Multiple sequence alignment - TraesCS5D01G325800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G325800 chr5D 100.000 5570 0 0 1 5570 418075612 418070043 0.000000e+00 10286.0
1 TraesCS5D01G325800 chr5D 73.757 503 122 10 4 500 509959288 509958790 7.370000e-44 189.0
2 TraesCS5D01G325800 chr5D 75.931 403 58 20 5163 5532 417620433 417620037 2.670000e-38 171.0
3 TraesCS5D01G325800 chr5D 91.803 61 3 2 1839 1899 420934028 420933970 3.580000e-12 84.2
4 TraesCS5D01G325800 chr5B 97.436 3471 72 7 1898 5355 505484693 505481227 0.000000e+00 5901.0
5 TraesCS5D01G325800 chr5B 93.297 1283 62 13 565 1825 505485969 505484689 0.000000e+00 1871.0
6 TraesCS5D01G325800 chr5B 91.720 471 35 4 1 468 505486462 505485993 0.000000e+00 651.0
7 TraesCS5D01G325800 chr5B 87.738 473 45 6 930 1400 324259799 324260260 1.770000e-149 540.0
8 TraesCS5D01G325800 chr5B 91.603 262 15 4 5310 5570 505481227 505480972 6.860000e-94 355.0
9 TraesCS5D01G325800 chr5B 74.102 529 84 30 5039 5532 504810519 504810009 9.600000e-38 169.0
10 TraesCS5D01G325800 chr5B 95.455 66 2 1 1835 1900 478675876 478675940 2.740000e-18 104.0
11 TraesCS5D01G325800 chr5A 97.604 3047 49 9 1898 4932 533023490 533020456 0.000000e+00 5201.0
12 TraesCS5D01G325800 chr5A 90.980 1286 79 17 565 1825 533024759 533023486 0.000000e+00 1698.0
13 TraesCS5D01G325800 chr5A 92.007 613 31 8 4968 5570 533020460 533019856 0.000000e+00 845.0
14 TraesCS5D01G325800 chr5A 90.928 474 39 4 1 473 533025420 533024950 7.870000e-178 634.0
15 TraesCS5D01G325800 chr4A 73.932 468 109 12 23 483 675140122 675139661 5.730000e-40 176.0
16 TraesCS5D01G325800 chr4A 73.932 468 109 12 23 483 675162102 675161641 5.730000e-40 176.0
17 TraesCS5D01G325800 chr1A 72.332 506 122 17 4 500 339494207 339494703 5.820000e-30 143.0
18 TraesCS5D01G325800 chr3B 94.203 69 2 2 1837 1904 672075534 672075601 2.740000e-18 104.0
19 TraesCS5D01G325800 chr3B 90.909 66 5 1 1835 1900 64244398 64244462 2.760000e-13 87.9
20 TraesCS5D01G325800 chr2B 94.737 57 3 0 1843 1899 174395621 174395565 7.690000e-14 89.8
21 TraesCS5D01G325800 chr2D 90.909 66 5 1 1835 1900 473093762 473093698 2.760000e-13 87.9
22 TraesCS5D01G325800 chr1D 89.706 68 6 1 1837 1904 419209534 419209600 9.940000e-13 86.1
23 TraesCS5D01G325800 chr1B 90.769 65 5 1 1835 1899 24494229 24494292 9.940000e-13 86.1
24 TraesCS5D01G325800 chr7B 92.982 57 4 0 1843 1899 696902875 696902819 3.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G325800 chr5D 418070043 418075612 5569 True 10286.0 10286 100.00000 1 5570 1 chr5D.!!$R2 5569
1 TraesCS5D01G325800 chr5B 505480972 505486462 5490 True 2194.5 5901 93.51400 1 5570 4 chr5B.!!$R2 5569
2 TraesCS5D01G325800 chr5A 533019856 533025420 5564 True 2094.5 5201 92.87975 1 5570 4 chr5A.!!$R1 5569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 412 0.035739 TCGGTACTTGGAGCAAACCC 59.964 55.000 0.00 0.0 0.00 4.11 F
560 727 0.184933 AGCACCTGGTTACCTGCAAA 59.815 50.000 14.96 0.0 31.71 3.68 F
611 778 0.537143 TGCACCCCACACTGATGAAC 60.537 55.000 0.00 0.0 0.00 3.18 F
1652 1848 1.079127 TGCTGTTAGGAGAAGCCGC 60.079 57.895 0.00 0.0 43.43 6.53 F
1833 2030 1.104630 AGCTGTTACTACCTCCGCTC 58.895 55.000 0.00 0.0 0.00 5.03 F
1834 2031 1.104630 GCTGTTACTACCTCCGCTCT 58.895 55.000 0.00 0.0 0.00 4.09 F
1835 2032 2.092538 AGCTGTTACTACCTCCGCTCTA 60.093 50.000 0.00 0.0 0.00 2.43 F
3095 3298 0.907486 AGGCTACTGCAGATGCTGAA 59.093 50.000 23.35 0.0 41.71 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1811 0.692476 ACAGCAGCATCCAACCTACA 59.308 50.000 0.0 0.0 0.00 2.74 R
1821 2018 3.014304 TGTCATTAGAGCGGAGGTAGT 57.986 47.619 0.0 0.0 39.88 2.73 R
1825 2022 3.313526 CCAAAATGTCATTAGAGCGGAGG 59.686 47.826 0.0 0.0 0.00 4.30 R
