Multiple sequence alignment - TraesCS5D01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G325300 chr5D 100.000 3119 0 0 1 3119 416789986 416786868 0.000000e+00 5760.0
1 TraesCS5D01G325300 chr5D 82.787 122 16 5 2999 3119 61421511 61421394 1.530000e-18 104.0
2 TraesCS5D01G325300 chr5D 80.645 124 19 3 1957 2079 416626962 416626843 1.190000e-14 91.6
3 TraesCS5D01G325300 chr5D 78.472 144 25 4 1981 2119 416811485 416811343 4.280000e-14 89.8
4 TraesCS5D01G325300 chr5B 95.278 1927 67 14 695 2612 503792838 503790927 0.000000e+00 3033.0
5 TraesCS5D01G325300 chr5B 87.374 697 81 5 1 694 34490419 34489727 0.000000e+00 793.0
6 TraesCS5D01G325300 chr5B 94.904 157 8 0 2963 3119 503790932 503790776 2.400000e-61 246.0
7 TraesCS5D01G325300 chr5B 81.452 124 18 4 1957 2079 503529413 503529294 2.560000e-16 97.1
8 TraesCS5D01G325300 chr5A 93.532 1948 77 20 698 2630 529849882 529847969 0.000000e+00 2854.0
9 TraesCS5D01G325300 chr5A 89.157 166 11 1 2961 3119 529847972 529847807 1.900000e-47 200.0
10 TraesCS5D01G325300 chr6B 90.368 706 58 3 2 698 113850944 113850240 0.000000e+00 918.0
11 TraesCS5D01G325300 chr4D 90.213 705 60 2 2 697 5247991 5248695 0.000000e+00 911.0
12 TraesCS5D01G325300 chr4D 88.588 701 70 8 1 695 102112892 102113588 0.000000e+00 843.0
13 TraesCS5D01G325300 chr4D 87.037 702 73 9 1 696 414225639 414224950 0.000000e+00 776.0
14 TraesCS5D01G325300 chr2D 89.773 704 66 3 1 698 469172112 469171409 0.000000e+00 896.0
15 TraesCS5D01G325300 chr2D 90.580 552 32 4 1 552 645998945 645998414 0.000000e+00 713.0
16 TraesCS5D01G325300 chr7D 88.873 701 67 6 3 697 107722732 107723427 0.000000e+00 852.0
17 TraesCS5D01G325300 chr7D 94.134 358 1 2 2629 2966 124025227 124025584 7.660000e-146 527.0
18 TraesCS5D01G325300 chr7D 86.066 122 15 2 2999 3119 15877195 15877315 2.520000e-26 130.0
19 TraesCS5D01G325300 chr2B 86.686 706 78 9 1 699 181999362 182000058 0.000000e+00 769.0
20 TraesCS5D01G325300 chr2B 81.402 371 38 13 2626 2966 92605736 92605367 1.100000e-69 274.0
21 TraesCS5D01G325300 chr3D 86.429 700 81 6 2 695 593766311 593767002 0.000000e+00 754.0
22 TraesCS5D01G325300 chr3D 90.816 98 7 2 2872 2968 533876656 533876752 2.520000e-26 130.0
23 TraesCS5D01G325300 chr3D 86.066 122 15 2 2999 3119 584963024 584962904 2.520000e-26 130.0
24 TraesCS5D01G325300 chr4B 90.935 353 15 9 2628 2963 31193474 31193826 2.830000e-125 459.0
25 TraesCS5D01G325300 chr6D 83.616 354 39 7 2629 2963 430042485 430042132 6.490000e-82 315.0
26 TraesCS5D01G325300 chr3B 84.191 272 26 7 2712 2966 167260413 167260684 6.680000e-62 248.0
27 TraesCS5D01G325300 chr3B 97.647 85 1 1 2533 2617 824660110 824660027 9.020000e-31 145.0
28 TraesCS5D01G325300 chr1D 83.544 158 19 5 2969 3119 452488345 452488188 1.170000e-29 141.0
29 TraesCS5D01G325300 chr3A 96.471 85 2 1 2533 2617 750067424 750067507 4.190000e-29 139.0
30 TraesCS5D01G325300 chr7A 84.426 122 17 2 2999 3119 14797837 14797957 5.460000e-23 119.0
31 TraesCS5D01G325300 chr4A 87.640 89 8 3 2999 3085 719181061 719181148 1.980000e-17 100.0
32 TraesCS5D01G325300 chr2A 83.158 95 11 5 2999 3091 58470212 58470121 7.170000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G325300 chr5D 416786868 416789986 3118 True 5760.0 5760 100.0000 1 3119 1 chr5D.!!$R3 3118
1 TraesCS5D01G325300 chr5B 503790776 503792838 2062 True 1639.5 3033 95.0910 695 3119 2 chr5B.!!$R3 2424
2 TraesCS5D01G325300 chr5B 34489727 34490419 692 True 793.0 793 87.3740 1 694 1 chr5B.!!$R1 693
3 TraesCS5D01G325300 chr5A 529847807 529849882 2075 True 1527.0 2854 91.3445 698 3119 2 chr5A.!!$R1 2421
4 TraesCS5D01G325300 chr6B 113850240 113850944 704 True 918.0 918 90.3680 2 698 1 chr6B.!!$R1 696
5 TraesCS5D01G325300 chr4D 5247991 5248695 704 False 911.0 911 90.2130 2 697 1 chr4D.!!$F1 695
6 TraesCS5D01G325300 chr4D 102112892 102113588 696 False 843.0 843 88.5880 1 695 1 chr4D.!!$F2 694
7 TraesCS5D01G325300 chr4D 414224950 414225639 689 True 776.0 776 87.0370 1 696 1 chr4D.!!$R1 695
8 TraesCS5D01G325300 chr2D 469171409 469172112 703 True 896.0 896 89.7730 1 698 1 chr2D.!!$R1 697
9 TraesCS5D01G325300 chr2D 645998414 645998945 531 True 713.0 713 90.5800 1 552 1 chr2D.!!$R2 551
10 TraesCS5D01G325300 chr7D 107722732 107723427 695 False 852.0 852 88.8730 3 697 1 chr7D.!!$F2 694
11 TraesCS5D01G325300 chr2B 181999362 182000058 696 False 769.0 769 86.6860 1 699 1 chr2B.!!$F1 698
12 TraesCS5D01G325300 chr3D 593766311 593767002 691 False 754.0 754 86.4290 2 695 1 chr3D.!!$F2 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 654 0.606944 TGCGGGCCGAACAGTAAAAT 60.607 50.0 33.44 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 2186 0.320697 GAGGTCTAACACGGCAGGTT 59.679 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 244 7.906736 TGCTTATCTACCTCTATTCCCCATTAT 59.093 37.037 0.00 0.00 0.00 1.28
269 296 4.675146 CGGATCGAACGGGAAAAAGTACTA 60.675 45.833 0.00 0.00 0.00 1.82
303 332 2.500098 AGAGAAGTGCTTACCGCCATTA 59.500 45.455 0.00 0.00 38.05 1.90
329 358 1.162800 GCCAAGTGATGATCCGCTCC 61.163 60.000 0.00 0.00 0.00 4.70
374 403 3.910490 GCTCTGCTCCGATCCGCT 61.910 66.667 0.00 0.00 0.00 5.52
408 439 2.766229 GGGAGAGTGGGGGAGAGC 60.766 72.222 0.00 0.00 0.00 4.09
563 594 1.805539 CTGCCGATTCGAGCGTTCA 60.806 57.895 7.83 5.72 0.00 3.18
573 604 3.959991 GAGCGTTCACAGGGAGCCC 62.960 68.421 0.00 0.00 0.00 5.19
593 624 2.028567 CCGGCCCAAAAATGCTTTAAGA 60.029 45.455 0.00 0.00 0.00 2.10
600 631 6.372381 GCCCAAAAATGCTTTAAGATTCATGT 59.628 34.615 0.00 0.00 0.00 3.21
622 654 0.606944 TGCGGGCCGAACAGTAAAAT 60.607 50.000 33.44 0.00 0.00 1.82
625 657 1.129811 CGGGCCGAACAGTAAAATCAC 59.870 52.381 24.41 0.00 0.00 3.06
626 658 2.156098 GGGCCGAACAGTAAAATCACA 58.844 47.619 0.00 0.00 0.00 3.58
656 688 0.686224 ACCCGTTTTCATCCCGTACA 59.314 50.000 0.00 0.00 0.00 2.90
767 800 1.552337 TCTTCCCACTCACTGCATCTC 59.448 52.381 0.00 0.00 0.00 2.75
825 858 0.741915 CCTACTCAACCTCGCTCCTC 59.258 60.000 0.00 0.00 0.00 3.71
868 901 4.778143 CCGTGGCCTTCTTCCCCG 62.778 72.222 3.32 0.00 0.00 5.73
871 904 4.033776 TGGCCTTCTTCCCCGCTG 62.034 66.667 3.32 0.00 0.00 5.18
896 929 4.077184 TTCCGCGGCTCCATTCGT 62.077 61.111 23.51 0.00 0.00 3.85
920 953 2.753029 GCTGTGCTGTCCCTTCCT 59.247 61.111 0.00 0.00 0.00 3.36
939 972 2.356780 GCCGCAGTACCTGTACCCT 61.357 63.158 3.89 0.00 36.75 4.34
1101 1134 1.294138 GGCGCTGTACTACAACCCA 59.706 57.895 7.64 0.00 0.00 4.51
1196 1229 2.266055 GGCAGAGGTGGAAGACGG 59.734 66.667 0.00 0.00 0.00 4.79
