Multiple sequence alignment - TraesCS5D01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G324400 chr5D 100.000 4632 0 0 1 4632 416198526 416203157 0.000000e+00 8554.0
1 TraesCS5D01G324400 chr5D 86.928 918 105 10 997 1907 416172933 416173842 0.000000e+00 1016.0
2 TraesCS5D01G324400 chr5D 86.616 919 106 13 990 1901 415768186 415769094 0.000000e+00 1000.0
3 TraesCS5D01G324400 chr5D 87.200 875 104 6 1031 1901 468340494 468341364 0.000000e+00 989.0
4 TraesCS5D01G324400 chr5D 85.932 917 110 13 990 1901 415746204 415747106 0.000000e+00 961.0
5 TraesCS5D01G324400 chr5D 93.878 49 3 0 460 508 369875890 369875842 1.790000e-09 75.0
6 TraesCS5D01G324400 chr5B 94.745 2493 117 12 2145 4629 503085056 503087542 0.000000e+00 3866.0
7 TraesCS5D01G324400 chr5B 94.656 1179 52 9 611 1780 503082630 503083806 0.000000e+00 1818.0
8 TraesCS5D01G324400 chr5B 86.739 920 100 12 990 1901 502376240 502377145 0.000000e+00 1003.0
9 TraesCS5D01G324400 chr5B 86.057 918 116 8 997 1907 503077766 503078678 0.000000e+00 976.0
10 TraesCS5D01G324400 chr5B 85.466 922 108 15 990 1901 502264811 502265716 0.000000e+00 937.0
11 TraesCS5D01G324400 chr5B 94.355 372 15 2 1776 2145 503084591 503084958 2.420000e-157 566.0
12 TraesCS5D01G324400 chr5B 78.947 589 120 4 3029 3615 502265818 502266404 9.340000e-107 398.0
13 TraesCS5D01G324400 chr5A 92.849 2657 135 26 718 3356 528910020 528912639 0.000000e+00 3803.0
14 TraesCS5D01G324400 chr5A 92.236 1288 85 11 3352 4629 528930028 528931310 0.000000e+00 1810.0
15 TraesCS5D01G324400 chr5A 84.112 107 12 4 2158 2260 317104018 317104123 1.060000e-16 99.0
16 TraesCS5D01G324400 chr5A 95.082 61 3 0 448 508 472348083 472348023 3.810000e-16 97.1
17 TraesCS5D01G324400 chr5A 84.158 101 12 1 2167 2263 331393825 331393725 1.370000e-15 95.3
18 TraesCS5D01G324400 chr7D 92.308 169 13 0 954 1122 160563389 160563557 1.670000e-59 241.0
19 TraesCS5D01G324400 chr7D 90.805 87 4 4 445 528 440561144 440561229 3.790000e-21 113.0
20 TraesCS5D01G324400 chr7D 83.784 111 14 2 2159 2265 448869339 448869229 8.200000e-18 102.0
21 TraesCS5D01G324400 chr7D 82.727 110 13 5 2160 2265 464028017 464027910 4.930000e-15 93.5
22 TraesCS5D01G324400 chr2B 86.957 115 9 4 2156 2265 522202035 522202148 1.750000e-24 124.0
23 TraesCS5D01G324400 chr2B 89.796 98 4 4 2173 2265 776813401 776813497 2.260000e-23 121.0
24 TraesCS5D01G324400 chr2D 86.087 115 10 4 2156 2265 443243879 443243992 8.140000e-23 119.0
25 TraesCS5D01G324400 chr7B 91.566 83 4 3 448 528 458341036 458341117 1.360000e-20 111.0
26 TraesCS5D01G324400 chr7B 79.798 99 19 1 245 342 371726337 371726239 2.310000e-08 71.3
27 TraesCS5D01G324400 chr7B 100.000 28 0 0 132 159 313767221 313767194 8.000000e-03 52.8
28 TraesCS5D01G324400 chr7A 89.655 87 5 4 445 528 492239000 492239085 1.760000e-19 108.0
29 TraesCS5D01G324400 chr6B 82.906 117 16 4 106 219 471673043 471672928 8.200000e-18 102.0
30 TraesCS5D01G324400 chr4D 89.474 76 6 2 445 518 439697839 439697764 1.370000e-15 95.3
31 TraesCS5D01G324400 chr6D 85.542 83 9 3 445 525 418463592 418463511 2.970000e-12 84.2
32 TraesCS5D01G324400 chr6A 94.118 51 2 1 445 494 560817427 560817377 4.970000e-10 76.8
33 TraesCS5D01G324400 chr1D 96.970 33 1 0 299 331 454508344 454508376 6.470000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G324400 chr5D 416198526 416203157 4631 False 8554.0 8554 100.00000 1 4632 1 chr5D.!!$F4 4631
1 TraesCS5D01G324400 chr5D 416172933 416173842 909 False 1016.0 1016 86.92800 997 1907 1 chr5D.!!$F3 910
2 TraesCS5D01G324400 chr5D 415768186 415769094 908 False 1000.0 1000 86.61600 990 1901 1 chr5D.!!$F2 911
3 TraesCS5D01G324400 chr5D 468340494 468341364 870 False 989.0 989 87.20000 1031 1901 1 chr5D.!!$F5 870
4 TraesCS5D01G324400 chr5D 415746204 415747106 902 False 961.0 961 85.93200 990 1901 1 chr5D.!!$F1 911
