Multiple sequence alignment - TraesCS5D01G324600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G324600 | chr5D | 100.000 | 3693 | 0 | 0 | 1 | 3693 | 416260292 | 416256600 | 0.000000e+00 | 6820 |
1 | TraesCS5D01G324600 | chr5D | 95.679 | 324 | 14 | 0 | 1 | 324 | 272143337 | 272143014 | 4.230000e-144 | 521 |
2 | TraesCS5D01G324600 | chr5D | 93.023 | 129 | 4 | 3 | 483 | 608 | 434346820 | 434346946 | 2.270000e-42 | 183 |
3 | TraesCS5D01G324600 | chr5D | 91.538 | 130 | 5 | 4 | 483 | 608 | 530834045 | 530834172 | 1.360000e-39 | 174 |
4 | TraesCS5D01G324600 | chr5D | 91.935 | 124 | 6 | 2 | 483 | 603 | 92104388 | 92104510 | 1.760000e-38 | 171 |
5 | TraesCS5D01G324600 | chr5D | 85.606 | 132 | 12 | 3 | 600 | 726 | 366736039 | 366736168 | 8.320000e-27 | 132 |
6 | TraesCS5D01G324600 | chr5D | 78.286 | 175 | 37 | 1 | 2320 | 2494 | 126372457 | 126372284 | 1.080000e-20 | 111 |
7 | TraesCS5D01G324600 | chr5B | 94.890 | 1820 | 79 | 6 | 925 | 2737 | 503116846 | 503115034 | 0.000000e+00 | 2833 |
8 | TraesCS5D01G324600 | chr5B | 95.077 | 325 | 15 | 1 | 1 | 325 | 143299209 | 143298886 | 9.150000e-141 | 510 |
9 | TraesCS5D01G324600 | chr5B | 89.706 | 204 | 19 | 1 | 727 | 928 | 503118609 | 503118406 | 3.660000e-65 | 259 |
10 | TraesCS5D01G324600 | chr5B | 87.879 | 132 | 9 | 6 | 600 | 726 | 681615660 | 681615789 | 8.260000e-32 | 148 |
11 | TraesCS5D01G324600 | chr5A | 94.867 | 1773 | 74 | 8 | 944 | 2710 | 529081201 | 529079440 | 0.000000e+00 | 2754 |
12 | TraesCS5D01G324600 | chr5A | 88.954 | 851 | 45 | 14 | 2865 | 3676 | 529079156 | 529078316 | 0.000000e+00 | 1005 |
13 | TraesCS5D01G324600 | chr5A | 93.220 | 177 | 12 | 0 | 315 | 491 | 110665419 | 110665243 | 1.020000e-65 | 261 |
14 | TraesCS5D01G324600 | chr5A | 91.146 | 192 | 14 | 3 | 747 | 936 | 529081684 | 529081494 | 1.320000e-64 | 257 |
15 | TraesCS5D01G324600 | chr5A | 96.203 | 79 | 2 | 1 | 2797 | 2875 | 529079355 | 529079278 | 1.080000e-25 | 128 |
16 | TraesCS5D01G324600 | chr7A | 85.530 | 1548 | 188 | 25 | 1142 | 2686 | 8890853 | 8889339 | 0.000000e+00 | 1585 |
17 | TraesCS5D01G324600 | chr7A | 95.238 | 168 | 7 | 1 | 317 | 484 | 569407028 | 569407194 | 7.860000e-67 | 265 |
18 | TraesCS5D01G324600 | chr7A | 76.471 | 527 | 93 | 27 | 1148 | 1653 | 26823938 | 26823422 | 1.320000e-64 | 257 |
19 | TraesCS5D01G324600 | chr7A | 87.923 | 207 | 21 | 4 | 317 | 521 | 689895172 | 689894968 | 1.330000e-59 | 241 |
20 | TraesCS5D01G324600 | chr7D | 84.217 | 1546 | 199 | 26 | 1142 | 2686 | 8381921 | 8380420 | 0.000000e+00 | 1461 |
21 | TraesCS5D01G324600 | chr7D | 83.822 | 1570 | 193 | 33 | 1139 | 2694 | 8454246 | 8452724 | 0.000000e+00 | 1435 |
22 | TraesCS5D01G324600 | chr7D | 93.651 | 126 | 5 | 3 | 483 | 608 | 162999355 | 162999233 | 6.300000e-43 | 185 |
23 | TraesCS5D01G324600 | chr7D | 72.983 | 533 | 116 | 19 | 2058 | 2582 | 26559132 | 26558620 | 1.060000e-35 | 161 |
24 | TraesCS5D01G324600 | chr4A | 85.027 | 935 | 123 | 10 | 1738 | 2671 | 731380614 | 731381532 | 0.000000e+00 | 935 |
25 | TraesCS5D01G324600 | chr4A | 76.008 | 471 | 92 | 17 | 1141 | 1594 | 710284819 | 710284353 | 1.330000e-54 | 224 |
26 | TraesCS5D01G324600 | chr4A | 73.881 | 536 | 112 | 22 | 2058 | 2585 | 710676355 | 710675840 | 4.870000e-44 | 189 |
27 | TraesCS5D01G324600 | chr4A | 80.769 | 182 | 35 | 0 | 2325 | 2506 | 703708499 | 703708680 | 3.840000e-30 | 143 |
28 | TraesCS5D01G324600 | chr4A | 79.670 | 182 | 37 | 0 | 2325 | 2506 | 703606676 | 703606857 | 8.320000e-27 | 132 |
29 | TraesCS5D01G324600 | chr2A | 76.682 | 1501 | 276 | 57 | 1141 | 2604 | 13004706 | 13003243 | 0.000000e+00 | 765 |
30 | TraesCS5D01G324600 | chr2A | 75.659 | 1479 | 279 | 58 | 1142 | 2582 | 544331859 | 544333294 | 0.000000e+00 | 662 |
31 | TraesCS5D01G324600 | chr2A | 83.475 | 472 | 57 | 14 | 1149 | 1605 | 13013262 | 13013727 | 1.590000e-113 | 420 |
32 | TraesCS5D01G324600 | chr2A | 73.526 | 865 | 175 | 41 | 1768 | 2612 | 448153770 | 448154600 | 2.810000e-71 | 279 |
33 | TraesCS5D01G324600 | chr2A | 72.847 | 836 | 179 | 31 | 1798 | 2609 | 13068365 | 13067554 | 3.680000e-60 | 243 |
34 | TraesCS5D01G324600 | chr2B | 74.064 | 1496 | 306 | 62 | 1148 | 2605 | 19102541 | 19101090 | 4.200000e-149 | 538 |
35 | TraesCS5D01G324600 | chr2B | 95.950 | 321 | 13 | 0 | 1 | 321 | 444527984 | 444528304 | 4.230000e-144 | 521 |
36 | TraesCS5D01G324600 | chr2B | 76.586 | 867 | 153 | 32 | 1738 | 2582 | 481899864 | 481900702 | 7.330000e-117 | 431 |
37 | TraesCS5D01G324600 | chr2B | 78.557 | 499 | 95 | 10 | 1149 | 1641 | 19075087 | 19074595 | 5.950000e-83 | 318 |
38 | TraesCS5D01G324600 | chr2B | 78.947 | 456 | 89 | 6 | 1142 | 1595 | 18913698 | 18914148 | 1.670000e-78 | 303 |
39 | TraesCS5D01G324600 | chr2B | 73.512 | 857 | 174 | 45 | 1777 | 2612 | 405262972 | 405263796 | 3.630000e-70 | 276 |
40 | TraesCS5D01G324600 | chr2B | 85.612 | 139 | 12 | 5 | 600 | 732 | 599206832 | 599206696 | 4.970000e-29 | 139 |
41 | TraesCS5D01G324600 | chr1D | 96.250 | 320 | 12 | 0 | 1 | 320 | 442053714 | 442053395 | 3.270000e-145 | 525 |
42 | TraesCS5D01G324600 | chr1D | 95.950 | 321 | 13 | 0 | 1 | 321 | 201651458 | 201651138 | 4.230000e-144 | 521 |
43 | TraesCS5D01G324600 | chr1D | 95.327 | 321 | 15 | 0 | 1 | 321 | 399776210 | 399776530 | 9.150000e-141 | 510 |
44 | TraesCS5D01G324600 | chr1D | 95.783 | 166 | 6 | 1 | 320 | 485 | 490423153 | 490423317 | 2.190000e-67 | 267 |
45 | TraesCS5D01G324600 | chr1D | 79.661 | 295 | 52 | 8 | 1145 | 1435 | 54927286 | 54926996 | 4.830000e-49 | 206 |
46 | TraesCS5D01G324600 | chr1D | 96.032 | 126 | 3 | 2 | 483 | 608 | 399776529 | 399776652 | 1.740000e-48 | 204 |
47 | TraesCS5D01G324600 | chr1D | 93.548 | 124 | 7 | 1 | 483 | 606 | 477865138 | 477865016 | 2.270000e-42 | 183 |
48 | TraesCS5D01G324600 | chr1D | 92.248 | 129 | 5 | 3 | 483 | 608 | 201651139 | 201651013 | 1.050000e-40 | 178 |
49 | TraesCS5D01G324600 | chr1D | 91.473 | 129 | 4 | 4 | 483 | 608 | 316300350 | 316300226 | 1.760000e-38 | 171 |
50 | TraesCS5D01G324600 | chr1D | 91.870 | 123 | 4 | 4 | 483 | 599 | 441189056 | 441189178 | 2.280000e-37 | 167 |
51 | TraesCS5D01G324600 | chr1D | 90.476 | 126 | 4 | 6 | 489 | 608 | 333493276 | 333493153 | 3.820000e-35 | 159 |
52 | TraesCS5D01G324600 | chr1D | 88.636 | 132 | 7 | 6 | 483 | 608 | 442053394 | 442053265 | 1.780000e-33 | 154 |
53 | TraesCS5D01G324600 | chr1D | 89.344 | 122 | 8 | 4 | 483 | 599 | 332943901 | 332944022 | 8.260000e-32 | 148 |
54 | TraesCS5D01G324600 | chr1D | 85.185 | 135 | 13 | 3 | 597 | 726 | 332944049 | 332944181 | 8.320000e-27 | 132 |
55 | TraesCS5D01G324600 | chr1D | 83.333 | 132 | 13 | 6 | 600 | 726 | 316300203 | 316300076 | 3.010000e-21 | 113 |
56 | TraesCS5D01G324600 | chr1D | 81.890 | 127 | 15 | 5 | 600 | 726 | 65029442 | 65029560 | 2.350000e-17 | 100 |
57 | TraesCS5D01G324600 | chr3D | 95.639 | 321 | 14 | 0 | 1 | 321 | 561766339 | 561766659 | 1.970000e-142 | 516 |
58 | TraesCS5D01G324600 | chr3D | 92.632 | 190 | 11 | 2 | 305 | 492 | 361805879 | 361805691 | 1.690000e-68 | 270 |
59 | TraesCS5D01G324600 | chr3D | 73.921 | 556 | 118 | 19 | 2060 | 2609 | 54984969 | 54984435 | 8.090000e-47 | 198 |
60 | TraesCS5D01G324600 | chr3D | 93.023 | 129 | 4 | 3 | 483 | 608 | 39162193 | 39162067 | 2.270000e-42 | 183 |
61 | TraesCS5D01G324600 | chr3D | 93.496 | 123 | 5 | 1 | 483 | 602 | 529138042 | 529138164 | 2.930000e-41 | 180 |
62 | TraesCS5D01G324600 | chr3D | 85.926 | 135 | 12 | 3 | 597 | 726 | 231733368 | 231733500 | 1.790000e-28 | 137 |
63 | TraesCS5D01G324600 | chr3D | 86.364 | 132 | 11 | 5 | 600 | 726 | 338545344 | 338545473 | 1.790000e-28 | 137 |
64 | TraesCS5D01G324600 | chr3D | 86.364 | 132 | 10 | 6 | 600 | 726 | 560949616 | 560949488 | 1.790000e-28 | 137 |
65 | TraesCS5D01G324600 | chr3D | 85.185 | 135 | 13 | 3 | 597 | 726 | 561766804 | 561766936 | 8.320000e-27 | 132 |
66 | TraesCS5D01G324600 | chr6B | 95.342 | 322 | 15 | 0 | 3 | 324 | 132889211 | 132888890 | 2.540000e-141 | 512 |
67 | TraesCS5D01G324600 | chr6B | 76.944 | 733 | 117 | 37 | 1821 | 2533 | 674327862 | 674328562 | 1.620000e-98 | 370 |
68 | TraesCS5D01G324600 | chr6B | 77.559 | 508 | 108 | 5 | 1139 | 1641 | 612745133 | 612744627 | 5.990000e-78 | 302 |
69 | TraesCS5D01G324600 | chr6B | 94.444 | 126 | 4 | 3 | 483 | 608 | 420768923 | 420769045 | 1.350000e-44 | 191 |
70 | TraesCS5D01G324600 | chr2D | 95.327 | 321 | 15 | 0 | 1 | 321 | 579068351 | 579068671 | 9.150000e-141 | 510 |