1282 1315 2.979676 TCGCAGGCAGCAAACCAG 60.980 61.111 1.96 0.00 46.13 4.00
1338 1371 2.057137 TCTGCAACATCCCCAATAGC 57.943 50.000 0.00 0.00 0.00 2.97
1342 1375 2.025037 TGCAACATCCCCAATAGCTTCT 60.025 45.455 0.00 0.00 0.00 2.85
1357 1390 7.278868 CCAATAGCTTCTTGTTAGTACTTCCTG 59.721 40.741 0.00 0.00 0.00 3.86
1358 1391 4.570930 AGCTTCTTGTTAGTACTTCCTGC 58.429 43.478 0.00 0.00 0.00 4.85
1366 1399 7.387948 TCTTGTTAGTACTTCCTGCATTTCTTC 59.612 37.037 0.00 0.00 0.00 2.87
1374 1407 5.010415 ACTTCCTGCATTTCTTCTTTCTTGG 59.990 40.000 0.00 0.00 0.00 3.61
1429 1462 6.072508 GGATGTTCTTGATTGTTGCTTCAGTA 60.073 38.462 0.00 0.00 0.00 2.74
1619 1652 3.652057 AGTACACCAATCCCCATCTTG 57.348 47.619 0.00 0.00 0.00 3.02
1620 1653 2.919602 AGTACACCAATCCCCATCTTGT 59.080 45.455 0.00 0.00 0.00 3.16
1621 1654 4.108570 AGTACACCAATCCCCATCTTGTA 58.891 43.478 0.00 0.00 0.00 2.41
1622 1655 3.366052 ACACCAATCCCCATCTTGTAC 57.634 47.619 0.00 0.00 0.00 2.90
1749 1790 2.431771 TCAACATGACGACGCCGG 60.432 61.111 0.00 0.00 40.78 6.13
1872 1913 1.347707 TCTTCTCCGGCATGAACACTT 59.652 47.619 0.00 0.00 0.00 3.16
2137 2186 2.606961 CCTTGTTCGCTCGCTGCAA 61.607 57.895 0.00 0.00 43.06 4.08
2141 2190 2.280797 TTCGCTCGCTGCAAACCT 60.281 55.556 0.00 0.00 43.06 3.50
2173 2222 8.580720 GTTAGACCTCTATCTTGCATTCTATCA 58.419 37.037 0.00 0.00 0.00 2.15
2182 2231 6.080648 TCTTGCATTCTATCAATTCCATGC 57.919 37.500 0.00 0.00 38.00 4.06
2231 2280 1.757699 AGAACGGGAGATAGAGGTTGC 59.242 52.381 0.00 0.00 0.00 4.17
2260 2309 9.044150 CAGTTATGAATTTCCATTCTCTCTCTC 57.956 37.037 0.00 0.00 39.81 3.20
2307 2356 4.698201 TGACTATTTGGTTGTGTCTCCA 57.302 40.909 0.00 0.00 0.00 3.86
2333 2382 6.207221 TGTTTAAGCATGAATCTTCAGAAGCA 59.793 34.615 5.15 0.00 41.08 3.91
2338 2387 5.353678 AGCATGAATCTTCAGAAGCAAGTAC 59.646 40.000 5.15 0.00 41.08 2.73
2389 2440 2.415625 CGAGTAGTCCAGTTGGTAGCAC 60.416 54.545 0.00 0.00 36.34 4.40
2495 2548 6.927294 ATTAAATGTACTGAAGCCTAGTGC 57.073 37.500 0.00 0.00 41.71 4.40
2630 2684 4.931914 ACTGCACTAGTAGAGGTTCCTTA 58.068 43.478 3.59 0.00 38.04 2.69
2632 2686 4.279145 TGCACTAGTAGAGGTTCCTTAGG 58.721 47.826 3.59 0.00 0.00 2.69
2633 2687 3.637694 GCACTAGTAGAGGTTCCTTAGGG 59.362 52.174 3.59 0.00 0.00 3.53
2634 2688 3.637694 CACTAGTAGAGGTTCCTTAGGGC 59.362 52.174 3.59 0.00 0.00 5.19
2635 2689 2.942604 AGTAGAGGTTCCTTAGGGCA 57.057 50.000 0.00 0.00 0.00 5.36
2636 2690 3.423058 AGTAGAGGTTCCTTAGGGCAT 57.577 47.619 0.00 0.00 0.00 4.40
2637 2691 3.041946 AGTAGAGGTTCCTTAGGGCATG 58.958 50.000 0.00 0.00 0.00 4.06
2638 2692 1.972588 AGAGGTTCCTTAGGGCATGT 58.027 50.000 0.00 0.00 0.00 3.21
2639 2693 1.561542 AGAGGTTCCTTAGGGCATGTG 59.438 52.381 0.00 0.00 0.00 3.21
2640 2694 0.034089 AGGTTCCTTAGGGCATGTGC 60.034 55.000 0.00 0.00 41.14 4.57
2641 2695 0.323360 GGTTCCTTAGGGCATGTGCA 60.323 55.000 7.36 0.00 44.36 4.57
2642 2696 1.544724 GTTCCTTAGGGCATGTGCAA 58.455 50.000 7.36 0.00 44.36 4.08
2643 2697 1.202348 GTTCCTTAGGGCATGTGCAAC 59.798 52.381 7.36 0.00 44.36 4.17
2655 2709 1.438651 TGTGCAACAGATTAGACGGC 58.561 50.000 0.00 0.00 45.67 5.68
2656 2710 0.727398 GTGCAACAGATTAGACGGCC 59.273 55.000 0.00 0.00 36.32 6.13
2657 2711 0.739462 TGCAACAGATTAGACGGCCG 60.739 55.000 26.86 26.86 0.00 6.13
2658 2712 0.739813 GCAACAGATTAGACGGCCGT 60.740 55.000 34.89 34.89 0.00 5.68
2659 2713 1.722011 CAACAGATTAGACGGCCGTT 58.278 50.000 34.65 23.40 0.00 4.44
2660 2714 1.393539 CAACAGATTAGACGGCCGTTG 59.606 52.381 34.65 26.73 0.00 4.10
2661 2715 0.606604 ACAGATTAGACGGCCGTTGT 59.393 50.000 34.65 27.45 0.00 3.32
2662 2716 1.278238 CAGATTAGACGGCCGTTGTC 58.722 55.000 34.65 25.07 36.60 3.18
2664 2718 1.135083 AGATTAGACGGCCGTTGTCTG 60.135 52.381 34.65 0.00 45.83 3.51
2665 2719 0.606604 ATTAGACGGCCGTTGTCTGT 59.393 50.000 34.65 14.86 45.83 3.41
2666 2720 1.246649 TTAGACGGCCGTTGTCTGTA 58.753 50.000 34.65 14.27 45.83 2.74
2667 2721 1.246649 TAGACGGCCGTTGTCTGTAA 58.753 50.000 34.65 7.31 45.83 2.41
2668 2722 0.606604 AGACGGCCGTTGTCTGTAAT 59.393 50.000 34.65 4.34 44.69 1.89
2669 2723 1.820519 AGACGGCCGTTGTCTGTAATA 59.179 47.619 34.65 0.00 44.69 0.98
2670 2724 1.922545 GACGGCCGTTGTCTGTAATAC 59.077 52.381 34.65 11.13 33.54 1.89
2671 2725 1.547372 ACGGCCGTTGTCTGTAATACT 59.453 47.619 28.70 0.00 0.00 2.12
2672 2726 1.924524 CGGCCGTTGTCTGTAATACTG 59.075 52.381 19.50 0.00 0.00 2.74
2673 2727 1.664151 GGCCGTTGTCTGTAATACTGC 59.336 52.381 0.00 0.00 0.00 4.40
2674 2728 2.618053 GCCGTTGTCTGTAATACTGCT 58.382 47.619 0.00 0.00 0.00 4.24
2675 2729 2.603560 GCCGTTGTCTGTAATACTGCTC 59.396 50.000 0.00 0.00 0.00 4.26
2676 2730 3.187700 CCGTTGTCTGTAATACTGCTCC 58.812 50.000 0.00 0.00 0.00 4.70
2677 2731 3.368013 CCGTTGTCTGTAATACTGCTCCA 60.368 47.826 0.00 0.00 0.00 3.86
2678 2732 3.612860 CGTTGTCTGTAATACTGCTCCAC 59.387 47.826 0.00 0.00 0.00 4.02
2679 2733 3.503827 TGTCTGTAATACTGCTCCACG 57.496 47.619 0.00 0.00 0.00 4.94
2680 2734 2.823747 TGTCTGTAATACTGCTCCACGT 59.176 45.455 0.00 0.00 0.00 4.49
2681 2735 3.119602 TGTCTGTAATACTGCTCCACGTC 60.120 47.826 0.00 0.00 0.00 4.34
2682 2736 3.086282 TCTGTAATACTGCTCCACGTCA 58.914 45.455 0.00 0.00 0.00 4.35
2683 2737 3.699538 TCTGTAATACTGCTCCACGTCAT 59.300 43.478 0.00 0.00 0.00 3.06
2684 2738 4.159693 TCTGTAATACTGCTCCACGTCATT 59.840 41.667 0.00 0.00 0.00 2.57
2685 2739 4.827692 TGTAATACTGCTCCACGTCATTT 58.172 39.130 0.00 0.00 0.00 2.32
2686 2740 4.629634 TGTAATACTGCTCCACGTCATTTG 59.370 41.667 0.00 0.00 0.00 2.32
2687 2741 1.438651 TACTGCTCCACGTCATTTGC 58.561 50.000 0.00 0.00 0.00 3.68
2688 2742 0.534877 ACTGCTCCACGTCATTTGCA 60.535 50.000 0.00 0.00 0.00 4.08
2689 2743 0.167470 CTGCTCCACGTCATTTGCAG 59.833 55.000 9.87 9.87 41.15 4.41
2690 2744 0.250252 TGCTCCACGTCATTTGCAGA 60.250 50.000 0.00 0.00 0.00 4.26
2691 2745 0.166814 GCTCCACGTCATTTGCAGAC 59.833 55.000 0.00 0.00 0.00 3.51
2692 2746 1.511850 CTCCACGTCATTTGCAGACA 58.488 50.000 5.54 0.00 35.77 3.41
2693 2747 1.462283 CTCCACGTCATTTGCAGACAG 59.538 52.381 5.54 1.50 35.77 3.51
2694 2748 0.518636 CCACGTCATTTGCAGACAGG 59.481 55.000 5.54 2.89 35.77 4.00
2695 2749 1.511850 CACGTCATTTGCAGACAGGA 58.488 50.000 5.54 0.00 35.77 3.86
2696 2750 2.079158 CACGTCATTTGCAGACAGGAT 58.921 47.619 5.54 0.00 35.77 3.24
2697 2751 2.079158 ACGTCATTTGCAGACAGGATG 58.921 47.619 5.54 1.21 46.00 3.51
2716 2770 8.749841 CAGGATGTACAGATAGCTATTACAAC 57.250 38.462 16.78 14.54 30.12 3.32
2717 2771 7.539022 CAGGATGTACAGATAGCTATTACAACG 59.461 40.741 16.78 6.15 30.12 4.10