5 TraesCS5D01G324400 chr5B 503077766 503087542 9776 False 1806.5 3866 92.45325 611 4629 4 chr5B.!!$F3 4018
6 TraesCS5D01G324400 chr5B 502376240 502377145 905 False 1003.0 1003 86.73900 990 1901 1 chr5B.!!$F1 911
7 TraesCS5D01G324400 chr5B 502264811 502266404 1593 False 667.5 937 82.20650 990 3615 2 chr5B.!!$F2 2625
8 TraesCS5D01G324400 chr5A 528910020 528912639 2619 False 3803.0 3803 92.84900 718 3356 1 chr5A.!!$F2 2638
9 TraesCS5D01G324400 chr5A 528930028 528931310 1282 False 1810.0 1810 92.23600 3352 4629 1 chr5A.!!$F3 1277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.123266 TGGAGGGGAAGGGGAGAAAT 59.877 55.000 0.0 0.0 0.00 2.17 F
523 524 0.162294 CGTTTGCCGTTAACCGAGTC 59.838 55.000 0.0 0.0 39.56 3.36 F
646 4902 0.180171 AAACCATCATGATCCGGCGA 59.820 50.000 9.3 0.0 0.00 5.54 F
1064 5333 0.320421 GCCTTCTGCTACGTGACCAA 60.320 55.000 0.0 0.0 36.87 3.67 F
1912 6976 1.079405 GTGATCGACCGAAAGCCCA 60.079 57.895 0.0 0.0 0.00 5.36 F
2671 7847 1.140052 TCCACAAGCTCCGAAACAAGA 59.860 47.619 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 6996 1.069204 CATAGACAGACCATGGACCCG 59.931 57.143 21.47 9.25 0.00 5.28 R
2316 7485 0.690762 ACGGCTGTCTGTTACCCAAT 59.309 50.000 0.00 0.00 0.00 3.16 R
2620 7795 3.738830 ACGGACTGTTACTTGCTACAA 57.261 42.857 0.00 0.00 0.00 2.41 R
3000 8176 0.693049 CAGGTCCTACATATGCCCCC 59.307 60.000 1.58 0.00 0.00 5.40 R
3259 8435 0.395311 TCTCGTAGCCCTGGACGATT 60.395 55.000 9.21 0.00 46.17 3.34 R
3685 8862 0.528466 TCACCGATGAGATGCTTCGC 60.528 55.000 0.00 0.00 41.34 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.800681 GCCTTTTCCGGTTCGATGG 59.199 57.895 0.00 0.00 0.00 3.51
20 21 1.029947 CCTTTTCCGGTTCGATGGGG 61.030 60.000 0.00 0.00 0.00 4.96
21 22 0.322187 CTTTTCCGGTTCGATGGGGT 60.322 55.000 0.00 0.00 0.00 4.95
30 31 3.487202 CGATGGGGTCGCAACACG 61.487 66.667 0.00 0.00 44.33 4.49
31 32 3.799755 GATGGGGTCGCAACACGC 61.800 66.667 0.00 0.00 43.23 5.34
50 51 3.764466 CGCTGGCGGGAAGAGTCT 61.764 66.667 7.12 0.00 35.56 3.24
51 52 2.125350 GCTGGCGGGAAGAGTCTG 60.125 66.667 0.00 0.00 0.00 3.51
53 54 3.672295 CTGGCGGGAAGAGTCTGGC 62.672 68.421 0.00 0.00 0.00 4.85
54 55 3.394836 GGCGGGAAGAGTCTGGCT 61.395 66.667 0.00 0.00 0.00 4.75
55 56 2.185608 GCGGGAAGAGTCTGGCTC 59.814 66.667 0.00 0.00 44.45 4.70
62 63 2.508887 GAGTCTGGCTCTGCTGCG 60.509 66.667 1.15 0.00 40.98 5.18
63 64 4.079850 AGTCTGGCTCTGCTGCGG 62.080 66.667 0.95 0.95 0.00 5.69
80 81 4.789075 GCCGCCACATGCTGCTTG 62.789 66.667 13.31 13.31 45.67 4.01
81 82 3.367743 CCGCCACATGCTGCTTGT 61.368 61.111 14.61 14.61 38.05 3.16
83 84 2.431942 GCCACATGCTGCTTGTGC 60.432 61.111 31.69 24.92 42.47 4.57
85 86 2.126618 CACATGCTGCTTGTGCCG 60.127 61.111 28.18 11.59 38.18 5.69
87 88 4.124351 CATGCTGCTTGTGCCGGG 62.124 66.667 2.18 0.00 38.71 5.73
108 109 4.824515 CCTCCGCCTCCGACTCCT 62.825 72.222 0.00 0.00 36.29 3.69
109 110 3.522731 CTCCGCCTCCGACTCCTG 61.523 72.222 0.00 0.00 36.29 3.86
112 113 3.842923 CGCCTCCGACTCCTGCAT 61.843 66.667 0.00 0.00 36.29 3.96
113 114 2.202987 GCCTCCGACTCCTGCATG 60.203 66.667 0.00 0.00 0.00 4.06
114 115 2.202987 CCTCCGACTCCTGCATGC 60.203 66.667 11.82 11.82 0.00 4.06
115 116 2.584418 CTCCGACTCCTGCATGCG 60.584 66.667 14.09 7.87 0.00 4.73
116 117 4.819761 TCCGACTCCTGCATGCGC 62.820 66.667 14.09 0.00 39.24 6.09
130 131 4.819761 GCGCATCTGCACGGGAGA 62.820 66.667 0.30 0.00 42.21 3.71
131 132 2.887568 CGCATCTGCACGGGAGAC 60.888 66.667 2.72 0.00 42.21 3.36
182 183 4.344865 GTTGGCGCTGGAGGGGAA 62.345 66.667 7.64 0.00 0.00 3.97
188 189 3.093172 GCTGGAGGGGAAGGGGAG 61.093 72.222 0.00 0.00 0.00 4.30
189 190 2.787866 CTGGAGGGGAAGGGGAGA 59.212 66.667 0.00 0.00 0.00 3.71
215 216 2.528041 TCTAGATCTAGAGCGACGCA 57.472 50.000 25.54 4.09 37.28 5.24
217 218 2.036089 TCTAGATCTAGAGCGACGCAGA 59.964 50.000 25.54 16.40 37.28 4.26
218 219 1.225855 AGATCTAGAGCGACGCAGAG 58.774 55.000 23.70 15.20 0.00 3.35
219 220 0.385473 GATCTAGAGCGACGCAGAGC 60.385 60.000 23.70 15.00 35.35 4.09
