Multiple sequence alignment - TraesCS5D01G324600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G324600 chr5D 100.000 3693 0 0 1 3693 416260292 416256600 0.000000e+00 6820
1 TraesCS5D01G324600 chr5D 95.679 324 14 0 1 324 272143337 272143014 4.230000e-144 521
2 TraesCS5D01G324600 chr5D 93.023 129 4 3 483 608 434346820 434346946 2.270000e-42 183
3 TraesCS5D01G324600 chr5D 91.538 130 5 4 483 608 530834045 530834172 1.360000e-39 174
4 TraesCS5D01G324600 chr5D 91.935 124 6 2 483 603 92104388 92104510 1.760000e-38 171
5 TraesCS5D01G324600 chr5D 85.606 132 12 3 600 726 366736039 366736168 8.320000e-27 132
6 TraesCS5D01G324600 chr5D 78.286 175 37 1 2320 2494 126372457 126372284 1.080000e-20 111
7 TraesCS5D01G324600 chr5B 94.890 1820 79 6 925 2737 503116846 503115034 0.000000e+00 2833
8 TraesCS5D01G324600 chr5B 95.077 325 15 1 1 325 143299209 143298886 9.150000e-141 510
9 TraesCS5D01G324600 chr5B 89.706 204 19 1 727 928 503118609 503118406 3.660000e-65 259
10 TraesCS5D01G324600 chr5B 87.879 132 9 6 600 726 681615660 681615789 8.260000e-32 148
11 TraesCS5D01G324600 chr5A 94.867 1773 74 8 944 2710 529081201 529079440 0.000000e+00 2754
12 TraesCS5D01G324600 chr5A 88.954 851 45 14 2865 3676 529079156 529078316 0.000000e+00 1005
13 TraesCS5D01G324600 chr5A 93.220 177 12 0 315 491 110665419 110665243 1.020000e-65 261
14 TraesCS5D01G324600 chr5A 91.146 192 14 3 747 936 529081684 529081494 1.320000e-64 257
15 TraesCS5D01G324600 chr5A 96.203 79 2 1 2797 2875 529079355 529079278 1.080000e-25 128
16 TraesCS5D01G324600 chr7A 85.530 1548 188 25 1142 2686 8890853 8889339 0.000000e+00 1585
17 TraesCS5D01G324600 chr7A 95.238 168 7 1 317 484 569407028 569407194 7.860000e-67 265
18 TraesCS5D01G324600 chr7A 76.471 527 93 27 1148 1653 26823938 26823422 1.320000e-64 257
19 TraesCS5D01G324600 chr7A 87.923 207 21 4 317 521 689895172 689894968 1.330000e-59 241
20 TraesCS5D01G324600 chr7D 84.217 1546 199 26 1142 2686 8381921 8380420 0.000000e+00 1461
21 TraesCS5D01G324600 chr7D 83.822 1570 193 33 1139 2694 8454246 8452724 0.000000e+00 1435
22 TraesCS5D01G324600 chr7D 93.651 126 5 3 483 608 162999355 162999233 6.300000e-43 185
23 TraesCS5D01G324600 chr7D 72.983 533 116 19 2058 2582 26559132 26558620 1.060000e-35 161
24 TraesCS5D01G324600 chr4A 85.027 935 123 10 1738 2671 731380614 731381532 0.000000e+00 935
25 TraesCS5D01G324600 chr4A 76.008 471 92 17 1141 1594 710284819 710284353 1.330000e-54 224
26 TraesCS5D01G324600 chr4A 73.881 536 112 22 2058 2585 710676355 710675840 4.870000e-44 189
27 TraesCS5D01G324600 chr4A 80.769 182 35 0 2325 2506 703708499 703708680 3.840000e-30 143
28 TraesCS5D01G324600 chr4A 79.670 182 37 0 2325 2506 703606676 703606857 8.320000e-27 132
29 TraesCS5D01G324600 chr2A 76.682 1501 276 57 1141 2604 13004706 13003243 0.000000e+00 765
30 TraesCS5D01G324600 chr2A 75.659 1479 279 58 1142 2582 544331859 544333294 0.000000e+00 662
31 TraesCS5D01G324600 chr2A 83.475 472 57 14 1149 1605 13013262 13013727 1.590000e-113 420
32 TraesCS5D01G324600 chr2A 73.526 865 175 41 1768 2612 448153770 448154600 2.810000e-71 279
33 TraesCS5D01G324600 chr2A 72.847 836 179 31 1798 2609 13068365 13067554 3.680000e-60 243
34 TraesCS5D01G324600 chr2B 74.064 1496 306 62 1148 2605 19102541 19101090 4.200000e-149 538
35 TraesCS5D01G324600 chr2B 95.950 321 13 0 1 321 444527984 444528304 4.230000e-144 521
36 TraesCS5D01G324600 chr2B 76.586 867 153 32 1738 2582 481899864 481900702 7.330000e-117 431
37 TraesCS5D01G324600 chr2B 78.557 499 95 10 1149 1641 19075087 19074595 5.950000e-83 318
38 TraesCS5D01G324600 chr2B 78.947 456 89 6 1142 1595 18913698 18914148 1.670000e-78 303
39 TraesCS5D01G324600 chr2B 73.512 857 174 45 1777 2612 405262972 405263796 3.630000e-70 276
40 TraesCS5D01G324600 chr2B 85.612 139 12 5 600 732 599206832 599206696 4.970000e-29 139
41 TraesCS5D01G324600 chr1D 96.250 320 12 0 1 320 442053714 442053395 3.270000e-145 525
42 TraesCS5D01G324600 chr1D 95.950 321 13 0 1 321 201651458 201651138 4.230000e-144 521
43 TraesCS5D01G324600 chr1D 95.327 321 15 0 1 321 399776210 399776530 9.150000e-141 510
44 TraesCS5D01G324600 chr1D 95.783 166 6 1 320 485 490423153 490423317 2.190000e-67 267
45 TraesCS5D01G324600 chr1D 79.661 295 52 8 1145 1435 54927286 54926996 4.830000e-49 206
46 TraesCS5D01G324600 chr1D 96.032 126 3 2 483 608 399776529 399776652 1.740000e-48 204
47 TraesCS5D01G324600 chr1D 93.548 124 7 1 483 606 477865138 477865016 2.270000e-42 183
48 TraesCS5D01G324600 chr1D 92.248 129 5 3 483 608 201651139 201651013 1.050000e-40 178
49 TraesCS5D01G324600 chr1D 91.473 129 4 4 483 608 316300350 316300226 1.760000e-38 171
50 TraesCS5D01G324600 chr1D 91.870 123 4 4 483 599 441189056 441189178 2.280000e-37 167
51 TraesCS5D01G324600 chr1D 90.476 126 4 6 489 608 333493276 333493153 3.820000e-35 159
52 TraesCS5D01G324600 chr1D 88.636 132 7 6 483 608 442053394 442053265 1.780000e-33 154
53 TraesCS5D01G324600 chr1D 89.344 122 8 4 483 599 332943901 332944022 8.260000e-32 148
54 TraesCS5D01G324600 chr1D 85.185 135 13 3 597 726 332944049 332944181 8.320000e-27 132
55 TraesCS5D01G324600 chr1D 83.333 132 13 6 600 726 316300203 316300076 3.010000e-21 113
56 TraesCS5D01G324600 chr1D 81.890 127 15 5 600 726 65029442 65029560 2.350000e-17 100
57 TraesCS5D01G324600 chr3D 95.639 321 14 0 1 321 561766339 561766659 1.970000e-142 516
58 TraesCS5D01G324600 chr3D 92.632 190 11 2 305 492 361805879 361805691 1.690000e-68 270
59 TraesCS5D01G324600 chr3D 73.921 556 118 19 2060 2609 54984969 54984435 8.090000e-47 198
60 TraesCS5D01G324600 chr3D 93.023 129 4 3 483 608 39162193 39162067 2.270000e-42 183
61 TraesCS5D01G324600 chr3D 93.496 123 5 1 483 602 529138042 529138164 2.930000e-41 180
62 TraesCS5D01G324600 chr3D 85.926 135 12 3 597 726 231733368 231733500 1.790000e-28 137
63 TraesCS5D01G324600 chr3D 86.364 132 11 5 600 726 338545344 338545473 1.790000e-28 137
64 TraesCS5D01G324600 chr3D 86.364 132 10 6 600 726 560949616 560949488 1.790000e-28 137
65 TraesCS5D01G324600 chr3D 85.185 135 13 3 597 726 561766804 561766936 8.320000e-27 132
66 TraesCS5D01G324600 chr6B 95.342 322 15 0 3 324 132889211 132888890 2.540000e-141 512
67 TraesCS5D01G324600 chr6B 76.944 733 117 37 1821 2533 674327862 674328562 1.620000e-98 370
68 TraesCS5D01G324600 chr6B 77.559 508 108 5 1139 1641 612745133 612744627 5.990000e-78 302
69 TraesCS5D01G324600 chr6B 94.444 126 4 3 483 608 420768923 420769045 1.350000e-44 191