2813 3016 3.448686 CGCTTCATCATCTTTCCGTACT 58.551 45.455 0.0 0.0 0.00 2.73 R
2870 3073 3.604582 GACAGCAGAATCTACAGCCTTT 58.395 45.455 0.0 0.0 0.00 3.11 R
3095 3298 3.972227 GCACACCTGCGATGAAGT 58.028 55.556 0.0 0.0 32.44 3.01 R
4171 4384 4.091549 TGTGGTAGATCCCGGTAATATCC 58.908 47.826 0.0 0.0 34.77 2.59 R
4808 5021 0.450482 CGCGTTCAACAGGTTTAGCG 60.450 55.000 0.0 0.0 40.37 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.996793 TCCTTGAATCTCAAACCATCCAA 58.003 39.130 0.00 0.00 35.73 3.53
134 135 3.470709 CTGTCGATGGCCATCTTTACAT 58.529 45.455 36.51 7.61 35.72 2.29
135 136 3.466836 TGTCGATGGCCATCTTTACATC 58.533 45.455 36.51 20.51 37.08 3.06
176 177 6.579666 ATCAACATGTTTAAGTGCTCACAT 57.420 33.333 8.77 0.00 0.00 3.21
187 188 2.245028 AGTGCTCACATAGACCCCTAGA 59.755 50.000 2.63 0.00 0.00 2.43
217 218 2.373169 AGCAGGACATGGAAAAGACTGA 59.627 45.455 0.00 0.00 0.00 3.41
222 223 2.480419 GACATGGAAAAGACTGACACCG 59.520 50.000 0.00 0.00 0.00 4.94
224 225 0.534203 TGGAAAAGACTGACACCGCC 60.534 55.000 0.00 0.00 0.00 6.13
243 244 3.642938 TGCGCCACAGATTTAACCT 57.357 47.368 4.18 0.00 0.00 3.50
310 313 6.757897 TGAATTTTGCTCCATAAACGATCT 57.242 33.333 0.00 0.00 0.00 2.75
377 381 7.806487 CGATGTCATTCCCAAATATTTCTCATG 59.194 37.037 0.00 0.00 0.00 3.07
390 394 3.878086 TTCTCATGCAGTGTTTCGTTC 57.122 42.857 0.00 0.00 0.00 3.95
408 412 0.035739 TCGGTACTTGGAGCAAACCC 59.964 55.000 0.00 0.00 0.00 4.11
487 654 2.364632 CATAGTTGATTCGTTGCCCCA 58.635 47.619 0.00 0.00 0.00 4.96
500 667 1.314534 TGCCCCATCGCTTGACAATG 61.315 55.000 0.00 0.00 0.00 2.82
507 674 4.758674 CCCATCGCTTGACAATGAATATCT 59.241 41.667 0.00 0.00 0.00 1.98
508 675 5.934043 CCCATCGCTTGACAATGAATATCTA 59.066 40.000 0.00 0.00 0.00 1.98
509 676 6.091849 CCCATCGCTTGACAATGAATATCTAG 59.908 42.308 0.00 0.00 0.00 2.43
510 677 6.401903 CCATCGCTTGACAATGAATATCTAGC 60.402 42.308 0.00 0.00 37.70 3.42
511 678 5.600696 TCGCTTGACAATGAATATCTAGCA 58.399 37.500 7.48 0.00 40.01 3.49
512 679 5.463392 TCGCTTGACAATGAATATCTAGCAC 59.537 40.000 7.48 0.00 40.01 4.40
513 680 5.333645 CGCTTGACAATGAATATCTAGCACC 60.334 44.000 7.48 0.00 40.01 5.01
514 681 5.762218 GCTTGACAATGAATATCTAGCACCT 59.238 40.000 0.00 0.00 39.85 4.00
515 682 6.261826 GCTTGACAATGAATATCTAGCACCTT 59.738 38.462 0.00 0.00 39.85 3.50
516 683 7.201767 GCTTGACAATGAATATCTAGCACCTTT 60.202 37.037 0.00 0.00 39.85 3.11
517 684 8.579850 TTGACAATGAATATCTAGCACCTTTT 57.420 30.769 0.00 0.00 0.00 2.27
518 685 7.988737 TGACAATGAATATCTAGCACCTTTTG 58.011 34.615 0.00 0.00 0.00 2.44
519 686 7.611467 TGACAATGAATATCTAGCACCTTTTGT 59.389 33.333 0.00 0.00 0.00 2.83
520 687 8.353423 ACAATGAATATCTAGCACCTTTTGTT 57.647 30.769 0.00 0.00 0.00 2.83
521 688 8.806146 ACAATGAATATCTAGCACCTTTTGTTT 58.194 29.630 0.00 0.00 0.00 2.83
522 689 9.643693 CAATGAATATCTAGCACCTTTTGTTTT 57.356 29.630 0.00 0.00 0.00 2.43
524 691 9.643693 ATGAATATCTAGCACCTTTTGTTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
525 692 8.855110 TGAATATCTAGCACCTTTTGTTTTTGA 58.145 29.630 0.00 0.00 0.00 2.69
526 693 9.346725 GAATATCTAGCACCTTTTGTTTTTGAG 57.653 33.333 0.00 0.00 0.00 3.02
527 694 6.959639 ATCTAGCACCTTTTGTTTTTGAGA 57.040 33.333 0.00 0.00 0.00 3.27
528 695 6.767524 TCTAGCACCTTTTGTTTTTGAGAA 57.232 33.333 0.00 0.00 0.00 2.87
529 696 7.164230 TCTAGCACCTTTTGTTTTTGAGAAA 57.836 32.000 0.00 0.00 0.00 2.52
530 697 7.033185 TCTAGCACCTTTTGTTTTTGAGAAAC 58.967 34.615 0.00 0.00 0.00 2.78
531 698 5.546526 AGCACCTTTTGTTTTTGAGAAACA 58.453 33.333 0.00 0.00 38.26 2.83
532 699 6.172630 AGCACCTTTTGTTTTTGAGAAACAT 58.827 32.000 1.98 0.00 39.56 2.71
533 700 6.092533 AGCACCTTTTGTTTTTGAGAAACATG 59.907 34.615 1.98 0.00 39.56 3.21
534 701 6.091986 GCACCTTTTGTTTTTGAGAAACATGA 59.908 34.615 0.00 0.00 39.56 3.07