71 | TraesCS5D01G324600 | chr2D | 73.525 | 1492 | 310 | 71 | 1148 | 2604 | 337923087 | 337924528 | 4.290000e-134 | 488 |
72 | TraesCS5D01G324600 | chr2D | 76.416 | 865 | 158 | 29 | 1738 | 2582 | 406261413 | 406262251 | 3.410000e-115 | 425 |
73 | TraesCS5D01G324600 | chr2D | 82.553 | 470 | 65 | 10 | 1149 | 1605 | 12556622 | 12557087 | 7.430000e-107 | 398 |
74 | TraesCS5D01G324600 | chr2D | 76.242 | 463 | 81 | 19 | 2067 | 2522 | 338330828 | 338330388 | 6.210000e-53 | 219 |
75 | TraesCS5D01G324600 | chr2D | 96.825 | 126 | 2 | 2 | 483 | 608 | 310711754 | 310711877 | 3.740000e-50 | 209 |
76 | TraesCS5D01G324600 | chr6D | 75.613 | 857 | 169 | 30 | 1740 | 2582 | 446103372 | 446104202 | 4.470000e-104 | 388 |
77 | TraesCS5D01G324600 | chr6D | 93.798 | 129 | 3 | 3 | 483 | 608 | 377821509 | 377821635 | 4.870000e-44 | 189 |
78 | TraesCS5D01G324600 | chr6D | 81.818 | 209 | 28 | 10 | 1148 | 1351 | 430401672 | 430401875 | 2.280000e-37 | 167 |
79 | TraesCS5D01G324600 | chr6D | 89.922 | 129 | 8 | 3 | 483 | 608 | 156574196 | 156574070 | 1.060000e-35 | 161 |
80 | TraesCS5D01G324600 | chr6D | 90.551 | 127 | 4 | 6 | 488 | 608 | 163344813 | 163344937 | 1.060000e-35 | 161 |
81 | TraesCS5D01G324600 | chr6D | 80.583 | 206 | 27 | 13 | 1148 | 1347 | 430321458 | 430321656 | 2.970000e-31 | 147 |
82 | TraesCS5D01G324600 | chr6D | 79.621 | 211 | 30 | 13 | 1148 | 1351 | 430318294 | 430318498 | 4.970000e-29 | 139 |
83 | TraesCS5D01G324600 | chr6D | 85.606 | 132 | 12 | 3 | 600 | 726 | 372780420 | 372780549 | 8.320000e-27 | 132 |
84 | TraesCS5D01G324600 | chr6D | 86.364 | 110 | 9 | 2 | 600 | 704 | 427238802 | 427238910 | 8.380000e-22 | 115 |
85 | TraesCS5D01G324600 | chrUn | 80.000 | 495 | 86 | 7 | 1149 | 1641 | 108385233 | 108384750 | 1.630000e-93 | 353 |
86 | TraesCS5D01G324600 | chrUn | 91.964 | 112 | 6 | 1 | 491 | 599 | 36389644 | 36389533 | 1.780000e-33 | 154 |
87 | TraesCS5D01G324600 | chrUn | 91.964 | 112 | 6 | 1 | 491 | 599 | 304608439 | 304608328 | 1.780000e-33 | 154 |
88 | TraesCS5D01G324600 | chr6A | 75.638 | 784 | 135 | 41 | 1821 | 2582 | 592817843 | 592817094 | 4.570000e-89 | 339 |
89 | TraesCS5D01G324600 | chr6A | 74.627 | 737 | 127 | 40 | 1821 | 2533 | 592813667 | 592812967 | 1.690000e-68 | 270 |
90 | TraesCS5D01G324600 | chr6A | 90.576 | 191 | 16 | 2 | 316 | 505 | 78517708 | 78517519 | 6.120000e-63 | 252 |
91 | TraesCS5D01G324600 | chr6A | 80.603 | 232 | 30 | 13 | 1148 | 1370 | 576911120 | 576911345 | 8.200000e-37 | 165 |
92 | TraesCS5D01G324600 | chr1A | 76.998 | 513 | 103 | 13 | 1145 | 1649 | 53997354 | 53996849 | 2.810000e-71 | 279 |
93 | TraesCS5D01G324600 | chr1A | 95.266 | 169 | 8 | 0 | 317 | 485 | 74014237 | 74014405 | 6.080000e-68 | 268 |
94 | TraesCS5D01G324600 | chr1A | 94.706 | 170 | 9 | 0 | 317 | 486 | 448923783 | 448923952 | 7.860000e-67 | 265 |
95 | TraesCS5D01G324600 | chr1A | 81.061 | 132 | 18 | 4 | 600 | 726 | 273512677 | 273512548 | 8.440000e-17 | 99 |
96 | TraesCS5D01G324600 | chr3B | 93.785 | 177 | 9 | 2 | 320 | 495 | 362481276 | 362481101 | 7.860000e-67 | 265 |
97 | TraesCS5D01G324600 | chr3B | 87.121 | 132 | 10 | 3 | 600 | 726 | 61541711 | 61541840 | 3.840000e-30 | 143 |
98 | TraesCS5D01G324600 | chr1B | 76.349 | 482 | 108 | 5 | 1145 | 1623 | 90544309 | 90543831 | 1.700000e-63 | 254 |
99 | TraesCS5D01G324600 | chr1B | 81.481 | 162 | 28 | 2 | 2350 | 2511 | 90406368 | 90406527 | 8.320000e-27 | 132 |
100 | TraesCS5D01G324600 | chr4D | 96.581 | 117 | 3 | 1 | 483 | 599 | 354826958 | 354826843 | 3.760000e-45 | 193 |
101 | TraesCS5D01G324600 | chr4D | 86.364 | 132 | 11 | 3 | 600 | 726 | 37496899 | 37496770 | 1.790000e-28 | 137 |
102 | TraesCS5D01G324600 | chr4D | 83.688 | 141 | 15 | 5 | 600 | 735 | 47501221 | 47501084 | 3.870000e-25 | 126 |
103 | TraesCS5D01G324600 | chr4B | 87.402 | 127 | 8 | 5 | 600 | 726 | 588697717 | 588697599 | 4.970000e-29 | 139 |
104 | TraesCS5D01G324600 | chr4B | 85.211 | 142 | 13 | 4 | 600 | 736 | 598453252 | 598453390 | 4.970000e-29 | 139 |
105 | TraesCS5D01G324600 | chr4B | 86.364 | 132 | 11 | 3 | 600 | 726 | 520269524 | 520269653 | 1.790000e-28 | 137 |
106 | TraesCS5D01G324600 | chr4B | 85.156 | 128 | 12 | 5 | 600 | 722 | 638126738 | 638126863 | 1.390000e-24 | 124 |
107 | TraesCS5D01G324600 | chr7B | 86.364 | 132 | 11 | 4 | 600 | 726 | 180481397 | 180481526 | 1.790000e-28 | 137 |
108 | TraesCS5D01G324600 | chr7B | 87.755 | 98 | 8 | 4 | 2334 | 2429 | 444292484 | 444292579 | 1.080000e-20 | 111 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G324600 | chr5D | 416256600 | 416260292 | 3692 | True | 6820.0 | 6820 | 100.0000 | 1 | 3693 | 1 | chr5D.!!$R3 | 3692 |
1 | TraesCS5D01G324600 | chr5B | 503115034 | 503118609 | 3575 | True | 1546.0 | 2833 | 92.2980 | 727 | 2737 | 2 | chr5B.!!$R2 | 2010 |
2 | TraesCS5D01G324600 | chr5A | 529078316 | 529081684 | 3368 | True | 1036.0 | 2754 | 92.7925 | 747 | 3676 | 4 | chr5A.!!$R2 | 2929 |
3 | TraesCS5D01G324600 | chr7A | 8889339 | 8890853 | 1514 | True | 1585.0 | 1585 | 85.5300 | 1142 | 2686 | 1 | chr7A.!!$R1 | 1544 |
4 | TraesCS5D01G324600 | chr7A | 26823422 | 26823938 | 516 | True | 257.0 | 257 | 76.4710 | 1148 | 1653 | 1 | chr7A.!!$R2 | 505 |
5 | TraesCS5D01G324600 | chr7D | 8380420 | 8381921 | 1501 | True | 1461.0 | 1461 | 84.2170 | 1142 | 2686 | 1 | chr7D.!!$R1 | 1544 |
6 | TraesCS5D01G324600 | chr7D | 8452724 | 8454246 | 1522 | True | 1435.0 | 1435 | 83.8220 | 1139 | 2694 | 1 | chr7D.!!$R2 | 1555 |
7 | TraesCS5D01G324600 | chr4A | 731380614 | 731381532 | 918 | False | 935.0 | 935 | 85.0270 | 1738 | 2671 | 1 | chr4A.!!$F3 | 933 |
8 | TraesCS5D01G324600 | chr2A | 13003243 | 13004706 | 1463 | True | 765.0 | 765 | 76.6820 | 1141 | 2604 | 1 | chr2A.!!$R1 | 1463 |
9 | TraesCS5D01G324600 | chr2A | 544331859 | 544333294 | 1435 | False | 662.0 | 662 | 75.6590 | 1142 | 2582 | 1 | chr2A.!!$F3 | 1440 |
10 | TraesCS5D01G324600 | chr2A | 448153770 | 448154600 | 830 | False | 279.0 | 279 | 73.5260 | 1768 | 2612 | 1 | chr2A.!!$F2 | 844 |
11 | TraesCS5D01G324600 | chr2A | 13067554 | 13068365 | 811 | True | 243.0 | 243 | 72.8470 | 1798 | 2609 | 1 | chr2A.!!$R2 | 811 |
12 | TraesCS5D01G324600 | chr2B | 19101090 | 19102541 | 1451 | True | 538.0 | 538 | 74.0640 | 1148 | 2605 | 1 | chr2B.!!$R2 | 1457 |
13 | TraesCS5D01G324600 | chr2B | 481899864 | 481900702 | 838 | False | 431.0 | 431 | 76.5860 | 1738 | 2582 | 1 | chr2B.!!$F4 | 844 |
14 | TraesCS5D01G324600 | chr2B | 405262972 | 405263796 | 824 | False | 276.0 | 276 | 73.5120 | 1777 | 2612 | 1 | chr2B.!!$F2 | 835 |
15 | TraesCS5D01G324600 | chr3D | 561766339 | 561766936 | 597 | False | 324.0 | 516 | 90.4120 | 1 | 726 | 2 | chr3D.!!$F4 | 725 |
16 | TraesCS5D01G324600 | chr6B | 674327862 | 674328562 | 700 | False | 370.0 | 370 | 76.9440 | 1821 | 2533 | 1 | chr6B.!!$F2 | 712 |
17 | TraesCS5D01G324600 | chr6B | 612744627 | 612745133 | 506 | True | 302.0 | 302 | 77.5590 | 1139 | 1641 | 1 | chr6B.!!$R2 | 502 |
18 | TraesCS5D01G324600 | chr2D | 337923087 | 337924528 | 1441 | False | 488.0 | 488 | 73.5250 | 1148 | 2604 | 1 | chr2D.!!$F3 | 1456 |
19 | TraesCS5D01G324600 | chr2D | 406261413 | 406262251 | 838 | False | 425.0 | 425 | 76.4160 | 1738 | 2582 | 1 | chr2D.!!$F4 | 844 |
20 | TraesCS5D01G324600 | chr6D | 446103372 | 446104202 | 830 | False | 388.0 | 388 | 75.6130 | 1740 | 2582 | 1 | chr6D.!!$F6 | 842 |
21 | TraesCS5D01G324600 | chr6A | 592812967 | 592817843 | 4876 | True | 304.5 | 339 | 75.1325 | 1821 | 2582 | 2 | chr6A.!!$R2 | 761 |
22 | TraesCS5D01G324600 | chr1A | 53996849 | 53997354 | 505 | True | 279.0 | 279 | 76.9980 | 1145 | 1649 | 1 | chr1A.!!$R1 | 504 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
702 | 706 | 0.027063 | ACAAAAGCGTCGTCCGTTTG | 59.973 | 50.0 | 8.77 | 8.77 | 39.19 | 2.93 | F |
1111 | 2964 | 0.320374 | AAGCTCCATCGACGAACCAA | 59.680 | 50.0 | 0.00 | 0.00 | 0.00 | 3.67 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1596 | 3478 | 0.528684 | CGATGAGAGGGCGGAAGTTC | 60.529 | 60.000 | 0.0 | 0.0 | 0.00 | 3.01 | R |
2874 | 9089 | 1.201647 | GGCTCACTACAACAGCTACGA | 59.798 | 52.381 | 0.0 | 0.0 | 33.38 | 3.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
65 | 66 | 1.572085 | CCTGGAGCACGCAGAAACTG | 61.572 | 60.000 | 0.00 | 0.00 | 34.12 | 3.16 |
68 | 69 | 1.571460 | GAGCACGCAGAAACTGTGG | 59.429 | 57.895 | 15.06 | 6.79 | 45.11 | 4.17 |
82 | 83 | 0.979665 | CTGTGGGAGGTGATGACTGT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
137 | 138 | 1.153628 | GCGCCTGGAACGTCTGTAT | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