70 TraesCS5D01G324600 chr2D 95.327 321 15 0 1 321 579068351 579068671 9.150000e-141 510
71 TraesCS5D01G324600 chr2D 73.525 1492 310 71 1148 2604 337923087 337924528 4.290000e-134 488
72 TraesCS5D01G324600 chr2D 76.416 865 158 29 1738 2582 406261413 406262251 3.410000e-115 425
73 TraesCS5D01G324600 chr2D 82.553 470 65 10 1149 1605 12556622 12557087 7.430000e-107 398
74 TraesCS5D01G324600 chr2D 76.242 463 81 19 2067 2522 338330828 338330388 6.210000e-53 219
75 TraesCS5D01G324600 chr2D 96.825 126 2 2 483 608 310711754 310711877 3.740000e-50 209
76 TraesCS5D01G324600 chr6D 75.613 857 169 30 1740 2582 446103372 446104202 4.470000e-104 388
77 TraesCS5D01G324600 chr6D 93.798 129 3 3 483 608 377821509 377821635 4.870000e-44 189
78 TraesCS5D01G324600 chr6D 81.818 209 28 10 1148 1351 430401672 430401875 2.280000e-37 167
79 TraesCS5D01G324600 chr6D 89.922 129 8 3 483 608 156574196 156574070 1.060000e-35 161
80 TraesCS5D01G324600 chr6D 90.551 127 4 6 488 608 163344813 163344937 1.060000e-35 161
81 TraesCS5D01G324600 chr6D 80.583 206 27 13 1148 1347 430321458 430321656 2.970000e-31 147
82 TraesCS5D01G324600 chr6D 79.621 211 30 13 1148 1351 430318294 430318498 4.970000e-29 139
83 TraesCS5D01G324600 chr6D 85.606 132 12 3 600 726 372780420 372780549 8.320000e-27 132
84 TraesCS5D01G324600 chr6D 86.364 110 9 2 600 704 427238802 427238910 8.380000e-22 115
85 TraesCS5D01G324600 chrUn 80.000 495 86 7 1149 1641 108385233 108384750 1.630000e-93 353
86 TraesCS5D01G324600 chrUn 91.964 112 6 1 491 599 36389644 36389533 1.780000e-33 154
87 TraesCS5D01G324600 chrUn 91.964 112 6 1 491 599 304608439 304608328 1.780000e-33 154
88 TraesCS5D01G324600 chr6A 75.638 784 135 41 1821 2582 592817843 592817094 4.570000e-89 339
89 TraesCS5D01G324600 chr6A 74.627 737 127 40 1821 2533 592813667 592812967 1.690000e-68 270
90 TraesCS5D01G324600 chr6A 90.576 191 16 2 316 505 78517708 78517519 6.120000e-63 252
91 TraesCS5D01G324600 chr6A 80.603 232 30 13 1148 1370 576911120 576911345 8.200000e-37 165
92 TraesCS5D01G324600 chr1A 76.998 513 103 13 1145 1649 53997354 53996849 2.810000e-71 279
93 TraesCS5D01G324600 chr1A 95.266 169 8 0 317 485 74014237 74014405 6.080000e-68 268
94 TraesCS5D01G324600 chr1A 94.706 170 9 0 317 486 448923783 448923952 7.860000e-67 265
95 TraesCS5D01G324600 chr1A 81.061 132 18 4 600 726 273512677 273512548 8.440000e-17 99
96 TraesCS5D01G324600 chr3B 93.785 177 9 2 320 495 362481276 362481101 7.860000e-67 265
97 TraesCS5D01G324600 chr3B 87.121 132 10 3 600 726 61541711 61541840 3.840000e-30 143
98 TraesCS5D01G324600 chr1B 76.349 482 108 5 1145 1623 90544309 90543831 1.700000e-63 254
99 TraesCS5D01G324600 chr1B 81.481 162 28 2 2350 2511 90406368 90406527 8.320000e-27 132
100 TraesCS5D01G324600 chr4D 96.581 117 3 1 483 599 354826958 354826843 3.760000e-45 193
101 TraesCS5D01G324600 chr4D 86.364 132 11 3 600 726 37496899 37496770 1.790000e-28 137
102 TraesCS5D01G324600 chr4D 83.688 141 15 5 600 735 47501221 47501084 3.870000e-25 126
103 TraesCS5D01G324600 chr4B 87.402 127 8 5 600 726 588697717 588697599 4.970000e-29 139
104 TraesCS5D01G324600 chr4B 85.211 142 13 4 600 736 598453252 598453390 4.970000e-29 139
105 TraesCS5D01G324600 chr4B 86.364 132 11 3 600 726 520269524 520269653 1.790000e-28 137
106 TraesCS5D01G324600 chr4B 85.156 128 12 5 600 722 638126738 638126863 1.390000e-24 124
107 TraesCS5D01G324600 chr7B 86.364 132 11 4 600 726 180481397 180481526 1.790000e-28 137
108 TraesCS5D01G324600 chr7B 87.755 98 8 4 2334 2429 444292484 444292579 1.080000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G324600 chr5D 416256600 416260292 3692 True 6820.0 6820 100.0000 1 3693 1 chr5D.!!$R3 3692
1 TraesCS5D01G324600 chr5B 503115034 503118609 3575 True 1546.0 2833 92.2980 727 2737 2 chr5B.!!$R2 2010
2 TraesCS5D01G324600 chr5A 529078316 529081684 3368 True 1036.0 2754 92.7925 747 3676 4 chr5A.!!$R2 2929
3 TraesCS5D01G324600 chr7A 8889339 8890853 1514 True 1585.0 1585 85.5300 1142 2686 1 chr7A.!!$R1 1544
4 TraesCS5D01G324600 chr7A 26823422 26823938 516 True 257.0 257 76.4710 1148 1653 1 chr7A.!!$R2 505
5 TraesCS5D01G324600 chr7D 8380420 8381921 1501 True 1461.0 1461 84.2170 1142 2686 1 chr7D.!!$R1 1544
6 TraesCS5D01G324600 chr7D 8452724 8454246 1522 True 1435.0 1435 83.8220 1139 2694 1 chr7D.!!$R2 1555
7 TraesCS5D01G324600 chr4A 731380614 731381532 918 False 935.0 935 85.0270 1738 2671 1 chr4A.!!$F3 933
8 TraesCS5D01G324600 chr2A 13003243 13004706 1463 True 765.0 765 76.6820 1141 2604 1 chr2A.!!$R1 1463
9 TraesCS5D01G324600 chr2A 544331859 544333294 1435 False 662.0 662 75.6590 1142 2582 1 chr2A.!!$F3 1440
10 TraesCS5D01G324600 chr2A 448153770 448154600 830 False 279.0 279 73.5260 1768 2612 1 chr2A.!!$F2 844
11 TraesCS5D01G324600 chr2A 13067554 13068365 811 True 243.0 243 72.8470 1798 2609 1 chr2A.!!$R2 811
12 TraesCS5D01G324600 chr2B 19101090 19102541 1451 True 538.0 538 74.0640 1148 2605 1 chr2B.!!$R2 1457
13 TraesCS5D01G324600 chr2B 481899864 481900702 838 False 431.0 431 76.5860 1738 2582 1 chr2B.!!$F4 844
14 TraesCS5D01G324600 chr2B 405262972 405263796 824 False 276.0 276 73.5120 1777 2612 1 chr2B.!!$F2 835
15 TraesCS5D01G324600 chr3D 561766339 561766936 597 False 324.0 516 90.4120 1 726 2 chr3D.!!$F4 725
16 TraesCS5D01G324600 chr6B 674327862 674328562 700 False 370.0 370 76.9440 1821 2533 1 chr6B.!!$F2 712
17 TraesCS5D01G324600 chr6B 612744627 612745133 506 True 302.0 302 77.5590 1139 1641 1 chr6B.!!$R2 502
18 TraesCS5D01G324600 chr2D 337923087 337924528 1441 False 488.0 488 73.5250 1148 2604 1 chr2D.!!$F3 1456
19 TraesCS5D01G324600 chr2D 406261413 406262251 838 False 425.0 425 76.4160 1738 2582 1 chr2D.!!$F4 844
20 TraesCS5D01G324600 chr6D 446103372 446104202 830 False 388.0 388 75.6130 1740 2582 1 chr6D.!!$F6 842
21 TraesCS5D01G324600 chr6A 592812967 592817843 4876 True 304.5 339 75.1325 1821 2582 2 chr6A.!!$R2 761
22 TraesCS5D01G324600 chr1A 53996849 53997354 505 True 279.0 279 76.9980 1145 1649 1 chr1A.!!$R1 504


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 706 0.027063 ACAAAAGCGTCGTCCGTTTG 59.973 50.0 8.77 8.77 39.19 2.93 F
1111 2964 0.320374 AAGCTCCATCGACGAACCAA 59.680 50.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 3478 0.528684 CGATGAGAGGGCGGAAGTTC 60.529 60.000 0.0 0.0 0.00 3.01 R
2874 9089 1.201647 GGCTCACTACAACAGCTACGA 59.798 52.381 0.0 0.0 33.38 3.43 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.572085 CCTGGAGCACGCAGAAACTG 61.572 60.000 0.00 0.00 34.12 3.16
