Multiple sequence alignment - TraesCS5D01G326500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G326500 chr5D 100.000 7660 0 0 1 7660 418868094 418875753 0.000000e+00 14146.0
1 TraesCS5D01G326500 chr5B 95.412 5209 163 34 725 5894 506268608 506273779 0.000000e+00 8226.0
2 TraesCS5D01G326500 chr5B 92.088 1719 89 19 5966 7660 506273778 506275473 0.000000e+00 2377.0
3 TraesCS5D01G326500 chr5B 97.468 79 1 1 5890 5968 605314122 605314199 4.820000e-27 134.0
4 TraesCS5D01G326500 chr5B 90.909 55 5 0 1 55 116364478 116364532 2.960000e-09 75.0
5 TraesCS5D01G326500 chr5A 94.483 5166 189 37 774 5878 533482657 533487787 0.000000e+00 7873.0
6 TraesCS5D01G326500 chr5A 94.553 1175 58 3 5966 7137 533487798 533488969 0.000000e+00 1810.0
7 TraesCS5D01G326500 chr5A 92.060 529 16 4 7133 7660 533489047 533489550 0.000000e+00 721.0
8 TraesCS5D01G326500 chr5A 88.177 203 16 5 54 253 28436592 28436395 1.290000e-57 235.0
9 TraesCS5D01G326500 chr5A 94.643 56 3 0 1 56 368600554 368600499 3.810000e-13 87.9
10 TraesCS5D01G326500 chr7D 82.136 515 70 15 2509 3021 31384858 31384364 9.190000e-114 422.0
11 TraesCS5D01G326500 chr7D 84.892 139 11 4 532 670 263034571 263034443 1.730000e-26 132.0
12 TraesCS5D01G326500 chr4D 81.481 459 62 12 58 510 105985332 105985773 9.450000e-94 355.0
13 TraesCS5D01G326500 chr4D 88.995 209 18 5 58 261 300321797 300321589 3.550000e-63 254.0
14 TraesCS5D01G326500 chr6D 88.302 265 25 2 257 515 335879756 335880020 5.770000e-81 313.0
15 TraesCS5D01G326500 chr6D 86.667 270 31 2 253 518 327405689 327405421 2.090000e-75 294.0
16 TraesCS5D01G326500 chr4A 87.454 271 26 4 257 522 104723880 104723613 9.660000e-79 305.0
17 TraesCS5D01G326500 chr4A 86.517 267 31 2 253 515 36258556 36258821 9.730000e-74 289.0
18 TraesCS5D01G326500 chr4A 86.364 264 29 4 257 515 74145704 74145965 1.630000e-71 281.0
19 TraesCS5D01G326500 chr4A 92.308 91 3 1 5889 5975 192619000 192618910 8.070000e-25 126.0
20 TraesCS5D01G326500 chr2B 87.452 263 25 2 257 515 505977945 505978203 5.810000e-76 296.0
21 TraesCS5D01G326500 chr2B 87.805 205 19 4 53 255 505977696 505977896 1.290000e-57 235.0
22 TraesCS5D01G326500 chr2B 94.505 91 2 3 5892 5980 754965173 754965262 3.730000e-28 137.0
23 TraesCS5D01G326500 chr3B 85.338 266 35 1 257 518 583323296 583323031 9.790000e-69 272.0
24 TraesCS5D01G326500 chr3B 89.474 57 4 1 1 55 525383330 525383274 3.830000e-08 71.3
25 TraesCS5D01G326500 chr2D 85.606 264 31 4 257 515 540150099 540150360 3.520000e-68 270.0
26 TraesCS5D01G326500 chr2D 85.057 261 30 5 1 253 127286143 127285884 2.740000e-64 257.0
27 TraesCS5D01G326500 chr2D 88.614 202 21 1 54 253 625811172 625811373 2.140000e-60 244.0
28 TraesCS5D01G326500 chr2D 87.685 203 20 5 54 253 220282570 220282370 1.660000e-56 231.0
29 TraesCS5D01G326500 chr2D 87.624 202 22 2 54 253 414272722 414272922 1.660000e-56 231.0
30 TraesCS5D01G326500 chr6B 88.718 195 16 6 63 253 552742377 552742569 4.620000e-57 233.0
31 TraesCS5D01G326500 chr6B 95.122 82 2 1 5893 5972 715965569 715965650 2.240000e-25 128.0
32 TraesCS5D01G326500 chr3D 87.192 203 23 3 54 253 122017028 122017230 2.150000e-55 228.0
33 TraesCS5D01G326500 chr3D 89.362 47 4 1 1 46 251412630 251412676 2.990000e-04 58.4
34 TraesCS5D01G326500 chr4B 97.500 80 2 0 5889 5968 612401507 612401586 3.730000e-28 137.0
35 TraesCS5D01G326500 chr7B 98.667 75 1 0 5893 5967 692879367 692879293 4.820000e-27 134.0
36 TraesCS5D01G326500 chr7B 94.118 85 3 2 5883 5967 589938031 589938113 2.240000e-25 128.0
37 TraesCS5D01G326500 chr7B 85.950 121 10 2 550 670 240639686 240639799 1.040000e-23 122.0
38 TraesCS5D01G326500 chr1B 97.436 78 2 0 5893 5970 26843410 26843333 4.820000e-27 134.0
39 TraesCS5D01G326500 chr1B 93.182 88 2 4 5886 5970 126260628 126260542 8.070000e-25 126.0
40 TraesCS5D01G326500 chr7A 84.615 117 9 4 556 670 285693203 285693094 2.920000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G326500 chr5D 418868094 418875753 7659 False 14146.0 14146 100.000000 1 7660 1 chr5D.!!$F1 7659
1 TraesCS5D01G326500 chr5B 506268608 506275473 6865 False 5301.5 8226 93.750000 725 7660 2 chr5B.!!$F3 6935
2 TraesCS5D01G326500 chr5A 533482657 533489550 6893 False 3468.0 7873 93.698667 774 7660 3 chr5A.!!$F1 6886
3 TraesCS5D01G326500 chr2B 505977696 505978203 507 False 265.5 296 87.628500 53 515 2 chr2B.!!$F2 462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 624 0.032678 CGAGGGAGGAATGGATGACG 59.967 60.000 0.00 0.00 0.00 4.35 F
641 695 0.036765 TGACAGTTACCACGCCCATC 60.037 55.000 0.00 0.00 0.00 3.51 F
642 696 0.249398 GACAGTTACCACGCCCATCT 59.751 55.000 0.00 0.00 0.00 2.90 F
676 730 0.321564 TTCCAGAAGACGTGCCATGG 60.322 55.000 7.63 7.63 0.00 3.66 F
701 755 0.596082 CTTGGTGGTGGTTTTAGCCG 59.404 55.000 0.00 0.00 0.00 5.52 F
744 798 0.744414 AATCAGCCGTTGATGTCCCG 60.744 55.000 0.00 0.00 45.82 5.14 F
780 834 1.004277 CGTCTCTCCTGCGTTGTGTC 61.004 60.000 0.00 0.00 0.00 3.67 F
1742 1800 1.631388 TCAGGCCAATAAGGTCCGAAA 59.369 47.619 5.01 0.00 45.84 3.46 F
2857 2924 2.103094 CCTTAAGTGATGGCGATGGAGA 59.897 50.000 0.97 0.00 0.00 3.71 F
3447 3539 0.179100 CCCCTACAGTGACATCAGCG 60.179 60.000 0.00 0.00 0.00 5.18 F
4056 4148 2.027192 TCCACCTTCTAGTGACATTGGC 60.027 50.000 0.00 0.00 40.34 4.52 F
5907 6030 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1800 0.773644 ACAGCACCCAGGTCTCATTT 59.226 50.000 0.00 0.0 0.00 2.32 R
2126 2192 2.401583 TGCATAGCGACCTCATTTGT 57.598 45.000 0.00 0.0 0.00 2.83 R
2487 2554 2.880268 TGATGTTGACAGTTGCCTCAAG 59.120 45.455 0.00 0.0 0.00 3.02 R
2653 2720 7.394016 TGTTGTAATATCTGAATGGACACACT 58.606 34.615 0.00 0.0 0.00 3.55 R
2795 2862 0.677731 TCTGAATGAGGGCGGCTTTG 60.678 55.000 9.56 0.0 0.00 2.77 R
2892 2959 1.566231 ACCTGCTATTTTCCTCCCTGG 59.434 52.381 0.00 0.0 37.10 4.45 R
2960 3027 5.996513 AGCATCTAAAGCATCCAGAGTAATG 59.003 40.000 0.00 0.0 0.00 1.90 R
3135 3227 1.204467 CGTTTCATTGGGAATGGGTGG 59.796 52.381 0.00 0.0 39.38 4.61 R
3847 3939 2.230660 GTAATACTCCCATGCTTGGCC 58.769 52.381 13.15 0.0 42.15 5.36 R
4414 4518 3.012518 ACACCATGAGACAAGCTTATGC 58.987 45.455 0.00 0.0 38.81 3.14 R
5952 6075 1.064091 AGGTACTACTCCCTCCGTTCC 60.064 57.143 0.00 0.0 36.02 3.62 R
6952 7080 2.927477 CAAATTGCATGTCACATCCTGC 59.073 45.455 0.00 0.0 35.21 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.622770 AGGAAAATAAGCTTTGTACACGG 57.377 39.130 3.20 0.00 0.00 4.94
59 60 4.457949 AGGAAAATAAGCTTTGTACACGGG 59.542 41.667 3.20 0.00 0.00 5.28
60 61 4.380128 GGAAAATAAGCTTTGTACACGGGG 60.380 45.833 3.20 0.00 0.00 5.73