2718 2772 6.807230 GGATGTACAGATAGCTATTACAACGG 59.193 42.308 16.78 4.88 30.12 4.44
2719 2773 6.080648 TGTACAGATAGCTATTACAACGGG 57.919 41.667 7.87 0.00 0.00 5.28
2720 2774 5.595542 TGTACAGATAGCTATTACAACGGGT 59.404 40.000 7.87 2.10 0.00 5.28
2721 2775 5.609533 ACAGATAGCTATTACAACGGGTT 57.390 39.130 7.87 0.00 0.00 4.11
2722 2776 5.357257 ACAGATAGCTATTACAACGGGTTG 58.643 41.667 7.87 9.87 45.58 3.77
2736 2790 6.404712 CAACGGGTTGTCTTTAGAGTTATC 57.595 41.667 3.41 0.00 35.92 1.75
2737 2791 5.997384 ACGGGTTGTCTTTAGAGTTATCT 57.003 39.130 0.00 0.00 39.75 1.98
2738 2792 7.318141 CAACGGGTTGTCTTTAGAGTTATCTA 58.682 38.462 3.41 0.00 35.13 1.98
2739 2793 7.472334 ACGGGTTGTCTTTAGAGTTATCTAA 57.528 36.000 0.00 0.00 44.51 2.10
2754 2808 7.535489 AGTTATCTAAAACTCCATAACGTGC 57.465 36.000 0.00 0.00 34.60 5.34
2755 2809 7.101054 AGTTATCTAAAACTCCATAACGTGCA 58.899 34.615 0.00 0.00 34.60 4.57
2756 2810 7.769044 AGTTATCTAAAACTCCATAACGTGCAT 59.231 33.333 0.00 0.00 34.60 3.96
2757 2811 5.794687 TCTAAAACTCCATAACGTGCATG 57.205 39.130 3.82 3.82 0.00 4.06
2758 2812 2.919666 AAACTCCATAACGTGCATGC 57.080 45.000 11.82 11.82 0.00 4.06
2759 2813 1.819928 AACTCCATAACGTGCATGCA 58.180 45.000 18.46 18.46 0.00 3.96
2760 2814 2.042686 ACTCCATAACGTGCATGCAT 57.957 45.000 25.64 10.90 0.00 3.96
2761 2815 3.192541 ACTCCATAACGTGCATGCATA 57.807 42.857 25.64 13.01 0.00 3.14
2762 2816 3.743521 ACTCCATAACGTGCATGCATAT 58.256 40.909 25.64 14.86 0.00 1.78
2763 2817 4.136796 ACTCCATAACGTGCATGCATATT 58.863 39.130 25.64 21.91 0.00 1.28
2764 2818 4.580167 ACTCCATAACGTGCATGCATATTT 59.420 37.500 25.64 18.41 0.00 1.40
2765 2819 5.762711 ACTCCATAACGTGCATGCATATTTA 59.237 36.000 25.64 19.88 0.00 1.40
2766 2820 6.262049 ACTCCATAACGTGCATGCATATTTAA 59.738 34.615 25.64 8.21 0.00 1.52
2767 2821 7.032377 TCCATAACGTGCATGCATATTTAAA 57.968 32.000 25.64 6.95 0.00 1.52
2768 2822 6.915300 TCCATAACGTGCATGCATATTTAAAC 59.085 34.615 25.64 7.15 0.00 2.01
2769 2823 6.694844 CCATAACGTGCATGCATATTTAAACA 59.305 34.615 25.64 6.24 0.00 2.83
2770 2824 7.096518 CCATAACGTGCATGCATATTTAAACAG 60.097 37.037 25.64 11.84 0.00 3.16
2771 2825 4.671377 ACGTGCATGCATATTTAAACAGG 58.329 39.130 25.64 4.57 0.00 4.00
2772 2826 4.157656 ACGTGCATGCATATTTAAACAGGT 59.842 37.500 25.64 5.25 0.00 4.00
2773 2827 5.101628 CGTGCATGCATATTTAAACAGGTT 58.898 37.500 25.64 0.00 0.00 3.50
2774 2828 5.576384 CGTGCATGCATATTTAAACAGGTTT 59.424 36.000 25.64 2.66 36.63 3.27
2775 2829 6.237542 CGTGCATGCATATTTAAACAGGTTTC 60.238 38.462 25.64 3.21 34.23 2.78
2776 2830 6.035975 GTGCATGCATATTTAAACAGGTTTCC 59.964 38.462 25.64 0.00 34.23 3.13
2777 2831 6.070881 TGCATGCATATTTAAACAGGTTTCCT 60.071 34.615 18.46 0.00 34.23 3.36
2785 2839 2.429930 CAGGTTTCCTGCCCACGA 59.570 61.111 2.77 0.00 45.13 4.35
2786 2840 1.002134 CAGGTTTCCTGCCCACGAT 60.002 57.895 2.77 0.00 45.13 3.73
2787 2841 1.002134 AGGTTTCCTGCCCACGATG 60.002 57.895 0.00 0.00 29.57 3.84
2788 2842 2.700773 GGTTTCCTGCCCACGATGC 61.701 63.158 0.00 0.00 0.00 3.91
2789 2843 2.745884 TTTCCTGCCCACGATGCG 60.746 61.111 0.00 0.00 0.00 4.73
2790 2844 4.776322 TTCCTGCCCACGATGCGG 62.776 66.667 0.00 0.00 34.81 5.69
2797 2851 4.854924 CCACGATGCGGCCCATGA 62.855 66.667 10.99 0.00 33.29 3.07
2798 2852 2.592574 CACGATGCGGCCCATGAT 60.593 61.111 10.99 0.00 33.29 2.45
2799 2853 1.301637 CACGATGCGGCCCATGATA 60.302 57.895 10.99 0.00 33.29 2.15
2800 2854 0.884259 CACGATGCGGCCCATGATAA 60.884 55.000 10.99 0.00 33.29 1.75
2801 2855 0.884704 ACGATGCGGCCCATGATAAC 60.885 55.000 10.99 0.00 33.29 1.89
2802 2856 1.577328 CGATGCGGCCCATGATAACC 61.577 60.000 10.99 0.00 33.29 2.85
2803 2857 0.537143 GATGCGGCCCATGATAACCA 60.537 55.000 10.99 0.00 33.29 3.67
2804 2858 0.106268 ATGCGGCCCATGATAACCAA 60.106 50.000 0.00 0.00 31.48 3.67
2805 2859 1.034838 TGCGGCCCATGATAACCAAC 61.035 55.000 0.00 0.00 0.00 3.77
2806 2860 2.021722 CGGCCCATGATAACCAACG 58.978 57.895 0.00 0.00 0.00 4.10
2807 2861 1.733526 GGCCCATGATAACCAACGC 59.266 57.895 0.00 0.00 0.00 4.84
2808 2862 1.034838 GGCCCATGATAACCAACGCA 61.035 55.000 0.00 0.00 0.00 5.24
2809 2863 0.100503 GCCCATGATAACCAACGCAC 59.899 55.000 0.00 0.00 0.00 5.34
2810 2864 1.750193 CCCATGATAACCAACGCACT 58.250 50.000 0.00 0.00 0.00 4.40
2811 2865 2.912771 CCCATGATAACCAACGCACTA 58.087 47.619 0.00 0.00 0.00 2.74
2812 2866 2.872245 CCCATGATAACCAACGCACTAG 59.128 50.000 0.00 0.00 0.00 2.57
2813 2867 3.531538 CCATGATAACCAACGCACTAGT 58.468 45.455 0.00 0.00 0.00 2.57
2814 2868 4.442332 CCCATGATAACCAACGCACTAGTA 60.442 45.833 0.00 0.00 0.00 1.82
2815 2869 4.506654 CCATGATAACCAACGCACTAGTAC 59.493 45.833 0.00 0.00 0.00 2.73
2816 2870 4.787260 TGATAACCAACGCACTAGTACA 57.213 40.909 0.00 0.00 0.00 2.90
2817 2871 5.136816 TGATAACCAACGCACTAGTACAA 57.863 39.130 0.00 0.00 0.00 2.41
2818 2872 4.925054 TGATAACCAACGCACTAGTACAAC 59.075 41.667 0.00 0.00 0.00 3.32
2819 2873 1.774639 ACCAACGCACTAGTACAACG 58.225 50.000 0.00 0.00 0.00 4.10
2820 2874 1.065358 CCAACGCACTAGTACAACGG 58.935 55.000 0.00 0.00 0.00 4.44
2821 2875 1.065358 CAACGCACTAGTACAACGGG 58.935 55.000 0.00 0.00 0.00 5.28
2822 2876 0.961019 AACGCACTAGTACAACGGGA 59.039 50.000 0.00 0.00 0.00 5.14
2823 2877 0.961019 ACGCACTAGTACAACGGGAA 59.039 50.000 0.00 0.00 0.00 3.97
2824 2878 1.340889 ACGCACTAGTACAACGGGAAA 59.659 47.619 0.00 0.00 0.00 3.13
2825 2879 2.224018 ACGCACTAGTACAACGGGAAAA 60.224 45.455 0.00 0.00 0.00 2.29
2826 2880 2.410730 CGCACTAGTACAACGGGAAAAG 59.589 50.000 0.00 0.00 0.00 2.27
2827 2881 3.656559 GCACTAGTACAACGGGAAAAGA 58.343 45.455 0.00 0.00 0.00 2.52
2828 2882 4.251268 GCACTAGTACAACGGGAAAAGAT 58.749 43.478 0.00 0.00 0.00 2.40
2829 2883 4.329256 GCACTAGTACAACGGGAAAAGATC 59.671 45.833 0.00 0.00 0.00 2.75
2830 2884 4.561606 CACTAGTACAACGGGAAAAGATCG 59.438 45.833 0.00 0.00 0.00 3.69
2831 2885 3.672767 AGTACAACGGGAAAAGATCGT 57.327 42.857 0.00 0.00 38.89 3.73
2832 2886 3.582780 AGTACAACGGGAAAAGATCGTC 58.417 45.455 0.00 0.00 36.01 4.20
2833 2887 2.833631 ACAACGGGAAAAGATCGTCT 57.166 45.000 0.00 0.00 36.01 4.18
2834 2888 2.413837 ACAACGGGAAAAGATCGTCTG 58.586 47.619 0.00 0.00 36.01 3.51
2835 2889 2.224209 ACAACGGGAAAAGATCGTCTGT 60.224 45.455 0.00 0.00 36.01 3.41
2836 2890 3.006110 ACAACGGGAAAAGATCGTCTGTA 59.994 43.478 0.00 0.00 36.01 2.74
2837 2891 3.947910 ACGGGAAAAGATCGTCTGTAA 57.052 42.857 0.00 0.00 30.89 2.41
2838 2892 3.582780 ACGGGAAAAGATCGTCTGTAAC 58.417 45.455 0.00 0.00 30.89 2.50
2852 2906 5.462991 GTCTGTAACGAGCGATTTATACG 57.537 43.478 0.00 0.00 0.00 3.06