68 69 1.571460 GAGCACGCAGAAACTGTGG 59.429 57.895 15.06 6.79 45.11 4.17
82 83 0.979665 CTGTGGGAGGTGATGACTGT 59.020 55.000 0.00 0.00 0.00 3.55
137 138 1.153628 GCGCCTGGAACGTCTGTAT 60.154 57.895 0.00 0.00 0.00 2.29
146 147 3.118775 TGGAACGTCTGTATGATCAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
177 178 1.168714 GGGTGAGAATGTTGTGCCTC 58.831 55.000 0.00 0.00 0.00 4.70
179 180 2.229792 GGTGAGAATGTTGTGCCTCAA 58.770 47.619 0.00 0.00 37.40 3.02
197 198 0.324943 AACATGGAGTAGCGGCAACT 59.675 50.000 1.45 0.00 0.00 3.16
204 205 2.488153 GGAGTAGCGGCAACTTTTGAAT 59.512 45.455 1.45 0.00 0.00 2.57
254 255 1.606668 GATTGGGAAACTCACGTGCAA 59.393 47.619 11.67 7.83 0.00 4.08
305 306 2.233431 GGCTCATGTTGGCAACCAATAA 59.767 45.455 26.31 8.83 45.80 1.40
329 330 5.593679 TGTATCTTCTTTTACTCCCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
330 331 5.021458 TGTATCTTCTTTTACTCCCTCCGT 58.979 41.667 0.00 0.00 0.00 4.69
331 332 5.482878 TGTATCTTCTTTTACTCCCTCCGTT 59.517 40.000 0.00 0.00 0.00 4.44
332 333 4.532314 TCTTCTTTTACTCCCTCCGTTC 57.468 45.455 0.00 0.00 0.00 3.95
333 334 3.260128 TCTTCTTTTACTCCCTCCGTTCC 59.740 47.826 0.00 0.00 0.00 3.62
334 335 2.898662 TCTTTTACTCCCTCCGTTCCT 58.101 47.619 0.00 0.00 0.00 3.36
335 336 4.051661 TCTTTTACTCCCTCCGTTCCTA 57.948 45.455 0.00 0.00 0.00 2.94
336 337 4.419282 TCTTTTACTCCCTCCGTTCCTAA 58.581 43.478 0.00 0.00 0.00 2.69
337 338 4.840115 TCTTTTACTCCCTCCGTTCCTAAA 59.160 41.667 0.00 0.00 0.00 1.85
338 339 5.486419 TCTTTTACTCCCTCCGTTCCTAAAT 59.514 40.000 0.00 0.00 0.00 1.40
339 340 6.669154 TCTTTTACTCCCTCCGTTCCTAAATA 59.331 38.462 0.00 0.00 0.00 1.40
340 341 7.346436 TCTTTTACTCCCTCCGTTCCTAAATAT 59.654 37.037 0.00 0.00 0.00 1.28
341 342 7.441903 TTTACTCCCTCCGTTCCTAAATATT 57.558 36.000 0.00 0.00 0.00 1.28
342 343 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
343 344 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
344 345 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
345 346 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
346 347 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
347 348 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
348 349 6.260271 CCCTCCGTTCCTAAATATTTGTCTTC 59.740 42.308 11.05 0.00 0.00 2.87
349 350 6.260271 CCTCCGTTCCTAAATATTTGTCTTCC 59.740 42.308 11.05 0.00 0.00 3.46
350 351 6.954232 TCCGTTCCTAAATATTTGTCTTCCT 58.046 36.000 11.05 0.00 0.00 3.36
351 352 8.081517 TCCGTTCCTAAATATTTGTCTTCCTA 57.918 34.615 11.05 0.00 0.00 2.94
352 353 8.202137 TCCGTTCCTAAATATTTGTCTTCCTAG 58.798 37.037 11.05 0.00 0.00 3.02
353 354 8.202137 CCGTTCCTAAATATTTGTCTTCCTAGA 58.798 37.037 11.05 0.00 0.00 2.43
368 369 7.067496 TCTTCCTAGACATTTCAAACAGACT 57.933 36.000 0.00 0.00 0.00 3.24
369 370 6.931281 TCTTCCTAGACATTTCAAACAGACTG 59.069 38.462 0.00 0.00 0.00 3.51
370 371 4.997395 TCCTAGACATTTCAAACAGACTGC 59.003 41.667 1.25 0.00 0.00 4.40
371 372 4.154918 CCTAGACATTTCAAACAGACTGCC 59.845 45.833 1.25 0.00 0.00 4.85
372 373 3.554934 AGACATTTCAAACAGACTGCCA 58.445 40.909 1.25 0.00 0.00 4.92
373 374 3.316308 AGACATTTCAAACAGACTGCCAC 59.684 43.478 1.25 0.00 0.00 5.01
374 375 3.023119 ACATTTCAAACAGACTGCCACA 58.977 40.909 1.25 0.00 0.00 4.17
375 376 3.638160 ACATTTCAAACAGACTGCCACAT 59.362 39.130 1.25 0.00 0.00 3.21
376 377 4.826733 ACATTTCAAACAGACTGCCACATA 59.173 37.500 1.25 0.00 0.00 2.29
377 378 4.829064 TTTCAAACAGACTGCCACATAC 57.171 40.909 1.25 0.00 0.00 2.39
378 379 3.483808 TCAAACAGACTGCCACATACA 57.516 42.857 1.25 0.00 0.00 2.29
379 380 3.402110 TCAAACAGACTGCCACATACAG 58.598 45.455 1.25 0.00 41.08 2.74
380 381 3.070878 TCAAACAGACTGCCACATACAGA 59.929 43.478 1.25 0.00 38.55 3.41
381 382 3.988976 AACAGACTGCCACATACAGAT 57.011 42.857 1.25 0.00 38.55 2.90
382 383 3.257469 ACAGACTGCCACATACAGATG 57.743 47.619 1.25 0.00 38.55 2.90
384 385 3.769300 ACAGACTGCCACATACAGATGTA 59.231 43.478 1.25 0.00 44.82 2.29
385 386 4.406972 ACAGACTGCCACATACAGATGTAT 59.593 41.667 1.25 0.00 44.82 2.29
424 425 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
425 426 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
426 427 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
427 428 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
428 429 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
429 430 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
430 431 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
431 432 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
432 433 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
433 434 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
434 435 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
435 436 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
436 437 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
437 438 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
438 439 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
439 440 7.112122 TCATTTTGCTCCATATGTAGTCACTT 58.888 34.615 1.24 0.00 0.00 3.16
440 441 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
441 442 4.406648 TGCTCCATATGTAGTCACTTGG 57.593 45.455 1.24 0.00 33.09 3.61
442 443 3.774766 TGCTCCATATGTAGTCACTTGGT 59.225 43.478 1.24 0.00 33.38 3.67
443 444 4.122776 GCTCCATATGTAGTCACTTGGTG 58.877 47.826 1.24 0.00 33.38 4.17
444 445 4.141937 GCTCCATATGTAGTCACTTGGTGA 60.142 45.833 1.24 0.00 40.50 4.02
445 446 5.626809 GCTCCATATGTAGTCACTTGGTGAA 60.627 44.000 1.24 0.00 44.49 3.18
446 447 6.367374 TCCATATGTAGTCACTTGGTGAAA 57.633 37.500 1.24 0.00 44.49 2.69
447 448 6.957631 TCCATATGTAGTCACTTGGTGAAAT 58.042 36.000 1.24 0.00 44.49 2.17
448 449 8.084985 TCCATATGTAGTCACTTGGTGAAATA 57.915 34.615 1.24 0.00 44.49 1.40
449 450 8.713971 TCCATATGTAGTCACTTGGTGAAATAT 58.286 33.333 1.24 1.65 44.49 1.28
450 451 8.993121 CCATATGTAGTCACTTGGTGAAATATC 58.007 37.037 1.24 0.00 44.49 1.63
451 452 9.770097 CATATGTAGTCACTTGGTGAAATATCT 57.230 33.333 1.77 0.00 44.49 1.98
454 455 8.589701 TGTAGTCACTTGGTGAAATATCTAGA 57.410 34.615 0.00 0.00 44.49 2.43
455 456 9.031537 TGTAGTCACTTGGTGAAATATCTAGAA 57.968 33.333 0.00 0.00 44.49 2.10
456 457 9.871238 GTAGTCACTTGGTGAAATATCTAGAAA 57.129 33.333 0.00 0.00 44.49 2.52
458 459 8.816894 AGTCACTTGGTGAAATATCTAGAAAGA 58.183 33.333 0.00 0.00 44.49 2.52
459 460 8.874816 GTCACTTGGTGAAATATCTAGAAAGAC 58.125 37.037 0.00 0.00 44.49 3.01
460 461 8.593679 TCACTTGGTGAAATATCTAGAAAGACA 58.406 33.333 0.00 0.00 39.78 3.41
461 462 9.219603 CACTTGGTGAAATATCTAGAAAGACAA 57.780 33.333 0.00 0.00 35.23 3.18