61 62 1.746470 ATAAGCTTTGTACACGGGGC 58.254 50.000 3.20 0.00 0.00 5.80
62 63 0.397187 TAAGCTTTGTACACGGGGCA 59.603 50.000 3.20 0.00 0.00 5.36
63 64 0.466555 AAGCTTTGTACACGGGGCAA 60.467 50.000 0.00 0.00 0.00 4.52
64 65 0.251165 AGCTTTGTACACGGGGCAAT 60.251 50.000 0.00 0.00 0.00 3.56
65 66 1.003812 AGCTTTGTACACGGGGCAATA 59.996 47.619 0.00 0.00 0.00 1.90
66 67 1.131693 GCTTTGTACACGGGGCAATAC 59.868 52.381 0.00 0.00 0.00 1.89
74 75 1.199097 CACGGGGCAATACAAAGTGAC 59.801 52.381 0.00 0.00 0.00 3.67
99 100 5.880054 TCCTTTACATTAAGAGCTTGCAC 57.120 39.130 0.00 0.00 0.00 4.57
104 105 3.019564 ACATTAAGAGCTTGCACATCCC 58.980 45.455 0.00 0.00 0.00 3.85
105 106 1.737838 TTAAGAGCTTGCACATCCCG 58.262 50.000 0.00 0.00 0.00 5.14
109 110 0.169009 GAGCTTGCACATCCCGAAAC 59.831 55.000 0.00 0.00 0.00 2.78
123 124 1.451651 CCGAAACAAAAAGCGCATGAC 59.548 47.619 11.47 0.00 0.00 3.06
129 130 2.159114 ACAAAAAGCGCATGACAACCTT 60.159 40.909 11.47 0.00 0.00 3.50
132 133 0.318955 AAGCGCATGACAACCTTTGC 60.319 50.000 11.47 0.00 0.00 3.68
142 143 0.600057 CAACCTTTGCTTCCCTCTGC 59.400 55.000 0.00 0.00 0.00 4.26
143 144 0.480252 AACCTTTGCTTCCCTCTGCT 59.520 50.000 0.00 0.00 0.00 4.24
203 204 9.013229 TGTGCAACAGTCAATATTATTCTTCTT 57.987 29.630 0.00 0.00 45.67 2.52
241 244 1.736126 CTCTTCGCAAGCATCATGTGT 59.264 47.619 0.00 0.00 37.18 3.72
255 258 5.508489 GCATCATGTGTTGGGGAAAGATATG 60.508 44.000 0.00 0.00 33.50 1.78
292 342 6.208599 TGAGGTAAATAAGTTTGGAGGCAAAG 59.791 38.462 0.00 0.00 0.00 2.77
293 343 6.075315 AGGTAAATAAGTTTGGAGGCAAAGT 58.925 36.000 0.00 0.00 0.00 2.66
294 344 6.015434 AGGTAAATAAGTTTGGAGGCAAAGTG 60.015 38.462 0.00 0.00 0.00 3.16
311 361 5.009110 GCAAAGTGATAAGCCCCTATCTTTC 59.991 44.000 0.00 0.00 30.80 2.62
317 367 6.876257 GTGATAAGCCCCTATCTTTCTATGTG 59.124 42.308 1.20 0.00 30.80 3.21
321 371 4.346418 AGCCCCTATCTTTCTATGTGTCTG 59.654 45.833 0.00 0.00 0.00 3.51
339 389 2.872245 TCTGACTGAAACTTTTGCTCCG 59.128 45.455 0.00 0.00 0.00 4.63
350 400 6.811253 AACTTTTGCTCCGTAAATATGTCA 57.189 33.333 0.00 0.00 0.00 3.58
426 480 8.541133 AACAAAGCTCTTACATAGACTCTTTC 57.459 34.615 0.00 0.00 32.53 2.62
427 481 7.100409 ACAAAGCTCTTACATAGACTCTTTCC 58.900 38.462 0.00 0.00 32.53 3.13
429 483 4.339814 AGCTCTTACATAGACTCTTTCCGG 59.660 45.833 0.00 0.00 0.00 5.14
451 505 7.500892 TCCGGTAATATGATAAAGTGCAATTGT 59.499 33.333 7.40 0.00 0.00 2.71
462 516 3.993920 AGTGCAATTGTTTCAATGACCC 58.006 40.909 7.40 0.00 0.00 4.46
464 518 4.040706 AGTGCAATTGTTTCAATGACCCAT 59.959 37.500 7.40 0.00 0.00 4.00
473 527 8.821686 TTGTTTCAATGACCCATATCATAGTT 57.178 30.769 0.00 0.00 38.40 2.24
475 529 8.902806 TGTTTCAATGACCCATATCATAGTTTC 58.097 33.333 0.00 0.00 38.40 2.78
522 576 8.779354 AGTTCATACTTTATCTTGAGACCAAC 57.221 34.615 0.00 0.00 0.00 3.77
523 577 7.824779 AGTTCATACTTTATCTTGAGACCAACC 59.175 37.037 0.00 0.00 0.00 3.77
524 578 6.338146 TCATACTTTATCTTGAGACCAACCG 58.662 40.000 0.00 0.00 0.00 4.44
525 579 4.884668 ACTTTATCTTGAGACCAACCGA 57.115 40.909 0.00 0.00 0.00 4.69
526 580 4.566987 ACTTTATCTTGAGACCAACCGAC 58.433 43.478 0.00 0.00 0.00 4.79
527 581 3.604875 TTATCTTGAGACCAACCGACC 57.395 47.619 0.00 0.00 0.00 4.79
528 582 1.348064 ATCTTGAGACCAACCGACCA 58.652 50.000 0.00 0.00 0.00 4.02
529 583 1.124780 TCTTGAGACCAACCGACCAA 58.875 50.000 0.00 0.00 0.00 3.67
530 584 1.697432 TCTTGAGACCAACCGACCAAT 59.303 47.619 0.00 0.00 0.00 3.16
531 585 2.076863 CTTGAGACCAACCGACCAATC 58.923 52.381 0.00 0.00 0.00 2.67
532 586 0.323629 TGAGACCAACCGACCAATCC 59.676 55.000 0.00 0.00 0.00 3.01
533 587 0.323629 GAGACCAACCGACCAATCCA 59.676 55.000 0.00 0.00 0.00 3.41
534 588 0.991920 AGACCAACCGACCAATCCAT 59.008 50.000 0.00 0.00 0.00 3.41
535 589 1.094785 GACCAACCGACCAATCCATG 58.905 55.000 0.00 0.00 0.00 3.66
561 615 3.956377 GAGCCATCGAGGGAGGAA 58.044 61.111 22.53 0.00 38.09 3.36
562 616 2.446512 GAGCCATCGAGGGAGGAAT 58.553 57.895 22.53 0.00 38.09 3.01
563 617 0.034616 GAGCCATCGAGGGAGGAATG 59.965 60.000 22.53 0.00 38.09 2.67
564 618 1.072159 GCCATCGAGGGAGGAATGG 59.928 63.158 22.53 6.68 38.09 3.16
565 619 1.410850 GCCATCGAGGGAGGAATGGA 61.411 60.000 22.53 0.00 38.09 3.41
566 620 1.356124 CCATCGAGGGAGGAATGGAT 58.644 55.000 11.55 0.00 0.00 3.41
567 621 1.002888 CCATCGAGGGAGGAATGGATG 59.997 57.143 11.55 0.00 33.07 3.51
568 622 1.973515 CATCGAGGGAGGAATGGATGA 59.026 52.381 0.00 0.00 34.62 2.92
569 623 1.414158 TCGAGGGAGGAATGGATGAC 58.586 55.000 0.00 0.00 0.00 3.06
570 624 0.032678 CGAGGGAGGAATGGATGACG 59.967 60.000 0.00 0.00 0.00 4.35
571 625 1.414158 GAGGGAGGAATGGATGACGA 58.586 55.000 0.00 0.00 0.00 4.20
572 626 1.342819 GAGGGAGGAATGGATGACGAG 59.657 57.143 0.00 0.00 0.00 4.18
573 627 0.250081 GGGAGGAATGGATGACGAGC 60.250 60.000 0.00 0.00 0.00 5.03
574 628 0.465705 GGAGGAATGGATGACGAGCA 59.534 55.000 0.00 0.00 0.00 4.26
575 629 1.576356 GAGGAATGGATGACGAGCAC 58.424 55.000 0.00 0.00 0.00 4.40
576 630 0.179100 AGGAATGGATGACGAGCACG 60.179 55.000 0.76 0.76 45.75 5.34
586 640 2.481919 CGAGCACGTACAGGCGTA 59.518 61.111 0.00 0.00 43.83 4.42
587 641 1.582937 CGAGCACGTACAGGCGTAG 60.583 63.158 0.00 0.00 43.83 3.51
588 642 1.226603 GAGCACGTACAGGCGTAGG 60.227 63.158 0.00 7.35 43.83 3.18
589 643 1.651240 GAGCACGTACAGGCGTAGGA 61.651 60.000 13.30 0.00 43.83 2.94
590 644 1.213537 GCACGTACAGGCGTAGGAA 59.786 57.895 13.30 0.00 43.83 3.36
591 645 0.179119 GCACGTACAGGCGTAGGAAT 60.179 55.000 13.30 0.00 43.83 3.01
592 646 1.836383 CACGTACAGGCGTAGGAATC 58.164 55.000 13.30 0.00 43.83 2.52
593 647 1.133598 CACGTACAGGCGTAGGAATCA 59.866 52.381 13.30 0.00 43.83 2.57
594 648 2.029623 ACGTACAGGCGTAGGAATCAT 58.970 47.619 13.30 0.00 43.83 2.45
595 649 3.004002 CACGTACAGGCGTAGGAATCATA 59.996 47.826 13.30 0.00 43.83 2.15
596 650 3.004106 ACGTACAGGCGTAGGAATCATAC 59.996 47.826 13.30 0.00 43.83 2.39
597 651 2.795175 ACAGGCGTAGGAATCATACG 57.205 50.000 21.07 21.07 46.71 3.06
598 652 2.304092 ACAGGCGTAGGAATCATACGA 58.696 47.619 27.95 0.00 46.89 3.43
600 654 1.682982 GGCGTAGGAATCATACGACG 58.317 55.000 27.95 7.93 46.89 5.12
601 655 1.665161 GGCGTAGGAATCATACGACGG 60.665 57.143 27.95 2.81 46.89 4.79
602 656 1.665161 GCGTAGGAATCATACGACGGG 60.665 57.143 27.95 2.46 46.89 5.28
603 657 1.875514 CGTAGGAATCATACGACGGGA 59.124 52.381 20.84 0.00 46.89 5.14
604 658 2.486982 CGTAGGAATCATACGACGGGAT 59.513 50.000 20.84 0.00 46.89 3.85
605 659 3.669824 CGTAGGAATCATACGACGGGATG 60.670 52.174 20.84 2.63 46.89 3.51
606 660 2.594131 AGGAATCATACGACGGGATGA 58.406 47.619 14.65 14.65 36.54 2.92