2853 2907 4.378030 GTCTGTAACGAGCGATTTATACGG 59.622 45.833 0.00 0.00 0.00 4.02
2854 2908 3.044986 TGTAACGAGCGATTTATACGGC 58.955 45.455 0.00 0.00 0.00 5.68
2855 2909 2.212869 AACGAGCGATTTATACGGCA 57.787 45.000 0.00 0.00 0.00 5.69
2856 2910 2.212869 ACGAGCGATTTATACGGCAA 57.787 45.000 0.00 0.00 0.00 4.52
2857 2911 1.856597 ACGAGCGATTTATACGGCAAC 59.143 47.619 0.00 0.00 0.00 4.17
2858 2912 1.855978 CGAGCGATTTATACGGCAACA 59.144 47.619 0.00 0.00 0.00 3.33
2859 2913 2.097396 CGAGCGATTTATACGGCAACAG 60.097 50.000 0.00 0.00 0.00 3.16
2860 2914 3.120792 GAGCGATTTATACGGCAACAGA 58.879 45.455 0.00 0.00 0.00 3.41
2861 2915 3.728845 AGCGATTTATACGGCAACAGAT 58.271 40.909 0.00 0.00 0.00 2.90
2862 2916 3.741344 AGCGATTTATACGGCAACAGATC 59.259 43.478 0.00 0.00 0.00 2.75
2863 2917 3.421826 GCGATTTATACGGCAACAGATCG 60.422 47.826 0.00 0.00 38.42 3.69
2864 2918 3.734231 CGATTTATACGGCAACAGATCGT 59.266 43.478 0.00 0.00 40.40 3.73
2865 2919 4.143597 CGATTTATACGGCAACAGATCGTC 60.144 45.833 0.00 0.00 38.19 4.20
2866 2920 2.394545 TATACGGCAACAGATCGTCG 57.605 50.000 0.00 0.00 38.19 5.12
2867 2921 0.870307 ATACGGCAACAGATCGTCGC 60.870 55.000 0.00 0.00 38.19 5.19
2868 2922 1.929806 TACGGCAACAGATCGTCGCT 61.930 55.000 0.00 0.00 38.19 4.93
2869 2923 1.226575 CGGCAACAGATCGTCGCTA 60.227 57.895 1.73 0.00 0.00 4.26
2870 2924 0.595053 CGGCAACAGATCGTCGCTAT 60.595 55.000 1.73 0.00 0.00 2.97
2871 2925 1.571919 GGCAACAGATCGTCGCTATT 58.428 50.000 1.73 0.00 0.00 1.73
2872 2926 1.933853 GGCAACAGATCGTCGCTATTT 59.066 47.619 1.73 0.00 0.00 1.40
2873 2927 2.033662 GGCAACAGATCGTCGCTATTTC 60.034 50.000 1.73 0.00 0.00 2.17
2874 2928 2.603110 GCAACAGATCGTCGCTATTTCA 59.397 45.455 0.00 0.00 0.00 2.69
2875 2929 3.302092 GCAACAGATCGTCGCTATTTCAG 60.302 47.826 0.00 0.00 0.00 3.02
2876 2930 3.784701 ACAGATCGTCGCTATTTCAGT 57.215 42.857 0.00 0.00 0.00 3.41
2877 2931 4.111375 ACAGATCGTCGCTATTTCAGTT 57.889 40.909 0.00 0.00 0.00 3.16
2878 2932 4.495422 ACAGATCGTCGCTATTTCAGTTT 58.505 39.130 0.00 0.00 0.00 2.66
2879 2933 4.929808 ACAGATCGTCGCTATTTCAGTTTT 59.070 37.500 0.00 0.00 0.00 2.43
2880 2934 5.062308 ACAGATCGTCGCTATTTCAGTTTTC 59.938 40.000 0.00 0.00 0.00 2.29
2881 2935 5.289675 CAGATCGTCGCTATTTCAGTTTTCT 59.710 40.000 0.00 0.00 0.00 2.52
2882 2936 5.517054 AGATCGTCGCTATTTCAGTTTTCTC 59.483 40.000 0.00 0.00 0.00 2.87
2883 2937 4.806330 TCGTCGCTATTTCAGTTTTCTCT 58.194 39.130 0.00 0.00 0.00 3.10
2884 2938 5.227908 TCGTCGCTATTTCAGTTTTCTCTT 58.772 37.500 0.00 0.00 0.00 2.85
2885 2939 5.694910 TCGTCGCTATTTCAGTTTTCTCTTT 59.305 36.000 0.00 0.00 0.00 2.52
2886 2940 6.010074 CGTCGCTATTTCAGTTTTCTCTTTC 58.990 40.000 0.00 0.00 0.00 2.62
2887 2941 6.128795 CGTCGCTATTTCAGTTTTCTCTTTCT 60.129 38.462 0.00 0.00 0.00 2.52
2888 2942 7.230914 GTCGCTATTTCAGTTTTCTCTTTCTC 58.769 38.462 0.00 0.00 0.00 2.87
2889 2943 7.117092 GTCGCTATTTCAGTTTTCTCTTTCTCT 59.883 37.037 0.00 0.00 0.00 3.10
2890 2944 7.329717 TCGCTATTTCAGTTTTCTCTTTCTCTC 59.670 37.037 0.00 0.00 0.00 3.20
2891 2945 7.330700 CGCTATTTCAGTTTTCTCTTTCTCTCT 59.669 37.037 0.00 0.00 0.00 3.10
2892 2946 8.655970 GCTATTTCAGTTTTCTCTTTCTCTCTC 58.344 37.037 0.00 0.00 0.00 3.20
2893 2947 7.977789 ATTTCAGTTTTCTCTTTCTCTCTCC 57.022 36.000 0.00 0.00 0.00 3.71
2894 2948 5.476091 TCAGTTTTCTCTTTCTCTCTCCC 57.524 43.478 0.00 0.00 0.00 4.30
2895 2949 4.284746 TCAGTTTTCTCTTTCTCTCTCCCC 59.715 45.833 0.00 0.00 0.00 4.81
2896 2950 3.585289 AGTTTTCTCTTTCTCTCTCCCCC 59.415 47.826 0.00 0.00 0.00 5.40
2897 2951 3.275848 TTTCTCTTTCTCTCTCCCCCA 57.724 47.619 0.00 0.00 0.00 4.96
2898 2952 2.239681 TCTCTTTCTCTCTCCCCCAC 57.760 55.000 0.00 0.00 0.00 4.61
2899 2953 0.820871 CTCTTTCTCTCTCCCCCACG 59.179 60.000 0.00 0.00 0.00 4.94
2900 2954 0.114560 TCTTTCTCTCTCCCCCACGT 59.885 55.000 0.00 0.00 0.00 4.49
2901 2955 0.533032 CTTTCTCTCTCCCCCACGTC 59.467 60.000 0.00 0.00 0.00 4.34
2902 2956 0.178944 TTTCTCTCTCCCCCACGTCA 60.179 55.000 0.00 0.00 0.00 4.35
2903 2957 0.178944 TTCTCTCTCCCCCACGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
2904 2958 0.041238 TCTCTCTCCCCCACGTCAAT 59.959 55.000 0.00 0.00 0.00 2.57
2905 2959 0.905357 CTCTCTCCCCCACGTCAATT 59.095 55.000 0.00 0.00 0.00 2.32
2906 2960 2.108168 CTCTCTCCCCCACGTCAATTA 58.892 52.381 0.00 0.00 0.00 1.40
2907 2961 2.700897 CTCTCTCCCCCACGTCAATTAT 59.299 50.000 0.00 0.00 0.00 1.28
2908 2962 3.112263 TCTCTCCCCCACGTCAATTATT 58.888 45.455 0.00 0.00 0.00 1.40
2909 2963 3.521937 TCTCTCCCCCACGTCAATTATTT 59.478 43.478 0.00 0.00 0.00 1.40
2910 2964 4.018779 TCTCTCCCCCACGTCAATTATTTT 60.019 41.667 0.00 0.00 0.00 1.82
2911 2965 4.266714 TCTCCCCCACGTCAATTATTTTC 58.733 43.478 0.00 0.00 0.00 2.29
2912 2966 3.358118 TCCCCCACGTCAATTATTTTCC 58.642 45.455 0.00 0.00 0.00 3.13
2913 2967 3.010808 TCCCCCACGTCAATTATTTTCCT 59.989 43.478 0.00 0.00 0.00 3.36
2914 2968 4.227754 TCCCCCACGTCAATTATTTTCCTA 59.772 41.667 0.00 0.00 0.00 2.94
2915 2969 5.103855 TCCCCCACGTCAATTATTTTCCTAT 60.104 40.000 0.00 0.00 0.00 2.57
2916 2970 5.009610 CCCCCACGTCAATTATTTTCCTATG 59.990 44.000 0.00 0.00 0.00 2.23
2917 2971 5.592688 CCCCACGTCAATTATTTTCCTATGT 59.407 40.000 0.00 0.00 0.00 2.29
2918 2972 6.459573 CCCCACGTCAATTATTTTCCTATGTG 60.460 42.308 0.00 0.00 0.00 3.21
2919 2973 6.459573 CCCACGTCAATTATTTTCCTATGTGG 60.460 42.308 0.00 0.00 41.16 4.17
2920 2974 5.971202 CACGTCAATTATTTTCCTATGTGGC 59.029 40.000 0.00 0.00 35.26 5.01
2921 2975 5.650266 ACGTCAATTATTTTCCTATGTGGCA 59.350 36.000 0.00 0.00 35.26 4.92
2922 2976 6.183360 ACGTCAATTATTTTCCTATGTGGCAG 60.183 38.462 0.00 0.00 35.26 4.85
2923 2977 5.979517 GTCAATTATTTTCCTATGTGGCAGC 59.020 40.000 0.00 0.00 35.26 5.25
2924 2978 5.893255 TCAATTATTTTCCTATGTGGCAGCT 59.107 36.000 0.00 0.00 35.26 4.24
2925 2979 5.779529 ATTATTTTCCTATGTGGCAGCTG 57.220 39.130 10.11 10.11 35.26 4.24
2926 2980 2.584835 TTTTCCTATGTGGCAGCTGT 57.415 45.000 16.64 0.00 35.26 4.40
2927 2981 2.584835 TTTCCTATGTGGCAGCTGTT 57.415 45.000 16.64 0.00 35.26 3.16
2928 2982 3.712016 TTTCCTATGTGGCAGCTGTTA 57.288 42.857 16.64 1.32 35.26 2.41
2929 2983 3.712016 TTCCTATGTGGCAGCTGTTAA 57.288 42.857 16.64 0.00 35.26 2.01
2930 2984 3.712016 TCCTATGTGGCAGCTGTTAAA 57.288 42.857 16.64 0.00 35.26 1.52
2931 2985 3.609853 TCCTATGTGGCAGCTGTTAAAG 58.390 45.455 16.64 5.84 35.26 1.85
2932 2986 3.263170 TCCTATGTGGCAGCTGTTAAAGA 59.737 43.478 16.64 0.00 35.26 2.52
2933 2987 3.375299 CCTATGTGGCAGCTGTTAAAGAC 59.625 47.826 16.64 4.03 0.00 3.01
2934 2988 1.225855 TGTGGCAGCTGTTAAAGACG 58.774 50.000 16.64 0.00 0.00 4.18