535 702 7.360776 GCACCTTTTGTTTTTGAGAAACATGAA 60.361 33.333 0.00 1.11 39.56 2.57
536 703 8.667463 CACCTTTTGTTTTTGAGAAACATGAAT 58.333 29.630 0.00 0.00 39.56 2.57
537 704 9.883142 ACCTTTTGTTTTTGAGAAACATGAATA 57.117 25.926 0.00 0.00 39.56 1.75
546 713 7.792374 TTGAGAAACATGAATATCTAGCACC 57.208 36.000 0.00 0.00 0.00 5.01
547 714 7.129457 TGAGAAACATGAATATCTAGCACCT 57.871 36.000 0.00 0.00 0.00 4.00
548 715 6.988580 TGAGAAACATGAATATCTAGCACCTG 59.011 38.462 0.00 0.00 0.00 4.00
549 716 6.294473 AGAAACATGAATATCTAGCACCTGG 58.706 40.000 0.00 0.00 0.00 4.45
550 717 5.636903 AACATGAATATCTAGCACCTGGT 57.363 39.130 0.00 0.00 0.00 4.00
551 718 5.636903 ACATGAATATCTAGCACCTGGTT 57.363 39.130 0.00 0.00 0.00 3.67
552 719 6.747414 ACATGAATATCTAGCACCTGGTTA 57.253 37.500 0.00 0.00 0.00 2.85
553 720 6.525629 ACATGAATATCTAGCACCTGGTTAC 58.474 40.000 0.00 0.00 0.00 2.50
554 721 5.546621 TGAATATCTAGCACCTGGTTACC 57.453 43.478 0.00 0.00 0.00 2.85
555 722 5.216622 TGAATATCTAGCACCTGGTTACCT 58.783 41.667 2.07 0.00 0.00 3.08
556 723 5.070446 TGAATATCTAGCACCTGGTTACCTG 59.930 44.000 2.07 1.48 0.00 4.00
557 724 0.902531 TCTAGCACCTGGTTACCTGC 59.097 55.000 2.07 4.36 0.00 4.85
558 725 0.613260 CTAGCACCTGGTTACCTGCA 59.387 55.000 14.96 0.00 31.71 4.41
559 726 1.003118 CTAGCACCTGGTTACCTGCAA 59.997 52.381 14.96 0.00 31.71 4.08
560 727 0.184933 AGCACCTGGTTACCTGCAAA 59.815 50.000 14.96 0.00 31.71 3.68
561 728 1.036707 GCACCTGGTTACCTGCAAAA 58.963 50.000 8.90 0.00 0.00 2.44
562 729 1.410882 GCACCTGGTTACCTGCAAAAA 59.589 47.619 8.90 0.00 0.00 1.94
588 755 1.729586 TCTAGCACCTGGTTGACCTT 58.270 50.000 0.00 0.00 36.82 3.50
596 763 2.890945 ACCTGGTTGACCTTATTTGCAC 59.109 45.455 0.00 0.00 36.82 4.57
606 773 2.513753 CTTATTTGCACCCCACACTGA 58.486 47.619 0.00 0.00 0.00 3.41
611 778 0.537143 TGCACCCCACACTGATGAAC 60.537 55.000 0.00 0.00 0.00 3.18
716 883 1.752501 CGTGGGCTTCGATTGCGTAG 61.753 60.000 5.11 0.00 37.88 3.51
718 885 1.153429 GGGCTTCGATTGCGTAGGT 60.153 57.895 5.11 0.00 35.73 3.08
723 890 1.860950 CTTCGATTGCGTAGGTCCATG 59.139 52.381 0.00 0.00 38.98 3.66
725 892 1.478916 TCGATTGCGTAGGTCCATGAA 59.521 47.619 0.00 0.00 38.98 2.57
752 919 3.816090 AACCAACCGGCCCACACT 61.816 61.111 0.00 0.00 34.57 3.55
776 943 2.103538 GTGGGCTTCGATCGCGTA 59.896 61.111 11.09 0.00 38.98 4.42
830 999 2.881441 GCGATACGCGATCTTTCCA 58.119 52.632 15.93 0.00 44.55 3.53
870 1039 2.983791 GGCTAACCCACGCCACTA 59.016 61.111 0.00 0.00 45.59 2.74
1217 1407 6.318900 ACTTTTGTTAGAGAAACCACTTCCTG 59.681 38.462 0.00 0.00 37.27 3.86
1278 1468 2.508663 GTCCCGTTGCGTCTAGGC 60.509 66.667 0.00 0.00 0.00 3.93
1286 1476 2.167398 TTGCGTCTAGGCTGGTCCAC 62.167 60.000 0.00 0.00 37.29 4.02
1386 1577 3.866910 GTCCGCCGTGTAGATTTGATTTA 59.133 43.478 0.00 0.00 0.00 1.40
1515 1706 6.812879 AAAACCAAAAGGTAATAGACGGAG 57.187 37.500 0.00 0.00 0.00 4.63
1581 1772 7.677892 TGATTCAAGAGATCTGGATATCCTTG 58.322 38.462 22.35 15.49 36.51 3.61
1614 1805 4.082125 CTCTCTTGGTGCCAGGTTTTATT 58.918 43.478 0.28 0.00 0.00 1.40
1620 1811 5.559148 TGGTGCCAGGTTTTATTTCAATT 57.441 34.783 0.00 0.00 0.00 2.32
1652 1848 1.079127 TGCTGTTAGGAGAAGCCGC 60.079 57.895 0.00 0.00 43.43 6.53
1780 1976 5.264060 TCGAGTTGTCTTTTGCTTTATCG 57.736 39.130 0.00 0.00 0.00 2.92
1799 1995 3.993920 TCGTCGGCTAAAACCTTACTTT 58.006 40.909 0.00 0.00 0.00 2.66
1827 2024 7.868906 TTTTTGTTGTTAGCTGTTACTACCT 57.131 32.000 0.00 0.00 0.00 3.08
1828 2025 7.486802 TTTTGTTGTTAGCTGTTACTACCTC 57.513 36.000 0.00 0.00 0.00 3.85
1829 2026 5.143376 TGTTGTTAGCTGTTACTACCTCC 57.857 43.478 0.00 0.00 0.00 4.30
1830 2027 4.171754 GTTGTTAGCTGTTACTACCTCCG 58.828 47.826 0.00 0.00 0.00 4.63
1831 2028 2.165030 TGTTAGCTGTTACTACCTCCGC 59.835 50.000 0.00 0.00 0.00 5.54