607 661 2.963101 AGGAATCATACGACGGGATGAA 59.037 45.455 15.82 3.76 35.76 2.57
608 662 3.578716 AGGAATCATACGACGGGATGAAT 59.421 43.478 15.82 9.68 35.76 2.57
609 663 3.927142 GGAATCATACGACGGGATGAATC 59.073 47.826 15.82 15.98 35.76 2.52
610 664 4.556233 GAATCATACGACGGGATGAATCA 58.444 43.478 18.10 0.00 35.76 2.57
611 665 3.643159 TCATACGACGGGATGAATCAG 57.357 47.619 11.08 0.00 0.00 2.90
612 666 3.219281 TCATACGACGGGATGAATCAGA 58.781 45.455 11.08 0.00 0.00 3.27
613 667 3.004419 TCATACGACGGGATGAATCAGAC 59.996 47.826 11.08 0.00 0.00 3.51
614 668 0.100682 ACGACGGGATGAATCAGACG 59.899 55.000 0.00 3.18 33.50 4.18
615 669 0.595053 CGACGGGATGAATCAGACGG 60.595 60.000 8.41 2.13 0.00 4.79
616 670 0.744874 GACGGGATGAATCAGACGGA 59.255 55.000 8.41 0.00 0.00 4.69
617 671 0.747255 ACGGGATGAATCAGACGGAG 59.253 55.000 8.41 0.00 0.00 4.63
631 685 2.503920 ACGGAGTGTGTGACAGTTAC 57.496 50.000 0.00 0.00 42.51 2.50
632 686 1.068127 ACGGAGTGTGTGACAGTTACC 59.932 52.381 0.00 0.00 42.51 2.85
633 687 1.067974 CGGAGTGTGTGACAGTTACCA 59.932 52.381 0.00 0.00 30.64 3.25
634 688 2.480845 GGAGTGTGTGACAGTTACCAC 58.519 52.381 8.26 8.26 30.64 4.16
635 689 2.124903 GAGTGTGTGACAGTTACCACG 58.875 52.381 9.78 0.00 36.15 4.94
636 690 0.580104 GTGTGTGACAGTTACCACGC 59.420 55.000 0.00 0.00 42.33 5.34
637 691 0.531090 TGTGTGACAGTTACCACGCC 60.531 55.000 0.00 0.00 41.58 5.68
638 692 1.070105 TGTGACAGTTACCACGCCC 59.930 57.895 0.00 0.00 36.15 6.13
639 693 1.070105 GTGACAGTTACCACGCCCA 59.930 57.895 0.00 0.00 0.00 5.36
640 694 0.321298 GTGACAGTTACCACGCCCAT 60.321 55.000 0.00 0.00 0.00 4.00
641 695 0.036765 TGACAGTTACCACGCCCATC 60.037 55.000 0.00 0.00 0.00 3.51
642 696 0.249398 GACAGTTACCACGCCCATCT 59.751 55.000 0.00 0.00 0.00 2.90
643 697 0.249398 ACAGTTACCACGCCCATCTC 59.751 55.000 0.00 0.00 0.00 2.75
644 698 0.806102 CAGTTACCACGCCCATCTCG 60.806 60.000 0.00 0.00 0.00 4.04
645 699 1.520787 GTTACCACGCCCATCTCGG 60.521 63.158 0.00 0.00 0.00 4.63
654 708 3.294750 CCATCTCGGGTTCGTGGA 58.705 61.111 0.00 0.00 33.51 4.02
655 709 1.153628 CCATCTCGGGTTCGTGGAC 60.154 63.158 0.00 0.00 33.51 4.02
656 710 1.516386 CATCTCGGGTTCGTGGACG 60.516 63.158 0.00 0.00 41.45 4.79
657 711 1.975407 ATCTCGGGTTCGTGGACGT 60.975 57.895 0.00 0.00 40.80 4.34
658 712 1.530013 ATCTCGGGTTCGTGGACGTT 61.530 55.000 0.00 0.00 40.80 3.99
659 713 1.731969 CTCGGGTTCGTGGACGTTC 60.732 63.158 0.00 0.00 40.80 3.95
660 714 2.735857 CGGGTTCGTGGACGTTCC 60.736 66.667 0.00 3.44 40.80 3.62
661 715 2.422591 GGGTTCGTGGACGTTCCA 59.577 61.111 13.77 3.02 45.98 3.53
672 726 3.550656 CGTTCCAGAAGACGTGCC 58.449 61.111 0.00 0.00 34.75 5.01
673 727 1.300620 CGTTCCAGAAGACGTGCCA 60.301 57.895 0.00 0.00 34.75 4.92
674 728 0.670546 CGTTCCAGAAGACGTGCCAT 60.671 55.000 0.00 0.00 34.75 4.40
675 729 0.798776 GTTCCAGAAGACGTGCCATG 59.201 55.000 0.00 0.00 0.00 3.66
676 730 0.321564 TTCCAGAAGACGTGCCATGG 60.322 55.000 7.63 7.63 0.00 3.66
677 731 2.401766 CCAGAAGACGTGCCATGGC 61.402 63.158 30.54 30.54 42.35 4.40
678 732 2.434884 AGAAGACGTGCCATGGCG 60.435 61.111 30.87 20.22 45.51 5.69
679 733 3.499737 GAAGACGTGCCATGGCGG 61.500 66.667 30.87 26.12 45.51 6.13
680 734 4.329545 AAGACGTGCCATGGCGGT 62.330 61.111 30.87 29.05 45.51 5.68
681 735 3.842925 AAGACGTGCCATGGCGGTT 62.843 57.895 30.87 17.43 45.51 4.44
682 736 3.799755 GACGTGCCATGGCGGTTC 61.800 66.667 30.87 21.51 45.51 3.62
683 737 4.329545 ACGTGCCATGGCGGTTCT 62.330 61.111 30.87 9.20 45.51 3.01
684 738 3.055719 CGTGCCATGGCGGTTCTT 61.056 61.111 30.87 0.00 45.51 2.52
685 739 2.568090 GTGCCATGGCGGTTCTTG 59.432 61.111 30.87 0.00 45.51 3.02
686 740 2.676121 TGCCATGGCGGTTCTTGG 60.676 61.111 30.87 0.00 45.51 3.61
687 741 2.676471 GCCATGGCGGTTCTTGGT 60.676 61.111 23.48 0.00 36.97 3.67
688 742 2.993471 GCCATGGCGGTTCTTGGTG 61.993 63.158 23.48 0.00 36.97 4.17
689 743 2.342650 CCATGGCGGTTCTTGGTGG 61.343 63.158 0.00 0.00 0.00 4.61
690 744 1.603455 CATGGCGGTTCTTGGTGGT 60.603 57.895 0.00 0.00 0.00 4.16
691 745 1.603455 ATGGCGGTTCTTGGTGGTG 60.603 57.895 0.00 0.00 0.00 4.17
692 746 2.983592 GGCGGTTCTTGGTGGTGG 60.984 66.667 0.00 0.00 0.00 4.61
693 747 2.203294 GCGGTTCTTGGTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
694 748 1.826487 GCGGTTCTTGGTGGTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
695 749 1.388837 GCGGTTCTTGGTGGTGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
696 750 1.107945 CGGTTCTTGGTGGTGGTTTT 58.892 50.000 0.00 0.00 0.00 2.43
697 751 2.299521 CGGTTCTTGGTGGTGGTTTTA 58.700 47.619 0.00 0.00 0.00 1.52
698 752 2.292292 CGGTTCTTGGTGGTGGTTTTAG 59.708 50.000 0.00 0.00 0.00 1.85
699 753 2.035449 GGTTCTTGGTGGTGGTTTTAGC 59.965 50.000 0.00 0.00 0.00 3.09
700 754 1.989706 TCTTGGTGGTGGTTTTAGCC 58.010 50.000 0.00 0.00 0.00 3.93
701 755 0.596082 CTTGGTGGTGGTTTTAGCCG 59.404 55.000 0.00 0.00 0.00 5.52
702 756 0.824182 TTGGTGGTGGTTTTAGCCGG 60.824 55.000 0.00 0.00 0.00 6.13
703 757 1.228337 GGTGGTGGTTTTAGCCGGT 60.228 57.895 1.90 0.00 0.00 5.28
704 758 0.824595 GGTGGTGGTTTTAGCCGGTT 60.825 55.000 1.90 0.00 0.00 4.44
705 759 1.034356 GTGGTGGTTTTAGCCGGTTT 58.966 50.000 1.90 0.00 0.00 3.27
706 760 1.409790 GTGGTGGTTTTAGCCGGTTTT 59.590 47.619 1.90 0.00 0.00 2.43
707 761 2.108970 TGGTGGTTTTAGCCGGTTTTT 58.891 42.857 1.90 0.00 0.00 1.94
743 797 1.017387 GAATCAGCCGTTGATGTCCC 58.983 55.000 0.00 0.00 45.82 4.46
744 798 0.744414 AATCAGCCGTTGATGTCCCG 60.744 55.000 0.00 0.00 45.82 5.14
750 804 1.664874 GCCGTTGATGTCCCGTTTTTC 60.665 52.381 0.00 0.00 0.00 2.29
753 807 2.546368 CGTTGATGTCCCGTTTTTCTCA 59.454 45.455 0.00 0.00 0.00 3.27
780 834 1.004277 CGTCTCTCCTGCGTTGTGTC 61.004 60.000 0.00 0.00 0.00 3.67
1509 1566 2.275380 AAATCACACCGGGCAAGGC 61.275 57.895 6.32 0.00 33.69 4.35
1638 1695 3.610040 TCATCTTTGTACCACATCGCT 57.390 42.857 0.00 0.00 0.00 4.93
1642 1699 6.811954 TCATCTTTGTACCACATCGCTATTA 58.188 36.000 0.00 0.00 0.00 0.98
1742 1800 1.631388 TCAGGCCAATAAGGTCCGAAA 59.369 47.619 5.01 0.00 45.84 3.46
1772 1830 2.993899 CTGGGTGCTGTAAACTAAGTCG 59.006 50.000 0.00 0.00 0.00 4.18
1909 1974 7.280876 GCTATTTGACAGTTGACATCTAATGGA 59.719 37.037 8.69 0.00 33.60 3.41
1910 1975 6.801539 TTTGACAGTTGACATCTAATGGAC 57.198 37.500 0.00 0.00 33.60 4.02
1946 2012 4.580580 AGTTTTCCTGCCACTTAGTTTCAG 59.419 41.667 4.31 4.31 0.00 3.02
2123 2189 3.884693 TGCTGAAGATGCTGTTCTGAAAA 59.115 39.130 0.00 0.00 0.00 2.29
2126 2192 5.335426 GCTGAAGATGCTGTTCTGAAAATCA 60.335 40.000 0.00 0.00 0.00 2.57
2487 2554 2.706339 AGTGATCATTCCACCAGAGC 57.294 50.000 0.00 0.00 35.23 4.09