220 221 0.817634 ATCTAGAGCGACGCAGAGCT 60.818 55.000 23.70 15.06 45.51 4.09
221 222 1.298264 CTAGAGCGACGCAGAGCTG 60.298 63.158 23.70 2.96 43.45 4.24
223 224 4.121669 GAGCGACGCAGAGCTGGA 62.122 66.667 23.70 0.00 43.45 3.86
224 225 4.427661 AGCGACGCAGAGCTGGAC 62.428 66.667 23.70 0.00 42.17 4.02
226 227 4.103103 CGACGCAGAGCTGGACGA 62.103 66.667 0.00 0.00 0.00 4.20
227 228 2.202544 GACGCAGAGCTGGACGAG 60.203 66.667 0.00 0.00 0.00 4.18
241 242 4.521062 CGAGCGCTGGAGGGGAAG 62.521 72.222 18.48 0.00 0.00 3.46
242 243 4.168291 GAGCGCTGGAGGGGAAGG 62.168 72.222 18.48 0.00 0.00 3.46
247 248 2.787866 CTGGAGGGGAAGGGGAGA 59.212 66.667 0.00 0.00 0.00 3.71
248 249 1.082954 CTGGAGGGGAAGGGGAGAA 59.917 63.158 0.00 0.00 0.00 2.87
249 250 0.550147 CTGGAGGGGAAGGGGAGAAA 60.550 60.000 0.00 0.00 0.00 2.52
250 251 0.123266 TGGAGGGGAAGGGGAGAAAT 59.877 55.000 0.00 0.00 0.00 2.17
251 252 0.553333 GGAGGGGAAGGGGAGAAATG 59.447 60.000 0.00 0.00 0.00 2.32
252 253 1.596496 GAGGGGAAGGGGAGAAATGA 58.404 55.000 0.00 0.00 0.00 2.57
253 254 1.923148 GAGGGGAAGGGGAGAAATGAA 59.077 52.381 0.00 0.00 0.00 2.57
255 256 1.641192 GGGGAAGGGGAGAAATGAACT 59.359 52.381 0.00 0.00 0.00 3.01
256 257 2.043115 GGGGAAGGGGAGAAATGAACTT 59.957 50.000 0.00 0.00 0.00 2.66
257 258 3.502303 GGGGAAGGGGAGAAATGAACTTT 60.502 47.826 0.00 0.00 0.00 2.66
259 260 4.407365 GGAAGGGGAGAAATGAACTTTGA 58.593 43.478 0.00 0.00 0.00 2.69
261 262 4.731313 AGGGGAGAAATGAACTTTGACT 57.269 40.909 0.00 0.00 0.00 3.41
262 263 5.066913 AGGGGAGAAATGAACTTTGACTT 57.933 39.130 0.00 0.00 0.00 3.01
263 264 5.458595 AGGGGAGAAATGAACTTTGACTTT 58.541 37.500 0.00 0.00 0.00 2.66
264 265 5.536538 AGGGGAGAAATGAACTTTGACTTTC 59.463 40.000 0.00 0.00 0.00 2.62
265 266 5.301805 GGGGAGAAATGAACTTTGACTTTCA 59.698 40.000 0.00 0.00 36.21 2.69
266 267 6.183360 GGGGAGAAATGAACTTTGACTTTCAA 60.183 38.462 0.00 0.00 35.42 2.69
267 268 7.264947 GGGAGAAATGAACTTTGACTTTCAAA 58.735 34.615 1.60 1.60 43.37 2.69
268 269 7.763985 GGGAGAAATGAACTTTGACTTTCAAAA 59.236 33.333 3.13 0.00 44.69 2.44
270 271 8.173321 AGAAATGAACTTTGACTTTCAAAACG 57.827 30.769 3.13 0.00 44.69 3.60
273 274 5.395642 TGAACTTTGACTTTCAAAACGACC 58.604 37.500 3.13 0.00 44.69 4.79
274 275 5.182380 TGAACTTTGACTTTCAAAACGACCT 59.818 36.000 3.13 0.00 44.69 3.85
275 276 5.638596 ACTTTGACTTTCAAAACGACCTT 57.361 34.783 3.13 0.00 44.69 3.50
276 277 6.746745 ACTTTGACTTTCAAAACGACCTTA 57.253 33.333 3.13 0.00 44.69 2.69
277 278 7.148355 ACTTTGACTTTCAAAACGACCTTAA 57.852 32.000 3.13 0.00 44.69 1.85
279 280 7.913821 ACTTTGACTTTCAAAACGACCTTAATC 59.086 33.333 3.13 0.00 44.69 1.75
280 281 6.928979 TGACTTTCAAAACGACCTTAATCA 57.071 33.333 0.00 0.00 0.00 2.57
281 282 7.504924 TGACTTTCAAAACGACCTTAATCAT 57.495 32.000 0.00 0.00 0.00 2.45
282 283 7.936584 TGACTTTCAAAACGACCTTAATCATT 58.063 30.769 0.00 0.00 0.00 2.57
283 284 8.410141 TGACTTTCAAAACGACCTTAATCATTT 58.590 29.630 0.00 0.00 0.00 2.32
284 285 8.574196 ACTTTCAAAACGACCTTAATCATTTG 57.426 30.769 0.00 0.00 0.00 2.32
285 286 8.194769 ACTTTCAAAACGACCTTAATCATTTGT 58.805 29.630 0.00 0.00 31.68 2.83
286 287 8.934507 TTTCAAAACGACCTTAATCATTTGTT 57.065 26.923 0.00 0.00 31.68 2.83
287 288 7.922505 TCAAAACGACCTTAATCATTTGTTG 57.077 32.000 0.00 0.00 31.68 3.33
288 289 7.708051 TCAAAACGACCTTAATCATTTGTTGA 58.292 30.769 0.00 0.00 39.12 3.18
330 331 0.599204 CGTAGCAACACACGGGAGTT 60.599 55.000 0.00 0.00 44.67 3.01
331 332 1.145803 GTAGCAACACACGGGAGTTC 58.854 55.000 0.00 0.00 44.67 3.01
332 333 1.045407 TAGCAACACACGGGAGTTCT 58.955 50.000 0.00 1.74 44.67 3.01
333 334 1.045407 AGCAACACACGGGAGTTCTA 58.955 50.000 0.00 0.00 44.67 2.10
334 335 1.145803 GCAACACACGGGAGTTCTAC 58.854 55.000 0.00 0.00 44.67 2.59
335 336 1.792006 CAACACACGGGAGTTCTACC 58.208 55.000 0.00 0.00 44.67 3.18
336 337 1.069513 CAACACACGGGAGTTCTACCA 59.930 52.381 0.00 0.00 44.67 3.25