2935 2989 0.517316 GTGGCAGCTGTTAAAGACGG 59.483 55.000 16.64 0.00 37.71 4.79
2943 2997 2.755650 CTGTTAAAGACGGCTGACTGT 58.244 47.619 0.00 0.00 38.42 3.55
2944 2998 3.909430 CTGTTAAAGACGGCTGACTGTA 58.091 45.455 0.00 0.00 34.75 2.74
2945 2999 3.645884 TGTTAAAGACGGCTGACTGTAC 58.354 45.455 0.00 0.00 34.75 2.90
2946 3000 2.991866 GTTAAAGACGGCTGACTGTACC 59.008 50.000 0.00 0.00 34.75 3.34
2947 3001 0.320697 AAAGACGGCTGACTGTACCC 59.679 55.000 0.00 0.00 34.75 3.69
2948 3002 0.542232 AAGACGGCTGACTGTACCCT 60.542 55.000 0.00 0.00 34.75 4.34
2949 3003 1.215647 GACGGCTGACTGTACCCTG 59.784 63.158 0.00 0.00 34.75 4.45
2950 3004 1.533273 ACGGCTGACTGTACCCTGT 60.533 57.895 0.00 0.00 31.99 4.00
2951 3005 1.119574 ACGGCTGACTGTACCCTGTT 61.120 55.000 0.00 0.00 31.99 3.16
2952 3006 0.670546 CGGCTGACTGTACCCTGTTG 60.671 60.000 0.00 0.00 0.00 3.33
2953 3007 0.396811 GGCTGACTGTACCCTGTTGT 59.603 55.000 0.00 0.00 0.00 3.32
2954 3008 1.621814 GGCTGACTGTACCCTGTTGTA 59.378 52.381 0.00 0.00 0.00 2.41
2955 3009 2.612221 GGCTGACTGTACCCTGTTGTAC 60.612 54.545 0.00 0.00 41.18 2.90
2956 3010 2.036733 GCTGACTGTACCCTGTTGTACA 59.963 50.000 0.00 0.00 46.55 2.90
2960 3014 2.483014 TGTACCCTGTTGTACATGCC 57.517 50.000 0.00 0.00 44.53 4.40
2961 3015 1.003812 TGTACCCTGTTGTACATGCCC 59.996 52.381 0.00 0.00 44.53 5.36
2962 3016 1.280998 GTACCCTGTTGTACATGCCCT 59.719 52.381 0.00 0.00 40.63 5.19
2963 3017 0.777446 ACCCTGTTGTACATGCCCTT 59.223 50.000 0.00 0.00 0.00 3.95
2964 3018 1.989586 ACCCTGTTGTACATGCCCTTA 59.010 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
269 296 3.858877 GCACTTCTCTCTGTTCGTCATGT 60.859 47.826 0.00 0.00 0.00 3.21
374 403 4.680237 CAACTCTCACCGGCGGCA 62.680 66.667 28.71 12.45 0.00 5.69
531 562 2.166270 GGCAGTTTCTTCAGAGCCG 58.834 57.895 0.00 0.00 31.88 5.52
535 566 2.029380 TCGAATCGGCAGTTTCTTCAGA 60.029 45.455 1.76 0.00 0.00 3.27
573 604 3.311486 TCTTAAAGCATTTTTGGGCCG 57.689 42.857 0.00 0.00 40.09 6.13
580 611 7.009815 CGCATGACATGAATCTTAAAGCATTTT 59.990 33.333 19.76 0.00 40.09 1.82
581 612 6.474427 CGCATGACATGAATCTTAAAGCATTT 59.526 34.615 19.76 0.00 43.42 2.32
583 614 5.506815 CCGCATGACATGAATCTTAAAGCAT 60.507 40.000 19.76 0.00 0.00 3.79
593 624 2.188829 CGGCCCGCATGACATGAAT 61.189 57.895 19.76 0.00 0.00 2.57
600 631 2.173758 TTACTGTTCGGCCCGCATGA 62.174 55.000 0.00 0.00 0.00 3.07
622 654 1.313772 CGGGTTGATTGGTTGTGTGA 58.686 50.000 0.00 0.00 0.00 3.58
625 657 2.880963 AAACGGGTTGATTGGTTGTG 57.119 45.000 0.00 0.00 0.00 3.33
626 658 2.761208 TGAAAACGGGTTGATTGGTTGT 59.239 40.909 0.00 0.00 0.00 3.32
680 713 1.156736 CTTCTAGGGCGTGTTTGGTG 58.843 55.000 0.00 0.00 0.00 4.17
715 748 1.401552 CTCGAGAGACTGGAGAAGCAG 59.598 57.143 6.58 0.00 38.34 4.24
767 800 0.593128 CTTGCTTCTTTCACCGGTGG 59.407 55.000 33.40 18.31 0.00 4.61
849 882 4.426313 GGGAAGAAGGCCACGGGG 62.426 72.222 5.01 0.00 37.18 5.73
863 896 2.604686 AACAGAGCTCAGCGGGGA 60.605 61.111 17.77 0.00 0.00 4.81
868 901 3.184683 CGCGGAACAGAGCTCAGC 61.185 66.667 17.77 9.95 0.00 4.26
871 904 4.443266 AGCCGCGGAACAGAGCTC 62.443 66.667 33.48 5.27 0.00 4.09
896 929 4.687215 GACAGCACAGCGGCAGGA 62.687 66.667 1.45 0.00 35.83 3.86
1128 1161 4.377708 TCCGTGATGCTGCAGCGT 62.378 61.111 32.92 32.92 45.83 5.07
1178 1211 2.125912 CGTCTTCCACCTCTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
1222 1255 4.200283 CGCGCTCCTCCTCCAGAC 62.200 72.222 5.56 0.00 0.00 3.51
1282 1315 0.949105 TTGCTTCTTCCGTCGAAGGC 60.949 55.000 13.06 0.20 44.88 4.35
1338 1371 7.389053 AGAAATGCAGGAAGTACTAACAAGAAG 59.611 37.037 0.00 0.00 0.00 2.85
1342 1375 7.224297 AGAAGAAATGCAGGAAGTACTAACAA 58.776 34.615 0.00 0.00 0.00 2.83
1357 1390 7.150640 AGATTGAACCAAGAAAGAAGAAATGC 58.849 34.615 0.00 0.00 0.00 3.56
1358 1391 8.975439 CAAGATTGAACCAAGAAAGAAGAAATG 58.025 33.333 0.00 0.00 0.00 2.32
1366 1399 5.443185 TCAGCAAGATTGAACCAAGAAAG 57.557 39.130 0.00 0.00 0.00 2.62
1374 1407 4.516698 TCAAGAACCTCAGCAAGATTGAAC 59.483 41.667 0.00 0.00 0.00 3.18
1619 1652 5.461737 CCTACACGAGCAGTAGTAGTAGTAC 59.538 48.000 7.01 7.01 37.78 2.73
1620 1653 5.452496 CCCTACACGAGCAGTAGTAGTAGTA 60.452 48.000 0.00 0.00 37.78 1.82
1621 1654 4.440880 CCTACACGAGCAGTAGTAGTAGT 58.559 47.826 0.00 0.00 37.78 2.73
1622 1655 3.808726 CCCTACACGAGCAGTAGTAGTAG 59.191 52.174 0.00 0.00 37.78 2.57
1872 1913 7.710044 CAGGTACTCGAGTATTCTACTAGAACA 59.290 40.741 27.02 0.00 39.40 3.18
1915 1961 4.488879 GAGCAACCAAACATCCATTTCTC 58.511 43.478 0.00 0.00 0.00 2.87
2137 2186 0.320697 GAGGTCTAACACGGCAGGTT 59.679 55.000 0.00 0.00 0.00 3.50
2141 2190 3.014304 AGATAGAGGTCTAACACGGCA 57.986 47.619 0.00 0.00 31.39 5.69
2173 2222 1.476110 GCATTGGCATGGCATGGAATT 60.476 47.619 27.48 1.40 40.72 2.17
2182 2231 1.525077 GGCATTGGCATTGGCATGG 60.525 57.895 25.25 10.09 43.71 3.66
2231 2280 7.992033 AGAGAGAATGGAAATTCATAACTGAGG 59.008 37.037 0.00 0.00 33.16 3.86
2276 2325 6.527722 CACAACCAAATAGTCATGGAAATTCG 59.472 38.462 0.00 0.00 39.12 3.34
2307 2356 7.094075 TGCTTCTGAAGATTCATGCTTAAACAT 60.094 33.333 21.06 0.00 36.46 2.71
2333 2382 7.580910 TGCCTGGACTATTAGTACTAGTACTT 58.419 38.462 34.30 22.46 43.35 2.24
2338 2387 4.218852 GCCTGCCTGGACTATTAGTACTAG 59.781 50.000 7.56 3.73 38.35 2.57
2389 2440 1.000827 CCTCACTGGCTAGACGCATAG 60.001 57.143 3.17 0.00 41.67 2.23
2495 2548 6.763135 TGTCTAGCACATAAATAAGCTCCTTG 59.237 38.462 0.00 0.00 38.47 3.61
2552 2605 1.425412 TAAGGCGAACGCAGAAAGAC 58.575 50.000 20.16 1.78 44.11 3.01
2630 2684 2.025981 TCTAATCTGTTGCACATGCCCT 60.026 45.455 0.49 0.00 41.18 5.19
2632 2686 2.223112 CGTCTAATCTGTTGCACATGCC 60.223 50.000 0.49 0.00 41.18 4.40
2633 2687 2.223112 CCGTCTAATCTGTTGCACATGC 60.223 50.000 0.00 0.00 42.50 4.06
2634 2688 2.223112 GCCGTCTAATCTGTTGCACATG 60.223 50.000 0.00 0.00 0.00 3.21
2635 2689 2.009774 GCCGTCTAATCTGTTGCACAT 58.990 47.619 0.00 0.00 0.00 3.21
2636 2690 1.438651 GCCGTCTAATCTGTTGCACA 58.561 50.000 0.00 0.00 0.00 4.57
2637 2691 0.727398 GGCCGTCTAATCTGTTGCAC 59.273 55.000 0.00 0.00 0.00 4.57
2638 2692 0.739462 CGGCCGTCTAATCTGTTGCA 60.739 55.000 19.50 0.00 0.00 4.08
2639 2693 0.739813 ACGGCCGTCTAATCTGTTGC 60.740 55.000 28.70 0.00 0.00 4.17
2640 2694 1.393539 CAACGGCCGTCTAATCTGTTG 59.606 52.381 34.29 18.97 39.68 3.33
2641 2695 1.001633 ACAACGGCCGTCTAATCTGTT 59.998 47.619 34.29 9.83 0.00 3.16
2642 2696 0.606604 ACAACGGCCGTCTAATCTGT 59.393 50.000 34.29 27.21 0.00 3.41
2643 2697 1.135083 AGACAACGGCCGTCTAATCTG 60.135 52.381 34.29 26.49 41.91 2.90
2644 2698 1.135083 CAGACAACGGCCGTCTAATCT 60.135 52.381 34.29 26.23 41.80 2.40