146 | 147 | 3.118775 | TGGAACGTCTGTATGATCAAGGG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
177 | 178 | 1.168714 | GGGTGAGAATGTTGTGCCTC | 58.831 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
179 | 180 | 2.229792 | GGTGAGAATGTTGTGCCTCAA | 58.770 | 47.619 | 0.00 | 0.00 | 37.40 | 3.02 |
197 | 198 | 0.324943 | AACATGGAGTAGCGGCAACT | 59.675 | 50.000 | 1.45 | 0.00 | 0.00 | 3.16 |
204 | 205 | 2.488153 | GGAGTAGCGGCAACTTTTGAAT | 59.512 | 45.455 | 1.45 | 0.00 | 0.00 | 2.57 |
254 | 255 | 1.606668 | GATTGGGAAACTCACGTGCAA | 59.393 | 47.619 | 11.67 | 7.83 | 0.00 | 4.08 |
305 | 306 | 2.233431 | GGCTCATGTTGGCAACCAATAA | 59.767 | 45.455 | 26.31 | 8.83 | 45.80 | 1.40 |
329 | 330 | 5.593679 | TGTATCTTCTTTTACTCCCTCCG | 57.406 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
330 | 331 | 5.021458 | TGTATCTTCTTTTACTCCCTCCGT | 58.979 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
331 | 332 | 5.482878 | TGTATCTTCTTTTACTCCCTCCGTT | 59.517 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
332 | 333 | 4.532314 | TCTTCTTTTACTCCCTCCGTTC | 57.468 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
333 | 334 | 3.260128 | TCTTCTTTTACTCCCTCCGTTCC | 59.740 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
334 | 335 | 2.898662 | TCTTTTACTCCCTCCGTTCCT | 58.101 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
335 | 336 | 4.051661 | TCTTTTACTCCCTCCGTTCCTA | 57.948 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
336 | 337 | 4.419282 | TCTTTTACTCCCTCCGTTCCTAA | 58.581 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
337 | 338 | 4.840115 | TCTTTTACTCCCTCCGTTCCTAAA | 59.160 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
338 | 339 | 5.486419 | TCTTTTACTCCCTCCGTTCCTAAAT | 59.514 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
339 | 340 | 6.669154 | TCTTTTACTCCCTCCGTTCCTAAATA | 59.331 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
340 | 341 | 7.346436 | TCTTTTACTCCCTCCGTTCCTAAATAT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
341 | 342 | 7.441903 | TTTACTCCCTCCGTTCCTAAATATT | 57.558 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
342 | 343 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
343 | 344 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
344 | 345 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
345 | 346 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
346 | 347 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
347 | 348 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
348 | 349 | 6.260271 | CCCTCCGTTCCTAAATATTTGTCTTC | 59.740 | 42.308 | 11.05 | 0.00 | 0.00 | 2.87 |
349 | 350 | 6.260271 | CCTCCGTTCCTAAATATTTGTCTTCC | 59.740 | 42.308 | 11.05 | 0.00 | 0.00 | 3.46 |
350 | 351 | 6.954232 | TCCGTTCCTAAATATTTGTCTTCCT | 58.046 | 36.000 | 11.05 | 0.00 | 0.00 | 3.36 |
351 | 352 | 8.081517 | TCCGTTCCTAAATATTTGTCTTCCTA | 57.918 | 34.615 | 11.05 | 0.00 | 0.00 | 2.94 |
352 | 353 | 8.202137 | TCCGTTCCTAAATATTTGTCTTCCTAG | 58.798 | 37.037 | 11.05 | 0.00 | 0.00 | 3.02 |
353 | 354 | 8.202137 | CCGTTCCTAAATATTTGTCTTCCTAGA | 58.798 | 37.037 | 11.05 | 0.00 | 0.00 | 2.43 |
368 | 369 | 7.067496 | TCTTCCTAGACATTTCAAACAGACT | 57.933 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
369 | 370 | 6.931281 | TCTTCCTAGACATTTCAAACAGACTG | 59.069 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
370 | 371 | 4.997395 | TCCTAGACATTTCAAACAGACTGC | 59.003 | 41.667 | 1.25 | 0.00 | 0.00 | 4.40 |
371 | 372 | 4.154918 | CCTAGACATTTCAAACAGACTGCC | 59.845 | 45.833 | 1.25 | 0.00 | 0.00 | 4.85 |
372 | 373 | 3.554934 | AGACATTTCAAACAGACTGCCA | 58.445 | 40.909 | 1.25 | 0.00 | 0.00 | 4.92 |
373 | 374 | 3.316308 | AGACATTTCAAACAGACTGCCAC | 59.684 | 43.478 | 1.25 | 0.00 | 0.00 | 5.01 |
374 | 375 | 3.023119 | ACATTTCAAACAGACTGCCACA | 58.977 | 40.909 | 1.25 | 0.00 | 0.00 | 4.17 |
375 | 376 | 3.638160 | ACATTTCAAACAGACTGCCACAT | 59.362 | 39.130 | 1.25 | 0.00 | 0.00 | 3.21 |
376 | 377 | 4.826733 | ACATTTCAAACAGACTGCCACATA | 59.173 | 37.500 | 1.25 | 0.00 | 0.00 | 2.29 |
377 | 378 | 4.829064 | TTTCAAACAGACTGCCACATAC | 57.171 | 40.909 | 1.25 | 0.00 | 0.00 | 2.39 |
378 | 379 | 3.483808 | TCAAACAGACTGCCACATACA | 57.516 | 42.857 | 1.25 | 0.00 | 0.00 | 2.29 |
379 | 380 | 3.402110 | TCAAACAGACTGCCACATACAG | 58.598 | 45.455 | 1.25 | 0.00 | 41.08 | 2.74 |
380 | 381 | 3.070878 | TCAAACAGACTGCCACATACAGA | 59.929 | 43.478 | 1.25 | 0.00 | 38.55 | 3.41 |
381 | 382 | 3.988976 | AACAGACTGCCACATACAGAT | 57.011 | 42.857 | 1.25 | 0.00 | 38.55 | 2.90 |
382 | 383 | 3.257469 | ACAGACTGCCACATACAGATG | 57.743 | 47.619 | 1.25 | 0.00 | 38.55 | 2.90 |
384 | 385 | 3.769300 | ACAGACTGCCACATACAGATGTA | 59.231 | 43.478 | 1.25 | 0.00 | 44.82 | 2.29 |
385 | 386 | 4.406972 | ACAGACTGCCACATACAGATGTAT | 59.593 | 41.667 | 1.25 | 0.00 | 44.82 | 2.29 |
424 | 425 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
425 | 426 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
426 | 427 | 5.412594 | GTGTAGATTCACTCATTTTGCTCCA | 59.587 | 40.000 | 0.00 | 0.00 | 35.68 | 3.86 |
427 | 428 | 6.094603 | GTGTAGATTCACTCATTTTGCTCCAT | 59.905 | 38.462 | 0.00 | 0.00 | 35.68 | 3.41 |
428 | 429 | 7.280876 | GTGTAGATTCACTCATTTTGCTCCATA | 59.719 | 37.037 | 0.00 | 0.00 | 35.68 | 2.74 |
429 | 430 | 7.994911 | TGTAGATTCACTCATTTTGCTCCATAT | 59.005 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
430 | 431 | 7.273320 | AGATTCACTCATTTTGCTCCATATG | 57.727 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
431 | 432 | 6.832384 | AGATTCACTCATTTTGCTCCATATGT | 59.168 | 34.615 | 1.24 | 0.00 | 0.00 | 2.29 |
432 | 433 | 7.994911 | AGATTCACTCATTTTGCTCCATATGTA | 59.005 | 33.333 | 1.24 | 0.00 | 0.00 | 2.29 |
433 | 434 | 7.558161 | TTCACTCATTTTGCTCCATATGTAG | 57.442 | 36.000 | 1.24 | 0.00 | 0.00 | 2.74 |
434 | 435 | 6.653020 | TCACTCATTTTGCTCCATATGTAGT | 58.347 | 36.000 | 1.24 | 0.00 | 0.00 | 2.73 |
435 | 436 | 6.763135 | TCACTCATTTTGCTCCATATGTAGTC | 59.237 | 38.462 | 1.24 | 0.00 | 0.00 | 2.59 |
436 | 437 | 6.539826 | CACTCATTTTGCTCCATATGTAGTCA | 59.460 | 38.462 | 1.24 | 0.00 | 0.00 | 3.41 |
437 | 438 | 6.540189 | ACTCATTTTGCTCCATATGTAGTCAC | 59.460 | 38.462 | 1.24 | 0.00 | 0.00 | 3.67 |
438 | 439 | 6.653020 | TCATTTTGCTCCATATGTAGTCACT | 58.347 | 36.000 | 1.24 | 0.00 | 0.00 | 3.41 |
439 | 440 | 7.112122 | TCATTTTGCTCCATATGTAGTCACTT | 58.888 | 34.615 | 1.24 | 0.00 | 0.00 | 3.16 |
440 | 441 | 6.741992 | TTTTGCTCCATATGTAGTCACTTG | 57.258 | 37.500 | 1.24 | 0.00 | 0.00 | 3.16 |
441 | 442 | 4.406648 | TGCTCCATATGTAGTCACTTGG | 57.593 | 45.455 | 1.24 | 0.00 | 33.09 | 3.61 |
442 | 443 | 3.774766 | TGCTCCATATGTAGTCACTTGGT | 59.225 | 43.478 | 1.24 | 0.00 | 33.38 | 3.67 |
443 | 444 | 4.122776 | GCTCCATATGTAGTCACTTGGTG | 58.877 | 47.826 | 1.24 | 0.00 | 33.38 | 4.17 |
444 | 445 | 4.141937 | GCTCCATATGTAGTCACTTGGTGA | 60.142 | 45.833 | 1.24 | 0.00 | 40.50 | 4.02 |
445 | 446 | 5.626809 | GCTCCATATGTAGTCACTTGGTGAA | 60.627 | 44.000 | 1.24 | 0.00 | 44.49 | 3.18 |
446 | 447 | 6.367374 | TCCATATGTAGTCACTTGGTGAAA | 57.633 | 37.500 | 1.24 | 0.00 | 44.49 | 2.69 |
447 | 448 | 6.957631 | TCCATATGTAGTCACTTGGTGAAAT | 58.042 | 36.000 | 1.24 | 0.00 | 44.49 | 2.17 |
448 | 449 | 8.084985 | TCCATATGTAGTCACTTGGTGAAATA | 57.915 | 34.615 | 1.24 | 0.00 | 44.49 | 1.40 |
449 | 450 | 8.713971 | TCCATATGTAGTCACTTGGTGAAATAT | 58.286 | 33.333 | 1.24 | 1.65 | 44.49 | 1.28 |
450 | 451 | 8.993121 | CCATATGTAGTCACTTGGTGAAATATC | 58.007 | 37.037 | 1.24 | 0.00 | 44.49 | 1.63 |
451 | 452 | 9.770097 | CATATGTAGTCACTTGGTGAAATATCT | 57.230 | 33.333 | 1.77 | 0.00 | 44.49 | 1.98 |
454 | 455 | 8.589701 | TGTAGTCACTTGGTGAAATATCTAGA | 57.410 | 34.615 | 0.00 | 0.00 | 44.49 | 2.43 |
455 | 456 | 9.031537 | TGTAGTCACTTGGTGAAATATCTAGAA | 57.968 | 33.333 | 0.00 | 0.00 | 44.49 | 2.10 |
456 | 457 | 9.871238 | GTAGTCACTTGGTGAAATATCTAGAAA | 57.129 | 33.333 | 0.00 | 0.00 | 44.49 | 2.52 |
458 | 459 | 8.816894 | AGTCACTTGGTGAAATATCTAGAAAGA | 58.183 | 33.333 | 0.00 | 0.00 | 44.49 | 2.52 |
459 | 460 | 8.874816 | GTCACTTGGTGAAATATCTAGAAAGAC | 58.125 | 37.037 | 0.00 | 0.00 | 44.49 | 3.01 |
460 | 461 | 8.593679 | TCACTTGGTGAAATATCTAGAAAGACA | 58.406 | 33.333 | 0.00 | 0.00 | 39.78 | 3.41 |
461 | 462 | 9.219603 | CACTTGGTGAAATATCTAGAAAGACAA | 57.780 | 33.333 | 0.00 | 0.00 | 35.23 | 3.18 |
462 | 463 | 9.793259 | ACTTGGTGAAATATCTAGAAAGACAAA | 57.207 | 29.630 | 0.00 | 0.00 | 33.57 | 2.83 |
475 | 476 | 9.595823 | TCTAGAAAGACAAATATTTAGGAACGG | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