1832 2029 2.426381 GTTAGCTGTTACTACCTCCGCT 59.574 50.000 0.00 0.00 0.00 5.52
1833 2030 1.104630 AGCTGTTACTACCTCCGCTC 58.895 55.000 0.00 0.00 0.00 5.03
1834 2031 1.104630 GCTGTTACTACCTCCGCTCT 58.895 55.000 0.00 0.00 0.00 4.09
1835 2032 2.092538 AGCTGTTACTACCTCCGCTCTA 60.093 50.000 0.00 0.00 0.00 2.43
1836 2033 2.686915 GCTGTTACTACCTCCGCTCTAA 59.313 50.000 0.00 0.00 0.00 2.10
1837 2034 3.318557 GCTGTTACTACCTCCGCTCTAAT 59.681 47.826 0.00 0.00 0.00 1.73
1838 2035 4.793353 GCTGTTACTACCTCCGCTCTAATG 60.793 50.000 0.00 0.00 0.00 1.90
1839 2036 4.529897 TGTTACTACCTCCGCTCTAATGA 58.470 43.478 0.00 0.00 0.00 2.57
1840 2037 4.337555 TGTTACTACCTCCGCTCTAATGAC 59.662 45.833 0.00 0.00 0.00 3.06
1841 2038 3.014304 ACTACCTCCGCTCTAATGACA 57.986 47.619 0.00 0.00 0.00 3.58
1842 2039 3.567397 ACTACCTCCGCTCTAATGACAT 58.433 45.455 0.00 0.00 0.00 3.06
1843 2040 3.961408 ACTACCTCCGCTCTAATGACATT 59.039 43.478 5.87 5.87 0.00 2.71
1844 2041 3.914426 ACCTCCGCTCTAATGACATTT 57.086 42.857 5.89 0.00 0.00 2.32
1845 2042 4.222124 ACCTCCGCTCTAATGACATTTT 57.778 40.909 5.89 0.00 0.00 1.82
1846 2043 3.941483 ACCTCCGCTCTAATGACATTTTG 59.059 43.478 5.89 0.57 0.00 2.44
1847 2044 3.313526 CCTCCGCTCTAATGACATTTTGG 59.686 47.826 5.89 2.31 0.00 3.28
1848 2045 3.941483 CTCCGCTCTAATGACATTTTGGT 59.059 43.478 5.89 0.00 0.00 3.67
1849 2046 5.092554 TCCGCTCTAATGACATTTTGGTA 57.907 39.130 5.89 0.00 0.00 3.25
1850 2047 5.116180 TCCGCTCTAATGACATTTTGGTAG 58.884 41.667 5.89 0.00 0.00 3.18
1851 2048 4.273480 CCGCTCTAATGACATTTTGGTAGG 59.727 45.833 5.89 0.60 0.00 3.18
1852 2049 4.260784 CGCTCTAATGACATTTTGGTAGGC 60.261 45.833 5.89 2.96 0.00 3.93
1853 2050 4.884164 GCTCTAATGACATTTTGGTAGGCT 59.116 41.667 5.89 0.00 0.00 4.58
1854 2051 6.055588 GCTCTAATGACATTTTGGTAGGCTA 58.944 40.000 5.89 0.00 0.00 3.93
1855 2052 6.203723 GCTCTAATGACATTTTGGTAGGCTAG 59.796 42.308 5.89 0.00 0.00 3.42
1856 2053 7.195374 TCTAATGACATTTTGGTAGGCTAGT 57.805 36.000 5.89 0.00 0.00 2.57
1857 2054 7.630082 TCTAATGACATTTTGGTAGGCTAGTT 58.370 34.615 5.89 0.00 0.00 2.24
1858 2055 8.107095 TCTAATGACATTTTGGTAGGCTAGTTT 58.893 33.333 5.89 0.00 0.00 2.66
1859 2056 9.391006 CTAATGACATTTTGGTAGGCTAGTTTA 57.609 33.333 5.89 0.00 0.00 2.01
1860 2057 7.865706 ATGACATTTTGGTAGGCTAGTTTAG 57.134 36.000 0.00 0.00 0.00 1.85
1872 2069 4.595198 GCTAGTTTAGCCTACCAAAACG 57.405 45.455 0.00 0.00 45.95 3.60
1873 2070 3.999001 GCTAGTTTAGCCTACCAAAACGT 59.001 43.478 0.00 0.00 45.95 3.99
1874 2071 4.092529 GCTAGTTTAGCCTACCAAAACGTC 59.907 45.833 0.00 0.00 45.95 4.34
1875 2072 4.075963 AGTTTAGCCTACCAAAACGTCA 57.924 40.909 0.00 0.00 37.99 4.35
1876 2073 4.648651 AGTTTAGCCTACCAAAACGTCAT 58.351 39.130 0.00 0.00 37.99 3.06
1877 2074 5.797051 AGTTTAGCCTACCAAAACGTCATA 58.203 37.500 0.00 0.00 37.99 2.15
1878 2075 6.412214 AGTTTAGCCTACCAAAACGTCATAT 58.588 36.000 0.00 0.00 37.99 1.78
1879 2076 7.558604 AGTTTAGCCTACCAAAACGTCATATA 58.441 34.615 0.00 0.00 37.99 0.86
1880 2077 8.208903 AGTTTAGCCTACCAAAACGTCATATAT 58.791 33.333 0.00 0.00 37.99 0.86
1881 2078 8.833493 GTTTAGCCTACCAAAACGTCATATATT 58.167 33.333 0.00 0.00 0.00 1.28
1882 2079 8.967664 TTAGCCTACCAAAACGTCATATATTT 57.032 30.769 0.00 0.00 0.00 1.40
1883 2080 7.875327 AGCCTACCAAAACGTCATATATTTT 57.125 32.000 0.00 0.00 0.00 1.82
1884 2081 8.967664 AGCCTACCAAAACGTCATATATTTTA 57.032 30.769 0.00 0.00 0.00 1.52
1885 2082 9.052759 AGCCTACCAAAACGTCATATATTTTAG 57.947 33.333 0.00 0.00 0.00 1.85
1886 2083 9.048446 GCCTACCAAAACGTCATATATTTTAGA 57.952 33.333 0.00 0.00 0.00 2.10
1890 2087 8.392612 ACCAAAACGTCATATATTTTAGAACGG 58.607 33.333 0.00 0.00 0.00 4.44
1891 2088 8.605746 CCAAAACGTCATATATTTTAGAACGGA 58.394 33.333 0.00 0.00 0.00 4.69