2617 2684 2.253603 GTGCACTTCAATTCCATTCGC 58.746 47.619 10.32 0.00 0.00 4.70
2665 2732 6.183360 CCTTGAACATATCAGTGTGTCCATTC 60.183 42.308 0.00 0.00 39.77 2.67
2795 2862 3.489047 GCACGTCAGCAAGATCTATTCTC 59.511 47.826 0.00 0.00 31.78 2.87
2857 2924 2.103094 CCTTAAGTGATGGCGATGGAGA 59.897 50.000 0.97 0.00 0.00 3.71
2960 3027 4.602340 TGAAGTTAGAGGTGGAACAGAC 57.398 45.455 0.00 0.00 41.80 3.51
3090 3157 6.768483 TCTCATTAGATGGTTTGTTCACTCA 58.232 36.000 0.00 0.00 0.00 3.41
3154 3246 2.028203 CACCACCCATTCCCAATGAAAC 60.028 50.000 0.00 0.00 41.46 2.78
3173 3265 4.877323 AACGACTTCTTGTTTCAACCTC 57.123 40.909 0.00 0.00 0.00 3.85
3193 3285 7.715265 ACCTCTTATTTGTGCAATATAGTCG 57.285 36.000 0.00 0.00 0.00 4.18
3447 3539 0.179100 CCCCTACAGTGACATCAGCG 60.179 60.000 0.00 0.00 0.00 5.18
3491 3583 7.655819 TGGAGGTAATTGATATATTCCCCAA 57.344 36.000 0.00 0.00 0.00 4.12
3790 3882 4.272504 TGAAAACAAGAGGTCGTGATTCAC 59.727 41.667 6.73 6.73 33.82 3.18
3873 3965 7.765695 CCAAGCATGGGAGTATTACATTATT 57.234 36.000 0.00 0.00 43.51 1.40
3877 3969 9.592196 AAGCATGGGAGTATTACATTATTCATT 57.408 29.630 0.00 0.00 0.00 2.57
3959 4051 3.871594 CCTTGTCCGGACTGAATATTGAC 59.128 47.826 33.39 5.32 0.00 3.18
4053 4145 4.168101 TCCTTCCACCTTCTAGTGACATT 58.832 43.478 0.00 0.00 40.34 2.71
4056 4148 2.027192 TCCACCTTCTAGTGACATTGGC 60.027 50.000 0.00 0.00 40.34 4.52
4113 4207 6.390721 GTCTAGCAGTTGAGATGTGAGTTAA 58.609 40.000 0.00 0.00 0.00 2.01
4460 4565 4.309933 TCAATAGACTGAACACACAGCTG 58.690 43.478 13.48 13.48 41.06 4.24
4489 4594 7.285629 TGATCCTATCTCCGATGAACATATACC 59.714 40.741 0.00 0.00 0.00 2.73
5291 5405 7.115947 GCCATGAAAATTAAGAGCAAGCATATC 59.884 37.037 0.00 0.00 0.00 1.63
5566 5680 8.212259 ACTCTGATGGCTAATATATTTCAGGT 57.788 34.615 17.88 13.57 32.10 4.00
5815 5938 2.091885 TGCTCTTTTTGAGGTCAAGGGT 60.092 45.455 0.00 0.00 42.87 4.34
5902 6025 8.671384 TTTTTAATATTCACATACTCCCTCCG 57.329 34.615 0.00 0.00 0.00 4.63
5903 6026 6.989155 TTAATATTCACATACTCCCTCCGT 57.011 37.500 0.00 0.00 0.00 4.69
5904 6027 5.888982 AATATTCACATACTCCCTCCGTT 57.111 39.130 0.00 0.00 0.00 4.44
5905 6028 3.821421 ATTCACATACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
5906 6029 1.481871 TCACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
5907 6030 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
5908 6031 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
5909 6032 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
5910 6033 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
5911 6034 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
5912 6035 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
5913 6036 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5914 6037 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5915 6038 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5916 6039 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5917 6040 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5918 6041 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5919 6042 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5920 6043 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5921 6044 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5922 6045 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5923 6046 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5924 6047 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5925 6048 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5926 6049 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5927 6050 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
5928 6051 7.938140 TCCAAAATAGATGACCCAACTTTAG 57.062 36.000 0.00 0.00 0.00 1.85
5929 6052 7.466804 TCCAAAATAGATGACCCAACTTTAGT 58.533 34.615 0.00 0.00 0.00 2.24
5930 6053 8.607713 TCCAAAATAGATGACCCAACTTTAGTA 58.392 33.333 0.00 0.00 0.00 1.82
5931 6054 8.674607 CCAAAATAGATGACCCAACTTTAGTAC 58.325 37.037 0.00 0.00 0.00 2.73
5932 6055 9.226606 CAAAATAGATGACCCAACTTTAGTACA 57.773 33.333 0.00 0.00 0.00 2.90
5933 6056 9.802039 AAAATAGATGACCCAACTTTAGTACAA 57.198 29.630 0.00 0.00 0.00 2.41
5934 6057 9.802039 AAATAGATGACCCAACTTTAGTACAAA 57.198 29.630 0.00 0.00 0.00 2.83
5935 6058 9.449719 AATAGATGACCCAACTTTAGTACAAAG 57.550 33.333 13.08 13.08 0.00 2.77
5936 6059 6.838382 AGATGACCCAACTTTAGTACAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
5945 6068 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
5946 6069 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
5947 6070 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
5948 6071 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
5949 6072 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
5950 6073 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
5951 6074 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5952 6075 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5953 6076 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5954 6077 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5955 6078 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5956 6079 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5957 6080 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5958 6081 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5959 6082 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5960 6083 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5961 6084 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5962 6085 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5963 6086 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5964 6087 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6119 6242 7.715657 ACAGACTTAATTTTCACTTCATGCAA 58.284 30.769 0.00 0.00 0.00 4.08
6121 6244 7.648908 CAGACTTAATTTTCACTTCATGCAACA 59.351 33.333 0.00 0.00 0.00 3.33
6548 6676 6.183360 GGTTCTCACAATAAAACACAACAGGA 60.183 38.462 0.00 0.00 0.00 3.86
6669 6797 7.672239 AGTCCAAGGCAATTTAGGTAACATTTA 59.328 33.333 0.00 0.00 41.41 1.40
6670 6798 8.474831 GTCCAAGGCAATTTAGGTAACATTTAT 58.525 33.333 0.00 0.00 41.41 1.40
6719 6847 8.097038 AGGCTGTTTGTATAATATCATCATCGT 58.903 33.333 0.00 0.00 0.00 3.73
6730 6858 2.919228 TCATCATCGTCTTCTCGGAGA 58.081 47.619 2.97 2.97 0.00 3.71
6816 6944 8.303156 CAGATATGGTTATCTCTTAGGTGACAG 58.697 40.741 0.00 0.00 42.17 3.51
6825 6953 5.844004 TCTCTTAGGTGACAGAAAGAACAC 58.156 41.667 0.00 0.00 0.00 3.32
6907 7035 4.599047 TTGGCAACTGTAATCAAAAGGG 57.401 40.909 0.00 0.00 37.61 3.95