476 | 477 | 9.595823 | CTAGAAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
477 | 478 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
478 | 479 | 7.553044 | AGAAAGACAAATATTTAGGAACGGAGG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
479 | 480 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
480 | 481 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
481 | 482 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
482 | 483 | 5.191124 | ACAAATATTTAGGAACGGAGGGAGT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
483 | 484 | 6.384886 | ACAAATATTTAGGAACGGAGGGAGTA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
484 | 485 | 7.072076 | ACAAATATTTAGGAACGGAGGGAGTAT | 59.928 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
485 | 486 | 7.628501 | AATATTTAGGAACGGAGGGAGTATT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
486 | 487 | 5.970501 | ATTTAGGAACGGAGGGAGTATTT | 57.029 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
487 | 488 | 4.748277 | TTAGGAACGGAGGGAGTATTTG | 57.252 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
525 | 526 | 8.749841 | TGTGAAACATTTTTATTTGTATCCGG | 57.250 | 30.769 | 0.00 | 0.00 | 45.67 | 5.14 |
540 | 541 | 7.775397 | TTGTATCCGGCTTGTAAAACTATAC | 57.225 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
574 | 578 | 5.965334 | CGGTGAACTATGTTTGACAATATGC | 59.035 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
589 | 593 | 7.097834 | TGACAATATGCTTGAATGCAAATCAA | 58.902 | 30.769 | 15.13 | 15.13 | 46.61 | 2.57 |
602 | 606 | 9.327628 | TGAATGCAAATCAATGTAATATTTGGG | 57.672 | 29.630 | 3.28 | 0.00 | 39.74 | 4.12 |
603 | 607 | 9.328845 | GAATGCAAATCAATGTAATATTTGGGT | 57.671 | 29.630 | 0.00 | 0.00 | 39.74 | 4.51 |
604 | 608 | 8.891671 | ATGCAAATCAATGTAATATTTGGGTC | 57.108 | 30.769 | 0.00 | 0.00 | 39.74 | 4.46 |
605 | 609 | 6.977502 | TGCAAATCAATGTAATATTTGGGTCG | 59.022 | 34.615 | 0.00 | 0.00 | 39.74 | 4.79 |
606 | 610 | 6.420604 | GCAAATCAATGTAATATTTGGGTCGG | 59.579 | 38.462 | 0.00 | 0.00 | 39.74 | 4.79 |
607 | 611 | 5.705609 | ATCAATGTAATATTTGGGTCGGC | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
608 | 612 | 3.562141 | TCAATGTAATATTTGGGTCGGCG | 59.438 | 43.478 | 0.00 | 0.00 | 0.00 | 6.46 |
609 | 613 | 2.695127 | TGTAATATTTGGGTCGGCGT | 57.305 | 45.000 | 6.85 | 0.00 | 0.00 | 5.68 |
610 | 614 | 2.281517 | TGTAATATTTGGGTCGGCGTG | 58.718 | 47.619 | 6.85 | 0.00 | 0.00 | 5.34 |
611 | 615 | 2.282407 | GTAATATTTGGGTCGGCGTGT | 58.718 | 47.619 | 6.85 | 0.00 | 0.00 | 4.49 |
612 | 616 | 1.828979 | AATATTTGGGTCGGCGTGTT | 58.171 | 45.000 | 6.85 | 0.00 | 0.00 | 3.32 |
613 | 617 | 2.695127 | ATATTTGGGTCGGCGTGTTA | 57.305 | 45.000 | 6.85 | 0.00 | 0.00 | 2.41 |
614 | 618 | 2.012937 | TATTTGGGTCGGCGTGTTAG | 57.987 | 50.000 | 6.85 | 0.00 | 0.00 | 2.34 |
615 | 619 | 0.675522 | ATTTGGGTCGGCGTGTTAGG | 60.676 | 55.000 | 6.85 | 0.00 | 0.00 | 2.69 |
616 | 620 | 3.887335 | TTGGGTCGGCGTGTTAGGC | 62.887 | 63.158 | 6.85 | 0.00 | 0.00 | 3.93 |
623 | 627 | 3.788766 | GCGTGTTAGGCCGTGCTG | 61.789 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
624 | 628 | 3.788766 | CGTGTTAGGCCGTGCTGC | 61.789 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
634 | 638 | 3.055719 | CGTGCTGCCGACCCAAAT | 61.056 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
635 | 639 | 2.877691 | GTGCTGCCGACCCAAATC | 59.122 | 61.111 | 0.00 | 0.00 | 0.00 | 2.17 |
636 | 640 | 1.675641 | GTGCTGCCGACCCAAATCT | 60.676 | 57.895 | 0.00 | 0.00 | 0.00 | 2.40 |
637 | 641 | 0.392461 | GTGCTGCCGACCCAAATCTA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
638 | 642 | 0.326595 | TGCTGCCGACCCAAATCTAA | 59.673 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
639 | 643 | 1.271652 | TGCTGCCGACCCAAATCTAAA | 60.272 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
640 | 644 | 1.816224 | GCTGCCGACCCAAATCTAAAA | 59.184 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
641 | 645 | 2.159379 | GCTGCCGACCCAAATCTAAAAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
642 | 646 | 3.343617 | CTGCCGACCCAAATCTAAAAGA | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
643 | 647 | 3.343617 | TGCCGACCCAAATCTAAAAGAG | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
644 | 648 | 2.683362 | GCCGACCCAAATCTAAAAGAGG | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
645 | 649 | 3.279434 | CCGACCCAAATCTAAAAGAGGG | 58.721 | 50.000 | 0.00 | 0.00 | 42.07 | 4.30 |
646 | 650 | 2.683362 | CGACCCAAATCTAAAAGAGGGC | 59.317 | 50.000 | 0.00 | 0.00 | 39.97 | 5.19 |
647 | 651 | 2.683362 | GACCCAAATCTAAAAGAGGGCG | 59.317 | 50.000 | 0.00 | 0.00 | 39.97 | 6.13 |
648 | 652 | 2.024414 | CCCAAATCTAAAAGAGGGCGG | 58.976 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
649 | 653 | 1.405463 | CCAAATCTAAAAGAGGGCGGC | 59.595 | 52.381 | 0.00 | 0.00 | 0.00 | 6.53 |
650 | 654 | 1.405463 | CAAATCTAAAAGAGGGCGGCC | 59.595 | 52.381 | 22.67 | 22.67 | 0.00 | 6.13 |
651 | 655 | 0.463833 | AATCTAAAAGAGGGCGGCCG | 60.464 | 55.000 | 24.05 | 24.05 | 0.00 | 6.13 |
652 | 656 | 2.942648 | ATCTAAAAGAGGGCGGCCGC | 62.943 | 60.000 | 41.63 | 41.63 | 41.06 | 6.53 |
679 | 683 | 2.434359 | GGCCGACCCGACAAAGAG | 60.434 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
680 | 684 | 3.119096 | GCCGACCCGACAAAGAGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
681 | 685 | 2.809601 | CCGACCCGACAAAGAGCG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
682 | 686 | 2.809601 | CGACCCGACAAAGAGCGG | 60.810 | 66.667 | 0.00 | 0.00 | 46.80 | 5.52 |
689 | 693 | 2.300623 | CGACAAAGAGCGGACAAAAG | 57.699 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
690 | 694 | 1.660333 | CGACAAAGAGCGGACAAAAGC | 60.660 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
691 | 695 | 0.307760 | ACAAAGAGCGGACAAAAGCG | 59.692 | 50.000 | 0.00 | 0.00 | 38.61 | 4.68 |
692 | 696 | 0.307760 | CAAAGAGCGGACAAAAGCGT | 59.692 | 50.000 | 0.00 | 0.00 | 38.61 | 5.07 |
693 | 697 | 0.586802 | AAAGAGCGGACAAAAGCGTC | 59.413 | 50.000 | 0.00 | 0.00 | 38.61 | 5.19 |
694 | 698 | 1.557443 | AAGAGCGGACAAAAGCGTCG | 61.557 | 55.000 | 0.00 | 0.00 | 36.73 | 5.12 |
695 | 699 | 2.279918 | AGCGGACAAAAGCGTCGT | 60.280 | 55.556 | 0.00 | 0.00 | 36.73 | 4.34 |
696 | 700 | 2.170273 | GCGGACAAAAGCGTCGTC | 59.830 | 61.111 | 0.00 | 0.00 | 36.73 | 4.20 |
697 | 701 | 2.851104 | CGGACAAAAGCGTCGTCC | 59.149 | 61.111 | 10.10 | 10.10 | 44.79 | 4.79 |
698 | 702 | 2.851104 | GGACAAAAGCGTCGTCCG | 59.149 | 61.111 | 5.63 | 0.00 | 39.86 | 4.79 |
699 | 703 | 1.952635 | GGACAAAAGCGTCGTCCGT | 60.953 | 57.895 | 5.63 | 0.00 | 39.86 | 4.69 |
700 | 704 | 1.493134 | GGACAAAAGCGTCGTCCGTT | 61.493 | 55.000 | 5.63 | 0.00 | 39.86 | 4.44 |
701 | 705 | 0.302589 | GACAAAAGCGTCGTCCGTTT | 59.697 | 50.000 | 0.00 | 0.00 | 42.10 | 3.60 |
702 | 706 | 0.027063 | ACAAAAGCGTCGTCCGTTTG | 59.973 | 50.000 | 8.77 | 8.77 | 39.19 | 2.93 |
703 | 707 | 0.656205 | CAAAAGCGTCGTCCGTTTGG | 60.656 | 55.000 | 0.00 | 0.00 | 39.19 | 3.28 |
704 | 708 | 0.810823 | AAAAGCGTCGTCCGTTTGGA | 60.811 | 50.000 | 0.00 | 0.00 | 39.19 | 3.53 |
712 | 716 | 4.104183 | TCCGTTTGGATCGGGCCC | 62.104 | 66.667 | 13.57 | 13.57 | 46.82 | 5.80 |
714 | 718 | 4.770874 | CGTTTGGATCGGGCCCGT | 62.771 | 66.667 | 41.57 | 29.26 | 40.74 | 5.28 |
715 | 719 | 2.360726 | GTTTGGATCGGGCCCGTT | 60.361 | 61.111 | 41.57 | 34.87 | 40.74 | 4.44 |
716 | 720 | 2.360600 | TTTGGATCGGGCCCGTTG | 60.361 | 61.111 | 41.57 | 17.04 | 40.74 | 4.10 |
717 | 721 | 3.929334 | TTTGGATCGGGCCCGTTGG | 62.929 | 63.158 | 41.57 | 16.62 | 40.74 | 3.77 |
719 | 723 | 4.547367 | GGATCGGGCCCGTTGGAG | 62.547 | 72.222 | 41.57 | 15.37 | 40.74 | 3.86 |
720 | 724 | 3.782443 | GATCGGGCCCGTTGGAGT | 61.782 | 66.667 | 41.57 | 21.87 | 40.74 | 3.85 |
721 | 725 | 3.325201 | GATCGGGCCCGTTGGAGTT | 62.325 | 63.158 | 41.57 | 19.24 | 40.74 | 3.01 |
722 | 726 | 3.622060 | ATCGGGCCCGTTGGAGTTG | 62.622 | 63.158 | 41.57 | 12.90 | 40.74 | 3.16 |
724 | 728 | 4.660938 | GGGCCCGTTGGAGTTGCT | 62.661 | 66.667 | 5.69 | 0.00 | 0.00 | 3.91 |
725 | 729 | 3.056328 | GGCCCGTTGGAGTTGCTC | 61.056 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
744 | 748 | 1.743321 | CGAGGATGACCAGGAGAGCC | 61.743 | 65.000 | 0.00 | 0.00 | 38.94 | 4.70 |
823 | 827 | 2.306341 | ATCCGACACTCAATCTGCTG | 57.694 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
879 | 883 | 3.006217 | TCTGATCTGCCAATAGGATCACG | 59.994 | 47.826 | 0.00 | 0.00 | 40.26 | 4.35 |
883 | 887 | 2.766263 | TCTGCCAATAGGATCACGAGTT | 59.234 | 45.455 | 0.00 | 0.00 | 36.89 | 3.01 |