1892 2089 9.632969 CAAAACGTCATATATTTTAGAACGGAG 57.367 33.333 0.00 0.00 0.00 4.63
1893 2090 7.941795 AACGTCATATATTTTAGAACGGAGG 57.058 36.000 0.00 0.00 0.00 4.30
1894 2091 7.047460 ACGTCATATATTTTAGAACGGAGGT 57.953 36.000 0.00 0.00 0.00 3.85
1895 2092 8.169977 ACGTCATATATTTTAGAACGGAGGTA 57.830 34.615 0.00 0.00 0.00 3.08
1896 2093 8.295288 ACGTCATATATTTTAGAACGGAGGTAG 58.705 37.037 0.00 0.00 0.00 3.18
1897 2094 8.295288 CGTCATATATTTTAGAACGGAGGTAGT 58.705 37.037 0.00 0.00 0.00 2.73
1900 2097 9.570488 CATATATTTTAGAACGGAGGTAGTAGC 57.430 37.037 0.00 0.00 0.00 3.58
2686 2886 3.428532 AGCTCGAAGGGTAAGTAACTGA 58.571 45.455 0.00 0.00 0.00 3.41
2813 3016 4.030216 GGGAAAAGAGGGCAATGGATTTA 58.970 43.478 0.00 0.00 0.00 1.40
3095 3298 0.907486 AGGCTACTGCAGATGCTGAA 59.093 50.000 23.35 0.00 41.71 3.02
4171 4384 3.470709 TCTCAAGCAGTGGAAGAACAAG 58.529 45.455 0.00 0.00 0.00 3.16
4217 4430 3.088532 TGGCAAACCATGGTGAGATTAC 58.911 45.455 20.60 3.25 42.67 1.89
4261 4474 9.825109 TTCATATCATTGTTCAAATGCATCATT 57.175 25.926 0.00 0.00 35.39 2.57
4350 4563 0.606401 CACCTGGGCTCATGACGTTT 60.606 55.000 0.00 0.00 0.00 3.60
4500 4713 2.648059 GAGCTGGCAATGACCAAGTAT 58.352 47.619 0.00 0.00 39.86 2.12
4595 4808 1.485124 TATGAAGCGGCTGGAGAAGA 58.515 50.000 1.81 0.00 0.00 2.87
4711 4924 2.353109 GCTTGCACCCTGGAAATTTCTC 60.353 50.000 17.42 8.61 0.00 2.87
4725 4938 3.834489 ATTTCTCATGGACGCTCTCAT 57.166 42.857 0.00 0.00 0.00 2.90
4835 5048 2.047151 CTGTTGAACGCGTGCCTGTT 62.047 55.000 14.98 0.00 0.00 3.16
4847 5060 1.066454 GTGCCTGTTGTTGGTGTTACC 59.934 52.381 0.00 0.00 39.22 2.85
4907 5120 7.765307 AGTAATGGTGATTGTAAGAATTGCAG 58.235 34.615 0.00 0.00 42.90 4.41
4908 5121 4.439305 TGGTGATTGTAAGAATTGCAGC 57.561 40.909 0.00 0.00 42.90 5.25
4909 5122 3.825585 TGGTGATTGTAAGAATTGCAGCA 59.174 39.130 0.00 0.00 42.90 4.41
4912 5125 5.870978 GGTGATTGTAAGAATTGCAGCATTT 59.129 36.000 0.00 0.00 42.90 2.32
4942 5155 5.316167 TGTTGCTCAGATGATTTAAGTGGT 58.684 37.500 0.00 0.00 0.00 4.16
4949 5162 7.041508 GCTCAGATGATTTAAGTGGTATTCAGG 60.042 40.741 0.00 0.00 0.00 3.86
5009 5222 9.880157 AATTGTAAGAATTGCATTATCTTTGCT 57.120 25.926 12.57 0.00 41.29 3.91
5158 5371 1.133945 TGTAGTTTGTGCAGGCCTCAA 60.134 47.619 0.00 0.57 0.00 3.02
5169 5382 1.063183 AGGCCTCAAGTCAGAGCTTT 58.937 50.000 0.00 0.00 34.26 3.51
5406 5668 1.002134 AAGCCCACACCATTCCTCG 60.002 57.895 0.00 0.00 0.00 4.63
5520 5782 4.785453 GGGGAGGCAGCTTCACGG 62.785 72.222 6.88 0.00 0.00 4.94
5521 5783 4.021925 GGGAGGCAGCTTCACGGT 62.022 66.667 6.88 0.00 0.00 4.83
5523 5785 2.659610 GAGGCAGCTTCACGGTCT 59.340 61.111 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.264005 TATGACACAACCCAAAGCGT 57.736 45.000 0.00 0.00 0.00 5.07
134 135 2.925966 TAAGGAAACTCGGGTAGGGA 57.074 50.000 0.00 0.00 42.68 4.20
135 136 3.036091 TGATAAGGAAACTCGGGTAGGG 58.964 50.000 0.00 0.00 42.68 3.53
176 177 3.197983 GCTTCAAGCTTTCTAGGGGTCTA 59.802 47.826 0.71 0.00 38.45 2.59
187 188 1.891150 CCATGTCCTGCTTCAAGCTTT 59.109 47.619 11.57 0.00 42.97 3.51
224 225 1.453155 AGGTTAAATCTGTGGCGCAG 58.547 50.000 21.77 21.77 46.34 5.18
377 381 1.494824 AGTACCGAACGAAACACTGC 58.505 50.000 0.00 0.00 0.00 4.40
390 394 0.036306 AGGGTTTGCTCCAAGTACCG 59.964 55.000 0.00 0.00 28.18 4.02
408 412 7.642978 CCAGAAAATATTCGAGCTGAAATCAAG 59.357 37.037 0.00 0.00 40.71 3.02
487 654 6.146837 GTGCTAGATATTCATTGTCAAGCGAT 59.853 38.462 0.00 0.00 0.00 4.58
500 667 9.346725 CTCAAAAACAAAAGGTGCTAGATATTC 57.653 33.333 0.00 0.00 0.00 1.75
507 674 6.692486 TGTTTCTCAAAAACAAAAGGTGCTA 58.308 32.000 1.09 0.00 37.22 3.49
508 675 5.546526 TGTTTCTCAAAAACAAAAGGTGCT 58.453 33.333 1.09 0.00 37.22 4.40
509 676 5.854431 TGTTTCTCAAAAACAAAAGGTGC 57.146 34.783 1.09 0.00 37.22 5.01