462 463 9.793259 ACTTGGTGAAATATCTAGAAAGACAAA 57.207 29.630 0.00 0.00 33.57 2.83
475 476 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
476 477 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
477 478 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
478 479 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
479 480 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
480 481 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
481 482 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
482 483 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
483 484 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
484 485 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
485 486 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
486 487 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
487 488 4.748277 TTAGGAACGGAGGGAGTATTTG 57.252 45.455 0.00 0.00 0.00 2.32
525 526 8.749841 TGTGAAACATTTTTATTTGTATCCGG 57.250 30.769 0.00 0.00 45.67 5.14
540 541 7.775397 TTGTATCCGGCTTGTAAAACTATAC 57.225 36.000 0.00 0.00 0.00 1.47
574 578 5.965334 CGGTGAACTATGTTTGACAATATGC 59.035 40.000 0.00 0.00 0.00 3.14
589 593 7.097834 TGACAATATGCTTGAATGCAAATCAA 58.902 30.769 15.13 15.13 46.61 2.57
602 606 9.327628 TGAATGCAAATCAATGTAATATTTGGG 57.672 29.630 3.28 0.00 39.74 4.12
603 607 9.328845 GAATGCAAATCAATGTAATATTTGGGT 57.671 29.630 0.00 0.00 39.74 4.51
604 608 8.891671 ATGCAAATCAATGTAATATTTGGGTC 57.108 30.769 0.00 0.00 39.74 4.46
605 609 6.977502 TGCAAATCAATGTAATATTTGGGTCG 59.022 34.615 0.00 0.00 39.74 4.79
606 610 6.420604 GCAAATCAATGTAATATTTGGGTCGG 59.579 38.462 0.00 0.00 39.74 4.79
607 611 5.705609 ATCAATGTAATATTTGGGTCGGC 57.294 39.130 0.00 0.00 0.00 5.54
608 612 3.562141 TCAATGTAATATTTGGGTCGGCG 59.438 43.478 0.00 0.00 0.00 6.46
609 613 2.695127 TGTAATATTTGGGTCGGCGT 57.305 45.000 6.85 0.00 0.00 5.68
610 614 2.281517 TGTAATATTTGGGTCGGCGTG 58.718 47.619 6.85 0.00 0.00 5.34
611 615 2.282407 GTAATATTTGGGTCGGCGTGT 58.718 47.619 6.85 0.00 0.00 4.49
612 616 1.828979 AATATTTGGGTCGGCGTGTT 58.171 45.000 6.85 0.00 0.00 3.32
613 617 2.695127 ATATTTGGGTCGGCGTGTTA 57.305 45.000 6.85 0.00 0.00 2.41
614 618 2.012937 TATTTGGGTCGGCGTGTTAG 57.987 50.000 6.85 0.00 0.00 2.34
615 619 0.675522 ATTTGGGTCGGCGTGTTAGG 60.676 55.000 6.85 0.00 0.00 2.69
616 620 3.887335 TTGGGTCGGCGTGTTAGGC 62.887 63.158 6.85 0.00 0.00 3.93
623 627 3.788766 GCGTGTTAGGCCGTGCTG 61.789 66.667 0.00 0.00 0.00 4.41
624 628 3.788766 CGTGTTAGGCCGTGCTGC 61.789 66.667 0.00 0.00 0.00 5.25
634 638 3.055719 CGTGCTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
635 639 2.877691 GTGCTGCCGACCCAAATC 59.122 61.111 0.00 0.00 0.00 2.17
636 640 1.675641 GTGCTGCCGACCCAAATCT 60.676 57.895 0.00 0.00 0.00 2.40
637 641 0.392461 GTGCTGCCGACCCAAATCTA 60.392 55.000 0.00 0.00 0.00 1.98
638 642 0.326595 TGCTGCCGACCCAAATCTAA 59.673 50.000 0.00 0.00 0.00 2.10
639 643 1.271652 TGCTGCCGACCCAAATCTAAA 60.272 47.619 0.00 0.00 0.00 1.85
640 644 1.816224 GCTGCCGACCCAAATCTAAAA 59.184 47.619 0.00 0.00 0.00 1.52
641 645 2.159379 GCTGCCGACCCAAATCTAAAAG 60.159 50.000 0.00 0.00 0.00 2.27
642 646 3.343617 CTGCCGACCCAAATCTAAAAGA 58.656 45.455 0.00 0.00 0.00 2.52
643 647 3.343617 TGCCGACCCAAATCTAAAAGAG 58.656 45.455 0.00 0.00 0.00 2.85
644 648 2.683362 GCCGACCCAAATCTAAAAGAGG 59.317 50.000 0.00 0.00 0.00 3.69
645 649 3.279434 CCGACCCAAATCTAAAAGAGGG 58.721 50.000 0.00 0.00 42.07 4.30
646 650 2.683362 CGACCCAAATCTAAAAGAGGGC 59.317 50.000 0.00 0.00 39.97 5.19
647 651 2.683362 GACCCAAATCTAAAAGAGGGCG 59.317 50.000 0.00 0.00 39.97 6.13
648 652 2.024414 CCCAAATCTAAAAGAGGGCGG 58.976 52.381 0.00 0.00 0.00 6.13
649 653 1.405463 CCAAATCTAAAAGAGGGCGGC 59.595 52.381 0.00 0.00 0.00 6.53
650 654 1.405463 CAAATCTAAAAGAGGGCGGCC 59.595 52.381 22.67 22.67 0.00 6.13
651 655 0.463833 AATCTAAAAGAGGGCGGCCG 60.464 55.000 24.05 24.05 0.00 6.13
652 656 2.942648 ATCTAAAAGAGGGCGGCCGC 62.943 60.000 41.63 41.63 41.06 6.53
679 683 2.434359 GGCCGACCCGACAAAGAG 60.434 66.667 0.00 0.00 0.00 2.85
680 684 3.119096 GCCGACCCGACAAAGAGC 61.119 66.667 0.00 0.00 0.00 4.09
681 685 2.809601 CCGACCCGACAAAGAGCG 60.810 66.667 0.00 0.00 0.00 5.03
682 686 2.809601 CGACCCGACAAAGAGCGG 60.810 66.667 0.00 0.00 46.80 5.52
689 693 2.300623 CGACAAAGAGCGGACAAAAG 57.699 50.000 0.00 0.00 0.00 2.27
690 694 1.660333 CGACAAAGAGCGGACAAAAGC 60.660 52.381 0.00 0.00 0.00 3.51
691 695 0.307760 ACAAAGAGCGGACAAAAGCG 59.692 50.000 0.00 0.00 38.61 4.68
692 696 0.307760 CAAAGAGCGGACAAAAGCGT 59.692 50.000 0.00 0.00 38.61 5.07
693 697 0.586802 AAAGAGCGGACAAAAGCGTC 59.413 50.000 0.00 0.00 38.61 5.19
694 698 1.557443 AAGAGCGGACAAAAGCGTCG 61.557 55.000 0.00 0.00 36.73 5.12
695 699 2.279918 AGCGGACAAAAGCGTCGT 60.280 55.556 0.00 0.00 36.73 4.34
696 700 2.170273 GCGGACAAAAGCGTCGTC 59.830 61.111 0.00 0.00 36.73 4.20
697 701 2.851104 CGGACAAAAGCGTCGTCC 59.149 61.111 10.10 10.10 44.79 4.79
698 702 2.851104 GGACAAAAGCGTCGTCCG 59.149 61.111 5.63 0.00 39.86 4.79
699 703 1.952635 GGACAAAAGCGTCGTCCGT 60.953 57.895 5.63 0.00 39.86 4.69
700 704 1.493134 GGACAAAAGCGTCGTCCGTT 61.493 55.000 5.63 0.00 39.86 4.44
701 705 0.302589 GACAAAAGCGTCGTCCGTTT 59.697 50.000 0.00 0.00 42.10 3.60
702 706 0.027063 ACAAAAGCGTCGTCCGTTTG 59.973 50.000 8.77 8.77 39.19 2.93
703 707 0.656205 CAAAAGCGTCGTCCGTTTGG 60.656 55.000 0.00 0.00 39.19 3.28
704 708 0.810823 AAAAGCGTCGTCCGTTTGGA 60.811 50.000 0.00 0.00 39.19 3.53
712 716 4.104183 TCCGTTTGGATCGGGCCC 62.104 66.667 13.57 13.57 46.82 5.80
714 718 4.770874 CGTTTGGATCGGGCCCGT 62.771 66.667 41.57 29.26 40.74 5.28
715 719 2.360726 GTTTGGATCGGGCCCGTT 60.361 61.111 41.57 34.87 40.74 4.44
716 720 2.360600 TTTGGATCGGGCCCGTTG 60.361 61.111 41.57 17.04 40.74 4.10
717 721 3.929334 TTTGGATCGGGCCCGTTGG 62.929 63.158 41.57 16.62 40.74 3.77
719 723 4.547367 GGATCGGGCCCGTTGGAG 62.547 72.222 41.57 15.37 40.74 3.86
720 724 3.782443 GATCGGGCCCGTTGGAGT 61.782 66.667 41.57 21.87 40.74 3.85
721 725 3.325201 GATCGGGCCCGTTGGAGTT 62.325 63.158 41.57 19.24 40.74 3.01
722 726 3.622060 ATCGGGCCCGTTGGAGTTG 62.622 63.158 41.57 12.90 40.74 3.16
724 728 4.660938 GGGCCCGTTGGAGTTGCT 62.661 66.667 5.69 0.00 0.00 3.91
725 729 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
744 748 1.743321 CGAGGATGACCAGGAGAGCC 61.743 65.000 0.00 0.00 38.94 4.70
823 827 2.306341 ATCCGACACTCAATCTGCTG 57.694 50.000 0.00 0.00 0.00 4.41
879 883 3.006217 TCTGATCTGCCAATAGGATCACG 59.994 47.826 0.00 0.00 40.26 4.35