6908 7036 2.896685 TGGCAACTGTAATCAAAAGGGG 59.103 45.455 0.00 0.00 37.61 4.79
6952 7080 5.643379 TTTTCTTAGGCATAGCAACTTGG 57.357 39.130 0.00 0.00 0.00 3.61
6956 7084 0.682209 AGGCATAGCAACTTGGCAGG 60.682 55.000 0.00 0.00 40.61 4.85
7133 7263 8.546244 CATTGTGCAAGTTATGTCTAGTCATAG 58.454 37.037 9.21 1.16 32.85 2.23
7227 7439 6.283694 TGCATGCCAACTTATTGTACAAAAA 58.716 32.000 16.68 0.84 33.60 1.94
7264 7476 2.999185 TTCCAAATTCCCAGGAAGCT 57.001 45.000 5.21 0.00 36.55 3.74
7475 7687 5.872617 TGTAGGATCATGTTTAAACGTCCTG 59.127 40.000 27.27 17.40 0.00 3.86
7559 7771 7.715265 TGTTTATTGTTGTTGTTGTTGTTGT 57.285 28.000 0.00 0.00 0.00 3.32
7560 7772 8.142994 TGTTTATTGTTGTTGTTGTTGTTGTT 57.857 26.923 0.00 0.00 0.00 2.83
7561 7773 8.064222 TGTTTATTGTTGTTGTTGTTGTTGTTG 58.936 29.630 0.00 0.00 0.00 3.33
7562 7774 7.715265 TTATTGTTGTTGTTGTTGTTGTTGT 57.285 28.000 0.00 0.00 0.00 3.32
7563 7775 6.610741 ATTGTTGTTGTTGTTGTTGTTGTT 57.389 29.167 0.00 0.00 0.00 2.83
7564 7776 7.715265 ATTGTTGTTGTTGTTGTTGTTGTTA 57.285 28.000 0.00 0.00 0.00 2.41
7565 7777 7.715265 TTGTTGTTGTTGTTGTTGTTGTTAT 57.285 28.000 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.241367 CCGTGTACAAAGCTTATTTTCCTTTAT 58.759 33.333 0.00 0.00 0.00 1.40
33 34 7.308710 CCCGTGTACAAAGCTTATTTTCCTTTA 60.309 37.037 0.00 0.00 0.00 1.85
34 35 6.443792 CCGTGTACAAAGCTTATTTTCCTTT 58.556 36.000 0.00 0.00 0.00 3.11
35 36 5.048294 CCCGTGTACAAAGCTTATTTTCCTT 60.048 40.000 0.00 0.00 0.00 3.36
36 37 4.457949 CCCGTGTACAAAGCTTATTTTCCT 59.542 41.667 0.00 0.00 0.00 3.36
37 38 4.380128 CCCCGTGTACAAAGCTTATTTTCC 60.380 45.833 0.00 0.00 0.00 3.13
38 39 4.729595 CCCCGTGTACAAAGCTTATTTTC 58.270 43.478 0.00 0.00 0.00 2.29
39 40 3.057104 GCCCCGTGTACAAAGCTTATTTT 60.057 43.478 0.00 0.00 0.00 1.82
40 41 2.490509 GCCCCGTGTACAAAGCTTATTT 59.509 45.455 0.00 0.00 0.00 1.40
41 42 2.089201 GCCCCGTGTACAAAGCTTATT 58.911 47.619 0.00 0.00 0.00 1.40
42 43 1.003812 TGCCCCGTGTACAAAGCTTAT 59.996 47.619 0.00 0.00 0.00 1.73
43 44 0.397187 TGCCCCGTGTACAAAGCTTA 59.603 50.000 0.00 0.00 0.00 3.09
44 45 0.466555 TTGCCCCGTGTACAAAGCTT 60.467 50.000 0.00 0.00 0.00 3.74
45 46 0.251165 ATTGCCCCGTGTACAAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
46 47 1.131693 GTATTGCCCCGTGTACAAAGC 59.868 52.381 0.00 0.00 0.00 3.51
47 48 2.428491 TGTATTGCCCCGTGTACAAAG 58.572 47.619 0.00 0.00 0.00 2.77
48 49 2.563261 TGTATTGCCCCGTGTACAAA 57.437 45.000 0.00 0.00 0.00 2.83
49 50 2.563261 TTGTATTGCCCCGTGTACAA 57.437 45.000 0.00 0.00 35.39 2.41
50 51 2.224572 ACTTTGTATTGCCCCGTGTACA 60.225 45.455 0.00 0.00 0.00 2.90
51 52 2.160813 CACTTTGTATTGCCCCGTGTAC 59.839 50.000 0.00 0.00 0.00 2.90
52 53 2.038689 TCACTTTGTATTGCCCCGTGTA 59.961 45.455 0.00 0.00 0.00 2.90
53 54 1.202830 TCACTTTGTATTGCCCCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
54 55 1.199097 GTCACTTTGTATTGCCCCGTG 59.801 52.381 0.00 0.00 0.00 4.94
55 56 1.202830 TGTCACTTTGTATTGCCCCGT 60.203 47.619 0.00 0.00 0.00 5.28
56 57 1.529226 TGTCACTTTGTATTGCCCCG 58.471 50.000 0.00 0.00 0.00 5.73
57 58 3.119137 GGAATGTCACTTTGTATTGCCCC 60.119 47.826 0.00 0.00 0.00 5.80
58 59 3.763897 AGGAATGTCACTTTGTATTGCCC 59.236 43.478 0.00 0.00 0.00 5.36
59 60 5.391312 AAGGAATGTCACTTTGTATTGCC 57.609 39.130 0.00 0.00 0.00 4.52
60 61 7.367285 TGTAAAGGAATGTCACTTTGTATTGC 58.633 34.615 0.00 0.00 37.48 3.56
61 62 9.912634 AATGTAAAGGAATGTCACTTTGTATTG 57.087 29.630 0.00 0.00 37.48 1.90
65 66 9.349713 TCTTAATGTAAAGGAATGTCACTTTGT 57.650 29.630 0.00 0.00 37.48 2.83
66 67 9.831737 CTCTTAATGTAAAGGAATGTCACTTTG 57.168 33.333 0.00 0.00 37.48 2.77
74 75 6.749118 GTGCAAGCTCTTAATGTAAAGGAATG 59.251 38.462 0.00 0.00 0.00 2.67
99 100 1.059942 GCGCTTTTTGTTTCGGGATG 58.940 50.000 0.00 0.00 0.00 3.51
104 105 2.115595 TGTCATGCGCTTTTTGTTTCG 58.884 42.857 9.73 0.00 0.00 3.46
105 106 3.302415 GGTTGTCATGCGCTTTTTGTTTC 60.302 43.478 9.73 0.00 0.00 2.78
109 110 2.138596 AGGTTGTCATGCGCTTTTTG 57.861 45.000 9.73 1.11 0.00 2.44
123 124 0.600057 GCAGAGGGAAGCAAAGGTTG 59.400 55.000 0.00 0.00 0.00 3.77
178 179 9.846248 AAAGAAGAATAATATTGACTGTTGCAC 57.154 29.630 0.00 0.00 0.00 4.57
203 204 8.291032 TGCGAAGAGAAAATAAAAACGGAATAA 58.709 29.630 0.00 0.00 0.00 1.40
210 211 6.747659 TGCTTGCGAAGAGAAAATAAAAAC 57.252 33.333 0.00 0.00 0.00 2.43
226 229 0.457166 CCCAACACATGATGCTTGCG 60.457 55.000 0.00 0.00 0.00 4.85
241 244 5.399727 GGGTAATGTCCATATCTTTCCCCAA 60.400 44.000 0.00 0.00 0.00 4.12
282 332 1.340991 GGGCTTATCACTTTGCCTCCA 60.341 52.381 0.00 0.00 44.36 3.86
292 342 6.876257 CACATAGAAAGATAGGGGCTTATCAC 59.124 42.308 10.61 4.18 33.41 3.06
293 343 6.558775 ACACATAGAAAGATAGGGGCTTATCA 59.441 38.462 10.61 0.00 33.41 2.15
294 344 7.010339 ACACATAGAAAGATAGGGGCTTATC 57.990 40.000 2.61 2.61 0.00 1.75
311 361 6.017605 AGCAAAAGTTTCAGTCAGACACATAG 60.018 38.462 2.66 0.00 29.15 2.23
317 367 3.303395 CGGAGCAAAAGTTTCAGTCAGAC 60.303 47.826 0.00 0.00 0.00 3.51
321 371 4.806342 TTACGGAGCAAAAGTTTCAGTC 57.194 40.909 0.00 0.00 0.00 3.51
339 389 6.908870 TGCTGACACTCATGACATATTTAC 57.091 37.500 0.00 0.00 30.00 2.01
350 400 6.047870 GTCTTCTATGATTGCTGACACTCAT 58.952 40.000 4.61 4.61 45.25 2.90
390 444 3.438360 AGAGCTTTGTTTTGCAAGTTCG 58.562 40.909 0.00 0.00 38.47 3.95
399 453 8.910351 AAGAGTCTATGTAAGAGCTTTGTTTT 57.090 30.769 0.00 0.00 33.88 2.43
404 458 6.334202 CGGAAAGAGTCTATGTAAGAGCTTT 58.666 40.000 0.00 0.00 40.27 3.51
405 459 5.163499 CCGGAAAGAGTCTATGTAAGAGCTT 60.163 44.000 0.00 0.00 33.88 3.74
406 460 4.339814 CCGGAAAGAGTCTATGTAAGAGCT 59.660 45.833 0.00 0.00 33.88 4.09
407 461 4.098196 ACCGGAAAGAGTCTATGTAAGAGC 59.902 45.833 9.46 0.00 33.88 4.09
426 480 7.648142 ACAATTGCACTTTATCATATTACCGG 58.352 34.615 5.05 0.00 0.00 5.28
427 481 9.515020 AAACAATTGCACTTTATCATATTACCG 57.485 29.630 5.05 0.00 0.00 4.02
451 505 9.699410 AAGAAACTATGATATGGGTCATTGAAA 57.301 29.630 5.57 0.00 39.45 2.69
497 551 7.824779 GGTTGGTCTCAAGATAAAGTATGAACT 59.175 37.037 0.00 0.00 33.28 3.01
515 569 0.991920 ATGGATTGGTCGGTTGGTCT 59.008 50.000 0.00 0.00 0.00 3.85
516 570 1.094785 CATGGATTGGTCGGTTGGTC 58.905 55.000 0.00 0.00 0.00 4.02
517 571 0.323360 CCATGGATTGGTCGGTTGGT 60.323 55.000 5.56 0.00 40.99 3.67
518 572 0.034574 TCCATGGATTGGTCGGTTGG 60.035 55.000 11.44 0.00 46.52 3.77
519 573 1.677576 CATCCATGGATTGGTCGGTTG 59.322 52.381 25.20 8.16 46.52 3.77
520 574 2.057137 CATCCATGGATTGGTCGGTT 57.943 50.000 25.20 0.00 46.52 4.44
521 575 3.806941 CATCCATGGATTGGTCGGT 57.193 52.632 25.20 0.00 46.52 4.69