885 | 889 | 2.766263 | TGCCAATAGGATCACGAGTTCT | 59.234 | 45.455 | 0.00 | 0.00 | 36.89 | 3.01 |
906 | 910 | 6.207691 | TCTTCTCATCATTCGTGTCACATA | 57.792 | 37.500 | 3.42 | 0.00 | 0.00 | 2.29 |
912 | 916 | 8.239998 | TCTCATCATTCGTGTCACATATCTATC | 58.760 | 37.037 | 3.42 | 0.00 | 0.00 | 2.08 |
915 | 919 | 7.930513 | TCATTCGTGTCACATATCTATCAAC | 57.069 | 36.000 | 3.42 | 0.00 | 0.00 | 3.18 |
923 | 927 | 5.694006 | GTCACATATCTATCAACTCACAGCC | 59.306 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1000 | 2846 | 4.440802 | CGTTGGAAATTCCCAAGTCAAACA | 60.441 | 41.667 | 9.87 | 0.00 | 45.95 | 2.83 |
1001 | 2847 | 5.610398 | GTTGGAAATTCCCAAGTCAAACAT | 58.390 | 37.500 | 9.87 | 0.00 | 45.95 | 2.71 |
1035 | 2884 | 5.579904 | CGCTGCATATTGTATCAGCTATCTT | 59.420 | 40.000 | 10.70 | 0.00 | 46.95 | 2.40 |
1040 | 2889 | 6.036953 | GCATATTGTATCAGCTATCTTCTGGC | 59.963 | 42.308 | 0.00 | 0.00 | 32.63 | 4.85 |
1045 | 2894 | 2.470990 | TCAGCTATCTTCTGGCTTCCA | 58.529 | 47.619 | 0.00 | 0.00 | 40.15 | 3.53 |
1060 | 2909 | 4.069232 | CCAGTCTTCGCCCGCTGA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1074 | 2923 | 2.860735 | CCCGCTGAGTTTCTTATTCGAG | 59.139 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1102 | 2955 | 2.227388 | ACAAAGCAAGAAAGCTCCATCG | 59.773 | 45.455 | 0.00 | 0.00 | 45.89 | 3.84 |
1111 | 2964 | 0.320374 | AAGCTCCATCGACGAACCAA | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1275 | 3128 | 1.661480 | CACCGAGTACAACCACCGA | 59.339 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
1437 | 3301 | 0.332972 | GCCTCCCCCACTTCAAGAAT | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1596 | 3478 | 2.426023 | GGCTACATGGGCTACCGG | 59.574 | 66.667 | 0.00 | 0.00 | 40.75 | 5.28 |
1695 | 3627 | 5.819825 | AATTTTGACTCGGCCTAAATCTC | 57.180 | 39.130 | 0.00 | 0.00 | 0.00 | 2.75 |
1934 | 3914 | 2.684881 | GTCATCATCAACACCATGGACC | 59.315 | 50.000 | 21.47 | 0.00 | 0.00 | 4.46 |
2674 | 8863 | 1.741706 | CTCATCCATGGTGTGTTGCTC | 59.258 | 52.381 | 12.58 | 0.00 | 0.00 | 4.26 |
2715 | 8904 | 4.310769 | CTTCTCTTTTCTTTCCAGCTCGA | 58.689 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
2719 | 8908 | 3.056821 | TCTTTTCTTTCCAGCTCGATCGA | 60.057 | 43.478 | 18.32 | 18.32 | 0.00 | 3.59 |
2723 | 8912 | 0.606096 | TTTCCAGCTCGATCGACCAA | 59.394 | 50.000 | 15.15 | 0.00 | 0.00 | 3.67 |
2737 | 8926 | 1.731709 | CGACCAATGATCGAGCAAACA | 59.268 | 47.619 | 7.76 | 0.00 | 42.25 | 2.83 |
2750 | 8939 | 0.096976 | GCAAACATGATCGGGACACG | 59.903 | 55.000 | 0.00 | 0.00 | 46.11 | 4.49 |
2830 | 9045 | 0.517316 | GGTTTGCACGCTCCTAACAG | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2870 | 9085 | 3.542712 | CGAAATGGGATTCGCTAATGG | 57.457 | 47.619 | 2.19 | 0.00 | 44.69 | 3.16 |
2874 | 9089 | 5.660460 | GAAATGGGATTCGCTAATGGTTTT | 58.340 | 37.500 | 2.19 | 0.00 | 0.00 | 2.43 |
2892 | 9238 | 4.150098 | GGTTTTCGTAGCTGTTGTAGTGAG | 59.850 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2895 | 9241 | 1.736032 | CGTAGCTGTTGTAGTGAGCCC | 60.736 | 57.143 | 0.00 | 0.00 | 32.86 | 5.19 |
2899 | 9245 | 1.614317 | GCTGTTGTAGTGAGCCCCATT | 60.614 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2946 | 9292 | 6.592607 | GTGTGGTCCGTCTATTCAAAAGATAA | 59.407 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
3039 | 9388 | 7.817418 | TGGTTTACTTGATTGATATAAGGGC | 57.183 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3040 | 9389 | 7.582719 | TGGTTTACTTGATTGATATAAGGGCT | 58.417 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
3041 | 9390 | 7.719633 | TGGTTTACTTGATTGATATAAGGGCTC | 59.280 | 37.037 | 0.00 | 0.00 | 0.00 | 4.70 |
3042 | 9391 | 7.095187 | GGTTTACTTGATTGATATAAGGGCTCG | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 5.03 |
3061 | 9424 | 4.328712 | GCTCGGAGAAGAATGAAAGAACTC | 59.671 | 45.833 | 9.69 | 0.00 | 34.09 | 3.01 |
3089 | 9452 | 3.192466 | GCCAACCAATCTGCATTCATTC | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
3091 | 9454 | 4.178540 | CCAACCAATCTGCATTCATTCAC | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3116 | 9479 | 7.968405 | ACGGCAGAAATTTACATGATAACTTTC | 59.032 | 33.333 | 0.00 | 10.29 | 0.00 | 2.62 |
3145 | 9508 | 3.133542 | TGAGACATGTGGCTAGAAGGATG | 59.866 | 47.826 | 1.15 | 0.00 | 30.09 | 3.51 |
3173 | 9557 | 4.319766 | CGCGGAAGATTGATATTTCAAGGG | 60.320 | 45.833 | 0.00 | 0.00 | 44.75 | 3.95 |
3195 | 9579 | 0.034337 | TTTGACTCACTACCGTGGCC | 59.966 | 55.000 | 0.00 | 0.00 | 41.53 | 5.36 |
3216 | 9600 | 4.218417 | GCCTTTCCTCTTTGAGTTATTGCA | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 4.08 |
3254 | 9638 | 3.244976 | CAAAATTTCACTCGATGGGTGC | 58.755 | 45.455 | 0.00 | 0.00 | 34.97 | 5.01 |
3260 | 9644 | 2.083774 | TCACTCGATGGGTGCAAATTC | 58.916 | 47.619 | 0.00 | 0.00 | 34.97 | 2.17 |
3298 | 9682 | 5.527582 | GAGCACGAAGGTGATTATTAATGGT | 59.472 | 40.000 | 0.00 | 0.00 | 44.11 | 3.55 |
3309 | 9693 | 8.621286 | GGTGATTATTAATGGTTGTACAAGGAG | 58.379 | 37.037 | 8.98 | 0.00 | 0.00 | 3.69 |
3354 | 9738 | 4.144727 | AGATCCCGTCTCCCCGCT | 62.145 | 66.667 | 0.00 | 0.00 | 28.45 | 5.52 |
3360 | 9744 | 2.829003 | CGTCTCCCCGCTGCTCTA | 60.829 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3361 | 9745 | 2.809010 | GTCTCCCCGCTGCTCTAC | 59.191 | 66.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3408 | 9792 | 4.770795 | ACACTAATCACCAAGGCTACATC | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
3443 | 9828 | 3.036091 | TCCTCTTACCCGGGAATAACAG | 58.964 | 50.000 | 32.02 | 13.11 | 0.00 | 3.16 |
3456 | 9841 | 2.867109 | ATAACAGCAACACAGAGGCT | 57.133 | 45.000 | 0.00 | 0.00 | 38.70 | 4.58 |
3495 | 9880 | 3.396260 | TGTAGCTCTTTTTGTACGCCT | 57.604 | 42.857 | 0.00 | 0.00 | 0.00 | 5.52 |
3501 | 9886 | 1.975680 | TCTTTTTGTACGCCTCCCTCT | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
3520 | 9905 | 2.491298 | TCTGCTATCGATCTCTCATGCC | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3523 | 9908 | 2.477694 | GCTATCGATCTCTCATGCCTCG | 60.478 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
3553 | 9938 | 1.988107 | TCATTGTCTTTGGAGAGGCCT | 59.012 | 47.619 | 3.86 | 3.86 | 37.63 | 5.19 |
3555 | 9940 | 1.434188 | TTGTCTTTGGAGAGGCCTCA | 58.566 | 50.000 | 33.90 | 12.40 | 41.20 | 3.86 |
3557 | 9942 | 0.251634 | GTCTTTGGAGAGGCCTCAGG | 59.748 | 60.000 | 33.90 | 14.23 | 41.20 | 3.86 |
3572 | 9957 | 2.286872 | CTCAGGCCACATGATTGAGAC | 58.713 | 52.381 | 5.01 | 0.00 | 37.96 | 3.36 |
3592 | 9977 | 5.542779 | AGACTCAACTACACAAAGACATCC | 58.457 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3607 | 9992 | 7.014326 | ACAAAGACATCCGCTATACTCATAAGA | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
3624 | 10009 | 9.324008 | ACTCATAAGAGGATATCAAGATGACAT | 57.676 | 33.333 | 4.83 | 0.00 | 46.44 | 3.06 |
3642 | 10027 | 6.456795 | TGACATAGATAGAGTTGGACAGTG | 57.543 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
3676 | 10061 | 0.540365 | TTGGAGCCTTCCCTTGCTTG | 60.540 | 55.000 | 0.00 | 0.00 | 43.33 | 4.01 |
3677 | 10062 | 1.380302 | GGAGCCTTCCCTTGCTTGA | 59.620 | 57.895 | 0.00 | 0.00 | 38.11 | 3.02 |
3678 | 10063 | 0.033699 | GGAGCCTTCCCTTGCTTGAT | 60.034 | 55.000 | 0.00 | 0.00 | 38.11 | 2.57 |
3679 | 10064 | 1.387539 | GAGCCTTCCCTTGCTTGATC | 58.612 | 55.000 | 0.00 | 0.00 | 38.11 | 2.92 |
3680 | 10065 | 0.393537 | AGCCTTCCCTTGCTTGATCG | 60.394 | 55.000 | 0.00 | 0.00 | 32.94 | 3.69 |
3681 | 10066 | 1.379642 | GCCTTCCCTTGCTTGATCGG | 61.380 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3682 | 10067 | 0.749454 | CCTTCCCTTGCTTGATCGGG | 60.749 | 60.000 | 0.00 | 0.00 | 38.07 | 5.14 |
3683 | 10068 | 0.035056 | CTTCCCTTGCTTGATCGGGT | 60.035 | 55.000 | 1.57 | 0.00 | 37.92 | 5.28 |
3684 | 10069 | 0.404040 | TTCCCTTGCTTGATCGGGTT | 59.596 | 50.000 | 1.57 | 0.00 | 37.92 | 4.11 |
3685 | 10070 | 1.281419 | TCCCTTGCTTGATCGGGTTA | 58.719 | 50.000 | 1.57 | 0.00 | 37.92 | 2.85 |
3686 | 10071 | 1.631388 | TCCCTTGCTTGATCGGGTTAA | 59.369 | 47.619 | 1.57 | 0.00 | 37.92 | 2.01 |
3687 | 10072 | 2.017049 | CCCTTGCTTGATCGGGTTAAG | 58.983 | 52.381 | 0.00 | 0.00 | 31.89 | 1.85 |
3688 | 10073 | 2.355716 | CCCTTGCTTGATCGGGTTAAGA | 60.356 | 50.000 | 0.00 | 0.00 | 31.89 | 2.10 |
3689 | 10074 | 3.343617 | CCTTGCTTGATCGGGTTAAGAA | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3690 | 10075 | 3.127030 | CCTTGCTTGATCGGGTTAAGAAC | 59.873 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3691 | 10076 | 3.695830 | TGCTTGATCGGGTTAAGAACT | 57.304 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