883 887 2.766263 TCTGCCAATAGGATCACGAGTT 59.234 45.455 0.00 0.00 36.89 3.01
885 889 2.766263 TGCCAATAGGATCACGAGTTCT 59.234 45.455 0.00 0.00 36.89 3.01
906 910 6.207691 TCTTCTCATCATTCGTGTCACATA 57.792 37.500 3.42 0.00 0.00 2.29
912 916 8.239998 TCTCATCATTCGTGTCACATATCTATC 58.760 37.037 3.42 0.00 0.00 2.08
915 919 7.930513 TCATTCGTGTCACATATCTATCAAC 57.069 36.000 3.42 0.00 0.00 3.18
923 927 5.694006 GTCACATATCTATCAACTCACAGCC 59.306 44.000 0.00 0.00 0.00 4.85
1000 2846 4.440802 CGTTGGAAATTCCCAAGTCAAACA 60.441 41.667 9.87 0.00 45.95 2.83
1001 2847 5.610398 GTTGGAAATTCCCAAGTCAAACAT 58.390 37.500 9.87 0.00 45.95 2.71
1035 2884 5.579904 CGCTGCATATTGTATCAGCTATCTT 59.420 40.000 10.70 0.00 46.95 2.40
1040 2889 6.036953 GCATATTGTATCAGCTATCTTCTGGC 59.963 42.308 0.00 0.00 32.63 4.85
1045 2894 2.470990 TCAGCTATCTTCTGGCTTCCA 58.529 47.619 0.00 0.00 40.15 3.53
1060 2909 4.069232 CCAGTCTTCGCCCGCTGA 62.069 66.667 0.00 0.00 0.00 4.26
1074 2923 2.860735 CCCGCTGAGTTTCTTATTCGAG 59.139 50.000 0.00 0.00 0.00 4.04
1102 2955 2.227388 ACAAAGCAAGAAAGCTCCATCG 59.773 45.455 0.00 0.00 45.89 3.84
1111 2964 0.320374 AAGCTCCATCGACGAACCAA 59.680 50.000 0.00 0.00 0.00 3.67
1275 3128 1.661480 CACCGAGTACAACCACCGA 59.339 57.895 0.00 0.00 0.00 4.69
1437 3301 0.332972 GCCTCCCCCACTTCAAGAAT 59.667 55.000 0.00 0.00 0.00 2.40
1596 3478 2.426023 GGCTACATGGGCTACCGG 59.574 66.667 0.00 0.00 40.75 5.28
1695 3627 5.819825 AATTTTGACTCGGCCTAAATCTC 57.180 39.130 0.00 0.00 0.00 2.75
1934 3914 2.684881 GTCATCATCAACACCATGGACC 59.315 50.000 21.47 0.00 0.00 4.46
2674 8863 1.741706 CTCATCCATGGTGTGTTGCTC 59.258 52.381 12.58 0.00 0.00 4.26
2715 8904 4.310769 CTTCTCTTTTCTTTCCAGCTCGA 58.689 43.478 0.00 0.00 0.00 4.04
2719 8908 3.056821 TCTTTTCTTTCCAGCTCGATCGA 60.057 43.478 18.32 18.32 0.00 3.59
2723 8912 0.606096 TTTCCAGCTCGATCGACCAA 59.394 50.000 15.15 0.00 0.00 3.67
2737 8926 1.731709 CGACCAATGATCGAGCAAACA 59.268 47.619 7.76 0.00 42.25 2.83
2750 8939 0.096976 GCAAACATGATCGGGACACG 59.903 55.000 0.00 0.00 46.11 4.49
2830 9045 0.517316 GGTTTGCACGCTCCTAACAG 59.483 55.000 0.00 0.00 0.00 3.16
2870 9085 3.542712 CGAAATGGGATTCGCTAATGG 57.457 47.619 2.19 0.00 44.69 3.16
2874 9089 5.660460 GAAATGGGATTCGCTAATGGTTTT 58.340 37.500 2.19 0.00 0.00 2.43
2892 9238 4.150098 GGTTTTCGTAGCTGTTGTAGTGAG 59.850 45.833 0.00 0.00 0.00 3.51
2895 9241 1.736032 CGTAGCTGTTGTAGTGAGCCC 60.736 57.143 0.00 0.00 32.86 5.19
2899 9245 1.614317 GCTGTTGTAGTGAGCCCCATT 60.614 52.381 0.00 0.00 0.00 3.16
2946 9292 6.592607 GTGTGGTCCGTCTATTCAAAAGATAA 59.407 38.462 0.00 0.00 0.00 1.75
3039 9388 7.817418 TGGTTTACTTGATTGATATAAGGGC 57.183 36.000 0.00 0.00 0.00 5.19
3040 9389 7.582719 TGGTTTACTTGATTGATATAAGGGCT 58.417 34.615 0.00 0.00 0.00 5.19
3041 9390 7.719633 TGGTTTACTTGATTGATATAAGGGCTC 59.280 37.037 0.00 0.00 0.00 4.70
3042 9391 7.095187 GGTTTACTTGATTGATATAAGGGCTCG 60.095 40.741 0.00 0.00 0.00 5.03
3061 9424 4.328712 GCTCGGAGAAGAATGAAAGAACTC 59.671 45.833 9.69 0.00 34.09 3.01
3089 9452 3.192466 GCCAACCAATCTGCATTCATTC 58.808 45.455 0.00 0.00 0.00 2.67
3091 9454 4.178540 CCAACCAATCTGCATTCATTCAC 58.821 43.478 0.00 0.00 0.00 3.18
3116 9479 7.968405 ACGGCAGAAATTTACATGATAACTTTC 59.032 33.333 0.00 10.29 0.00 2.62
3145 9508 3.133542 TGAGACATGTGGCTAGAAGGATG 59.866 47.826 1.15 0.00 30.09 3.51
3173 9557 4.319766 CGCGGAAGATTGATATTTCAAGGG 60.320 45.833 0.00 0.00 44.75 3.95
3195 9579 0.034337 TTTGACTCACTACCGTGGCC 59.966 55.000 0.00 0.00 41.53 5.36
3216 9600 4.218417 GCCTTTCCTCTTTGAGTTATTGCA 59.782 41.667 0.00 0.00 0.00 4.08
3254 9638 3.244976 CAAAATTTCACTCGATGGGTGC 58.755 45.455 0.00 0.00 34.97 5.01
3260 9644 2.083774 TCACTCGATGGGTGCAAATTC 58.916 47.619 0.00 0.00 34.97 2.17
3298 9682 5.527582 GAGCACGAAGGTGATTATTAATGGT 59.472 40.000 0.00 0.00 44.11 3.55
3309 9693 8.621286 GGTGATTATTAATGGTTGTACAAGGAG 58.379 37.037 8.98 0.00 0.00 3.69
3354 9738 4.144727 AGATCCCGTCTCCCCGCT 62.145 66.667 0.00 0.00 28.45 5.52
3360 9744 2.829003 CGTCTCCCCGCTGCTCTA 60.829 66.667 0.00 0.00 0.00 2.43
3361 9745 2.809010 GTCTCCCCGCTGCTCTAC 59.191 66.667 0.00 0.00 0.00 2.59
3408 9792 4.770795 ACACTAATCACCAAGGCTACATC 58.229 43.478 0.00 0.00 0.00 3.06
3443 9828 3.036091 TCCTCTTACCCGGGAATAACAG 58.964 50.000 32.02 13.11 0.00 3.16
3456 9841 2.867109 ATAACAGCAACACAGAGGCT 57.133 45.000 0.00 0.00 38.70 4.58
3495 9880 3.396260 TGTAGCTCTTTTTGTACGCCT 57.604 42.857 0.00 0.00 0.00 5.52
3501 9886 1.975680 TCTTTTTGTACGCCTCCCTCT 59.024 47.619 0.00 0.00 0.00 3.69
3520 9905 2.491298 TCTGCTATCGATCTCTCATGCC 59.509 50.000 0.00 0.00 0.00 4.40
3523 9908 2.477694 GCTATCGATCTCTCATGCCTCG 60.478 54.545 0.00 0.00 0.00 4.63
3553 9938 1.988107 TCATTGTCTTTGGAGAGGCCT 59.012 47.619 3.86 3.86 37.63 5.19
3555 9940 1.434188 TTGTCTTTGGAGAGGCCTCA 58.566 50.000 33.90 12.40 41.20 3.86
3557 9942 0.251634 GTCTTTGGAGAGGCCTCAGG 59.748 60.000 33.90 14.23 41.20 3.86
3572 9957 2.286872 CTCAGGCCACATGATTGAGAC 58.713 52.381 5.01 0.00 37.96 3.36
3592 9977 5.542779 AGACTCAACTACACAAAGACATCC 58.457 41.667 0.00 0.00 0.00 3.51
3607 9992 7.014326 ACAAAGACATCCGCTATACTCATAAGA 59.986 37.037 0.00 0.00 0.00 2.10
3624 10009 9.324008 ACTCATAAGAGGATATCAAGATGACAT 57.676 33.333 4.83 0.00 46.44 3.06
3642 10027 6.456795 TGACATAGATAGAGTTGGACAGTG 57.543 41.667 0.00 0.00 0.00 3.66
3676 10061 0.540365 TTGGAGCCTTCCCTTGCTTG 60.540 55.000 0.00 0.00 43.33 4.01
3677 10062 1.380302 GGAGCCTTCCCTTGCTTGA 59.620 57.895 0.00 0.00 38.11 3.02
3678 10063 0.033699 GGAGCCTTCCCTTGCTTGAT 60.034 55.000 0.00 0.00 38.11 2.57
3679 10064 1.387539 GAGCCTTCCCTTGCTTGATC 58.612 55.000 0.00 0.00 38.11 2.92
3680 10065 0.393537 AGCCTTCCCTTGCTTGATCG 60.394 55.000 0.00 0.00 32.94 3.69
3681 10066 1.379642 GCCTTCCCTTGCTTGATCGG 61.380 60.000 0.00 0.00 0.00 4.18
3682 10067 0.749454 CCTTCCCTTGCTTGATCGGG 60.749 60.000 0.00 0.00 38.07 5.14
3683 10068 0.035056 CTTCCCTTGCTTGATCGGGT 60.035 55.000 1.57 0.00 37.92 5.28
3684 10069 0.404040 TTCCCTTGCTTGATCGGGTT 59.596 50.000 1.57 0.00 37.92 4.11
3685 10070 1.281419 TCCCTTGCTTGATCGGGTTA 58.719 50.000 1.57 0.00 37.92 2.85
3686 10071 1.631388 TCCCTTGCTTGATCGGGTTAA 59.369 47.619 1.57 0.00 37.92 2.01
3687 10072 2.017049 CCCTTGCTTGATCGGGTTAAG 58.983 52.381 0.00 0.00 31.89 1.85
3688 10073 2.355716 CCCTTGCTTGATCGGGTTAAGA 60.356 50.000 0.00 0.00 31.89 2.10
3689 10074 3.343617 CCTTGCTTGATCGGGTTAAGAA 58.656 45.455 0.00 0.00 0.00 2.52
3690 10075 3.127030 CCTTGCTTGATCGGGTTAAGAAC 59.873 47.826 0.00 0.00 0.00 3.01
3691 10076 3.695830 TGCTTGATCGGGTTAAGAACT 57.304 42.857 0.00 0.00 0.00 3.01