510 677 7.593875 TCATGTTTCTCAAAAACAAAAGGTG 57.406 32.000 7.36 2.16 42.57 4.00
511 678 8.791327 ATTCATGTTTCTCAAAAACAAAAGGT 57.209 26.923 7.36 0.00 42.57 3.50
520 687 8.677300 GGTGCTAGATATTCATGTTTCTCAAAA 58.323 33.333 0.00 0.00 0.00 2.44
521 688 8.049117 AGGTGCTAGATATTCATGTTTCTCAAA 58.951 33.333 0.00 0.00 0.00 2.69
522 689 7.496920 CAGGTGCTAGATATTCATGTTTCTCAA 59.503 37.037 0.00 0.00 0.00 3.02
523 690 6.988580 CAGGTGCTAGATATTCATGTTTCTCA 59.011 38.462 0.00 0.00 0.00 3.27
524 691 6.426328 CCAGGTGCTAGATATTCATGTTTCTC 59.574 42.308 0.00 0.00 0.00 2.87
525 692 6.126652 ACCAGGTGCTAGATATTCATGTTTCT 60.127 38.462 0.00 0.00 0.00 2.52
526 693 6.058183 ACCAGGTGCTAGATATTCATGTTTC 58.942 40.000 0.00 0.00 0.00 2.78
527 694 6.006275 ACCAGGTGCTAGATATTCATGTTT 57.994 37.500 0.00 0.00 0.00 2.83
528 695 5.636903 ACCAGGTGCTAGATATTCATGTT 57.363 39.130 0.00 0.00 0.00 2.71
529 696 5.636903 AACCAGGTGCTAGATATTCATGT 57.363 39.130 0.00 0.00 0.00 3.21
530 697 5.934625 GGTAACCAGGTGCTAGATATTCATG 59.065 44.000 0.00 0.00 0.00 3.07
531 698 5.846714 AGGTAACCAGGTGCTAGATATTCAT 59.153 40.000 0.00 0.00 37.17 2.57
532 699 5.070446 CAGGTAACCAGGTGCTAGATATTCA 59.930 44.000 0.00 0.00 37.17 2.57
533 700 5.542779 CAGGTAACCAGGTGCTAGATATTC 58.457 45.833 0.00 0.00 37.17 1.75
534 701 4.202367 GCAGGTAACCAGGTGCTAGATATT 60.202 45.833 0.00 0.00 32.97 1.28
535 702 3.325135 GCAGGTAACCAGGTGCTAGATAT 59.675 47.826 0.00 0.00 32.97 1.63
536 703 2.698797 GCAGGTAACCAGGTGCTAGATA 59.301 50.000 0.00 0.00 32.97 1.98
537 704 1.486726 GCAGGTAACCAGGTGCTAGAT 59.513 52.381 0.00 0.00 32.97 1.98
538 705 0.902531 GCAGGTAACCAGGTGCTAGA 59.097 55.000 0.00 0.00 32.97 2.43
539 706 0.613260 TGCAGGTAACCAGGTGCTAG 59.387 55.000 0.00 0.00 36.84 3.42
540 707 1.060729 TTGCAGGTAACCAGGTGCTA 58.939 50.000 0.00 0.00 36.84 3.49
541 708 0.184933 TTTGCAGGTAACCAGGTGCT 59.815 50.000 0.00 0.00 36.84 4.40
542 709 1.036707 TTTTGCAGGTAACCAGGTGC 58.963 50.000 0.00 0.00 36.42 5.01
562 729 5.652452 GGTCAACCAGGTGCTAGATATTTTT 59.348 40.000 0.00 0.00 35.64 1.94
563 730 5.044846 AGGTCAACCAGGTGCTAGATATTTT 60.045 40.000 0.00 0.00 38.89 1.82
564 731 4.475016 AGGTCAACCAGGTGCTAGATATTT 59.525 41.667 0.00 0.00 38.89 1.40
565 732 4.040755 AGGTCAACCAGGTGCTAGATATT 58.959 43.478 0.00 0.00 38.89 1.28
566 733 3.658725 AGGTCAACCAGGTGCTAGATAT 58.341 45.455 0.00 0.00 38.89 1.63
567 734 3.116096 AGGTCAACCAGGTGCTAGATA 57.884 47.619 0.00 0.00 38.89 1.98
568 735 1.958288 AGGTCAACCAGGTGCTAGAT 58.042 50.000 0.00 0.00 38.89 1.98
569 736 1.729586 AAGGTCAACCAGGTGCTAGA 58.270 50.000 0.00 0.00 38.89 2.43
570 737 3.914426 ATAAGGTCAACCAGGTGCTAG 57.086 47.619 0.00 0.00 38.89 3.42
571 738 4.331968 CAAATAAGGTCAACCAGGTGCTA 58.668 43.478 0.00 0.00 38.89 3.49
588 755 2.040947 TCATCAGTGTGGGGTGCAAATA 59.959 45.455 0.00 0.00 0.00 1.40
596 763 3.828451 AGATTTTGTTCATCAGTGTGGGG 59.172 43.478 0.00 0.00 0.00 4.96
606 773 9.860898 GGCTTAAATTCTGTAGATTTTGTTCAT 57.139 29.630 10.44 0.00 32.16 2.57
611 778 5.743872 GGCGGCTTAAATTCTGTAGATTTTG 59.256 40.000 0.00 0.00 32.16 2.44
691 858 2.558554 AATCGAAGCCCACGACGGAG 62.559 60.000 0.00 0.00 42.37 4.63
716 883 2.427095 GTTGGTGCCTTATTCATGGACC 59.573 50.000 0.00 0.00 0.00 4.46
718 885 2.042297 TGGTTGGTGCCTTATTCATGGA 59.958 45.455 0.00 0.00 0.00 3.41
723 890 1.201414 CGGTTGGTTGGTGCCTTATTC 59.799 52.381 0.00 0.00 0.00 1.75
725 892 0.610785 CCGGTTGGTTGGTGCCTTAT 60.611 55.000 0.00 0.00 0.00 1.73
752 919 2.552585 GATCGAAGCCCACGACGGAA 62.553 60.000 0.00 0.00 42.37 4.30
776 943 1.075525 TACTGCGGTATCTGGGCCT 60.076 57.895 4.53 0.00 0.00 5.19
830 999 2.684927 CGAATGGCAAGGGAGGAATTCT 60.685 50.000 5.23 0.00 0.00 2.40
858 1027 3.633116 GTGGGTAGTGGCGTGGGT 61.633 66.667 0.00 0.00 0.00 4.51