337 338 0.966920 ACACACGGGAGTTCTACCAG 59.033 55.000 0.00 0.00 44.67 4.00
339 340 1.343465 CACACGGGAGTTCTACCAGTT 59.657 52.381 0.00 0.00 44.67 3.16
341 342 3.194968 CACACGGGAGTTCTACCAGTTAT 59.805 47.826 0.00 0.00 44.67 1.89
344 345 3.836562 ACGGGAGTTCTACCAGTTATGTT 59.163 43.478 1.79 0.00 43.33 2.71
345 346 4.285260 ACGGGAGTTCTACCAGTTATGTTT 59.715 41.667 1.79 0.00 43.33 2.83
346 347 5.481473 ACGGGAGTTCTACCAGTTATGTTTA 59.519 40.000 1.79 0.00 43.33 2.01
347 348 6.014327 ACGGGAGTTCTACCAGTTATGTTTAA 60.014 38.462 1.79 0.00 43.33 1.52
348 349 6.875195 CGGGAGTTCTACCAGTTATGTTTAAA 59.125 38.462 1.79 0.00 0.00 1.52
349 350 7.388500 CGGGAGTTCTACCAGTTATGTTTAAAA 59.612 37.037 1.79 0.00 0.00 1.52
352 353 8.919777 AGTTCTACCAGTTATGTTTAAAAGCT 57.080 30.769 0.00 0.00 0.00 3.74
353 354 9.000486 AGTTCTACCAGTTATGTTTAAAAGCTC 58.000 33.333 0.00 0.00 0.00 4.09
356 357 6.481954 ACCAGTTATGTTTAAAAGCTCGAG 57.518 37.500 8.45 8.45 0.00 4.04
357 358 5.995897 ACCAGTTATGTTTAAAAGCTCGAGT 59.004 36.000 15.13 0.00 0.00 4.18
358 359 6.147328 ACCAGTTATGTTTAAAAGCTCGAGTC 59.853 38.462 15.13 6.52 0.00 3.36
359 360 6.147164 CCAGTTATGTTTAAAAGCTCGAGTCA 59.853 38.462 15.13 1.91 0.00 3.41
361 362 8.067784 CAGTTATGTTTAAAAGCTCGAGTCAAA 58.932 33.333 15.13 4.84 0.00 2.69
362 363 8.617809 AGTTATGTTTAAAAGCTCGAGTCAAAA 58.382 29.630 15.13 5.52 0.00 2.44
363 364 9.228636 GTTATGTTTAAAAGCTCGAGTCAAAAA 57.771 29.630 15.13 6.20 0.00 1.94
365 366 7.678194 TGTTTAAAAGCTCGAGTCAAAAATG 57.322 32.000 15.13 0.00 0.00 2.32
367 368 3.988379 AAAGCTCGAGTCAAAAATGCA 57.012 38.095 15.13 0.00 0.00 3.96
368 369 4.510038 AAAGCTCGAGTCAAAAATGCAT 57.490 36.364 15.13 0.00 0.00 3.96
369 370 4.510038 AAGCTCGAGTCAAAAATGCATT 57.490 36.364 15.13 5.99 0.00 3.56
370 371 5.627499 AAGCTCGAGTCAAAAATGCATTA 57.373 34.783 13.39 0.00 0.00 1.90
371 372 5.824904 AGCTCGAGTCAAAAATGCATTAT 57.175 34.783 13.39 1.77 0.00 1.28
372 373 5.814783 AGCTCGAGTCAAAAATGCATTATC 58.185 37.500 13.39 3.86 0.00 1.75
373 374 4.972440 GCTCGAGTCAAAAATGCATTATCC 59.028 41.667 13.39 0.00 0.00 2.59
374 375 5.220931 GCTCGAGTCAAAAATGCATTATCCT 60.221 40.000 13.39 4.65 0.00 3.24
375 376 6.017934 GCTCGAGTCAAAAATGCATTATCCTA 60.018 38.462 13.39 0.00 0.00 2.94
376 377 7.308229 GCTCGAGTCAAAAATGCATTATCCTAT 60.308 37.037 13.39 0.00 0.00 2.57
378 379 7.498900 TCGAGTCAAAAATGCATTATCCTATGT 59.501 33.333 13.39 0.00 0.00 2.29
379 380 8.773645 CGAGTCAAAAATGCATTATCCTATGTA 58.226 33.333 13.39 0.00 0.00 2.29
397 398 5.852282 ATGTAATAGAACAACAATGGGCC 57.148 39.130 0.00 0.00 32.02 5.80
399 400 5.268387 TGTAATAGAACAACAATGGGCCAT 58.732 37.500 14.78 14.78 0.00 4.40
400 401 5.719085 TGTAATAGAACAACAATGGGCCATT 59.281 36.000 25.94 25.94 34.04 3.16
403 404 3.099141 AGAACAACAATGGGCCATTAGG 58.901 45.455 30.26 22.82 32.35 2.69
404 405 2.917713 ACAACAATGGGCCATTAGGA 57.082 45.000 30.26 0.00 36.89 2.94
405 406 3.182887 ACAACAATGGGCCATTAGGAA 57.817 42.857 30.26 0.00 36.89 3.36
406 407 3.515562 ACAACAATGGGCCATTAGGAAA 58.484 40.909 30.26 0.00 36.89 3.13
407 408 3.515104 ACAACAATGGGCCATTAGGAAAG 59.485 43.478 30.26 19.10 36.89 2.62
408 409 3.473113 ACAATGGGCCATTAGGAAAGT 57.527 42.857 30.26 19.74 36.89 2.66
409 410 4.601406 ACAATGGGCCATTAGGAAAGTA 57.399 40.909 30.26 0.00 36.89 2.24
410 411 4.941713 ACAATGGGCCATTAGGAAAGTAA 58.058 39.130 30.26 0.00 36.89 2.24
411 412 5.337788 ACAATGGGCCATTAGGAAAGTAAA 58.662 37.500 30.26 0.00 36.89 2.01
413 414 5.932619 ATGGGCCATTAGGAAAGTAAAAC 57.067 39.130 14.78 0.00 36.89 2.43
414 415 5.005628 TGGGCCATTAGGAAAGTAAAACT 57.994 39.130 0.00 0.00 36.89 2.66
416 417 4.401519 GGGCCATTAGGAAAGTAAAACTCC 59.598 45.833 4.39 0.00 36.89 3.85
417 418 5.262009 GGCCATTAGGAAAGTAAAACTCCT 58.738 41.667 0.00 0.00 42.37 3.69
420 421 7.336396 GCCATTAGGAAAGTAAAACTCCTCTA 58.664 38.462 0.00 0.00 40.20 2.43
421 422 7.496263 GCCATTAGGAAAGTAAAACTCCTCTAG 59.504 40.741 0.00 0.00 40.20 2.43