531 585 0.327259 ATGGCTCGATCCATCCATGG 59.673 55.000 15.02 4.97 43.00 3.66
532 586 3.950869 ATGGCTCGATCCATCCATG 57.049 52.632 15.02 0.00 43.00 3.66
543 597 1.467678 ATTCCTCCCTCGATGGCTCG 61.468 60.000 1.18 0.77 46.41 5.03
544 598 0.034616 CATTCCTCCCTCGATGGCTC 59.965 60.000 1.18 0.00 0.00 4.70
545 599 1.414061 CCATTCCTCCCTCGATGGCT 61.414 60.000 1.18 0.00 33.34 4.75
546 600 1.072159 CCATTCCTCCCTCGATGGC 59.928 63.158 1.18 0.00 33.34 4.40
547 601 1.002888 CATCCATTCCTCCCTCGATGG 59.997 57.143 0.00 0.00 40.28 3.51
548 602 1.973515 TCATCCATTCCTCCCTCGATG 59.026 52.381 0.00 0.00 0.00 3.84
549 603 1.974236 GTCATCCATTCCTCCCTCGAT 59.026 52.381 0.00 0.00 0.00 3.59
550 604 1.414158 GTCATCCATTCCTCCCTCGA 58.586 55.000 0.00 0.00 0.00 4.04
551 605 0.032678 CGTCATCCATTCCTCCCTCG 59.967 60.000 0.00 0.00 0.00 4.63
552 606 1.342819 CTCGTCATCCATTCCTCCCTC 59.657 57.143 0.00 0.00 0.00 4.30
553 607 1.418334 CTCGTCATCCATTCCTCCCT 58.582 55.000 0.00 0.00 0.00 4.20
554 608 0.250081 GCTCGTCATCCATTCCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
555 609 0.465705 TGCTCGTCATCCATTCCTCC 59.534 55.000 0.00 0.00 0.00 4.30
556 610 1.576356 GTGCTCGTCATCCATTCCTC 58.424 55.000 0.00 0.00 0.00 3.71
557 611 0.179100 CGTGCTCGTCATCCATTCCT 60.179 55.000 0.00 0.00 0.00 3.36
558 612 2.301505 CGTGCTCGTCATCCATTCC 58.698 57.895 0.00 0.00 0.00 3.01
575 629 2.795175 ATGATTCCTACGCCTGTACG 57.205 50.000 0.00 0.00 39.50 3.67
576 630 3.251729 TCGTATGATTCCTACGCCTGTAC 59.748 47.826 14.36 0.00 41.24 2.90
577 631 3.251729 GTCGTATGATTCCTACGCCTGTA 59.748 47.826 14.36 0.00 41.24 2.74
578 632 2.034305 GTCGTATGATTCCTACGCCTGT 59.966 50.000 14.36 0.00 41.24 4.00
579 633 2.662700 GTCGTATGATTCCTACGCCTG 58.337 52.381 14.36 0.00 41.24 4.85
580 634 1.266175 CGTCGTATGATTCCTACGCCT 59.734 52.381 14.36 0.00 41.24 5.52
581 635 1.665161 CCGTCGTATGATTCCTACGCC 60.665 57.143 14.36 4.91 41.24 5.68
582 636 1.665161 CCCGTCGTATGATTCCTACGC 60.665 57.143 14.36 9.81 41.24 4.42
583 637 1.875514 TCCCGTCGTATGATTCCTACG 59.124 52.381 13.34 13.34 42.47 3.51
584 638 3.504906 TCATCCCGTCGTATGATTCCTAC 59.495 47.826 3.99 0.00 0.00 3.18
585 639 3.758425 TCATCCCGTCGTATGATTCCTA 58.242 45.455 3.99 0.00 0.00 2.94
586 640 2.594131 TCATCCCGTCGTATGATTCCT 58.406 47.619 3.99 0.00 0.00 3.36
587 641 3.380479 TTCATCCCGTCGTATGATTCC 57.620 47.619 7.97 0.00 32.40 3.01
588 642 4.556233 TGATTCATCCCGTCGTATGATTC 58.444 43.478 15.70 15.70 34.97 2.52
589 643 4.280929 TCTGATTCATCCCGTCGTATGATT 59.719 41.667 7.97 5.51 32.40 2.57
590 644 3.826729 TCTGATTCATCCCGTCGTATGAT 59.173 43.478 7.97 0.00 32.40 2.45
591 645 3.004419 GTCTGATTCATCCCGTCGTATGA 59.996 47.826 3.99 3.99 0.00 2.15
592 646 3.309388 GTCTGATTCATCCCGTCGTATG 58.691 50.000 0.00 0.00 0.00 2.39
593 647 2.031069 CGTCTGATTCATCCCGTCGTAT 60.031 50.000 0.00 0.00 0.00 3.06
594 648 1.332686 CGTCTGATTCATCCCGTCGTA 59.667 52.381 0.00 0.00 0.00 3.43
595 649 0.100682 CGTCTGATTCATCCCGTCGT 59.899 55.000 0.00 0.00 0.00 4.34
596 650 0.595053 CCGTCTGATTCATCCCGTCG 60.595 60.000 0.00 0.00 0.00 5.12
597 651 0.744874 TCCGTCTGATTCATCCCGTC 59.255 55.000 0.00 0.00 0.00 4.79
598 652 0.747255 CTCCGTCTGATTCATCCCGT 59.253 55.000 0.00 0.00 0.00 5.28
599 653 0.747255 ACTCCGTCTGATTCATCCCG 59.253 55.000 0.00 0.00 0.00 5.14
600 654 1.482593 ACACTCCGTCTGATTCATCCC 59.517 52.381 0.00 0.00 0.00 3.85
601 655 2.093973 ACACACTCCGTCTGATTCATCC 60.094 50.000 0.00 0.00 0.00 3.51
602 656 2.926200 CACACACTCCGTCTGATTCATC 59.074 50.000 0.00 0.00 0.00 2.92
603 657 2.562738 TCACACACTCCGTCTGATTCAT 59.437 45.455 0.00 0.00 0.00 2.57
604 658 1.960689 TCACACACTCCGTCTGATTCA 59.039 47.619 0.00 0.00 0.00 2.57
605 659 2.288213 TGTCACACACTCCGTCTGATTC 60.288 50.000 0.00 0.00 0.00 2.52
606 660 1.686587 TGTCACACACTCCGTCTGATT 59.313 47.619 0.00 0.00 0.00 2.57
607 661 1.270826 CTGTCACACACTCCGTCTGAT 59.729 52.381 0.00 0.00 0.00 2.90
608 662 0.668535 CTGTCACACACTCCGTCTGA 59.331 55.000 0.00 0.00 0.00 3.27
609 663 0.385751 ACTGTCACACACTCCGTCTG 59.614 55.000 0.00 0.00 0.00 3.51
610 664 1.112113 AACTGTCACACACTCCGTCT 58.888 50.000 0.00 0.00 0.00 4.18
611 665 2.391879 GTAACTGTCACACACTCCGTC 58.608 52.381 0.00 0.00 0.00 4.79
612 666 1.068127 GGTAACTGTCACACACTCCGT 59.932 52.381 0.00 0.00 0.00 4.69
613 667 1.067974 TGGTAACTGTCACACACTCCG 59.932 52.381 0.00 0.00 37.61 4.63
614 668 2.480845 GTGGTAACTGTCACACACTCC 58.519 52.381 0.00 0.00 34.16 3.85
615 669 2.124903 CGTGGTAACTGTCACACACTC 58.875 52.381 9.19 0.00 33.62 3.51
616 670 1.805120 GCGTGGTAACTGTCACACACT 60.805 52.381 9.19 0.00 33.62 3.55
617 671 0.580104 GCGTGGTAACTGTCACACAC 59.420 55.000 9.19 2.75 33.62 3.82
618 672 0.531090 GGCGTGGTAACTGTCACACA 60.531 55.000 9.19 0.00 33.62 3.72
619 673 1.226030 GGGCGTGGTAACTGTCACAC 61.226 60.000 0.00 0.00 33.83 3.82
620 674 1.070105 GGGCGTGGTAACTGTCACA 59.930 57.895 0.00 0.00 33.83 3.58
621 675 0.321298 ATGGGCGTGGTAACTGTCAC 60.321 55.000 0.00 0.00 37.61 3.67
622 676 0.036765 GATGGGCGTGGTAACTGTCA 60.037 55.000 0.00 0.00 37.61 3.58
623 677 0.249398 AGATGGGCGTGGTAACTGTC 59.751 55.000 0.00 0.00 37.61 3.51
624 678 0.249398 GAGATGGGCGTGGTAACTGT 59.751 55.000 0.00 0.00 37.61 3.55
625 679 0.806102 CGAGATGGGCGTGGTAACTG 60.806 60.000 0.00 0.00 37.61 3.16
626 680 1.515954 CGAGATGGGCGTGGTAACT 59.484 57.895 0.00 0.00 37.61 2.24
627 681 1.520787 CCGAGATGGGCGTGGTAAC 60.521 63.158 0.00 0.00 0.00 2.50
628 682 2.897207 CCGAGATGGGCGTGGTAA 59.103 61.111 0.00 0.00 0.00 2.85
637 691 1.153628 GTCCACGAACCCGAGATGG 60.154 63.158 0.00 0.00 39.50 3.51
638 692 1.516386 CGTCCACGAACCCGAGATG 60.516 63.158 0.00 0.00 43.02 2.90
639 693 1.530013 AACGTCCACGAACCCGAGAT 61.530 55.000 6.03 0.00 43.02 2.75
640 694 2.133742 GAACGTCCACGAACCCGAGA 62.134 60.000 6.03 0.00 43.02 4.04
641 695 1.731969 GAACGTCCACGAACCCGAG 60.732 63.158 6.03 0.00 43.02 4.63
642 696 2.336088 GAACGTCCACGAACCCGA 59.664 61.111 6.03 0.00 43.02 5.14
643 697 2.735857 GGAACGTCCACGAACCCG 60.736 66.667 6.03 0.00 43.02 5.28
644 698 1.666872 CTGGAACGTCCACGAACCC 60.667 63.158 6.03 4.44 42.67 4.11
645 699 0.249573 TTCTGGAACGTCCACGAACC 60.250 55.000 6.03 8.91 42.67 3.62
646 700 1.137513 CTTCTGGAACGTCCACGAAC 58.862 55.000 6.03 0.00 42.67 3.95
647 701 1.034356 TCTTCTGGAACGTCCACGAA 58.966 50.000 6.03 9.33 42.67 3.85
648 702 0.313043 GTCTTCTGGAACGTCCACGA 59.687 55.000 6.03 3.47 42.67 4.35
649 703 1.002250 CGTCTTCTGGAACGTCCACG 61.002 60.000 0.00 0.00 42.67 4.94
650 704 0.031721 ACGTCTTCTGGAACGTCCAC 59.968 55.000 3.02 0.00 42.67 4.02