3692 | 10077 | 4.015872 | TGCTTGATCGGGTTAAGAACTT | 57.984 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
65 | 66 | 2.154462 | CAAACAGTCATCACCTCCCAC | 58.846 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
68 | 69 | 2.549754 | CACACAAACAGTCATCACCTCC | 59.450 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
124 | 125 | 3.118775 | CCCTTGATCATACAGACGTTCCA | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
137 | 138 | 4.144297 | CCTGAAACTGAAACCCTTGATCA | 58.856 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
146 | 147 | 4.580580 | ACATTCTCACCCTGAAACTGAAAC | 59.419 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
177 | 178 | 0.447801 | GTTGCCGCTACTCCATGTTG | 59.552 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
179 | 180 | 0.324943 | AAGTTGCCGCTACTCCATGT | 59.675 | 50.000 | 7.96 | 0.00 | 0.00 | 3.21 |
197 | 198 | 8.646004 | TCATGAAATTGGGTGAACTATTCAAAA | 58.354 | 29.630 | 0.00 | 0.00 | 42.15 | 2.44 |
204 | 205 | 6.303054 | TGTCTTCATGAAATTGGGTGAACTA | 58.697 | 36.000 | 9.88 | 0.00 | 0.00 | 2.24 |
254 | 255 | 9.826574 | ATATGCTCAATTAAATCATTTTGCAGT | 57.173 | 25.926 | 0.00 | 0.00 | 30.20 | 4.40 |
305 | 306 | 6.156429 | ACGGAGGGAGTAAAAGAAGATACATT | 59.844 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
321 | 322 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
324 | 325 | 6.260271 | GGAAGACAAATATTTAGGAACGGAGG | 59.740 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
325 | 326 | 7.048512 | AGGAAGACAAATATTTAGGAACGGAG | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
326 | 327 | 6.954232 | AGGAAGACAAATATTTAGGAACGGA | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
327 | 328 | 8.202137 | TCTAGGAAGACAAATATTTAGGAACGG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
344 | 345 | 6.931281 | CAGTCTGTTTGAAATGTCTAGGAAGA | 59.069 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
345 | 346 | 6.348050 | GCAGTCTGTTTGAAATGTCTAGGAAG | 60.348 | 42.308 | 0.93 | 0.00 | 0.00 | 3.46 |
346 | 347 | 5.470098 | GCAGTCTGTTTGAAATGTCTAGGAA | 59.530 | 40.000 | 0.93 | 0.00 | 0.00 | 3.36 |
347 | 348 | 4.997395 | GCAGTCTGTTTGAAATGTCTAGGA | 59.003 | 41.667 | 0.93 | 0.00 | 0.00 | 2.94 |
348 | 349 | 4.154918 | GGCAGTCTGTTTGAAATGTCTAGG | 59.845 | 45.833 | 0.93 | 0.00 | 0.00 | 3.02 |
349 | 350 | 4.756642 | TGGCAGTCTGTTTGAAATGTCTAG | 59.243 | 41.667 | 0.93 | 0.00 | 0.00 | 2.43 |
350 | 351 | 4.515191 | GTGGCAGTCTGTTTGAAATGTCTA | 59.485 | 41.667 | 0.93 | 0.00 | 0.00 | 2.59 |
351 | 352 | 3.316308 | GTGGCAGTCTGTTTGAAATGTCT | 59.684 | 43.478 | 0.93 | 0.00 | 0.00 | 3.41 |
352 | 353 | 3.066621 | TGTGGCAGTCTGTTTGAAATGTC | 59.933 | 43.478 | 0.93 | 0.00 | 0.00 | 3.06 |
353 | 354 | 3.023119 | TGTGGCAGTCTGTTTGAAATGT | 58.977 | 40.909 | 0.93 | 0.00 | 0.00 | 2.71 |
354 | 355 | 3.713858 | TGTGGCAGTCTGTTTGAAATG | 57.286 | 42.857 | 0.93 | 0.00 | 0.00 | 2.32 |
355 | 356 | 4.826733 | TGTATGTGGCAGTCTGTTTGAAAT | 59.173 | 37.500 | 0.93 | 0.00 | 0.00 | 2.17 |
356 | 357 | 4.203226 | TGTATGTGGCAGTCTGTTTGAAA | 58.797 | 39.130 | 0.93 | 0.00 | 0.00 | 2.69 |
357 | 358 | 3.814625 | TGTATGTGGCAGTCTGTTTGAA | 58.185 | 40.909 | 0.93 | 0.00 | 0.00 | 2.69 |
358 | 359 | 3.070878 | TCTGTATGTGGCAGTCTGTTTGA | 59.929 | 43.478 | 0.93 | 0.00 | 35.60 | 2.69 |
359 | 360 | 3.402110 | TCTGTATGTGGCAGTCTGTTTG | 58.598 | 45.455 | 0.93 | 0.00 | 35.60 | 2.93 |
360 | 361 | 3.769739 | TCTGTATGTGGCAGTCTGTTT | 57.230 | 42.857 | 0.93 | 0.00 | 35.60 | 2.83 |
361 | 362 | 3.008375 | ACATCTGTATGTGGCAGTCTGTT | 59.992 | 43.478 | 0.93 | 0.00 | 44.79 | 3.16 |
362 | 363 | 2.568956 | ACATCTGTATGTGGCAGTCTGT | 59.431 | 45.455 | 0.93 | 0.00 | 44.79 | 3.41 |
363 | 364 | 3.257469 | ACATCTGTATGTGGCAGTCTG | 57.743 | 47.619 | 0.00 | 0.00 | 44.79 | 3.51 |
402 | 403 | 5.412594 | TGGAGCAAAATGAGTGAATCTACAC | 59.587 | 40.000 | 0.00 | 0.00 | 40.60 | 2.90 |
403 | 404 | 5.559770 | TGGAGCAAAATGAGTGAATCTACA | 58.440 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
404 | 405 | 6.690194 | ATGGAGCAAAATGAGTGAATCTAC | 57.310 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
405 | 406 | 7.994911 | ACATATGGAGCAAAATGAGTGAATCTA | 59.005 | 33.333 | 7.80 | 0.00 | 0.00 | 1.98 |
406 | 407 | 6.832384 | ACATATGGAGCAAAATGAGTGAATCT | 59.168 | 34.615 | 7.80 | 0.00 | 0.00 | 2.40 |
407 | 408 | 7.035840 | ACATATGGAGCAAAATGAGTGAATC | 57.964 | 36.000 | 7.80 | 0.00 | 0.00 | 2.52 |
408 | 409 | 7.776969 | ACTACATATGGAGCAAAATGAGTGAAT | 59.223 | 33.333 | 15.30 | 0.00 | 0.00 | 2.57 |
409 | 410 | 7.112122 | ACTACATATGGAGCAAAATGAGTGAA | 58.888 | 34.615 | 15.30 | 0.00 | 0.00 | 3.18 |
410 | 411 | 6.653020 | ACTACATATGGAGCAAAATGAGTGA | 58.347 | 36.000 | 15.30 | 0.00 | 0.00 | 3.41 |
411 | 412 | 6.539826 | TGACTACATATGGAGCAAAATGAGTG | 59.460 | 38.462 | 15.30 | 0.00 | 0.00 | 3.51 |
412 | 413 | 6.540189 | GTGACTACATATGGAGCAAAATGAGT | 59.460 | 38.462 | 15.30 | 0.00 | 0.00 | 3.41 |
413 | 414 | 6.765036 | AGTGACTACATATGGAGCAAAATGAG | 59.235 | 38.462 | 15.30 | 0.00 | 0.00 | 2.90 |
414 | 415 | 6.653020 | AGTGACTACATATGGAGCAAAATGA | 58.347 | 36.000 | 15.30 | 0.00 | 0.00 | 2.57 |
415 | 416 | 6.932356 | AGTGACTACATATGGAGCAAAATG | 57.068 | 37.500 | 15.30 | 0.00 | 0.00 | 2.32 |
416 | 417 | 6.319658 | CCAAGTGACTACATATGGAGCAAAAT | 59.680 | 38.462 | 15.30 | 0.00 | 37.02 | 1.82 |
417 | 418 | 5.647658 | CCAAGTGACTACATATGGAGCAAAA | 59.352 | 40.000 | 15.30 | 0.00 | 37.02 | 2.44 |
418 | 419 | 5.185454 | CCAAGTGACTACATATGGAGCAAA | 58.815 | 41.667 | 15.30 | 0.00 | 37.02 | 3.68 |
419 | 420 | 4.225042 | ACCAAGTGACTACATATGGAGCAA | 59.775 | 41.667 | 15.30 | 0.16 | 37.74 | 3.91 |
420 | 421 | 3.774766 | ACCAAGTGACTACATATGGAGCA | 59.225 | 43.478 | 15.30 | 10.95 | 37.74 | 4.26 |
421 | 422 | 4.122776 | CACCAAGTGACTACATATGGAGC | 58.877 | 47.826 | 15.30 | 8.47 | 37.74 | 4.70 |
422 | 423 | 5.598416 | TCACCAAGTGACTACATATGGAG | 57.402 | 43.478 | 13.77 | 13.77 | 37.67 | 3.86 |
423 | 424 | 6.367374 | TTTCACCAAGTGACTACATATGGA | 57.633 | 37.500 | 7.80 | 0.00 | 42.60 | 3.41 |
424 | 425 | 8.908786 | ATATTTCACCAAGTGACTACATATGG | 57.091 | 34.615 | 7.80 | 0.00 | 42.60 | 2.74 |
425 | 426 | 9.770097 | AGATATTTCACCAAGTGACTACATATG | 57.230 | 33.333 | 0.00 | 0.00 | 42.60 | 1.78 |
428 | 429 | 9.201989 | TCTAGATATTTCACCAAGTGACTACAT | 57.798 | 33.333 | 0.00 | 0.00 | 42.60 | 2.29 |
429 | 430 | 8.589701 | TCTAGATATTTCACCAAGTGACTACA | 57.410 | 34.615 | 0.00 | 0.00 | 42.60 | 2.74 |
430 | 431 | 9.871238 | TTTCTAGATATTTCACCAAGTGACTAC | 57.129 | 33.333 | 0.00 | 0.00 | 42.60 | 2.73 |
432 | 433 | 8.816894 | TCTTTCTAGATATTTCACCAAGTGACT | 58.183 | 33.333 | 0.00 | 0.00 | 42.60 | 3.41 |
433 | 434 | 8.874816 | GTCTTTCTAGATATTTCACCAAGTGAC | 58.125 | 37.037 | 0.00 | 0.00 | 36.09 | 3.67 |
434 | 435 | 8.593679 | TGTCTTTCTAGATATTTCACCAAGTGA | 58.406 | 33.333 | 0.00 | 0.00 | 35.22 | 3.41 |
435 | 436 | 8.777865 | TGTCTTTCTAGATATTTCACCAAGTG | 57.222 | 34.615 | 0.00 | 0.00 | 31.86 | 3.16 |
436 | 437 | 9.793259 | TTTGTCTTTCTAGATATTTCACCAAGT | 57.207 | 29.630 | 0.00 | 0.00 | 31.86 | 3.16 |
449 | 450 | 9.595823 | CCGTTCCTAAATATTTGTCTTTCTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
450 | 451 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
451 | 452 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
452 | 453 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
453 | 454 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
454 | 455 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
455 | 456 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
456 | 457 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
457 | 458 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
458 | 459 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
459 | 460 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
460 | 461 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
461 | 462 | 7.628501 | AATACTCCCTCCGTTCCTAAATATT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
462 | 463 | 7.072076 | ACAAATACTCCCTCCGTTCCTAAATAT | 59.928 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
463 | 464 | 6.384886 | ACAAATACTCCCTCCGTTCCTAAATA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
464 | 465 | 5.191124 | ACAAATACTCCCTCCGTTCCTAAAT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
465 | 466 | 4.533311 | ACAAATACTCCCTCCGTTCCTAAA | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
466 | 467 | 4.098894 | ACAAATACTCCCTCCGTTCCTAA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
467 | 468 | 3.716431 | ACAAATACTCCCTCCGTTCCTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