422 423 8.759782 CCATTAGGAAAGTAAAACTCCTCTAGA 58.240 37.037 0.00 0.00 40.20 2.43
425 426 7.859026 AGGAAAGTAAAACTCCTCTAGACTT 57.141 36.000 0.00 0.00 34.31 3.01
426 427 8.265108 AGGAAAGTAAAACTCCTCTAGACTTT 57.735 34.615 0.00 0.00 34.31 2.66
427 428 8.715842 AGGAAAGTAAAACTCCTCTAGACTTTT 58.284 33.333 0.00 0.00 34.31 2.27
428 429 9.339850 GGAAAGTAAAACTCCTCTAGACTTTTT 57.660 33.333 0.00 0.00 36.17 1.94
451 452 4.338795 TCACCTCTCTTACTCCATTCCT 57.661 45.455 0.00 0.00 0.00 3.36
453 454 4.026744 CACCTCTCTTACTCCATTCCTCA 58.973 47.826 0.00 0.00 0.00 3.86
454 455 4.027437 ACCTCTCTTACTCCATTCCTCAC 58.973 47.826 0.00 0.00 0.00 3.51
455 456 4.026744 CCTCTCTTACTCCATTCCTCACA 58.973 47.826 0.00 0.00 0.00 3.58
456 457 4.467795 CCTCTCTTACTCCATTCCTCACAA 59.532 45.833 0.00 0.00 0.00 3.33
458 459 5.087323 TCTCTTACTCCATTCCTCACAACT 58.913 41.667 0.00 0.00 0.00 3.16
459 460 6.253758 TCTCTTACTCCATTCCTCACAACTA 58.746 40.000 0.00 0.00 0.00 2.24
460 461 6.724441 TCTCTTACTCCATTCCTCACAACTAA 59.276 38.462 0.00 0.00 0.00 2.24
461 462 7.234782 TCTCTTACTCCATTCCTCACAACTAAA 59.765 37.037 0.00 0.00 0.00 1.85
462 463 7.741785 TCTTACTCCATTCCTCACAACTAAAA 58.258 34.615 0.00 0.00 0.00 1.52
463 464 7.660208 TCTTACTCCATTCCTCACAACTAAAAC 59.340 37.037 0.00 0.00 0.00 2.43
464 465 5.941788 ACTCCATTCCTCACAACTAAAACT 58.058 37.500 0.00 0.00 0.00 2.66
465 466 5.765182 ACTCCATTCCTCACAACTAAAACTG 59.235 40.000 0.00 0.00 0.00 3.16
466 467 4.518970 TCCATTCCTCACAACTAAAACTGC 59.481 41.667 0.00 0.00 0.00 4.40
467 468 4.321230 CCATTCCTCACAACTAAAACTGCC 60.321 45.833 0.00 0.00 0.00 4.85
468 469 3.569194 TCCTCACAACTAAAACTGCCA 57.431 42.857 0.00 0.00 0.00 4.92
469 470 3.211045 TCCTCACAACTAAAACTGCCAC 58.789 45.455 0.00 0.00 0.00 5.01
470 471 2.032030 CCTCACAACTAAAACTGCCACG 60.032 50.000 0.00 0.00 0.00 4.94
471 472 2.869801 CTCACAACTAAAACTGCCACGA 59.130 45.455 0.00 0.00 0.00 4.35
472 473 3.271729 TCACAACTAAAACTGCCACGAA 58.728 40.909 0.00 0.00 0.00 3.85
473 474 3.690139 TCACAACTAAAACTGCCACGAAA 59.310 39.130 0.00 0.00 0.00 3.46
474 475 4.336993 TCACAACTAAAACTGCCACGAAAT 59.663 37.500 0.00 0.00 0.00 2.17
475 476 4.675114 CACAACTAAAACTGCCACGAAATC 59.325 41.667 0.00 0.00 0.00 2.17
476 477 3.806316 ACTAAAACTGCCACGAAATCG 57.194 42.857 0.48 0.48 46.33 3.34
490 491 2.639751 GAAATCGTTCGCATATGCCAC 58.360 47.619 21.77 16.68 37.91 5.01
493 494 1.523711 CGTTCGCATATGCCACCCT 60.524 57.895 21.77 0.00 37.91 4.34
494 495 1.498865 CGTTCGCATATGCCACCCTC 61.499 60.000 21.77 6.10 37.91 4.30
496 497 1.344953 TTCGCATATGCCACCCTCCT 61.345 55.000 21.77 0.00 37.91 3.69
497 498 1.149174 CGCATATGCCACCCTCCTT 59.851 57.895 21.77 0.00 37.91 3.36
498 499 1.168407 CGCATATGCCACCCTCCTTG 61.168 60.000 21.77 0.00 37.91 3.61
504 505 2.359975 CCACCCTCCTTGGCGAAC 60.360 66.667 0.00 0.00 0.00 3.95
506 507 3.239253 ACCCTCCTTGGCGAACGT 61.239 61.111 0.00 0.00 0.00 3.99
507 508 2.032071 CCCTCCTTGGCGAACGTT 59.968 61.111 0.00 0.00 0.00 3.99
508 509 1.599797 CCCTCCTTGGCGAACGTTT 60.600 57.895 0.46 0.00 0.00 3.60
509 510 1.574428 CCTCCTTGGCGAACGTTTG 59.426 57.895 11.39 11.39 0.00 2.93
510 511 1.082104 CTCCTTGGCGAACGTTTGC 60.082 57.895 28.87 28.87 36.84 3.68
522 523 2.228115 CGTTTGCCGTTAACCGAGT 58.772 52.632 0.00 0.00 39.56 4.18
523 524 0.162294 CGTTTGCCGTTAACCGAGTC 59.838 55.000 0.00 0.00 39.56 3.36
524 525 0.514255 GTTTGCCGTTAACCGAGTCC 59.486 55.000 0.00 0.00 39.56 3.85
525 526 0.393820 TTTGCCGTTAACCGAGTCCT 59.606 50.000 0.00 0.00 39.56 3.85
526 527 1.255882 TTGCCGTTAACCGAGTCCTA 58.744 50.000 0.00 0.00 39.56 2.94
530 531 2.035576 GCCGTTAACCGAGTCCTATGAT 59.964 50.000 0.00 0.00 39.56 2.45
531 532 3.254166 GCCGTTAACCGAGTCCTATGATA 59.746 47.826 0.00 0.00 39.56 2.15
532 533 4.261741 GCCGTTAACCGAGTCCTATGATAA 60.262 45.833 0.00 0.00 39.56 1.75
533 534 5.566230 GCCGTTAACCGAGTCCTATGATAAT 60.566 44.000 0.00 0.00 39.56 1.28
534 535 6.091437 CCGTTAACCGAGTCCTATGATAATC 58.909 44.000 0.00 0.00 39.56 1.75