1083 1270 0.961358 AGAGGAAGACGAGGACCACG 60.961 60.000 9.97 9.97 0.00 4.94
1217 1407 1.593006 CTCGTACGAAATCCATGGCAC 59.407 52.381 20.00 0.00 0.00 5.01
1353 1544 2.750637 GGCGGACTCCACTCTCGA 60.751 66.667 0.00 0.00 0.00 4.04
1386 1577 5.183904 GCTGAATAACAATCCTGAACCACTT 59.816 40.000 0.00 0.00 0.00 3.16
1581 1772 2.291741 CACCAAGAGAGCAAAACAGGAC 59.708 50.000 0.00 0.00 0.00 3.85
1614 1805 3.193267 GCAGCATCCAACCTACAATTGAA 59.807 43.478 13.59 0.00 0.00 2.69
1620 1811 0.692476 ACAGCAGCATCCAACCTACA 59.308 50.000 0.00 0.00 0.00 2.74
1652 1848 3.159472 ACTATGCCATGGGTATGCATTG 58.841 45.455 15.13 12.89 34.83 2.82
1757 1953 5.408604 ACGATAAAGCAAAAGACAACTCGAT 59.591 36.000 0.00 0.00 0.00 3.59
1758 1954 4.748102 ACGATAAAGCAAAAGACAACTCGA 59.252 37.500 0.00 0.00 0.00 4.04
1780 1976 4.321718 AGGAAAGTAAGGTTTTAGCCGAC 58.678 43.478 0.00 0.00 0.00 4.79
1821 2018 3.014304 TGTCATTAGAGCGGAGGTAGT 57.986 47.619 0.00 0.00 39.88 2.73
1822 2019 4.592485 AATGTCATTAGAGCGGAGGTAG 57.408 45.455 0.00 0.00 39.88 3.18
1823 2020 5.116180 CAAAATGTCATTAGAGCGGAGGTA 58.884 41.667 0.00 0.00 39.88 3.08
1824 2021 3.914426 AAATGTCATTAGAGCGGAGGT 57.086 42.857 0.00 0.00 46.54 3.85
1825 2022 3.313526 CCAAAATGTCATTAGAGCGGAGG 59.686 47.826 0.00 0.00 0.00 4.30
1826 2023 3.941483 ACCAAAATGTCATTAGAGCGGAG 59.059 43.478 0.00 0.00 0.00 4.63
1827 2024 3.950397 ACCAAAATGTCATTAGAGCGGA 58.050 40.909 0.00 0.00 0.00 5.54
1828 2025 4.273480 CCTACCAAAATGTCATTAGAGCGG 59.727 45.833 0.00 0.00 0.00 5.52
1829 2026 4.260784 GCCTACCAAAATGTCATTAGAGCG 60.261 45.833 0.00 0.00 0.00 5.03
1830 2027 4.884164 AGCCTACCAAAATGTCATTAGAGC 59.116 41.667 0.00 0.00 0.00 4.09
1831 2028 7.275920 ACTAGCCTACCAAAATGTCATTAGAG 58.724 38.462 0.00 0.00 0.00 2.43
1832 2029 7.195374 ACTAGCCTACCAAAATGTCATTAGA 57.805 36.000 0.00 0.00 0.00 2.10
1833 2030 7.865706 AACTAGCCTACCAAAATGTCATTAG 57.134 36.000 0.00 0.00 0.00 1.73
1834 2031 9.391006 CTAAACTAGCCTACCAAAATGTCATTA 57.609 33.333 0.00 0.00 0.00 1.90
1835 2032 7.148069 GCTAAACTAGCCTACCAAAATGTCATT 60.148 37.037 0.00 0.00 45.95 2.57
1836 2033 6.318900 GCTAAACTAGCCTACCAAAATGTCAT 59.681 38.462 0.00 0.00 45.95 3.06
1837 2034 5.646360 GCTAAACTAGCCTACCAAAATGTCA 59.354 40.000 0.00 0.00 45.95 3.58
1838 2035 6.120378 GCTAAACTAGCCTACCAAAATGTC 57.880 41.667 0.00 0.00 45.95 3.06
1852 2049 5.232463 TGACGTTTTGGTAGGCTAAACTAG 58.768 41.667 0.00 0.00 31.33 2.57
1853 2050 5.212532 TGACGTTTTGGTAGGCTAAACTA 57.787 39.130 0.00 0.00 31.33 2.24
1854 2051 4.075963 TGACGTTTTGGTAGGCTAAACT 57.924 40.909 0.00 0.00 31.33 2.66
1855 2052 6.673154 ATATGACGTTTTGGTAGGCTAAAC 57.327 37.500 0.00 0.00 0.00 2.01
1856 2053 8.967664 AATATATGACGTTTTGGTAGGCTAAA 57.032 30.769 0.00 0.00 0.00 1.85
1857 2054 8.967664 AAATATATGACGTTTTGGTAGGCTAA 57.032 30.769 0.00 0.00 0.00 3.09
1858 2055 8.967664 AAAATATATGACGTTTTGGTAGGCTA 57.032 30.769 0.00 0.00 0.00 3.93
1859 2056 7.875327 AAAATATATGACGTTTTGGTAGGCT 57.125 32.000 0.00 0.00 0.00 4.58
1860 2057 9.048446 TCTAAAATATATGACGTTTTGGTAGGC 57.952 33.333 0.00 0.00 0.00 3.93
1864 2061 8.392612 CCGTTCTAAAATATATGACGTTTTGGT 58.607 33.333 0.00 0.00 0.00 3.67
1865 2062 8.605746 TCCGTTCTAAAATATATGACGTTTTGG 58.394 33.333 0.00 0.00 0.00 3.28
1866 2063 9.632969 CTCCGTTCTAAAATATATGACGTTTTG 57.367 33.333 0.00 0.00 0.00 2.44
1867 2064 8.823818 CCTCCGTTCTAAAATATATGACGTTTT 58.176 33.333 0.00 0.00 0.00 2.43
1868 2065 7.983484 ACCTCCGTTCTAAAATATATGACGTTT 59.017 33.333 0.00 0.00 0.00 3.60
1869 2066 7.495055 ACCTCCGTTCTAAAATATATGACGTT 58.505 34.615 0.00 0.00 0.00 3.99
1870 2067 7.047460 ACCTCCGTTCTAAAATATATGACGT 57.953 36.000 0.00 0.00 0.00 4.34
1871 2068 8.295288 ACTACCTCCGTTCTAAAATATATGACG 58.705 37.037 0.00 0.00 0.00 4.35