2645 2699 1.278238 CAGACAACGGCCGTCTAATC 58.722 55.000 34.29 24.48 41.80 1.75
2646 2700 0.606604 ACAGACAACGGCCGTCTAAT 59.393 50.000 34.29 17.42 41.80 1.73
2647 2701 1.246649 TACAGACAACGGCCGTCTAA 58.753 50.000 34.29 12.98 41.80 2.10
2648 2702 1.246649 TTACAGACAACGGCCGTCTA 58.753 50.000 34.29 7.60 41.80 2.59
2649 2703 0.606604 ATTACAGACAACGGCCGTCT 59.393 50.000 34.29 22.20 44.55 4.18
2650 2704 1.922545 GTATTACAGACAACGGCCGTC 59.077 52.381 34.29 20.00 0.00 4.79
2651 2705 1.547372 AGTATTACAGACAACGGCCGT 59.453 47.619 28.70 28.70 0.00 5.68
2652 2706 1.924524 CAGTATTACAGACAACGGCCG 59.075 52.381 26.86 26.86 0.00 6.13
2653 2707 1.664151 GCAGTATTACAGACAACGGCC 59.336 52.381 0.00 0.00 0.00 6.13
2654 2708 2.603560 GAGCAGTATTACAGACAACGGC 59.396 50.000 0.00 0.00 33.94 5.68
2655 2709 3.187700 GGAGCAGTATTACAGACAACGG 58.812 50.000 0.00 0.00 0.00 4.44
2656 2710 3.612860 GTGGAGCAGTATTACAGACAACG 59.387 47.826 0.00 0.00 0.00 4.10
2657 2711 3.612860 CGTGGAGCAGTATTACAGACAAC 59.387 47.826 0.00 0.00 0.00 3.32
2658 2712 3.257375 ACGTGGAGCAGTATTACAGACAA 59.743 43.478 0.00 0.00 0.00 3.18
2659 2713 2.823747 ACGTGGAGCAGTATTACAGACA 59.176 45.455 0.00 0.00 0.00 3.41
2660 2714 3.119602 TGACGTGGAGCAGTATTACAGAC 60.120 47.826 0.00 0.00 0.00 3.51
2661 2715 3.086282 TGACGTGGAGCAGTATTACAGA 58.914 45.455 0.00 0.00 0.00 3.41
2662 2716 3.503827 TGACGTGGAGCAGTATTACAG 57.496 47.619 0.00 0.00 0.00 2.74
2663 2717 4.465632 AATGACGTGGAGCAGTATTACA 57.534 40.909 0.00 0.00 0.00 2.41
2664 2718 4.494199 GCAAATGACGTGGAGCAGTATTAC 60.494 45.833 0.00 0.00 0.00 1.89
2665 2719 3.621268 GCAAATGACGTGGAGCAGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
2666 2720 2.420022 GCAAATGACGTGGAGCAGTATT 59.580 45.455 0.00 0.00 0.00 1.89
2667 2721 2.009774 GCAAATGACGTGGAGCAGTAT 58.990 47.619 0.00 0.00 0.00 2.12
2668 2722 1.270571 TGCAAATGACGTGGAGCAGTA 60.271 47.619 0.00 0.00 0.00 2.74
2669 2723 0.534877 TGCAAATGACGTGGAGCAGT 60.535 50.000 0.00 0.00 0.00 4.40
2670 2724 0.167470 CTGCAAATGACGTGGAGCAG 59.833 55.000 0.00 1.27 42.69 4.24
2671 2725 0.250252 TCTGCAAATGACGTGGAGCA 60.250 50.000 0.00 0.00 34.67 4.26
2672 2726 0.166814 GTCTGCAAATGACGTGGAGC 59.833 55.000 0.00 0.00 34.67 4.70
2673 2727 1.462283 CTGTCTGCAAATGACGTGGAG 59.538 52.381 0.00 0.00 37.26 3.86
2674 2728 1.511850 CTGTCTGCAAATGACGTGGA 58.488 50.000 0.00 0.00 37.26 4.02
2675 2729 0.518636 CCTGTCTGCAAATGACGTGG 59.481 55.000 0.00 2.18 37.26 4.94
2676 2730 1.511850 TCCTGTCTGCAAATGACGTG 58.488 50.000 0.00 0.00 37.26 4.49
2677 2731 2.079158 CATCCTGTCTGCAAATGACGT 58.921 47.619 0.00 0.00 37.26 4.34
2678 2732 2.079158 ACATCCTGTCTGCAAATGACG 58.921 47.619 0.73 0.00 37.26 4.35
2679 2733 4.002982 TGTACATCCTGTCTGCAAATGAC 58.997 43.478 0.00 0.00 35.21 3.06
2680 2734 4.020307 TCTGTACATCCTGTCTGCAAATGA 60.020 41.667 0.00 0.00 0.00 2.57
2681 2735 4.256110 TCTGTACATCCTGTCTGCAAATG 58.744 43.478 0.00 0.00 0.00 2.32
2682 2736 4.558226 TCTGTACATCCTGTCTGCAAAT 57.442 40.909 0.00 0.00 0.00 2.32
2683 2737 4.558226 ATCTGTACATCCTGTCTGCAAA 57.442 40.909 0.00 0.00 0.00 3.68
2684 2738 4.442052 GCTATCTGTACATCCTGTCTGCAA 60.442 45.833 0.00 0.00 0.00 4.08
2685 2739 3.068732 GCTATCTGTACATCCTGTCTGCA 59.931 47.826 0.00 0.00 0.00 4.41
2686 2740 3.320541 AGCTATCTGTACATCCTGTCTGC 59.679 47.826 0.00 0.00 0.00 4.26
2687 2741 6.832520 ATAGCTATCTGTACATCCTGTCTG 57.167 41.667 0.00 0.00 0.00 3.51
2688 2742 7.945109 TGTAATAGCTATCTGTACATCCTGTCT 59.055 37.037 6.72 0.00 0.00 3.41
2689 2743 8.112016 TGTAATAGCTATCTGTACATCCTGTC 57.888 38.462 6.72 0.00 0.00 3.51
2690 2744 8.361139 GTTGTAATAGCTATCTGTACATCCTGT 58.639 37.037 14.56 0.00 29.78 4.00
2691 2745 7.539022 CGTTGTAATAGCTATCTGTACATCCTG 59.461 40.741 14.56 5.07 29.78 3.86
2692 2746 7.309255 CCGTTGTAATAGCTATCTGTACATCCT 60.309 40.741 14.56 0.00 29.78 3.24
2693 2747 6.807230 CCGTTGTAATAGCTATCTGTACATCC 59.193 42.308 14.56 9.37 29.78 3.51
2694 2748 6.807230 CCCGTTGTAATAGCTATCTGTACATC 59.193 42.308 14.56 13.01 29.78 3.06
2695 2749 6.267014 ACCCGTTGTAATAGCTATCTGTACAT 59.733 38.462 14.56 0.00 29.78 2.29
2696 2750 5.595542 ACCCGTTGTAATAGCTATCTGTACA 59.404 40.000 6.72 9.45 0.00 2.90
2697 2751 6.081872 ACCCGTTGTAATAGCTATCTGTAC 57.918 41.667 6.72 6.89 0.00 2.90
2698 2752 6.509656 CAACCCGTTGTAATAGCTATCTGTA 58.490 40.000 6.72 0.00 35.92 2.74
2699 2753 5.357257 CAACCCGTTGTAATAGCTATCTGT 58.643 41.667 6.72 0.00 35.92 3.41
2700 2754 5.907197 CAACCCGTTGTAATAGCTATCTG 57.093 43.478 6.72 0.00 35.92 2.90
2712 2766 7.039504 TAGATAACTCTAAAGACAACCCGTTGT 60.040 37.037 12.86 12.86 42.20 3.32
2713 2767 6.164176 AGATAACTCTAAAGACAACCCGTTG 58.836 40.000 6.03 6.03 45.58 4.10
2714 2768 6.356186 AGATAACTCTAAAGACAACCCGTT 57.644 37.500 0.00 0.00 0.00 4.44
2715 2769 5.997384 AGATAACTCTAAAGACAACCCGT 57.003 39.130 0.00 0.00 0.00 5.28
2730 2784 7.101054 TGCACGTTATGGAGTTTTAGATAACT 58.899 34.615 0.00 0.00 40.92 2.24
2731 2785 7.298507 TGCACGTTATGGAGTTTTAGATAAC 57.701 36.000 0.00 0.00 0.00 1.89
2732 2786 7.466725 GCATGCACGTTATGGAGTTTTAGATAA 60.467 37.037 14.21 0.00 28.84 1.75
2733 2787 6.018262 GCATGCACGTTATGGAGTTTTAGATA 60.018 38.462 14.21 0.00 28.84 1.98
2734 2788 5.220854 GCATGCACGTTATGGAGTTTTAGAT 60.221 40.000 14.21 0.00 28.84 1.98
2735 2789 4.094294 GCATGCACGTTATGGAGTTTTAGA 59.906 41.667 14.21 0.00 28.84 2.10
2736 2790 4.142708 TGCATGCACGTTATGGAGTTTTAG 60.143 41.667 18.46 0.00 28.84 1.85
2737 2791 3.753797 TGCATGCACGTTATGGAGTTTTA 59.246 39.130 18.46 0.00 28.84 1.52
2738 2792 2.556189 TGCATGCACGTTATGGAGTTTT 59.444 40.909 18.46 0.00 28.84 2.43
2739 2793 2.158559 TGCATGCACGTTATGGAGTTT 58.841 42.857 18.46 0.00 28.84 2.66
2740 2794 1.819928 TGCATGCACGTTATGGAGTT 58.180 45.000 18.46 0.00 28.84 3.01
2741 2795 2.042686 ATGCATGCACGTTATGGAGT 57.957 45.000 25.37 0.00 28.84 3.85
2742 2796 4.754372 AATATGCATGCACGTTATGGAG 57.246 40.909 25.37 0.00 28.84 3.86
2743 2797 6.625873 TTAAATATGCATGCACGTTATGGA 57.374 33.333 25.37 6.20 0.00 3.41
2744 2798 6.694844 TGTTTAAATATGCATGCACGTTATGG 59.305 34.615 25.37 0.00 0.00 2.74
2745 2799 7.096518 CCTGTTTAAATATGCATGCACGTTATG 60.097 37.037 25.37 10.99 0.00 1.90
2746 2800 6.917477 CCTGTTTAAATATGCATGCACGTTAT 59.083 34.615 25.37 14.49 0.00 1.89
2747 2801 6.127869 ACCTGTTTAAATATGCATGCACGTTA 60.128 34.615 25.37 17.68 0.00 3.18
2748 2802 5.101628 CCTGTTTAAATATGCATGCACGTT 58.898 37.500 25.37 17.64 0.00 3.99
2749 2803 4.157656 ACCTGTTTAAATATGCATGCACGT 59.842 37.500 25.37 11.24 0.00 4.49