535 536 5.793952 CGTTAACCGAGTCCTATGATAATCG 59.206 44.000 0.00 0.00 39.56 3.34
538 539 5.786264 ACCGAGTCCTATGATAATCGTTT 57.214 39.130 0.00 0.00 0.00 3.60
539 540 6.889301 ACCGAGTCCTATGATAATCGTTTA 57.111 37.500 0.00 0.00 0.00 2.01
540 541 7.281040 ACCGAGTCCTATGATAATCGTTTAA 57.719 36.000 0.00 0.00 0.00 1.52
541 542 7.719483 ACCGAGTCCTATGATAATCGTTTAAA 58.281 34.615 0.00 0.00 0.00 1.52
543 544 9.204570 CCGAGTCCTATGATAATCGTTTAAAAT 57.795 33.333 0.00 0.00 0.00 1.82
570 571 6.189036 GGGACCCTAAATTAAGCTATCAGT 57.811 41.667 2.09 0.00 0.00 3.41
571 572 6.231951 GGGACCCTAAATTAAGCTATCAGTC 58.768 44.000 2.09 0.00 0.00 3.51
572 573 6.183361 GGGACCCTAAATTAAGCTATCAGTCA 60.183 42.308 2.09 0.00 0.00 3.41
573 574 7.454225 GGACCCTAAATTAAGCTATCAGTCAT 58.546 38.462 0.00 0.00 0.00 3.06
574 575 7.604545 GGACCCTAAATTAAGCTATCAGTCATC 59.395 40.741 0.00 0.00 0.00 2.92
575 576 7.155328 ACCCTAAATTAAGCTATCAGTCATCG 58.845 38.462 0.00 0.00 0.00 3.84
576 577 6.591834 CCCTAAATTAAGCTATCAGTCATCGG 59.408 42.308 0.00 0.00 0.00 4.18
577 578 7.378966 CCTAAATTAAGCTATCAGTCATCGGA 58.621 38.462 0.00 0.00 0.00 4.55
578 579 8.037758 CCTAAATTAAGCTATCAGTCATCGGAT 58.962 37.037 0.00 0.00 33.48 4.18
579 580 9.429359 CTAAATTAAGCTATCAGTCATCGGATT 57.571 33.333 0.00 0.00 31.55 3.01
580 581 8.682936 AAATTAAGCTATCAGTCATCGGATTT 57.317 30.769 0.00 0.00 31.55 2.17
581 582 9.778741 AAATTAAGCTATCAGTCATCGGATTTA 57.221 29.630 0.00 0.00 31.55 1.40
583 584 5.140747 AGCTATCAGTCATCGGATTTACC 57.859 43.478 0.00 0.00 31.55 2.85
585 586 4.262463 GCTATCAGTCATCGGATTTACCCA 60.262 45.833 0.00 0.00 34.64 4.51
586 587 4.771114 ATCAGTCATCGGATTTACCCAA 57.229 40.909 0.00 0.00 34.64 4.12
587 588 4.561500 TCAGTCATCGGATTTACCCAAA 57.438 40.909 0.00 0.00 34.64 3.28
588 589 5.110814 TCAGTCATCGGATTTACCCAAAT 57.889 39.130 0.00 0.00 37.06 2.32
589 590 5.505780 TCAGTCATCGGATTTACCCAAATT 58.494 37.500 0.00 0.00 34.44 1.82
590 591 5.949354 TCAGTCATCGGATTTACCCAAATTT 59.051 36.000 0.00 0.00 34.44 1.82
591 592 6.094881 TCAGTCATCGGATTTACCCAAATTTC 59.905 38.462 0.00 0.00 34.44 2.17
592 593 6.095440 CAGTCATCGGATTTACCCAAATTTCT 59.905 38.462 0.00 0.00 34.44 2.52
593 594 6.663523 AGTCATCGGATTTACCCAAATTTCTT 59.336 34.615 0.00 0.00 34.44 2.52
594 595 6.751888 GTCATCGGATTTACCCAAATTTCTTG 59.248 38.462 0.00 0.00 34.44 3.02
595 596 5.066968 TCGGATTTACCCAAATTTCTTGC 57.933 39.130 0.00 0.00 34.44 4.01
597 598 4.081697 CGGATTTACCCAAATTTCTTGCCT 60.082 41.667 0.00 0.00 34.44 4.75
598 599 5.419542 GGATTTACCCAAATTTCTTGCCTC 58.580 41.667 0.00 0.00 34.44 4.70
599 600 5.046663 GGATTTACCCAAATTTCTTGCCTCA 60.047 40.000 0.00 0.00 34.44 3.86
600 601 6.352137 GGATTTACCCAAATTTCTTGCCTCAT 60.352 38.462 0.00 0.00 34.44 2.90
601 602 6.432403 TTTACCCAAATTTCTTGCCTCATT 57.568 33.333 0.00 0.00 0.00 2.57
602 603 4.980339 ACCCAAATTTCTTGCCTCATTT 57.020 36.364 0.00 0.00 0.00 2.32
603 604 4.898320 ACCCAAATTTCTTGCCTCATTTC 58.102 39.130 0.00 0.00 0.00 2.17
604 605 3.928375 CCCAAATTTCTTGCCTCATTTCG 59.072 43.478 0.00 0.00 0.00 3.46
605 606 3.368843 CCAAATTTCTTGCCTCATTTCGC 59.631 43.478 0.00 0.00 0.00 4.70
606 607 4.240096 CAAATTTCTTGCCTCATTTCGCT 58.760 39.130 0.00 0.00 0.00 4.93
607 608 2.995466 TTTCTTGCCTCATTTCGCTG 57.005 45.000 0.00 0.00 0.00 5.18
608 609 1.167851 TTCTTGCCTCATTTCGCTGG 58.832 50.000 0.00 0.00 0.00 4.85
609 610 0.324614 TCTTGCCTCATTTCGCTGGA 59.675 50.000 0.00 0.00 0.00 3.86
610 611 1.065199 TCTTGCCTCATTTCGCTGGAT 60.065 47.619 0.00 0.00 0.00 3.41
612 613 2.936919 TGCCTCATTTCGCTGGATAT 57.063 45.000 0.00 0.00 0.00 1.63
613 614 4.040339 TCTTGCCTCATTTCGCTGGATATA 59.960 41.667 0.00 0.00 0.00 0.86
615 616 4.910195 TGCCTCATTTCGCTGGATATAAT 58.090 39.130 0.00 0.00 0.00 1.28
636 4892 1.463674 GGTCCAGCGAAAACCATCAT 58.536 50.000 0.00 0.00 33.11 2.45
637 4893 1.133025 GGTCCAGCGAAAACCATCATG 59.867 52.381 0.00 0.00 33.11 3.07
644 4900 1.002468 CGAAAACCATCATGATCCGGC 60.002 52.381 4.86 0.00 0.00 6.13