1874 2071 9.570488 GCTACTACCTCCGTTCTAAAATATATG 57.430 37.037 0.00 0.00 0.00 1.78
1875 2072 9.305555 TGCTACTACCTCCGTTCTAAAATATAT 57.694 33.333 0.00 0.00 0.00 0.86
1876 2073 8.696043 TGCTACTACCTCCGTTCTAAAATATA 57.304 34.615 0.00 0.00 0.00 0.86
1877 2074 7.592885 TGCTACTACCTCCGTTCTAAAATAT 57.407 36.000 0.00 0.00 0.00 1.28
1878 2075 7.592885 ATGCTACTACCTCCGTTCTAAAATA 57.407 36.000 0.00 0.00 0.00 1.40
1879 2076 5.927281 TGCTACTACCTCCGTTCTAAAAT 57.073 39.130 0.00 0.00 0.00 1.82
1880 2077 5.927281 ATGCTACTACCTCCGTTCTAAAA 57.073 39.130 0.00 0.00 0.00 1.52
1881 2078 5.927281 AATGCTACTACCTCCGTTCTAAA 57.073 39.130 0.00 0.00 0.00 1.85
1882 2079 5.927281 AAATGCTACTACCTCCGTTCTAA 57.073 39.130 0.00 0.00 0.00 2.10
1883 2080 5.533903 CCTAAATGCTACTACCTCCGTTCTA 59.466 44.000 0.00 0.00 0.00 2.10
1884 2081 4.341520 CCTAAATGCTACTACCTCCGTTCT 59.658 45.833 0.00 0.00 0.00 3.01
1885 2082 4.340381 TCCTAAATGCTACTACCTCCGTTC 59.660 45.833 0.00 0.00 0.00 3.95
1886 2083 4.284178 TCCTAAATGCTACTACCTCCGTT 58.716 43.478 0.00 0.00 0.00 4.44
1887 2084 3.907221 TCCTAAATGCTACTACCTCCGT 58.093 45.455 0.00 0.00 0.00 4.69
1888 2085 4.098960 TGTTCCTAAATGCTACTACCTCCG 59.901 45.833 0.00 0.00 0.00 4.63
1889 2086 5.609533 TGTTCCTAAATGCTACTACCTCC 57.390 43.478 0.00 0.00 0.00 4.30
1890 2087 7.048512 ACATTGTTCCTAAATGCTACTACCTC 58.951 38.462 0.00 0.00 38.36 3.85
1891 2088 6.958767 ACATTGTTCCTAAATGCTACTACCT 58.041 36.000 0.00 0.00 38.36 3.08
1892 2089 7.625828 AACATTGTTCCTAAATGCTACTACC 57.374 36.000 0.00 0.00 38.36 3.18
1893 2090 8.512138 ACAAACATTGTTCCTAAATGCTACTAC 58.488 33.333 1.83 0.00 42.22 2.73
1894 2091 8.630054 ACAAACATTGTTCCTAAATGCTACTA 57.370 30.769 1.83 0.00 42.22 1.82
1895 2092 7.524717 ACAAACATTGTTCCTAAATGCTACT 57.475 32.000 1.83 0.00 42.22 2.57
1969 2167 6.321717 GGATCTGCAAACGAACAAAATATGA 58.678 36.000 0.00 0.00 0.00 2.15
2813 3016 3.448686 CGCTTCATCATCTTTCCGTACT 58.551 45.455 0.00 0.00 0.00 2.73
2870 3073 3.604582 GACAGCAGAATCTACAGCCTTT 58.395 45.455 0.00 0.00 0.00 3.11
3095 3298 3.972227 GCACACCTGCGATGAAGT 58.028 55.556 0.00 0.00 32.44 3.01
4171 4384 4.091549 TGTGGTAGATCCCGGTAATATCC 58.908 47.826 0.00 0.00 34.77 2.59
4217 4430 8.088365 TGATATGAAATCCTACGGTGATGTTAG 58.912 37.037 0.00 0.00 0.00 2.34
4261 4474 6.942976 AGAAAACGGTAGGATAATGTGAGAA 58.057 36.000 0.00 0.00 0.00 2.87
4350 4563 1.302192 GGGGTGCGTCAGCTTGTAA 60.302 57.895 8.51 0.00 45.42 2.41
4595 4808 4.283363 ACTTCTGCTTCAGATGTGTGAT 57.717 40.909 12.60 0.00 43.79 3.06
4711 4924 2.830104 TCAATCATGAGAGCGTCCATG 58.170 47.619 0.09 8.35 40.97 3.66
4725 4938 8.478066 ACTGCTAAGACTATAACACATCAATCA 58.522 33.333 0.00 0.00 0.00 2.57
4808 5021 0.450482 CGCGTTCAACAGGTTTAGCG 60.450 55.000 0.00 0.00 40.37 4.26
4835 5048 0.733729 GCAACACGGTAACACCAACA 59.266 50.000 0.00 0.00 38.47 3.33
4847 5060 8.647613 TCTACTATAGTAGCCCTAAGCAACACG 61.648 44.444 28.22 6.66 45.69 4.49
4885 5098 5.047164 TGCTGCAATTCTTACAATCACCATT 60.047 36.000 0.00 0.00 0.00 3.16
4891 5104 7.823149 AGAAAATGCTGCAATTCTTACAATC 57.177 32.000 21.31 7.73 0.00 2.67
4907 5120 2.729882 CTGAGCAACAGCAAGAAAATGC 59.270 45.455 0.00 0.00 46.78 3.56
4908 5121 4.233123 TCTGAGCAACAGCAAGAAAATG 57.767 40.909 6.13 0.00 45.38 2.32
4909 5122 4.521639 TCATCTGAGCAACAGCAAGAAAAT 59.478 37.500 6.13 0.00 45.38 1.82
4912 5125 3.130280 TCATCTGAGCAACAGCAAGAA 57.870 42.857 6.13 0.00 45.38 2.52
4949 5162 8.190888 ACACGTCTTCTCTCATAATTTTGATC 57.809 34.615 0.00 0.00 0.00 2.92
5009 5222 2.301870 ACTCGAATACTCCCAAGCAACA 59.698 45.455 0.00 0.00 0.00 3.33
5158 5371 4.101741 ACACTACTTTGGAAAGCTCTGACT 59.898 41.667 0.00 0.00 39.63 3.41
5169 5382 1.202879 CCCTTGGCACACTACTTTGGA 60.203 52.381 0.00 0.00 39.29 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.