2750 2804 4.671377 ACCTGTTTAAATATGCATGCACG 58.329 39.130 25.37 4.30 0.00 5.34
2751 2805 6.035975 GGAAACCTGTTTAAATATGCATGCAC 59.964 38.462 25.37 8.21 32.11 4.57
2752 2806 6.070881 AGGAAACCTGTTTAAATATGCATGCA 60.071 34.615 25.04 25.04 32.11 3.96
2753 2807 6.256321 CAGGAAACCTGTTTAAATATGCATGC 59.744 38.462 11.82 11.82 45.82 4.06
2754 2808 7.760131 CAGGAAACCTGTTTAAATATGCATG 57.240 36.000 10.16 0.00 45.82 4.06
2769 2823 1.002134 CATCGTGGGCAGGAAACCT 60.002 57.895 0.00 0.00 0.00 3.50
2770 2824 2.700773 GCATCGTGGGCAGGAAACC 61.701 63.158 0.00 0.00 0.00 3.27
2771 2825 2.877691 GCATCGTGGGCAGGAAAC 59.122 61.111 0.00 0.00 0.00 2.78
2772 2826 2.745884 CGCATCGTGGGCAGGAAA 60.746 61.111 0.00 0.00 0.00 3.13
2773 2827 4.776322 CCGCATCGTGGGCAGGAA 62.776 66.667 0.00 0.00 0.00 3.36
2780 2834 2.730066 TATCATGGGCCGCATCGTGG 62.730 60.000 0.00 0.00 36.10 4.94
2781 2835 0.884259 TTATCATGGGCCGCATCGTG 60.884 55.000 0.00 0.00 0.00 4.35
2782 2836 0.884704 GTTATCATGGGCCGCATCGT 60.885 55.000 0.00 0.00 0.00 3.73
2783 2837 1.577328 GGTTATCATGGGCCGCATCG 61.577 60.000 0.00 0.00 0.00 3.84
2784 2838 0.537143 TGGTTATCATGGGCCGCATC 60.537 55.000 0.00 0.00 0.00 3.91
2785 2839 0.106268 TTGGTTATCATGGGCCGCAT 60.106 50.000 0.00 0.00 0.00 4.73
2786 2840 1.034838 GTTGGTTATCATGGGCCGCA 61.035 55.000 0.00 0.00 0.00 5.69
2787 2841 1.733526 GTTGGTTATCATGGGCCGC 59.266 57.895 0.00 0.00 0.00 6.53
2788 2842 2.021722 CGTTGGTTATCATGGGCCG 58.978 57.895 0.00 0.00 0.00 6.13
2789 2843 1.034838 TGCGTTGGTTATCATGGGCC 61.035 55.000 0.00 0.00 0.00 5.80
2790 2844 0.100503 GTGCGTTGGTTATCATGGGC 59.899 55.000 0.00 0.00 0.00 5.36
2791 2845 1.750193 AGTGCGTTGGTTATCATGGG 58.250 50.000 0.00 0.00 0.00 4.00
2792 2846 3.531538 ACTAGTGCGTTGGTTATCATGG 58.468 45.455 0.00 0.00 0.00 3.66
2793 2847 5.106442 TGTACTAGTGCGTTGGTTATCATG 58.894 41.667 5.39 0.00 0.00 3.07
2794 2848 5.333299 TGTACTAGTGCGTTGGTTATCAT 57.667 39.130 5.39 0.00 0.00 2.45
2795 2849 4.787260 TGTACTAGTGCGTTGGTTATCA 57.213 40.909 5.39 0.00 0.00 2.15
2796 2850 4.030977 CGTTGTACTAGTGCGTTGGTTATC 59.969 45.833 5.39 0.00 0.00 1.75
2797 2851 3.922240 CGTTGTACTAGTGCGTTGGTTAT 59.078 43.478 5.39 0.00 0.00 1.89
2798 2852 3.307674 CGTTGTACTAGTGCGTTGGTTA 58.692 45.455 5.39 0.00 0.00 2.85
2799 2853 2.129607 CGTTGTACTAGTGCGTTGGTT 58.870 47.619 5.39 0.00 0.00 3.67
2800 2854 1.603678 CCGTTGTACTAGTGCGTTGGT 60.604 52.381 5.39 0.00 0.00 3.67
2801 2855 1.065358 CCGTTGTACTAGTGCGTTGG 58.935 55.000 5.39 3.24 0.00 3.77
2802 2856 1.065358 CCCGTTGTACTAGTGCGTTG 58.935 55.000 5.39 0.00 0.00 4.10
2803 2857 0.961019 TCCCGTTGTACTAGTGCGTT 59.039 50.000 5.39 0.00 0.00 4.84
2804 2858 0.961019 TTCCCGTTGTACTAGTGCGT 59.039 50.000 5.39 0.00 0.00 5.24
2805 2859 2.068837 TTTCCCGTTGTACTAGTGCG 57.931 50.000 5.39 4.94 0.00 5.34
2806 2860 3.656559 TCTTTTCCCGTTGTACTAGTGC 58.343 45.455 5.39 4.49 0.00 4.40
2807 2861 4.561606 CGATCTTTTCCCGTTGTACTAGTG 59.438 45.833 5.39 0.00 0.00 2.74
2808 2862 4.219288 ACGATCTTTTCCCGTTGTACTAGT 59.781 41.667 0.00 0.00 32.03 2.57
2809 2863 4.741342 ACGATCTTTTCCCGTTGTACTAG 58.259 43.478 0.00 0.00 32.03 2.57
2810 2864 4.460382 AGACGATCTTTTCCCGTTGTACTA 59.540 41.667 0.00 0.00 36.60 1.82
2811 2865 3.257624 AGACGATCTTTTCCCGTTGTACT 59.742 43.478 0.00 0.00 36.60 2.73
2812 2866 3.367025 CAGACGATCTTTTCCCGTTGTAC 59.633 47.826 0.00 0.00 36.60 2.90
2813 2867 3.006110 ACAGACGATCTTTTCCCGTTGTA 59.994 43.478 0.00 0.00 36.60 2.41
2814 2868 2.224209 ACAGACGATCTTTTCCCGTTGT 60.224 45.455 0.00 0.00 36.60 3.32
2815 2869 2.413837 ACAGACGATCTTTTCCCGTTG 58.586 47.619 0.00 0.00 36.60 4.10
2816 2870 2.833631 ACAGACGATCTTTTCCCGTT 57.166 45.000 0.00 0.00 36.60 4.44
2817 2871 3.582780 GTTACAGACGATCTTTTCCCGT 58.417 45.455 0.00 0.00 39.41 5.28
2830 2884 4.378030 CCGTATAAATCGCTCGTTACAGAC 59.622 45.833 0.00 0.00 0.00 3.51
2831 2885 4.530388 CCGTATAAATCGCTCGTTACAGA 58.470 43.478 0.00 0.00 0.00 3.41
2832 2886 3.119136 GCCGTATAAATCGCTCGTTACAG 59.881 47.826 0.00 0.00 0.00 2.74
2833 2887 3.044986 GCCGTATAAATCGCTCGTTACA 58.955 45.455 0.00 0.00 0.00 2.41
2834 2888 3.044986 TGCCGTATAAATCGCTCGTTAC 58.955 45.455 0.00 0.00 0.00 2.50
2835 2889 3.352554 TGCCGTATAAATCGCTCGTTA 57.647 42.857 0.00 0.00 0.00 3.18
2836 2890 2.212869 TGCCGTATAAATCGCTCGTT 57.787 45.000 0.00 0.00 0.00 3.85
2837 2891 1.856597 GTTGCCGTATAAATCGCTCGT 59.143 47.619 0.00 0.00 0.00 4.18
2838 2892 1.855978 TGTTGCCGTATAAATCGCTCG 59.144 47.619 0.00 0.00 0.00 5.03
2839 2893 3.120792 TCTGTTGCCGTATAAATCGCTC 58.879 45.455 0.00 0.00 0.00 5.03
2840 2894 3.173668 TCTGTTGCCGTATAAATCGCT 57.826 42.857 0.00 0.00 0.00 4.93
2841 2895 3.421826 CGATCTGTTGCCGTATAAATCGC 60.422 47.826 0.00 0.00 0.00 4.58
2842 2896 3.734231 ACGATCTGTTGCCGTATAAATCG 59.266 43.478 0.00 0.00 40.27 3.34
2843 2897 4.143597 CGACGATCTGTTGCCGTATAAATC 60.144 45.833 0.00 0.00 36.60 2.17
2844 2898 3.734231 CGACGATCTGTTGCCGTATAAAT 59.266 43.478 0.00 0.00 36.60 1.40
2845 2899 3.110358 CGACGATCTGTTGCCGTATAAA 58.890 45.455 0.00 0.00 36.60 1.40
2846 2900 2.723209 CGACGATCTGTTGCCGTATAA 58.277 47.619 0.00 0.00 36.60 0.98
2847 2901 2.394545 CGACGATCTGTTGCCGTATA 57.605 50.000 0.00 0.00 36.60 1.47
2848 2902 3.251817 CGACGATCTGTTGCCGTAT 57.748 52.632 0.00 0.00 36.60 3.06
2849 2903 4.777781 CGACGATCTGTTGCCGTA 57.222 55.556 0.00 0.00 36.60 4.02
2854 2908 3.859961 ACTGAAATAGCGACGATCTGTTG 59.140 43.478 0.00 0.00 34.83 3.33
2855 2909 4.111375 ACTGAAATAGCGACGATCTGTT 57.889 40.909 0.00 0.00 0.00 3.16
2856 2910 3.784701 ACTGAAATAGCGACGATCTGT 57.215 42.857 0.00 0.00 0.00 3.41
2857 2911 5.289675 AGAAAACTGAAATAGCGACGATCTG 59.710 40.000 0.00 0.00 0.00 2.90
2858 2912 5.411781 AGAAAACTGAAATAGCGACGATCT 58.588 37.500 0.00 0.00 0.00 2.75
2859 2913 5.517054 AGAGAAAACTGAAATAGCGACGATC 59.483 40.000 0.00 0.00 0.00 3.69
2860 2914 5.411781 AGAGAAAACTGAAATAGCGACGAT 58.588 37.500 0.00 0.00 0.00 3.73
2861 2915 4.806330 AGAGAAAACTGAAATAGCGACGA 58.194 39.130 0.00 0.00 0.00 4.20
2862 2916 5.517037 AAGAGAAAACTGAAATAGCGACG 57.483 39.130 0.00 0.00 0.00 5.12
2863 2917 7.117092 AGAGAAAGAGAAAACTGAAATAGCGAC 59.883 37.037 0.00 0.00 0.00 5.19
2864 2918 7.155328 AGAGAAAGAGAAAACTGAAATAGCGA 58.845 34.615 0.00 0.00 0.00 4.93
2865 2919 7.330700 AGAGAGAAAGAGAAAACTGAAATAGCG 59.669 37.037 0.00 0.00 0.00 4.26
2866 2920 8.546597 AGAGAGAAAGAGAAAACTGAAATAGC 57.453 34.615 0.00 0.00 0.00 2.97
2867 2921 9.150348 GGAGAGAGAAAGAGAAAACTGAAATAG 57.850 37.037 0.00 0.00 0.00 1.73
2868 2922 8.097662 GGGAGAGAGAAAGAGAAAACTGAAATA 58.902 37.037 0.00 0.00 0.00 1.40