645 4901 1.002468 GAAAACCATCATGATCCGGCG 60.002 52.381 4.86 0.00 0.00 6.46
646 4902 0.180171 AAACCATCATGATCCGGCGA 59.820 50.000 9.30 0.00 0.00 5.54
650 4906 1.881973 CCATCATGATCCGGCGAAAAT 59.118 47.619 9.30 0.00 0.00 1.82
653 4909 2.143122 TCATGATCCGGCGAAAATAGC 58.857 47.619 9.30 0.00 0.00 2.97
671 4927 2.400573 AGCAGAGATCTGATTGGAGCT 58.599 47.619 13.98 0.00 46.59 4.09
720 4976 1.751351 CGGAGCTCATAGTCAGACCAA 59.249 52.381 17.19 0.00 0.00 3.67
895 5152 1.711060 AAAGTCACAACGCCACACCG 61.711 55.000 0.00 0.00 0.00 4.94
913 5170 1.535462 CCGGCACCCAATAATCGAATC 59.465 52.381 0.00 0.00 0.00 2.52
932 5189 1.066303 TCCAAAATGTCACAACACGCC 59.934 47.619 0.00 0.00 38.48 5.68
963 5224 1.928868 ACCCAGGCAAGGATTTTCAG 58.071 50.000 0.00 0.00 0.00 3.02
968 5234 3.562176 CCAGGCAAGGATTTTCAGGTAGT 60.562 47.826 0.00 0.00 0.00 2.73
969 5235 4.324254 CCAGGCAAGGATTTTCAGGTAGTA 60.324 45.833 0.00 0.00 0.00 1.82
972 5238 7.054124 CAGGCAAGGATTTTCAGGTAGTATAA 58.946 38.462 0.00 0.00 0.00 0.98
980 5246 4.380841 TTCAGGTAGTATAACCAGCACG 57.619 45.455 0.00 0.00 42.40 5.34
1064 5333 0.320421 GCCTTCTGCTACGTGACCAA 60.320 55.000 0.00 0.00 36.87 3.67
1744 6019 1.166531 GGAAGCGTGGCACAAGTTCT 61.167 55.000 19.09 3.16 44.16 3.01
1844 6908 2.046892 GCGGCTGAGGCAAGAAGA 60.047 61.111 6.86 0.00 40.87 2.87
1912 6976 1.079405 GTGATCGACCGAAAGCCCA 60.079 57.895 0.00 0.00 0.00 5.36
1932 6996 9.440773 AAGCCCAAGAATTTCATCTTTAATTTC 57.559 29.630 0.00 0.00 37.56 2.17
2113 7179 7.031372 TCTTTATTTGCATGTCAGCTTTCATC 58.969 34.615 0.00 0.00 34.99 2.92
2173 7337 8.260114 CCTATGTGTCTATATGGAATACATGCA 58.740 37.037 20.89 0.00 40.82 3.96
2205 7369 6.062434 TGGGTGAACAAATACACTAAAACG 57.938 37.500 0.00 0.00 37.22 3.60
2280 7449 5.641155 AGGGAGTATTTGTTACTTTGGCTT 58.359 37.500 0.00 0.00 41.35 4.35
2302 7471 7.255569 GCTTAAGCGGTTTTGGTATCTAATTT 58.744 34.615 12.53 0.00 0.00 1.82
2364 7533 5.195001 TGGGTTTTGCTTGTAGTTGAATC 57.805 39.130 0.00 0.00 0.00 2.52
2572 7747 7.439056 ACTTTTGATTTGAATAGTTGCTGGTTG 59.561 33.333 0.00 0.00 0.00 3.77
2671 7847 1.140052 TCCACAAGCTCCGAAACAAGA 59.860 47.619 0.00 0.00 0.00 3.02
2695 7871 6.909550 AAATCATAGCAAACAAGGGTGTAA 57.090 33.333 0.00 0.00 36.80 2.41
2841 8017 5.527582 GTCATTGTTTGTACAGTGGAGAACT 59.472 40.000 0.00 0.00 41.04 3.01
3017 8193 1.145571 TTGGGGGCATATGTAGGACC 58.854 55.000 4.29 0.00 33.46 4.46
3034 8210 1.521681 CCTGATCTTCGCCGGAACC 60.522 63.158 5.05 0.00 0.00 3.62
3589 8765 3.249189 GGGCTGACCACACCTCCA 61.249 66.667 0.00 0.00 39.85 3.86
3636 8812 7.502226 CCCCAGATGCATAACAACTTAATTAGA 59.498 37.037 0.00 0.00 0.00 2.10
3648 8824 6.373216 ACAACTTAATTAGACGCCATTAGCAA 59.627 34.615 0.00 0.00 44.04 3.91
3673 8850 9.646522 AATGCCATAAAGTAGTTGGAATAAGAT 57.353 29.630 0.00 0.00 28.12 2.40
3833 9013 0.466543 AATTGTGCGGGGCGTCTATA 59.533 50.000 0.00 0.00 0.00 1.31
4025 9207 0.960364 TCATCCTGAAAAGCACCGGC 60.960 55.000 0.00 0.00 41.61 6.13
4091 9273 1.201965 GCGCACAATGAAGTCTGCTAC 60.202 52.381 0.30 0.00 0.00 3.58
4110 9292 8.244113 TCTGCTACGATACCATGTATTTAGATG 58.756 37.037 0.00 0.00 0.00 2.90
4113 9295 8.861101 GCTACGATACCATGTATTTAGATGTTC 58.139 37.037 0.00 0.00 0.00 3.18
4338 9524 6.917477 CGATTGACAAATTTGACCTTCTTTGA 59.083 34.615 24.64 0.00 33.79 2.69
4385 9571 2.982470 GTCAAAATTTCTCTGCCAAGCG 59.018 45.455 0.00 0.00 0.00 4.68
4396 9582 3.087666 GCCAAGCGGAGAGGAGGAG 62.088 68.421 0.00 0.00 0.00 3.69
4465 9651 1.909302 GTTGGGGTTGAGGATCTCAGA 59.091 52.381 0.00 0.00 41.75 3.27
4491 9677 0.309302 CCGCCATTTTCGACAACACA 59.691 50.000 0.00 0.00 0.00 3.72
4602 9788 3.134442 AGCTCCTATCTTTGGCTCAAGAG 59.866 47.826 6.01 0.00 0.00 2.85
4604 9790 3.708631 CTCCTATCTTTGGCTCAAGAGGA 59.291 47.826 0.00 6.77 0.00 3.71
4629 9815 9.362151 GAAAAGGGTGGTCCATATTATATTGAA 57.638 33.333 0.00 0.00 38.24 2.69
4630 9816 9.897040 AAAAGGGTGGTCCATATTATATTGAAT 57.103 29.630 0.00 0.00 38.24 2.57