651 705 0.031585 CACGTCTTCTGGAACGTCCA 59.968 55.000 6.57 6.57 45.98 4.02
652 706 1.282930 GCACGTCTTCTGGAACGTCC 61.283 60.000 0.00 0.00 36.64 4.79
653 707 1.282930 GGCACGTCTTCTGGAACGTC 61.283 60.000 0.00 0.00 36.64 4.34
654 708 1.300697 GGCACGTCTTCTGGAACGT 60.301 57.895 0.00 0.00 39.55 3.99
655 709 0.670546 ATGGCACGTCTTCTGGAACG 60.671 55.000 0.00 0.00 0.00 3.95
656 710 0.798776 CATGGCACGTCTTCTGGAAC 59.201 55.000 0.00 0.00 0.00 3.62
657 711 0.321564 CCATGGCACGTCTTCTGGAA 60.322 55.000 0.00 0.00 0.00 3.53
658 712 1.296392 CCATGGCACGTCTTCTGGA 59.704 57.895 0.00 0.00 0.00 3.86
659 713 2.401766 GCCATGGCACGTCTTCTGG 61.402 63.158 32.08 0.00 41.49 3.86
660 714 2.743752 CGCCATGGCACGTCTTCTG 61.744 63.158 34.93 12.63 42.06 3.02
661 715 2.434884 CGCCATGGCACGTCTTCT 60.435 61.111 34.93 0.00 42.06 2.85
662 716 3.499737 CCGCCATGGCACGTCTTC 61.500 66.667 34.93 4.54 42.06 2.87
663 717 3.842925 AACCGCCATGGCACGTCTT 62.843 57.895 34.93 15.28 43.94 3.01
664 718 4.329545 AACCGCCATGGCACGTCT 62.330 61.111 34.93 17.13 43.94 4.18
665 719 3.799755 GAACCGCCATGGCACGTC 61.800 66.667 34.93 23.24 43.94 4.34
666 720 3.842925 AAGAACCGCCATGGCACGT 62.843 57.895 34.93 26.37 43.94 4.49
667 721 3.055719 AAGAACCGCCATGGCACG 61.056 61.111 34.93 25.70 43.94 5.34
668 722 2.568090 CAAGAACCGCCATGGCAC 59.432 61.111 34.93 21.73 43.94 5.01
669 723 2.676121 CCAAGAACCGCCATGGCA 60.676 61.111 34.93 0.00 43.94 4.92
670 724 2.676471 ACCAAGAACCGCCATGGC 60.676 61.111 27.67 27.67 43.94 4.40
671 725 2.342650 CCACCAAGAACCGCCATGG 61.343 63.158 7.63 7.63 46.41 3.66
672 726 1.603455 ACCACCAAGAACCGCCATG 60.603 57.895 0.00 0.00 0.00 3.66
673 727 1.603455 CACCACCAAGAACCGCCAT 60.603 57.895 0.00 0.00 0.00 4.40
674 728 2.203280 CACCACCAAGAACCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
675 729 2.983592 CCACCACCAAGAACCGCC 60.984 66.667 0.00 0.00 0.00 6.13
676 730 1.388837 AAACCACCACCAAGAACCGC 61.389 55.000 0.00 0.00 0.00 5.68
677 731 1.107945 AAAACCACCACCAAGAACCG 58.892 50.000 0.00 0.00 0.00 4.44
678 732 2.035449 GCTAAAACCACCACCAAGAACC 59.965 50.000 0.00 0.00 0.00 3.62
679 733 2.035449 GGCTAAAACCACCACCAAGAAC 59.965 50.000 0.00 0.00 0.00 3.01
680 734 2.312390 GGCTAAAACCACCACCAAGAA 58.688 47.619 0.00 0.00 0.00 2.52
681 735 1.816183 CGGCTAAAACCACCACCAAGA 60.816 52.381 0.00 0.00 0.00 3.02
682 736 0.596082 CGGCTAAAACCACCACCAAG 59.404 55.000 0.00 0.00 0.00 3.61
683 737 0.824182 CCGGCTAAAACCACCACCAA 60.824 55.000 0.00 0.00 0.00 3.67
684 738 1.228306 CCGGCTAAAACCACCACCA 60.228 57.895 0.00 0.00 0.00 4.17
685 739 0.824595 AACCGGCTAAAACCACCACC 60.825 55.000 0.00 0.00 0.00 4.61
686 740 1.034356 AAACCGGCTAAAACCACCAC 58.966 50.000 0.00 0.00 0.00 4.16
687 741 1.777941 AAAACCGGCTAAAACCACCA 58.222 45.000 0.00 0.00 0.00 4.17
688 742 2.894763 AAAAACCGGCTAAAACCACC 57.105 45.000 0.00 0.00 0.00 4.61
714 768 4.458642 TCAACGGCTGATTCAATTCAATCA 59.541 37.500 4.59 4.59 39.91 2.57
715 769 4.985413 TCAACGGCTGATTCAATTCAATC 58.015 39.130 0.00 0.00 33.90 2.67
716 770 5.105635 ACATCAACGGCTGATTCAATTCAAT 60.106 36.000 0.00 0.00 42.46 2.57
717 771 4.218200 ACATCAACGGCTGATTCAATTCAA 59.782 37.500 0.00 0.00 42.46 2.69
718 772 3.758023 ACATCAACGGCTGATTCAATTCA 59.242 39.130 0.00 0.00 42.46 2.57
719 773 4.346129 GACATCAACGGCTGATTCAATTC 58.654 43.478 0.00 0.00 42.46 2.17
720 774 3.129287 GGACATCAACGGCTGATTCAATT 59.871 43.478 0.00 0.00 42.46 2.32
721 775 2.684881 GGACATCAACGGCTGATTCAAT 59.315 45.455 0.00 0.00 42.46 2.57
722 776 2.083774 GGACATCAACGGCTGATTCAA 58.916 47.619 0.00 0.00 42.46 2.69
723 777 1.678728 GGGACATCAACGGCTGATTCA 60.679 52.381 0.00 0.00 42.46 2.57
727 781 2.107041 AACGGGACATCAACGGCTGA 62.107 55.000 0.00 0.00 38.81 4.26
735 789 3.399330 GAGTGAGAAAAACGGGACATCA 58.601 45.455 0.00 0.00 0.00 3.07
743 797 1.866925 GCGGGGAGTGAGAAAAACG 59.133 57.895 0.00 0.00 0.00 3.60
744 798 0.883370 ACGCGGGGAGTGAGAAAAAC 60.883 55.000 12.47 0.00 0.00 2.43
750 804 2.752238 AGAGACGCGGGGAGTGAG 60.752 66.667 12.47 0.00 0.00 3.51
753 807 4.049817 AGGAGAGACGCGGGGAGT 62.050 66.667 12.47 0.00 0.00 3.85
1215 1271 3.494378 TCGAAGACGTAGAGCGGG 58.506 61.111 0.00 0.00 46.52 6.13
1288 1344 3.081409 CCTCAACCCCGTCCCGAT 61.081 66.667 0.00 0.00 0.00 4.18
1509 1566 5.534654 TGACAGTTCAATTTTACAAGGGAGG 59.465 40.000 0.00 0.00 0.00 4.30
1583 1640 8.129211 GTCCATTTAATAGTGTCTATGGCAAAC 58.871 37.037 0.00 0.00 34.05 2.93
1620 1677 7.307989 GCAATAATAGCGATGTGGTACAAAGAT 60.308 37.037 0.00 0.00 44.16 2.40
1638 1695 6.070824 TCACACTGTCCTGAGAAGCAATAATA 60.071 38.462 0.00 0.00 0.00 0.98
1642 1699 2.369860 TCACACTGTCCTGAGAAGCAAT 59.630 45.455 0.00 0.00 0.00 3.56
1742 1800 0.773644 ACAGCACCCAGGTCTCATTT 59.226 50.000 0.00 0.00 0.00 2.32
1751 1809 2.993899 CGACTTAGTTTACAGCACCCAG 59.006 50.000 0.00 0.00 0.00 4.45
1772 1830 2.605366 GAGAAGCAGAAACAGTATCGGC 59.395 50.000 0.00 0.00 38.13 5.54
1843 1908 8.740906 TGTTGTTAAACCATGTTTTAGACAAGA 58.259 29.630 16.25 14.14 37.36 3.02
1909 1974 3.960755 AGGAAAACTGCCTGCTAAAAAGT 59.039 39.130 0.00 0.00 33.59 2.66
1910 1975 4.301628 CAGGAAAACTGCCTGCTAAAAAG 58.698 43.478 0.00 0.00 45.66 2.27
1935 2000 9.614792 ACTGTCTAAATGTTTCTGAAACTAAGT 57.385 29.630 27.75 17.33 41.90 2.24
1946 2012 8.128582 TGTGAATGTCAACTGTCTAAATGTTTC 58.871 33.333 0.00 0.00 0.00 2.78
2123 2189 2.874701 GCATAGCGACCTCATTTGTGAT 59.125 45.455 0.00 0.00 0.00 3.06
2126 2192 2.401583 TGCATAGCGACCTCATTTGT 57.598 45.000 0.00 0.00 0.00 2.83
2487 2554 2.880268 TGATGTTGACAGTTGCCTCAAG 59.120 45.455 0.00 0.00 0.00 3.02
2653 2720 7.394016 TGTTGTAATATCTGAATGGACACACT 58.606 34.615 0.00 0.00 0.00 3.55
2795 2862 0.677731 TCTGAATGAGGGCGGCTTTG 60.678 55.000 9.56 0.00 0.00 2.77
2892 2959 1.566231 ACCTGCTATTTTCCTCCCTGG 59.434 52.381 0.00 0.00 37.10 4.45
2960 3027 5.996513 AGCATCTAAAGCATCCAGAGTAATG 59.003 40.000 0.00 0.00 0.00 1.90
3090 3157 7.449247 ACAACCACAATAATAATGTTGGCTTT 58.551 30.769 0.00 0.00 37.87 3.51
3133 3225 1.935799 TTCATTGGGAATGGGTGGTG 58.064 50.000 0.00 0.00 39.38 4.17
3135 3227 1.204467 CGTTTCATTGGGAATGGGTGG 59.796 52.381 0.00 0.00 39.38 4.61
3154 3246 6.787085 ATAAGAGGTTGAAACAAGAAGTCG 57.213 37.500 0.00 0.00 0.00 4.18
3208 3300 7.988737 TGTTGTCAGAAATGGATAATGATGAC 58.011 34.615 0.00 0.00 37.05 3.06
3447 3539 5.858381 TCCAATGAACAGATAGCATCTACC 58.142 41.667 0.00 0.00 37.58 3.18
3514 3606 2.027653 GGGAGTCCAGAAGAGGTGAAAG 60.028 54.545 12.30 0.00 0.00 2.62
3790 3882 7.539022 GTCGTGATACATACATGGATAAGAGTG 59.461 40.741 0.00 0.00 29.60 3.51
3847 3939 2.230660 GTAATACTCCCATGCTTGGCC 58.769 52.381 13.15 0.00 42.15 5.36