2869 2923 6.939730 GGGAGAGAGAAAGAGAAAACTGAAAT 59.060 38.462 0.00 0.00 0.00 2.17
2870 2924 6.292150 GGGAGAGAGAAAGAGAAAACTGAAA 58.708 40.000 0.00 0.00 0.00 2.69
2871 2925 5.221742 GGGGAGAGAGAAAGAGAAAACTGAA 60.222 44.000 0.00 0.00 0.00 3.02
2872 2926 4.284746 GGGGAGAGAGAAAGAGAAAACTGA 59.715 45.833 0.00 0.00 0.00 3.41
2873 2927 4.564613 GGGGGAGAGAGAAAGAGAAAACTG 60.565 50.000 0.00 0.00 0.00 3.16
2874 2928 3.585289 GGGGGAGAGAGAAAGAGAAAACT 59.415 47.826 0.00 0.00 0.00 2.66
2875 2929 3.328050 TGGGGGAGAGAGAAAGAGAAAAC 59.672 47.826 0.00 0.00 0.00 2.43
2876 2930 3.328050 GTGGGGGAGAGAGAAAGAGAAAA 59.672 47.826 0.00 0.00 0.00 2.29
2877 2931 2.907042 GTGGGGGAGAGAGAAAGAGAAA 59.093 50.000 0.00 0.00 0.00 2.52
2878 2932 2.541466 GTGGGGGAGAGAGAAAGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
2879 2933 1.617263 CGTGGGGGAGAGAGAAAGAGA 60.617 57.143 0.00 0.00 0.00 3.10
2880 2934 0.820871 CGTGGGGGAGAGAGAAAGAG 59.179 60.000 0.00 0.00 0.00 2.85
2881 2935 0.114560 ACGTGGGGGAGAGAGAAAGA 59.885 55.000 0.00 0.00 0.00 2.52
2882 2936 0.533032 GACGTGGGGGAGAGAGAAAG 59.467 60.000 0.00 0.00 0.00 2.62
2883 2937 0.178944 TGACGTGGGGGAGAGAGAAA 60.179 55.000 0.00 0.00 0.00 2.52
2884 2938 0.178944 TTGACGTGGGGGAGAGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
2885 2939 0.041238 ATTGACGTGGGGGAGAGAGA 59.959 55.000 0.00 0.00 0.00 3.10
2886 2940 0.905357 AATTGACGTGGGGGAGAGAG 59.095 55.000 0.00 0.00 0.00 3.20
2887 2941 2.241281 TAATTGACGTGGGGGAGAGA 57.759 50.000 0.00 0.00 0.00 3.10
2888 2942 3.560636 AATAATTGACGTGGGGGAGAG 57.439 47.619 0.00 0.00 0.00 3.20
2889 2943 4.266714 GAAAATAATTGACGTGGGGGAGA 58.733 43.478 0.00 0.00 0.00 3.71
2890 2944 3.380320 GGAAAATAATTGACGTGGGGGAG 59.620 47.826 0.00 0.00 0.00 4.30
2891 2945 3.010808 AGGAAAATAATTGACGTGGGGGA 59.989 43.478 0.00 0.00 0.00 4.81
2892 2946 3.361786 AGGAAAATAATTGACGTGGGGG 58.638 45.455 0.00 0.00 0.00 5.40
2893 2947 5.592688 ACATAGGAAAATAATTGACGTGGGG 59.407 40.000 0.00 0.00 0.00 4.96
2894 2948 6.459573 CCACATAGGAAAATAATTGACGTGGG 60.460 42.308 0.00 0.00 41.22 4.61
2895 2949 6.494842 CCACATAGGAAAATAATTGACGTGG 58.505 40.000 0.00 0.00 41.22 4.94
2896 2950 5.971202 GCCACATAGGAAAATAATTGACGTG 59.029 40.000 0.00 0.00 41.22 4.49
2897 2951 5.650266 TGCCACATAGGAAAATAATTGACGT 59.350 36.000 0.00 0.00 41.22 4.34
2898 2952 6.130298 TGCCACATAGGAAAATAATTGACG 57.870 37.500 0.00 0.00 41.22 4.35
2899 2953 5.979517 GCTGCCACATAGGAAAATAATTGAC 59.020 40.000 0.00 0.00 41.22 3.18
2900 2954 5.893255 AGCTGCCACATAGGAAAATAATTGA 59.107 36.000 0.00 0.00 41.22 2.57
2901 2955 5.981315 CAGCTGCCACATAGGAAAATAATTG 59.019 40.000 0.00 0.00 41.22 2.32
2902 2956 5.658190 ACAGCTGCCACATAGGAAAATAATT 59.342 36.000 15.27 0.00 41.22 1.40
2903 2957 5.203528 ACAGCTGCCACATAGGAAAATAAT 58.796 37.500 15.27 0.00 41.22 1.28
2904 2958 4.599041 ACAGCTGCCACATAGGAAAATAA 58.401 39.130 15.27 0.00 41.22 1.40
2905 2959 4.235079 ACAGCTGCCACATAGGAAAATA 57.765 40.909 15.27 0.00 41.22 1.40
2906 2960 3.091633 ACAGCTGCCACATAGGAAAAT 57.908 42.857 15.27 0.00 41.22 1.82
2907 2961 2.584835 ACAGCTGCCACATAGGAAAA 57.415 45.000 15.27 0.00 41.22 2.29
2908 2962 2.584835 AACAGCTGCCACATAGGAAA 57.415 45.000 15.27 0.00 41.22 3.13
2909 2963 3.712016 TTAACAGCTGCCACATAGGAA 57.288 42.857 15.27 0.00 41.22 3.36
2910 2964 3.263170 TCTTTAACAGCTGCCACATAGGA 59.737 43.478 15.27 0.00 41.22 2.94
2911 2965 3.375299 GTCTTTAACAGCTGCCACATAGG 59.625 47.826 15.27 0.00 41.84 2.57
2912 2966 3.062639 CGTCTTTAACAGCTGCCACATAG 59.937 47.826 15.27 4.27 0.00 2.23
2913 2967 3.000041 CGTCTTTAACAGCTGCCACATA 59.000 45.455 15.27 0.00 0.00 2.29
2914 2968 1.806542 CGTCTTTAACAGCTGCCACAT 59.193 47.619 15.27 0.00 0.00 3.21
2915 2969 1.225855 CGTCTTTAACAGCTGCCACA 58.774 50.000 15.27 0.00 0.00 4.17
2916 2970 0.517316 CCGTCTTTAACAGCTGCCAC 59.483 55.000 15.27 0.46 0.00 5.01
2917 2971 1.234615 GCCGTCTTTAACAGCTGCCA 61.235 55.000 15.27 0.00 0.00 4.92
2918 2972 0.955919 AGCCGTCTTTAACAGCTGCC 60.956 55.000 15.27 0.00 40.18 4.85
2919 2973 2.544726 AGCCGTCTTTAACAGCTGC 58.455 52.632 15.27 0.00 40.18 5.25
2921 2975 1.344763 AGTCAGCCGTCTTTAACAGCT 59.655 47.619 0.00 0.00 42.48 4.24
2922 2976 1.461127 CAGTCAGCCGTCTTTAACAGC 59.539 52.381 0.00 0.00 0.00 4.40
2923 2977 2.755650 ACAGTCAGCCGTCTTTAACAG 58.244 47.619 0.00 0.00 0.00 3.16
2924 2978 2.902705 ACAGTCAGCCGTCTTTAACA 57.097 45.000 0.00 0.00 0.00 2.41
2925 2979 2.991866 GGTACAGTCAGCCGTCTTTAAC 59.008 50.000 0.00 0.00 0.00 2.01
2926 2980 2.028748 GGGTACAGTCAGCCGTCTTTAA 60.029 50.000 0.00 0.00 0.00 1.52
2927 2981 1.547372 GGGTACAGTCAGCCGTCTTTA 59.453 52.381 0.00 0.00 0.00 1.85
2928 2982 0.320697 GGGTACAGTCAGCCGTCTTT 59.679 55.000 0.00 0.00 0.00 2.52
2929 2983 0.542232 AGGGTACAGTCAGCCGTCTT 60.542 55.000 0.00 0.00 41.12 3.01
2930 2984 1.076906 AGGGTACAGTCAGCCGTCT 59.923 57.895 0.00 0.00 41.12 4.18
2931 2985 1.215647 CAGGGTACAGTCAGCCGTC 59.784 63.158 0.00 0.00 41.12 4.79
2932 2986 1.119574 AACAGGGTACAGTCAGCCGT 61.120 55.000 0.00 0.00 41.12 5.68
2933 2987 0.670546 CAACAGGGTACAGTCAGCCG 60.671 60.000 0.00 0.00 41.12 5.52
2934 2988 0.396811 ACAACAGGGTACAGTCAGCC 59.603 55.000 0.00 0.00 36.27 4.85
2935 2989 2.036733 TGTACAACAGGGTACAGTCAGC 59.963 50.000 0.00 0.00 46.32 4.26
2942 2996 1.280998 AGGGCATGTACAACAGGGTAC 59.719 52.381 0.00 0.00 43.08 3.34
2943 2997 1.663911 AGGGCATGTACAACAGGGTA 58.336 50.000 0.00 0.00 29.37 3.69
2944 2998 0.777446 AAGGGCATGTACAACAGGGT 59.223 50.000 0.00 0.00 29.37 4.34
2945 2999 2.026262 ACTAAGGGCATGTACAACAGGG 60.026 50.000 0.00 0.00 29.37 4.45
2946 3000 3.009723 CACTAAGGGCATGTACAACAGG 58.990 50.000 0.00 0.00 32.28 4.00
2947 3001 3.009723 CCACTAAGGGCATGTACAACAG 58.990 50.000 0.00 0.00 0.00 3.16
2948 3002 3.066291 CCACTAAGGGCATGTACAACA 57.934 47.619 0.00 0.00 0.00 3.33
2960 3014 3.265995 ACCAGTGTATTTCCCCACTAAGG 59.734 47.826 0.00 0.00 39.83 2.69
2961 3015 4.261801 CACCAGTGTATTTCCCCACTAAG 58.738 47.826 0.00 0.00 39.83 2.18
2962 3016 3.560453 GCACCAGTGTATTTCCCCACTAA 60.560 47.826 0.00 0.00 39.83 2.24
2963 3017 2.026636 GCACCAGTGTATTTCCCCACTA 60.027 50.000 0.00 0.00 39.83 2.74
2964 3018 1.271926 GCACCAGTGTATTTCCCCACT 60.272 52.381 0.00 0.00 42.47 4.00
3045 3106 9.991906 ACTTGATCATGTTTGATTTCAGAAAAT 57.008 25.926 8.37 0.00 42.73 1.82
3090 3151 2.736670 AAGCCATTCCCTAGCGATTT 57.263 45.000 0.00 0.00 0.00 2.17
3092 3153 1.490490 TGAAAGCCATTCCCTAGCGAT 59.510 47.619 0.00 0.00 37.22 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.