468 | 469 | 2.547990 | ACAAATACTCCCTCCGTTCCT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
469 | 470 | 3.345508 | AACAAATACTCCCTCCGTTCC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
470 | 471 | 3.119955 | GCAAACAAATACTCCCTCCGTTC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
471 | 472 | 2.817844 | GCAAACAAATACTCCCTCCGTT | 59.182 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
472 | 473 | 2.224670 | TGCAAACAAATACTCCCTCCGT | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
473 | 474 | 2.432444 | TGCAAACAAATACTCCCTCCG | 58.568 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
474 | 475 | 4.864704 | TTTGCAAACAAATACTCCCTCC | 57.135 | 40.909 | 8.05 | 0.00 | 40.84 | 4.30 |
475 | 476 | 5.842907 | AGTTTTGCAAACAAATACTCCCTC | 58.157 | 37.500 | 12.39 | 0.00 | 44.96 | 4.30 |
476 | 477 | 5.869649 | AGTTTTGCAAACAAATACTCCCT | 57.130 | 34.783 | 12.39 | 0.00 | 44.96 | 4.20 |
477 | 478 | 7.116233 | CACATAGTTTTGCAAACAAATACTCCC | 59.884 | 37.037 | 12.39 | 0.00 | 44.96 | 4.30 |
478 | 479 | 7.865385 | TCACATAGTTTTGCAAACAAATACTCC | 59.135 | 33.333 | 12.39 | 0.00 | 44.96 | 3.85 |
479 | 480 | 8.795786 | TCACATAGTTTTGCAAACAAATACTC | 57.204 | 30.769 | 12.39 | 0.00 | 44.96 | 2.59 |
480 | 481 | 9.593134 | TTTCACATAGTTTTGCAAACAAATACT | 57.407 | 25.926 | 12.39 | 14.40 | 44.96 | 2.12 |
481 | 482 | 9.631639 | GTTTCACATAGTTTTGCAAACAAATAC | 57.368 | 29.630 | 12.39 | 7.12 | 44.96 | 1.89 |
482 | 483 | 9.371136 | TGTTTCACATAGTTTTGCAAACAAATA | 57.629 | 25.926 | 12.39 | 2.21 | 44.96 | 1.40 |
483 | 484 | 8.261492 | TGTTTCACATAGTTTTGCAAACAAAT | 57.739 | 26.923 | 12.39 | 0.00 | 44.96 | 2.32 |
484 | 485 | 7.658179 | TGTTTCACATAGTTTTGCAAACAAA | 57.342 | 28.000 | 12.39 | 0.00 | 43.97 | 2.83 |
485 | 486 | 7.840342 | ATGTTTCACATAGTTTTGCAAACAA | 57.160 | 28.000 | 12.39 | 0.22 | 36.99 | 2.83 |
486 | 487 | 7.840342 | AATGTTTCACATAGTTTTGCAAACA | 57.160 | 28.000 | 12.39 | 2.84 | 37.97 | 2.83 |
487 | 488 | 9.553418 | AAAAATGTTTCACATAGTTTTGCAAAC | 57.447 | 25.926 | 12.39 | 7.48 | 37.97 | 2.93 |
554 | 555 | 9.793252 | ATTCAAGCATATTGTCAAACATAGTTC | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
589 | 593 | 2.875933 | CACGCCGACCCAAATATTACAT | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
599 | 603 | 4.382320 | GCCTAACACGCCGACCCA | 62.382 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
606 | 610 | 3.788766 | CAGCACGGCCTAACACGC | 61.789 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
607 | 611 | 3.788766 | GCAGCACGGCCTAACACG | 61.789 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
617 | 621 | 3.039202 | GATTTGGGTCGGCAGCACG | 62.039 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
618 | 622 | 0.392461 | TAGATTTGGGTCGGCAGCAC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
619 | 623 | 0.326595 | TTAGATTTGGGTCGGCAGCA | 59.673 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
620 | 624 | 1.459450 | TTTAGATTTGGGTCGGCAGC | 58.541 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
621 | 625 | 3.343617 | TCTTTTAGATTTGGGTCGGCAG | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
622 | 626 | 3.343617 | CTCTTTTAGATTTGGGTCGGCA | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
623 | 627 | 2.683362 | CCTCTTTTAGATTTGGGTCGGC | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
624 | 628 | 3.279434 | CCCTCTTTTAGATTTGGGTCGG | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
625 | 629 | 2.683362 | GCCCTCTTTTAGATTTGGGTCG | 59.317 | 50.000 | 0.00 | 0.00 | 31.68 | 4.79 |
626 | 630 | 2.683362 | CGCCCTCTTTTAGATTTGGGTC | 59.317 | 50.000 | 0.00 | 0.00 | 31.68 | 4.46 |
627 | 631 | 2.620627 | CCGCCCTCTTTTAGATTTGGGT | 60.621 | 50.000 | 0.00 | 0.00 | 31.68 | 4.51 |
628 | 632 | 2.024414 | CCGCCCTCTTTTAGATTTGGG | 58.976 | 52.381 | 0.00 | 0.00 | 32.08 | 4.12 |
629 | 633 | 1.405463 | GCCGCCCTCTTTTAGATTTGG | 59.595 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
630 | 634 | 1.405463 | GGCCGCCCTCTTTTAGATTTG | 59.595 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
631 | 635 | 1.763968 | GGCCGCCCTCTTTTAGATTT | 58.236 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
632 | 636 | 0.463833 | CGGCCGCCCTCTTTTAGATT | 60.464 | 55.000 | 14.67 | 0.00 | 0.00 | 2.40 |
633 | 637 | 1.146263 | CGGCCGCCCTCTTTTAGAT | 59.854 | 57.895 | 14.67 | 0.00 | 0.00 | 1.98 |
634 | 638 | 2.582436 | CGGCCGCCCTCTTTTAGA | 59.418 | 61.111 | 14.67 | 0.00 | 0.00 | 2.10 |
635 | 639 | 3.202706 | GCGGCCGCCCTCTTTTAG | 61.203 | 66.667 | 39.89 | 0.00 | 34.56 | 1.85 |
661 | 665 | 4.367023 | TCTTTGTCGGGTCGGCCG | 62.367 | 66.667 | 22.12 | 22.12 | 34.97 | 6.13 |
662 | 666 | 2.434359 | CTCTTTGTCGGGTCGGCC | 60.434 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
663 | 667 | 3.119096 | GCTCTTTGTCGGGTCGGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
664 | 668 | 2.809601 | CGCTCTTTGTCGGGTCGG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
665 | 669 | 2.809601 | CCGCTCTTTGTCGGGTCG | 60.810 | 66.667 | 0.00 | 0.00 | 41.82 | 4.79 |
666 | 670 | 1.737008 | GTCCGCTCTTTGTCGGGTC | 60.737 | 63.158 | 0.64 | 0.00 | 45.31 | 4.46 |
667 | 671 | 2.035237 | TTGTCCGCTCTTTGTCGGGT | 62.035 | 55.000 | 0.64 | 0.00 | 45.31 | 5.28 |
668 | 672 | 0.882927 | TTTGTCCGCTCTTTGTCGGG | 60.883 | 55.000 | 0.64 | 0.00 | 45.31 | 5.14 |
669 | 673 | 0.941542 | TTTTGTCCGCTCTTTGTCGG | 59.058 | 50.000 | 0.00 | 0.00 | 46.52 | 4.79 |
670 | 674 | 1.660333 | GCTTTTGTCCGCTCTTTGTCG | 60.660 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
671 | 675 | 1.660333 | CGCTTTTGTCCGCTCTTTGTC | 60.660 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
672 | 676 | 0.307760 | CGCTTTTGTCCGCTCTTTGT | 59.692 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
673 | 677 | 0.307760 | ACGCTTTTGTCCGCTCTTTG | 59.692 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
674 | 678 | 0.586802 | GACGCTTTTGTCCGCTCTTT | 59.413 | 50.000 | 0.00 | 0.00 | 32.61 | 2.52 |
675 | 679 | 1.557443 | CGACGCTTTTGTCCGCTCTT | 61.557 | 55.000 | 0.00 | 0.00 | 35.40 | 2.85 |
676 | 680 | 2.022129 | CGACGCTTTTGTCCGCTCT | 61.022 | 57.895 | 0.00 | 0.00 | 35.40 | 4.09 |
677 | 681 | 2.211761 | GACGACGCTTTTGTCCGCTC | 62.212 | 60.000 | 0.00 | 0.00 | 35.40 | 5.03 |
678 | 682 | 2.279918 | ACGACGCTTTTGTCCGCT | 60.280 | 55.556 | 0.00 | 0.00 | 35.40 | 5.52 |
679 | 683 | 2.170273 | GACGACGCTTTTGTCCGC | 59.830 | 61.111 | 0.00 | 0.00 | 35.40 | 5.54 |
707 | 711 | 4.660938 | AGCAACTCCAACGGGCCC | 62.661 | 66.667 | 13.57 | 13.57 | 0.00 | 5.80 |
708 | 712 | 3.056328 | GAGCAACTCCAACGGGCC | 61.056 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
709 | 713 | 3.423154 | CGAGCAACTCCAACGGGC | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
710 | 714 | 1.738099 | CTCGAGCAACTCCAACGGG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
711 | 715 | 1.738099 | CCTCGAGCAACTCCAACGG | 60.738 | 63.158 | 6.99 | 0.00 | 0.00 | 4.44 |
712 | 716 | 0.108615 | ATCCTCGAGCAACTCCAACG | 60.109 | 55.000 | 6.99 | 0.00 | 0.00 | 4.10 |
713 | 717 | 1.066858 | TCATCCTCGAGCAACTCCAAC | 60.067 | 52.381 | 6.99 | 0.00 | 0.00 | 3.77 |
714 | 718 | 1.066858 | GTCATCCTCGAGCAACTCCAA | 60.067 | 52.381 | 6.99 | 0.00 | 0.00 | 3.53 |
715 | 719 | 0.532573 | GTCATCCTCGAGCAACTCCA | 59.467 | 55.000 | 6.99 | 0.00 | 0.00 | 3.86 |
716 | 720 | 0.179097 | GGTCATCCTCGAGCAACTCC | 60.179 | 60.000 | 6.99 | 2.74 | 33.55 | 3.85 |
717 | 721 | 0.532573 | TGGTCATCCTCGAGCAACTC | 59.467 | 55.000 | 6.99 | 0.00 | 40.28 | 3.01 |
718 | 722 | 0.534412 | CTGGTCATCCTCGAGCAACT | 59.466 | 55.000 | 6.99 | 0.00 | 42.45 | 3.16 |
719 | 723 | 0.460987 | CCTGGTCATCCTCGAGCAAC | 60.461 | 60.000 | 6.99 | 1.62 | 42.45 | 4.17 |
720 | 724 | 0.614697 | TCCTGGTCATCCTCGAGCAA | 60.615 | 55.000 | 6.99 | 0.00 | 42.45 | 3.91 |
721 | 725 | 1.000359 | TCCTGGTCATCCTCGAGCA | 60.000 | 57.895 | 6.99 | 0.00 | 40.92 | 4.26 |
722 | 726 | 0.753479 | TCTCCTGGTCATCCTCGAGC | 60.753 | 60.000 | 6.99 | 0.00 | 33.02 | 5.03 |
723 | 727 | 1.317613 | CTCTCCTGGTCATCCTCGAG | 58.682 | 60.000 | 5.13 | 5.13 | 33.73 | 4.04 |
724 | 728 | 0.753479 | GCTCTCCTGGTCATCCTCGA | 60.753 | 60.000 | 0.00 | 0.00 | 34.23 | 4.04 |
725 | 729 | 1.739049 | GCTCTCCTGGTCATCCTCG | 59.261 | 63.158 | 0.00 | 0.00 | 34.23 | 4.63 |
744 | 748 | 3.058639 | CGCCACTCTCTTTCTTTCTTTGG | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
879 | 883 | 5.061560 | GTGACACGAATGATGAGAAGAACTC | 59.938 | 44.000 | 0.00 | 0.00 | 45.11 | 3.01 |
883 | 887 | 4.519540 | TGTGACACGAATGATGAGAAGA | 57.480 | 40.909 | 0.22 | 0.00 | 0.00 | 2.87 |