3868 3960 5.495926 TGTTGCCCACCAAAATGAATAAT 57.504 34.783 0.00 0.00 34.68 1.28
3873 3965 6.611613 TTTATATGTTGCCCACCAAAATGA 57.388 33.333 0.00 0.00 33.43 2.57
3877 3969 5.087323 TCCTTTTATATGTTGCCCACCAAA 58.913 37.500 0.00 0.00 34.68 3.28
3921 4013 3.655276 CAAGGATTGCTGCTTTTCACT 57.345 42.857 0.00 0.00 40.39 3.41
3959 4051 2.297033 CCCCCAGTTGTTGTCTGATTTG 59.703 50.000 0.00 0.00 35.20 2.32
4053 4145 5.830799 ATATAGATCATGGTGAGTTGCCA 57.169 39.130 0.00 0.00 40.68 4.92
4056 4148 9.933723 TGATTGTATATAGATCATGGTGAGTTG 57.066 33.333 0.00 0.00 0.00 3.16
4113 4207 9.145865 CCGTTTATAAAGTAAAATTGGCAATGT 57.854 29.630 14.47 5.01 0.00 2.71
4414 4518 3.012518 ACACCATGAGACAAGCTTATGC 58.987 45.455 0.00 0.00 38.81 3.14
4460 4565 4.464244 TGTTCATCGGAGATAGGATCATCC 59.536 45.833 0.00 0.00 45.12 3.51
4847 4959 5.305585 TCAACAATGAAGTCCCTCAGTAAC 58.694 41.667 0.00 0.00 30.99 2.50
5197 5309 9.634021 TTTGACCCATAAATATTGTACAGCATA 57.366 29.630 0.00 0.00 0.00 3.14
5395 5509 7.548075 ACCAAACAATATTACCGAGTTCTAGTG 59.452 37.037 0.00 0.00 0.00 2.74
5675 5798 5.618640 GCAGCTCAGATGTTAAAAAGTCCAG 60.619 44.000 0.00 0.00 0.00 3.86
5724 5847 8.625786 TCCTGTACGTAGTTGCATATAATAGA 57.374 34.615 0.00 0.00 37.78 1.98
5815 5938 2.568546 TCCCTTGAGAATGCCTCCTA 57.431 50.000 0.00 0.00 41.25 2.94
5882 6005 5.221661 GGAACGGAGGGAGTATGTGAATATT 60.222 44.000 0.00 0.00 0.00 1.28
5892 6015 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5893 6016 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5894 6017 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5895 6018 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5896 6019 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5897 6020 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5898 6021 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5899 6022 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5900 6023 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5901 6024 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5902 6025 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5903 6026 7.947890 ACTAAAGTTGGGTCATCTATTTTGGAA 59.052 33.333 0.00 0.00 0.00 3.53
5904 6027 7.466804 ACTAAAGTTGGGTCATCTATTTTGGA 58.533 34.615 0.00 0.00 0.00 3.53
5905 6028 7.703058 ACTAAAGTTGGGTCATCTATTTTGG 57.297 36.000 0.00 0.00 0.00 3.28
5906 6029 9.226606 TGTACTAAAGTTGGGTCATCTATTTTG 57.773 33.333 0.00 0.00 0.00 2.44
5907 6030 9.802039 TTGTACTAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5908 6031 9.802039 TTTGTACTAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
5909 6032 9.449719 CTTTGTACTAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
5910 6033 8.603304 ACTTTGTACTAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
5911 6034 7.970102 ACTTTGTACTAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
5912 6035 6.838382 ACTTTGTACTAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
5913 6036 7.506328 AACTTTGTACTAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
5922 6045 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
5923 6046 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
5924 6047 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
5925 6048 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5926 6049 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5927 6050 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5928 6051 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5929 6052 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5930 6053 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5931 6054 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5932 6055 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5933 6056 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5934 6057 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5935 6058 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5936 6059 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5937 6060 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5938 6061 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5939 6062 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5940 6063 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5941 6064 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5942 6065 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5943 6066 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5944 6067 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5945 6068 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5946 6069 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5947 6070 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5948 6071 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5949 6072 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5950 6073 2.450476 GTACTACTCCCTCCGTTCCAA 58.550 52.381 0.00 0.00 0.00 3.53
5951 6074 1.341383 GGTACTACTCCCTCCGTTCCA 60.341 57.143 0.00 0.00 0.00 3.53
5952 6075 1.064091 AGGTACTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 36.02 3.62
5953 6076 2.433662 AGGTACTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 36.02 3.95
6153 6276 1.486310 GCACCAGGGTCATATGACTGA 59.514 52.381 29.87 0.00 44.20 3.41
6488 6613 4.591072 CGAAATAGAGAGGAGAGGGGAAAT 59.409 45.833 0.00 0.00 0.00 2.17
6680 6808 0.834687 ACAGCCTGACGGAAAGGGTA 60.835 55.000 0.00 0.00 43.65 3.69
6719 6847 6.100004 GTGTTATCAAATGTCTCCGAGAAGA 58.900 40.000 0.00 0.00 0.00 2.87
6722 6850 5.400066 TGTGTTATCAAATGTCTCCGAGA 57.600 39.130 0.00 0.00 0.00 4.04
6723 6851 5.582269 ACATGTGTTATCAAATGTCTCCGAG 59.418 40.000 0.00 0.00 46.08 4.63
6785 6913 8.228206 ACCTAAGAGATAACCATATCTGTGAGA 58.772 37.037 8.31 0.00 46.56 3.27
6802 6930 5.507482 CGTGTTCTTTCTGTCACCTAAGAGA 60.507 44.000 0.00 0.00 0.00 3.10
6816 6944 5.344207 ACATTAGCAACTCGTGTTCTTTC 57.656 39.130 0.00 0.00 33.52 2.62
6825 6953 5.839262 TTCTGTACAACATTAGCAACTCG 57.161 39.130 0.00 0.00 0.00 4.18
6952 7080 2.927477 CAAATTGCATGTCACATCCTGC 59.073 45.455 0.00 0.00 35.21 4.85
7264 7476 8.862325 ATGGTTCAGTGAAGTAATTACAATCA 57.138 30.769 17.65 16.68 0.00 2.57
7326 7538 4.663636 AAGAAAAACACTAGCCGATTCG 57.336 40.909 0.00 0.00 0.00 3.34
7475 7687 8.116651 TGATATGATTCCTTGAGTAGTAGCTC 57.883 38.462 0.00 0.00 36.12 4.09
7536 7748 8.064814 ACAACAACAACAACAACAACAATAAAC 58.935 29.630 0.00 0.00 0.00 2.01
7545 7757 9.424319 ACAATAATAACAACAACAACAACAACA 57.576 25.926 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.