3.60
3382 3643 6.070824 CCTTTTAATTCAGGGCCAATACAACT 60.071 38.462 6.18 0.00 0.00 3.16
3384 3645 5.782845 ACCTTTTAATTCAGGGCCAATACAA 59.217 36.000 6.18 0.00 34.02 2.41
3386 3647 5.932619 ACCTTTTAATTCAGGGCCAATAC 57.067 39.130 6.18 0.00 34.02 1.89
3389 3650 5.005628 AGTACCTTTTAATTCAGGGCCAA 57.994 39.130 6.18 0.00 34.02 4.52
3391 3652 4.595986 TGAGTACCTTTTAATTCAGGGCC 58.404 43.478 0.00 0.00 34.02 5.80
3432 3693 7.923414 ACTTGGTCCATATCTTCTAAAACAC 57.077 36.000 0.00 0.00 0.00 3.32
3459 3880 4.944962 TTTGCGAGGTCATTTCAGTATG 57.055 40.909 0.00 0.00 37.54 2.39
3460 3881 5.957842 TTTTTGCGAGGTCATTTCAGTAT 57.042 34.783 0.00 0.00 0.00 2.12
3518 3939 8.626526 TGCGGGTAGATTATTAAAGAAAATTCC 58.373 33.333 0.00 0.00 0.00 3.01
3561 4016 5.934625 TCAAGCTCTCATAACTTTTGGAGAC 59.065 40.000 0.00 0.00 33.20 3.36
3564 4019 6.716628 ACATTCAAGCTCTCATAACTTTTGGA 59.283 34.615 0.00 0.00 0.00 3.53
3565 4020 6.805271 CACATTCAAGCTCTCATAACTTTTGG 59.195 38.462 0.00 0.00 0.00 3.28
3680 4141 4.828072 ATCTGTCCTTCCTGGTAACTTC 57.172 45.455 0.00 0.00 37.07 3.01
3800 4261 2.092914 GGATAGGCTAGCTTGTTGTGGT 60.093 50.000 15.72 0.00 0.00 4.16
3827 4288 0.904649 TGGTCGAGGATTGTGCAGAT 59.095 50.000 0.00 0.00 0.00 2.90
3854 4315 2.299582 CCCATTGTTGGACTTGCATTCA 59.700 45.455 0.00 0.00 46.92 2.57
3910 4371 1.080093 GATGACGCGTCCTTGTCCA 60.080 57.895 34.34 16.62 34.18 4.02
3986 4447 1.241315 GCATGCCGTTGGTACCACTT 61.241 55.000 16.04 0.00 0.00 3.16
3987 4448 1.674322 GCATGCCGTTGGTACCACT 60.674 57.895 16.04 0.00 0.00 4.00
4004 4465 3.118629 TCACTAGTGGATCTTGGTCATGC 60.119 47.826 22.48 0.00 0.00 4.06
4095 4556 4.145876 TGTCAACATCATTTTCGACTGC 57.854 40.909 0.00 0.00 0.00 4.40
4145 4606 1.153369 CGTCGCTCCAATGTCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
4217 4678 0.977627 TGTCGACCATGGAGGCATCT 60.978 55.000 21.47 0.00 43.14 2.90
4253 4714 9.370930 AGCTAGATGTAACTAGACTACTAGAGA 57.629 37.037 10.60 0.00 46.34 3.10
4268 4729 5.762711 TCAGTTGTTTGCAAGCTAGATGTAA 59.237 36.000 14.67 0.00 34.94 2.41
4301 4762 0.386352 CGACATGCAACACAAGCTGG 60.386 55.000 0.00 0.00 0.00 4.85
4640 5174 8.158169 TCTCATGCATATCTGAATTTGTAACC 57.842 34.615 0.00 0.00 0.00 2.85
4741 5278 7.234187 TCGTTATGATAGAAATGCACTTGTC 57.766 36.000 0.00 0.00 0.00 3.18
4837 5379 7.706179 GCAATAACTTAACAATGCATACACCAT 59.294 33.333 0.00 0.00 34.10 3.55
4838 5380 7.032580 GCAATAACTTAACAATGCATACACCA 58.967 34.615 0.00 0.00 34.10 4.17
4869 5411 9.109533 GCAAACAATTTAAAATTCATGCTCTTG 57.890 29.630 9.87 1.92 0.00 3.02
4879 5421 9.828852 CACATGCATAGCAAACAATTTAAAATT 57.171 25.926 0.00 0.00 43.62 1.82
4885 5427 5.759273 ACAACACATGCATAGCAAACAATTT 59.241 32.000 0.00 0.00 43.62 1.82
5133 5675 7.873739 AAACACTTCATTAAATAGCAAGTGC 57.126 32.000 9.48 0.00 45.20 4.40
5160 5703 6.723298 TGCCTCAACTTCCAAATAGAAAAA 57.277 33.333 0.00 0.00 0.00 1.94
5161 5704 6.723298 TTGCCTCAACTTCCAAATAGAAAA 57.277 33.333 0.00 0.00 0.00 2.29
5162 5705 6.916360 ATTGCCTCAACTTCCAAATAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
5163 5706 6.493115 TGAATTGCCTCAACTTCCAAATAGAA 59.507 34.615 0.00 0.00 0.00 2.10
5172 5715 5.166398 CCTTCAATGAATTGCCTCAACTTC 58.834 41.667 0.00 0.00 37.68 3.01
5208 5751 5.472137 TCTTTCCTCCATTTCTTTTACACCG 59.528 40.000 0.00 0.00 0.00 4.94
5308 5854 2.871453 ACGACCCTGGTAAGCAAAAAT 58.129 42.857 0.00 0.00 0.00 1.82
5314 5860 1.551883 TCCTTTACGACCCTGGTAAGC 59.448 52.381 0.00 0.00 32.01 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.