3692 10077 4.015872 TGCTTGATCGGGTTAAGAACTT 57.984 40.909 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.154462 CAAACAGTCATCACCTCCCAC 58.846 52.381 0.00 0.00 0.00 4.61
68 69 2.549754 CACACAAACAGTCATCACCTCC 59.450 50.000 0.00 0.00 0.00 4.30
124 125 3.118775 CCCTTGATCATACAGACGTTCCA 60.119 47.826 0.00 0.00 0.00 3.53
137 138 4.144297 CCTGAAACTGAAACCCTTGATCA 58.856 43.478 0.00 0.00 0.00 2.92
146 147 4.580580 ACATTCTCACCCTGAAACTGAAAC 59.419 41.667 0.00 0.00 0.00 2.78
177 178 0.447801 GTTGCCGCTACTCCATGTTG 59.552 55.000 0.00 0.00 0.00 3.33
179 180 0.324943 AAGTTGCCGCTACTCCATGT 59.675 50.000 7.96 0.00 0.00 3.21
197 198 8.646004 TCATGAAATTGGGTGAACTATTCAAAA 58.354 29.630 0.00 0.00 42.15 2.44
204 205 6.303054 TGTCTTCATGAAATTGGGTGAACTA 58.697 36.000 9.88 0.00 0.00 2.24
254 255 9.826574 ATATGCTCAATTAAATCATTTTGCAGT 57.173 25.926 0.00 0.00 30.20 4.40
305 306 6.156429 ACGGAGGGAGTAAAAGAAGATACATT 59.844 38.462 0.00 0.00 0.00 2.71
321 322 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
324 325 6.260271 GGAAGACAAATATTTAGGAACGGAGG 59.740 42.308 0.00 0.00 0.00 4.30
325 326 7.048512 AGGAAGACAAATATTTAGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
326 327 6.954232 AGGAAGACAAATATTTAGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
327 328 8.202137 TCTAGGAAGACAAATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
344 345 6.931281 CAGTCTGTTTGAAATGTCTAGGAAGA 59.069 38.462 0.00 0.00 0.00 2.87
345 346 6.348050 GCAGTCTGTTTGAAATGTCTAGGAAG 60.348 42.308 0.93 0.00 0.00 3.46
346 347 5.470098 GCAGTCTGTTTGAAATGTCTAGGAA 59.530 40.000 0.93 0.00 0.00 3.36
347 348 4.997395 GCAGTCTGTTTGAAATGTCTAGGA 59.003 41.667 0.93 0.00 0.00 2.94
348 349 4.154918 GGCAGTCTGTTTGAAATGTCTAGG 59.845 45.833 0.93 0.00 0.00 3.02
349 350 4.756642 TGGCAGTCTGTTTGAAATGTCTAG 59.243 41.667 0.93 0.00 0.00 2.43
350 351 4.515191 GTGGCAGTCTGTTTGAAATGTCTA 59.485 41.667 0.93 0.00 0.00 2.59
351 352 3.316308 GTGGCAGTCTGTTTGAAATGTCT 59.684 43.478 0.93 0.00 0.00 3.41
352 353 3.066621 TGTGGCAGTCTGTTTGAAATGTC 59.933 43.478 0.93 0.00 0.00 3.06
353 354 3.023119 TGTGGCAGTCTGTTTGAAATGT 58.977 40.909 0.93 0.00 0.00 2.71
354 355 3.713858 TGTGGCAGTCTGTTTGAAATG 57.286 42.857 0.93 0.00 0.00 2.32
355 356 4.826733 TGTATGTGGCAGTCTGTTTGAAAT 59.173 37.500 0.93 0.00 0.00 2.17
356 357 4.203226 TGTATGTGGCAGTCTGTTTGAAA 58.797 39.130 0.93 0.00 0.00 2.69
357 358 3.814625 TGTATGTGGCAGTCTGTTTGAA 58.185 40.909 0.93 0.00 0.00 2.69
358 359 3.070878 TCTGTATGTGGCAGTCTGTTTGA 59.929 43.478 0.93 0.00 35.60 2.69
359 360 3.402110 TCTGTATGTGGCAGTCTGTTTG 58.598 45.455 0.93 0.00 35.60 2.93
360 361 3.769739 TCTGTATGTGGCAGTCTGTTT 57.230 42.857 0.93 0.00 35.60 2.83
361 362 3.008375 ACATCTGTATGTGGCAGTCTGTT 59.992 43.478 0.93 0.00 44.79 3.16
362 363 2.568956 ACATCTGTATGTGGCAGTCTGT 59.431 45.455 0.93 0.00 44.79 3.41
363 364 3.257469 ACATCTGTATGTGGCAGTCTG 57.743 47.619 0.00 0.00 44.79 3.51
402 403 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
403 404 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
404 405 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
405 406 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
406 407 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
407 408 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
408 409 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
409 410 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
410 411 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
411 412 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
412 413 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
413 414 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
414 415 6.653020 AGTGACTACATATGGAGCAAAATGA 58.347 36.000 15.30 0.00 0.00 2.57
415 416 6.932356 AGTGACTACATATGGAGCAAAATG 57.068 37.500 15.30 0.00 0.00 2.32
416 417 6.319658 CCAAGTGACTACATATGGAGCAAAAT 59.680 38.462 15.30 0.00 37.02 1.82
417 418 5.647658 CCAAGTGACTACATATGGAGCAAAA 59.352 40.000 15.30 0.00 37.02 2.44
418 419 5.185454 CCAAGTGACTACATATGGAGCAAA 58.815 41.667 15.30 0.00 37.02 3.68
419 420 4.225042 ACCAAGTGACTACATATGGAGCAA 59.775 41.667 15.30 0.16 37.74 3.91
420 421 3.774766 ACCAAGTGACTACATATGGAGCA 59.225 43.478 15.30 10.95 37.74 4.26
421 422 4.122776 CACCAAGTGACTACATATGGAGC 58.877 47.826 15.30 8.47 37.74 4.70
422 423 5.598416 TCACCAAGTGACTACATATGGAG 57.402 43.478 13.77 13.77 37.67 3.86
423 424 6.367374 TTTCACCAAGTGACTACATATGGA 57.633 37.500 7.80 0.00 42.60 3.41
424 425 8.908786 ATATTTCACCAAGTGACTACATATGG 57.091 34.615 7.80 0.00 42.60 2.74
425 426 9.770097 AGATATTTCACCAAGTGACTACATATG 57.230 33.333 0.00 0.00 42.60 1.78
428 429 9.201989 TCTAGATATTTCACCAAGTGACTACAT 57.798 33.333 0.00 0.00 42.60 2.29
429 430 8.589701 TCTAGATATTTCACCAAGTGACTACA 57.410 34.615 0.00 0.00 42.60 2.74
430 431 9.871238 TTTCTAGATATTTCACCAAGTGACTAC 57.129 33.333 0.00 0.00 42.60 2.73
432 433 8.816894 TCTTTCTAGATATTTCACCAAGTGACT 58.183 33.333 0.00 0.00 42.60 3.41
433 434 8.874816 GTCTTTCTAGATATTTCACCAAGTGAC 58.125 37.037 0.00 0.00 36.09 3.67
434 435 8.593679 TGTCTTTCTAGATATTTCACCAAGTGA 58.406 33.333 0.00 0.00 35.22 3.41
435 436 8.777865 TGTCTTTCTAGATATTTCACCAAGTG 57.222 34.615 0.00 0.00 31.86 3.16
436 437 9.793259 TTTGTCTTTCTAGATATTTCACCAAGT 57.207 29.630 0.00 0.00 31.86 3.16
449 450 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
450 451 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
451 452 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
452 453 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
453 454 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
454 455 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
455 456 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
456 457 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
457 458 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
458 459 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
459 460 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
460 461 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
461 462 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
462 463 7.072076 ACAAATACTCCCTCCGTTCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
463 464 6.384886 ACAAATACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
464 465 5.191124 ACAAATACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
465 466 4.533311 ACAAATACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