885 | 889 | 6.809869 | AGATATGTGACACGAATGATGAGAA | 58.190 | 36.000 | 0.22 | 0.00 | 0.00 | 2.87 |
906 | 910 | 4.223700 | TCTTGTGGCTGTGAGTTGATAGAT | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
912 | 916 | 2.417933 | GCTATCTTGTGGCTGTGAGTTG | 59.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
915 | 919 | 2.391616 | TGCTATCTTGTGGCTGTGAG | 57.608 | 50.000 | 0.00 | 0.00 | 34.98 | 3.51 |
923 | 927 | 2.535534 | CGTGATGCGTTGCTATCTTGTG | 60.536 | 50.000 | 0.00 | 0.00 | 35.54 | 3.33 |
970 | 2816 | 2.640184 | GGGAATTTCCAACGTCCCTAG | 58.360 | 52.381 | 17.08 | 0.00 | 45.50 | 3.02 |
976 | 2822 | 2.938838 | TGACTTGGGAATTTCCAACGT | 58.061 | 42.857 | 14.67 | 15.58 | 41.44 | 3.99 |
977 | 2823 | 4.048504 | GTTTGACTTGGGAATTTCCAACG | 58.951 | 43.478 | 14.67 | 12.68 | 41.44 | 4.10 |
978 | 2824 | 5.017294 | TGTTTGACTTGGGAATTTCCAAC | 57.983 | 39.130 | 14.67 | 6.64 | 41.44 | 3.77 |
979 | 2825 | 5.454471 | CCATGTTTGACTTGGGAATTTCCAA | 60.454 | 40.000 | 17.59 | 17.59 | 43.82 | 3.53 |
1040 | 2889 | 2.815647 | GCGGGCGAAGACTGGAAG | 60.816 | 66.667 | 0.00 | 0.00 | 46.50 | 3.46 |
1045 | 2894 | 2.100879 | AAACTCAGCGGGCGAAGACT | 62.101 | 55.000 | 0.00 | 0.00 | 32.70 | 3.24 |
1060 | 2909 | 2.232941 | TCACCCGCTCGAATAAGAAACT | 59.767 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1074 | 2923 | 0.383949 | TTTCTTGCTTTGTCACCCGC | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1111 | 2964 | 1.050988 | ATGTCTAGCAGTGGGGCGAT | 61.051 | 55.000 | 0.00 | 0.00 | 39.27 | 4.58 |
1437 | 3301 | 1.890894 | GTTGAGGCCAGCGAGTAGA | 59.109 | 57.895 | 5.01 | 0.00 | 0.00 | 2.59 |
1596 | 3478 | 0.528684 | CGATGAGAGGGCGGAAGTTC | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1695 | 3627 | 7.642071 | AATCAATTCGTTGTTGAGAAATTGG | 57.358 | 32.000 | 0.00 | 0.00 | 38.81 | 3.16 |
2291 | 8474 | 4.087892 | CCTGTCCCTGGTCGCCTG | 62.088 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
2674 | 8863 | 5.669477 | AGAAGCTAACTATTCTTGCCAGAG | 58.331 | 41.667 | 0.00 | 0.00 | 31.76 | 3.35 |
2715 | 8904 | 2.602257 | TTGCTCGATCATTGGTCGAT | 57.398 | 45.000 | 21.36 | 0.00 | 45.81 | 3.59 |
2719 | 8908 | 3.346315 | TCATGTTTGCTCGATCATTGGT | 58.654 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
2723 | 8912 | 2.804527 | CCGATCATGTTTGCTCGATCAT | 59.195 | 45.455 | 1.23 | 0.00 | 42.56 | 2.45 |
2737 | 8926 | 5.878116 | TCTAAAATTTTCGTGTCCCGATCAT | 59.122 | 36.000 | 6.72 | 0.00 | 46.75 | 2.45 |
2830 | 9045 | 5.089970 | TCGATACATCCATCCATCCAATC | 57.910 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
2868 | 9083 | 3.805422 | CACTACAACAGCTACGAAAACCA | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2870 | 9085 | 4.376109 | GCTCACTACAACAGCTACGAAAAC | 60.376 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
2874 | 9089 | 1.201647 | GGCTCACTACAACAGCTACGA | 59.798 | 52.381 | 0.00 | 0.00 | 33.38 | 3.43 |
2899 | 9245 | 1.608109 | GCCCCGGTTTTCGTTAAGAAA | 59.392 | 47.619 | 0.00 | 0.00 | 46.22 | 2.52 |
2946 | 9292 | 9.014297 | CACCTCTGGTTAAAACTGATCTTTATT | 57.986 | 33.333 | 0.00 | 0.00 | 31.02 | 1.40 |
2963 | 9309 | 3.788142 | ACAATCCCATTATCACCTCTGGT | 59.212 | 43.478 | 0.00 | 0.00 | 35.62 | 4.00 |
2964 | 9310 | 4.443978 | ACAATCCCATTATCACCTCTGG | 57.556 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
2965 | 9311 | 5.068198 | CCAAACAATCCCATTATCACCTCTG | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3028 | 9377 | 4.114015 | TCTTCTCCGAGCCCTTATATCA | 57.886 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
3029 | 9378 | 5.186021 | TCATTCTTCTCCGAGCCCTTATATC | 59.814 | 44.000 | 0.00 | 0.00 | 0.00 | 1.63 |
3031 | 9380 | 4.480115 | TCATTCTTCTCCGAGCCCTTATA | 58.520 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
3032 | 9381 | 3.309296 | TCATTCTTCTCCGAGCCCTTAT | 58.691 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
3033 | 9382 | 2.747177 | TCATTCTTCTCCGAGCCCTTA | 58.253 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3034 | 9383 | 1.573108 | TCATTCTTCTCCGAGCCCTT | 58.427 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3035 | 9384 | 1.573108 | TTCATTCTTCTCCGAGCCCT | 58.427 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3036 | 9385 | 2.093447 | TCTTTCATTCTTCTCCGAGCCC | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3037 | 9386 | 3.252974 | TCTTTCATTCTTCTCCGAGCC | 57.747 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
3039 | 9388 | 4.560819 | CGAGTTCTTTCATTCTTCTCCGAG | 59.439 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3040 | 9389 | 4.022242 | ACGAGTTCTTTCATTCTTCTCCGA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 4.55 |
3041 | 9390 | 4.090642 | CACGAGTTCTTTCATTCTTCTCCG | 59.909 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3042 | 9391 | 5.230942 | TCACGAGTTCTTTCATTCTTCTCC | 58.769 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
3061 | 9424 | 1.733389 | GCAGATTGGTTGGCATTCACG | 60.733 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
3089 | 9452 | 6.785191 | AGTTATCATGTAAATTTCTGCCGTG | 58.215 | 36.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3091 | 9454 | 8.184192 | AGAAAGTTATCATGTAAATTTCTGCCG | 58.816 | 33.333 | 25.30 | 0.00 | 44.70 | 5.69 |
3116 | 9479 | 1.303799 | GCCACATGTCTCACCAGCAG | 61.304 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3145 | 9508 | 0.867746 | TATCAATCTTCCGCGCATGC | 59.132 | 50.000 | 7.91 | 7.91 | 37.91 | 4.06 |
3195 | 9579 | 5.860716 | GCTTGCAATAACTCAAAGAGGAAAG | 59.139 | 40.000 | 0.00 | 0.00 | 33.35 | 2.62 |
3226 | 9610 | 5.630680 | CCATCGAGTGAAATTTTGTCCAAAG | 59.369 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3254 | 9638 | 4.145876 | TCGCAGTTTGTAGCAGAATTTG | 57.854 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
3260 | 9644 | 0.164647 | GTGCTCGCAGTTTGTAGCAG | 59.835 | 55.000 | 0.00 | 0.00 | 45.04 | 4.24 |
3328 | 9712 | 0.470268 | AGACGGGATCTCCTAAGCCC | 60.470 | 60.000 | 0.00 | 0.00 | 37.21 | 5.19 |
3354 | 9738 | 1.266989 | CCATCGCTATGACGTAGAGCA | 59.733 | 52.381 | 14.14 | 0.00 | 43.80 | 4.26 |
3360 | 9744 | 1.869754 | GCACATCCATCGCTATGACGT | 60.870 | 52.381 | 0.00 | 0.00 | 34.84 | 4.34 |
3361 | 9745 | 0.786581 | GCACATCCATCGCTATGACG | 59.213 | 55.000 | 0.00 | 0.00 | 34.84 | 4.35 |
3408 | 9792 | 2.246091 | AGAGGAAAGAGGACCCTCAG | 57.754 | 55.000 | 17.50 | 0.00 | 46.74 | 3.35 |
3443 | 9828 | 2.338577 | ATGGATAGCCTCTGTGTTGC | 57.661 | 50.000 | 0.00 | 0.00 | 34.31 | 4.17 |
3456 | 9841 | 4.265904 | ACATCATCGGCGTAAATGGATA | 57.734 | 40.909 | 6.85 | 0.00 | 0.00 | 2.59 |
3495 | 9880 | 2.373502 | TGAGAGATCGATAGCAGAGGGA | 59.626 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3501 | 9886 | 2.491298 | GAGGCATGAGAGATCGATAGCA | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3520 | 9905 | 1.662629 | GACAATGAGCACACATCCGAG | 59.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
3523 | 9908 | 3.366679 | CCAAAGACAATGAGCACACATCC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3553 | 9938 | 1.911357 | AGTCTCAATCATGTGGCCTGA | 59.089 | 47.619 | 3.32 | 0.00 | 0.00 | 3.86 |
3555 | 9940 | 1.911357 | TGAGTCTCAATCATGTGGCCT | 59.089 | 47.619 | 3.32 | 0.00 | 0.00 | 5.19 |
3557 | 9942 | 3.341823 | AGTTGAGTCTCAATCATGTGGC | 58.658 | 45.455 | 18.08 | 3.33 | 38.79 | 5.01 |
3558 | 9943 | 5.349817 | GTGTAGTTGAGTCTCAATCATGTGG | 59.650 | 44.000 | 18.08 | 0.00 | 38.79 | 4.17 |
3559 | 9944 | 5.928264 | TGTGTAGTTGAGTCTCAATCATGTG | 59.072 | 40.000 | 18.08 | 0.00 | 38.79 | 3.21 |
3560 | 9945 | 6.101650 | TGTGTAGTTGAGTCTCAATCATGT | 57.898 | 37.500 | 18.08 | 4.52 | 38.79 | 3.21 |
3561 | 9946 | 7.386025 | TCTTTGTGTAGTTGAGTCTCAATCATG | 59.614 | 37.037 | 18.08 | 9.73 | 38.79 | 3.07 |
3562 | 9947 | 7.386299 | GTCTTTGTGTAGTTGAGTCTCAATCAT | 59.614 | 37.037 | 18.08 | 10.11 | 38.79 | 2.45 |
3563 | 9948 | 6.701841 | GTCTTTGTGTAGTTGAGTCTCAATCA | 59.298 | 38.462 | 18.08 | 14.09 | 38.79 | 2.57 |
3572 | 9957 | 3.123621 | GCGGATGTCTTTGTGTAGTTGAG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3592 | 9977 | 9.114952 | TCTTGATATCCTCTTATGAGTATAGCG | 57.885 | 37.037 | 0.00 | 0.00 | 38.61 | 4.26 |
3611 | 9996 | 9.813826 | TCCAACTCTATCTATGTCATCTTGATA | 57.186 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
3624 | 10009 | 3.982516 | AGGCACTGTCCAACTCTATCTA | 58.017 | 45.455 | 0.00 | 0.00 | 37.18 | 1.98 |
3629 | 10014 | 1.717032 | TGTAGGCACTGTCCAACTCT | 58.283 | 50.000 | 0.00 | 0.00 | 41.52 | 3.24 |
3642 | 10027 | 3.429410 | GGCTCCAAATTGACATTGTAGGC | 60.429 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.