466 467 4.098894 ACAAATACTCCCTCCGTTCCTAA 58.901 43.478 0.00 0.00 0.00 2.69
467 468 3.716431 ACAAATACTCCCTCCGTTCCTA 58.284 45.455 0.00 0.00 0.00 2.94
468 469 2.547990 ACAAATACTCCCTCCGTTCCT 58.452 47.619 0.00 0.00 0.00 3.36
469 470 3.345508 AACAAATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
470 471 3.119955 GCAAACAAATACTCCCTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
471 472 2.817844 GCAAACAAATACTCCCTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
472 473 2.224670 TGCAAACAAATACTCCCTCCGT 60.225 45.455 0.00 0.00 0.00 4.69
473 474 2.432444 TGCAAACAAATACTCCCTCCG 58.568 47.619 0.00 0.00 0.00 4.63
474 475 4.864704 TTTGCAAACAAATACTCCCTCC 57.135 40.909 8.05 0.00 40.84 4.30
475 476 5.842907 AGTTTTGCAAACAAATACTCCCTC 58.157 37.500 12.39 0.00 44.96 4.30
476 477 5.869649 AGTTTTGCAAACAAATACTCCCT 57.130 34.783 12.39 0.00 44.96 4.20
477 478 7.116233 CACATAGTTTTGCAAACAAATACTCCC 59.884 37.037 12.39 0.00 44.96 4.30
478 479 7.865385 TCACATAGTTTTGCAAACAAATACTCC 59.135 33.333 12.39 0.00 44.96 3.85
479 480 8.795786 TCACATAGTTTTGCAAACAAATACTC 57.204 30.769 12.39 0.00 44.96 2.59
480 481 9.593134 TTTCACATAGTTTTGCAAACAAATACT 57.407 25.926 12.39 14.40 44.96 2.12
481 482 9.631639 GTTTCACATAGTTTTGCAAACAAATAC 57.368 29.630 12.39 7.12 44.96 1.89
482 483 9.371136 TGTTTCACATAGTTTTGCAAACAAATA 57.629 25.926 12.39 2.21 44.96 1.40
483 484 8.261492 TGTTTCACATAGTTTTGCAAACAAAT 57.739 26.923 12.39 0.00 44.96 2.32
484 485 7.658179 TGTTTCACATAGTTTTGCAAACAAA 57.342 28.000 12.39 0.00 43.97 2.83
485 486 7.840342 ATGTTTCACATAGTTTTGCAAACAA 57.160 28.000 12.39 0.22 36.99 2.83
486 487 7.840342 AATGTTTCACATAGTTTTGCAAACA 57.160 28.000 12.39 2.84 37.97 2.83
487 488 9.553418 AAAAATGTTTCACATAGTTTTGCAAAC 57.447 25.926 12.39 7.48 37.97 2.93
554 555 9.793252 ATTCAAGCATATTGTCAAACATAGTTC 57.207 29.630 0.00 0.00 0.00 3.01
589 593 2.875933 CACGCCGACCCAAATATTACAT 59.124 45.455 0.00 0.00 0.00 2.29
599 603 4.382320 GCCTAACACGCCGACCCA 62.382 66.667 0.00 0.00 0.00 4.51
606 610 3.788766 CAGCACGGCCTAACACGC 61.789 66.667 0.00 0.00 0.00 5.34
607 611 3.788766 GCAGCACGGCCTAACACG 61.789 66.667 0.00 0.00 0.00 4.49
617 621 3.039202 GATTTGGGTCGGCAGCACG 62.039 63.158 0.00 0.00 0.00 5.34
618 622 0.392461 TAGATTTGGGTCGGCAGCAC 60.392 55.000 0.00 0.00 0.00 4.40
619 623 0.326595 TTAGATTTGGGTCGGCAGCA 59.673 50.000 0.00 0.00 0.00 4.41
620 624 1.459450 TTTAGATTTGGGTCGGCAGC 58.541 50.000 0.00 0.00 0.00 5.25
621 625 3.343617 TCTTTTAGATTTGGGTCGGCAG 58.656 45.455 0.00 0.00 0.00 4.85
622 626 3.343617 CTCTTTTAGATTTGGGTCGGCA 58.656 45.455 0.00 0.00 0.00 5.69
623 627 2.683362 CCTCTTTTAGATTTGGGTCGGC 59.317 50.000 0.00 0.00 0.00 5.54
624 628 3.279434 CCCTCTTTTAGATTTGGGTCGG 58.721 50.000 0.00 0.00 0.00 4.79
625 629 2.683362 GCCCTCTTTTAGATTTGGGTCG 59.317 50.000 0.00 0.00 31.68 4.79
626 630 2.683362 CGCCCTCTTTTAGATTTGGGTC 59.317 50.000 0.00 0.00 31.68 4.46
627 631 2.620627 CCGCCCTCTTTTAGATTTGGGT 60.621 50.000 0.00 0.00 31.68 4.51
628 632 2.024414 CCGCCCTCTTTTAGATTTGGG 58.976 52.381 0.00 0.00 32.08 4.12
629 633 1.405463 GCCGCCCTCTTTTAGATTTGG 59.595 52.381 0.00 0.00 0.00 3.28
630 634 1.405463 GGCCGCCCTCTTTTAGATTTG 59.595 52.381 0.00 0.00 0.00 2.32
631 635 1.763968 GGCCGCCCTCTTTTAGATTT 58.236 50.000 0.00 0.00 0.00 2.17
632 636 0.463833 CGGCCGCCCTCTTTTAGATT 60.464 55.000 14.67 0.00 0.00 2.40
633 637 1.146263 CGGCCGCCCTCTTTTAGAT 59.854 57.895 14.67 0.00 0.00 1.98
634 638 2.582436 CGGCCGCCCTCTTTTAGA 59.418 61.111 14.67 0.00 0.00 2.10
635 639 3.202706 GCGGCCGCCCTCTTTTAG 61.203 66.667 39.89 0.00 34.56 1.85
661 665 4.367023 TCTTTGTCGGGTCGGCCG 62.367 66.667 22.12 22.12 34.97 6.13
662 666 2.434359 CTCTTTGTCGGGTCGGCC 60.434 66.667 0.00 0.00 0.00 6.13
663 667 3.119096 GCTCTTTGTCGGGTCGGC 61.119 66.667 0.00 0.00 0.00 5.54
664 668 2.809601 CGCTCTTTGTCGGGTCGG 60.810 66.667 0.00 0.00 0.00 4.79
665 669 2.809601 CCGCTCTTTGTCGGGTCG 60.810 66.667 0.00 0.00 41.82 4.79
666 670 1.737008 GTCCGCTCTTTGTCGGGTC 60.737 63.158 0.64 0.00 45.31 4.46
667 671 2.035237 TTGTCCGCTCTTTGTCGGGT 62.035 55.000 0.64 0.00 45.31 5.28
668 672 0.882927 TTTGTCCGCTCTTTGTCGGG 60.883 55.000 0.64 0.00 45.31 5.14
669 673 0.941542 TTTTGTCCGCTCTTTGTCGG 59.058 50.000 0.00 0.00 46.52 4.79
670 674 1.660333 GCTTTTGTCCGCTCTTTGTCG 60.660 52.381 0.00 0.00 0.00 4.35
671 675 1.660333 CGCTTTTGTCCGCTCTTTGTC 60.660 52.381 0.00 0.00 0.00 3.18
672 676 0.307760 CGCTTTTGTCCGCTCTTTGT 59.692 50.000 0.00 0.00 0.00 2.83
673 677 0.307760 ACGCTTTTGTCCGCTCTTTG 59.692 50.000 0.00 0.00 0.00 2.77
674 678 0.586802 GACGCTTTTGTCCGCTCTTT 59.413 50.000 0.00 0.00 32.61 2.52
675 679 1.557443 CGACGCTTTTGTCCGCTCTT 61.557 55.000 0.00 0.00 35.40 2.85
676 680 2.022129 CGACGCTTTTGTCCGCTCT 61.022 57.895 0.00 0.00 35.40 4.09
677 681 2.211761 GACGACGCTTTTGTCCGCTC 62.212 60.000 0.00 0.00 35.40 5.03
678 682 2.279918 ACGACGCTTTTGTCCGCT 60.280 55.556 0.00 0.00 35.40 5.52
679 683 2.170273 GACGACGCTTTTGTCCGC 59.830 61.111 0.00 0.00 35.40 5.54
707 711 4.660938 AGCAACTCCAACGGGCCC 62.661 66.667 13.57 13.57 0.00 5.80
708 712 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
709 713 3.423154 CGAGCAACTCCAACGGGC 61.423 66.667 0.00 0.00 0.00 6.13
710 714 1.738099 CTCGAGCAACTCCAACGGG 60.738 63.158 0.00 0.00 0.00 5.28
711 715 1.738099 CCTCGAGCAACTCCAACGG 60.738 63.158 6.99 0.00 0.00 4.44
712 716 0.108615 ATCCTCGAGCAACTCCAACG 60.109 55.000 6.99 0.00 0.00 4.10
713 717 1.066858 TCATCCTCGAGCAACTCCAAC 60.067 52.381 6.99 0.00 0.00 3.77
714 718 1.066858 GTCATCCTCGAGCAACTCCAA 60.067 52.381 6.99 0.00 0.00 3.53
715 719 0.532573 GTCATCCTCGAGCAACTCCA 59.467 55.000 6.99 0.00 0.00 3.86
716 720 0.179097 GGTCATCCTCGAGCAACTCC 60.179 60.000 6.99 2.74 33.55 3.85
717 721 0.532573 TGGTCATCCTCGAGCAACTC 59.467 55.000 6.99 0.00 40.28 3.01
718 722 0.534412 CTGGTCATCCTCGAGCAACT 59.466 55.000 6.99 0.00 42.45 3.16
719 723 0.460987 CCTGGTCATCCTCGAGCAAC 60.461 60.000 6.99 1.62 42.45 4.17
720 724 0.614697 TCCTGGTCATCCTCGAGCAA 60.615 55.000 6.99 0.00 42.45 3.91
721 725 1.000359 TCCTGGTCATCCTCGAGCA 60.000 57.895 6.99 0.00 40.92 4.26
722 726 0.753479 TCTCCTGGTCATCCTCGAGC 60.753 60.000 6.99 0.00 33.02 5.03
723 727 1.317613 CTCTCCTGGTCATCCTCGAG 58.682 60.000 5.13 5.13 33.73 4.04
724 728 0.753479 GCTCTCCTGGTCATCCTCGA 60.753 60.000 0.00 0.00 34.23 4.04
725 729 1.739049 GCTCTCCTGGTCATCCTCG 59.261 63.158 0.00 0.00 34.23 4.63
744 748 3.058639 CGCCACTCTCTTTCTTTCTTTGG 60.059 47.826 0.00 0.00 0.00 3.28
879 883 5.061560 GTGACACGAATGATGAGAAGAACTC 59.938 44.000 0.00 0.00 45.11 3.01
883 887 4.519540 TGTGACACGAATGATGAGAAGA 57.480 40.909 0.22 0.00 0.00 2.87
885 889 6.809869 AGATATGTGACACGAATGATGAGAA 58.190 36.000 0.22 0.00 0.00 2.87
906 910 4.223700 TCTTGTGGCTGTGAGTTGATAGAT 59.776 41.667 0.00 0.00 0.00 1.98
912 916 2.417933 GCTATCTTGTGGCTGTGAGTTG 59.582 50.000 0.00 0.00 0.00 3.16
915 919 2.391616 TGCTATCTTGTGGCTGTGAG 57.608 50.000 0.00 0.00 34.98 3.51
923 927 2.535534 CGTGATGCGTTGCTATCTTGTG 60.536 50.000 0.00 0.00 35.54 3.33
970 2816 2.640184 GGGAATTTCCAACGTCCCTAG 58.360 52.381 17.08 0.00 45.50 3.02
976 2822 2.938838 TGACTTGGGAATTTCCAACGT 58.061 42.857 14.67 15.58 41.44 3.99
977 2823 4.048504 GTTTGACTTGGGAATTTCCAACG 58.951 43.478 14.67 12.68 41.44 4.10
978 2824 5.017294 TGTTTGACTTGGGAATTTCCAAC 57.983 39.130 14.67 6.64 41.44 3.77
979 2825 5.454471 CCATGTTTGACTTGGGAATTTCCAA 60.454 40.000 17.59 17.59 43.82 3.53
1040 2889 2.815647 GCGGGCGAAGACTGGAAG 60.816 66.667 0.00 0.00 46.50 3.46
1045 2894 2.100879 AAACTCAGCGGGCGAAGACT 62.101 55.000 0.00 0.00 32.70 3.24
1060 2909 2.232941 TCACCCGCTCGAATAAGAAACT 59.767 45.455 0.00 0.00 0.00 2.66
1074 2923 0.383949 TTTCTTGCTTTGTCACCCGC 59.616 50.000 0.00 0.00 0.00 6.13
1111 2964 1.050988 ATGTCTAGCAGTGGGGCGAT 61.051 55.000 0.00 0.00 39.27 4.58
1437 3301 1.890894 GTTGAGGCCAGCGAGTAGA 59.109 57.895 5.01 0.00 0.00 2.59
1596 3478 0.528684 CGATGAGAGGGCGGAAGTTC 60.529 60.000 0.00 0.00 0.00 3.01
1695 3627 7.642071 AATCAATTCGTTGTTGAGAAATTGG 57.358 32.000 0.00 0.00 38.81 3.16
2291 8474 4.087892 CCTGTCCCTGGTCGCCTG 62.088 72.222 0.00 0.00 0.00 4.85
2674 8863 5.669477 AGAAGCTAACTATTCTTGCCAGAG 58.331 41.667 0.00 0.00 31.76 3.35
2715 8904 2.602257 TTGCTCGATCATTGGTCGAT 57.398 45.000 21.36 0.00 45.81 3.59
2719 8908 3.346315 TCATGTTTGCTCGATCATTGGT 58.654 40.909 0.00 0.00 0.00 3.67
2723 8912 2.804527 CCGATCATGTTTGCTCGATCAT 59.195 45.455 1.23 0.00 42.56 2.45
2737 8926 5.878116 TCTAAAATTTTCGTGTCCCGATCAT 59.122 36.000 6.72 0.00 46.75 2.45
2830 9045 5.089970 TCGATACATCCATCCATCCAATC 57.910 43.478 0.00 0.00 0.00 2.67
2868 9083 3.805422 CACTACAACAGCTACGAAAACCA 59.195 43.478 0.00 0.00 0.00 3.67
2870 9085 4.376109 GCTCACTACAACAGCTACGAAAAC 60.376 45.833 0.00 0.00 0.00 2.43
2874 9089 1.201647 GGCTCACTACAACAGCTACGA 59.798 52.381 0.00 0.00 33.38 3.43
2899 9245 1.608109 GCCCCGGTTTTCGTTAAGAAA 59.392 47.619 0.00 0.00 46.22 2.52
2946 9292 9.014297 CACCTCTGGTTAAAACTGATCTTTATT 57.986 33.333 0.00 0.00 31.02 1.40
2963 9309 3.788142 ACAATCCCATTATCACCTCTGGT 59.212 43.478 0.00 0.00 35.62 4.00
2964 9310 4.443978 ACAATCCCATTATCACCTCTGG 57.556 45.455 0.00 0.00 0.00 3.86
2965 9311 5.068198 CCAAACAATCCCATTATCACCTCTG 59.932 44.000 0.00 0.00 0.00 3.35
3028 9377 4.114015 TCTTCTCCGAGCCCTTATATCA 57.886 45.455 0.00 0.00 0.00 2.15
3029 9378 5.186021 TCATTCTTCTCCGAGCCCTTATATC 59.814 44.000 0.00 0.00 0.00 1.63
3031 9380 4.480115 TCATTCTTCTCCGAGCCCTTATA 58.520 43.478 0.00 0.00 0.00 0.98
3032 9381 3.309296 TCATTCTTCTCCGAGCCCTTAT 58.691 45.455 0.00 0.00 0.00 1.73
3033 9382 2.747177 TCATTCTTCTCCGAGCCCTTA 58.253 47.619 0.00 0.00 0.00 2.69
3034 9383 1.573108 TCATTCTTCTCCGAGCCCTT 58.427 50.000 0.00 0.00 0.00 3.95
3035 9384 1.573108 TTCATTCTTCTCCGAGCCCT 58.427 50.000 0.00 0.00 0.00 5.19
3036 9385 2.093447 TCTTTCATTCTTCTCCGAGCCC 60.093 50.000 0.00 0.00 0.00 5.19
3037 9386 3.252974 TCTTTCATTCTTCTCCGAGCC 57.747 47.619 0.00 0.00 0.00 4.70
3039 9388 4.560819 CGAGTTCTTTCATTCTTCTCCGAG 59.439 45.833 0.00 0.00 0.00 4.63
3040 9389 4.022242 ACGAGTTCTTTCATTCTTCTCCGA 60.022 41.667 0.00 0.00 0.00 4.55
3041 9390 4.090642 CACGAGTTCTTTCATTCTTCTCCG 59.909 45.833 0.00 0.00 0.00 4.63
3042 9391 5.230942 TCACGAGTTCTTTCATTCTTCTCC 58.769 41.667 0.00 0.00 0.00 3.71
3061 9424 1.733389 GCAGATTGGTTGGCATTCACG 60.733 52.381 0.00 0.00 0.00 4.35
3089 9452 6.785191 AGTTATCATGTAAATTTCTGCCGTG 58.215 36.000 0.00 0.00 0.00 4.94
3091 9454 8.184192 AGAAAGTTATCATGTAAATTTCTGCCG 58.816 33.333 25.30 0.00 44.70 5.69
3116 9479 1.303799 GCCACATGTCTCACCAGCAG 61.304 60.000 0.00 0.00 0.00 4.24
3145 9508 0.867746 TATCAATCTTCCGCGCATGC 59.132 50.000 7.91 7.91 37.91 4.06
3195 9579 5.860716 GCTTGCAATAACTCAAAGAGGAAAG 59.139 40.000 0.00 0.00 33.35 2.62
3226 9610 5.630680 CCATCGAGTGAAATTTTGTCCAAAG 59.369 40.000 0.00 0.00 0.00 2.77
3254 9638 4.145876 TCGCAGTTTGTAGCAGAATTTG 57.854 40.909 0.00 0.00 0.00 2.32
3260 9644 0.164647 GTGCTCGCAGTTTGTAGCAG 59.835 55.000 0.00 0.00 45.04 4.24
3328 9712 0.470268 AGACGGGATCTCCTAAGCCC 60.470 60.000 0.00 0.00 37.21 5.19
3354 9738 1.266989 CCATCGCTATGACGTAGAGCA 59.733 52.381 14.14 0.00 43.80 4.26
3360 9744 1.869754 GCACATCCATCGCTATGACGT 60.870 52.381 0.00 0.00 34.84 4.34
3361 9745 0.786581 GCACATCCATCGCTATGACG 59.213 55.000 0.00 0.00 34.84 4.35
3408 9792 2.246091 AGAGGAAAGAGGACCCTCAG 57.754 55.000 17.50 0.00 46.74 3.35
3443 9828 2.338577 ATGGATAGCCTCTGTGTTGC 57.661 50.000 0.00 0.00 34.31 4.17
3456 9841 4.265904 ACATCATCGGCGTAAATGGATA 57.734 40.909 6.85 0.00 0.00 2.59
3495 9880 2.373502 TGAGAGATCGATAGCAGAGGGA 59.626 50.000 0.00 0.00 0.00 4.20
3501 9886 2.491298 GAGGCATGAGAGATCGATAGCA 59.509 50.000 0.00 0.00 0.00 3.49
3520 9905 1.662629 GACAATGAGCACACATCCGAG 59.337 52.381 0.00 0.00 0.00 4.63
3523 9908 3.366679 CCAAAGACAATGAGCACACATCC 60.367 47.826 0.00 0.00 0.00 3.51
3553 9938 1.911357 AGTCTCAATCATGTGGCCTGA 59.089 47.619 3.32 0.00 0.00 3.86
3555 9940 1.911357 TGAGTCTCAATCATGTGGCCT 59.089 47.619 3.32 0.00 0.00 5.19
3557 9942 3.341823 AGTTGAGTCTCAATCATGTGGC 58.658 45.455 18.08 3.33 38.79 5.01
3558 9943 5.349817 GTGTAGTTGAGTCTCAATCATGTGG 59.650 44.000 18.08 0.00 38.79 4.17
3559 9944 5.928264 TGTGTAGTTGAGTCTCAATCATGTG 59.072 40.000 18.08 0.00 38.79 3.21
3560 9945 6.101650 TGTGTAGTTGAGTCTCAATCATGT 57.898 37.500 18.08 4.52 38.79 3.21
3561 9946 7.386025 TCTTTGTGTAGTTGAGTCTCAATCATG 59.614 37.037 18.08 9.73 38.79 3.07
3562 9947 7.386299 GTCTTTGTGTAGTTGAGTCTCAATCAT 59.614 37.037 18.08 10.11 38.79 2.45
3563 9948 6.701841 GTCTTTGTGTAGTTGAGTCTCAATCA 59.298 38.462 18.08 14.09 38.79 2.57
3572 9957 3.123621 GCGGATGTCTTTGTGTAGTTGAG 59.876 47.826 0.00 0.00 0.00 3.02
3592 9977 9.114952 TCTTGATATCCTCTTATGAGTATAGCG 57.885 37.037 0.00 0.00 38.61 4.26
3611 9996 9.813826 TCCAACTCTATCTATGTCATCTTGATA 57.186 33.333 0.00 0.00 0.00 2.15
3624 10009 3.982516 AGGCACTGTCCAACTCTATCTA 58.017 45.455 0.00 0.00 37.18 1.98
3629 10014 1.717032 TGTAGGCACTGTCCAACTCT 58.283 50.000 0.00 0.00 41.52 3.24
3642 10027 3.429410 GGCTCCAAATTGACATTGTAGGC 60.429 47.826 0.00 0.00 0.00 3.93



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.