4631 9817 9.897040 AAAGGGTGGTCCATATTATATTGAATT 57.103 29.630 0.00 0.00 38.24 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.029947 CCCCATCGAACCGGAAAAGG 61.030 60.000 9.46 1.53 37.30 3.11
2 3 0.322187 ACCCCATCGAACCGGAAAAG 60.322 55.000 9.46 0.00 0.00 2.27
3 4 0.321830 GACCCCATCGAACCGGAAAA 60.322 55.000 9.46 0.00 0.00 2.29
4 5 1.297364 GACCCCATCGAACCGGAAA 59.703 57.895 9.46 0.00 0.00 3.13
14 15 3.799755 GCGTGTTGCGACCCCATC 61.800 66.667 0.45 0.00 44.77 3.51
35 36 2.581354 CCAGACTCTTCCCGCCAG 59.419 66.667 0.00 0.00 0.00 4.85
36 37 3.706373 GCCAGACTCTTCCCGCCA 61.706 66.667 0.00 0.00 0.00 5.69
38 39 2.185608 GAGCCAGACTCTTCCCGC 59.814 66.667 0.00 0.00 42.62 6.13
45 46 2.508887 CGCAGCAGAGCCAGACTC 60.509 66.667 0.00 0.00 46.66 3.36
46 47 4.079850 CCGCAGCAGAGCCAGACT 62.080 66.667 0.00 0.00 0.00 3.24
66 67 2.431942 GCACAAGCAGCATGTGGC 60.432 61.111 27.47 17.69 46.43 5.01
67 68 2.260434 GGCACAAGCAGCATGTGG 59.740 61.111 27.47 12.73 46.43 4.17
69 70 3.367743 CCGGCACAAGCAGCATGT 61.368 61.111 0.00 0.00 44.61 3.21
70 71 4.124351 CCCGGCACAAGCAGCATG 62.124 66.667 0.00 0.00 44.61 4.06
91 92 4.824515 AGGAGTCGGAGGCGGAGG 62.825 72.222 0.00 0.00 36.95 4.30
92 93 3.522731 CAGGAGTCGGAGGCGGAG 61.523 72.222 0.00 0.00 36.95 4.63
95 96 3.842923 ATGCAGGAGTCGGAGGCG 61.843 66.667 0.00 0.00 36.95 5.52
96 97 2.202987 CATGCAGGAGTCGGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
97 98 2.202987 GCATGCAGGAGTCGGAGG 60.203 66.667 14.21 0.00 0.00 4.30
98 99 2.584418 CGCATGCAGGAGTCGGAG 60.584 66.667 19.57 0.00 0.00 4.63
99 100 4.819761 GCGCATGCAGGAGTCGGA 62.820 66.667 19.57 0.00 42.15 4.55
114 115 2.887568 GTCTCCCGTGCAGATGCG 60.888 66.667 0.00 0.00 45.83 4.73
115 116 2.887568 CGTCTCCCGTGCAGATGC 60.888 66.667 0.00 0.00 42.50 3.91
116 117 2.887568 GCGTCTCCCGTGCAGATG 60.888 66.667 0.00 0.00 39.32 2.90
117 118 4.498520 CGCGTCTCCCGTGCAGAT 62.499 66.667 0.00 0.00 40.62 2.90
165 166 4.344865 TTCCCCTCCAGCGCCAAC 62.345 66.667 2.29 0.00 0.00 3.77
166 167 4.033776 CTTCCCCTCCAGCGCCAA 62.034 66.667 2.29 0.00 0.00 4.52
171 172 3.093172 CTCCCCTTCCCCTCCAGC 61.093 72.222 0.00 0.00 0.00 4.85
172 173 1.690985 GTCTCCCCTTCCCCTCCAG 60.691 68.421 0.00 0.00 0.00 3.86
181 182 7.444901 CTAGATCTAGAGTAGGGTCTCCCCTT 61.445 50.000 23.14 0.00 46.50 3.95
184 185 5.095809 TCTAGATCTAGAGTAGGGTCTCCC 58.904 50.000 25.54 0.00 39.46 4.30
196 197 2.036089 TCTGCGTCGCTCTAGATCTAGA 59.964 50.000 27.00 27.00 39.67 2.43
197 198 2.409012 TCTGCGTCGCTCTAGATCTAG 58.591 52.381 21.81 21.81 34.56 2.43
198 199 2.409012 CTCTGCGTCGCTCTAGATCTA 58.591 52.381 19.50 1.69 0.00 1.98
200 201 0.385473 GCTCTGCGTCGCTCTAGATC 60.385 60.000 19.50 5.01 0.00 2.75
201 202 0.817634 AGCTCTGCGTCGCTCTAGAT 60.818 55.000 19.50 8.75 0.00 1.98
202 203 1.450491 AGCTCTGCGTCGCTCTAGA 60.450 57.895 19.50 11.90 0.00 2.43
203 204 1.298264 CAGCTCTGCGTCGCTCTAG 60.298 63.158 19.50 13.33 33.45 2.43
204 205 2.765356 CCAGCTCTGCGTCGCTCTA 61.765 63.158 19.50 2.70 33.45 2.43
205 206 4.127040 CCAGCTCTGCGTCGCTCT 62.127 66.667 19.50 7.35 33.45 4.09
207 208 4.427661 GTCCAGCTCTGCGTCGCT 62.428 66.667 19.50 0.00 36.83 4.93
209 210 4.103103 TCGTCCAGCTCTGCGTCG 62.103 66.667 0.00 0.00 0.00 5.12
210 211 2.202544 CTCGTCCAGCTCTGCGTC 60.203 66.667 0.00 0.00 0.00 5.19
211 212 4.427661 GCTCGTCCAGCTCTGCGT 62.428 66.667 0.00 0.00 45.83 5.24
215 216 4.127040 CAGCGCTCGTCCAGCTCT 62.127 66.667 7.13 0.00 44.48 4.09
219 220 4.504916 CCTCCAGCGCTCGTCCAG 62.505 72.222 7.13 0.00 0.00 3.86
224 225 4.521062 CTTCCCCTCCAGCGCTCG 62.521 72.222 7.13 0.00 0.00 5.03
230 231 0.550147 TTTCTCCCCTTCCCCTCCAG 60.550 60.000 0.00 0.00 0.00 3.86
231 232 0.123266 ATTTCTCCCCTTCCCCTCCA 59.877 55.000 0.00 0.00 0.00 3.86
232 233 0.553333 CATTTCTCCCCTTCCCCTCC 59.447 60.000 0.00 0.00 0.00 4.30
234 235 1.641192 GTTCATTTCTCCCCTTCCCCT 59.359 52.381 0.00 0.00 0.00 4.79
235 236 1.641192 AGTTCATTTCTCCCCTTCCCC 59.359 52.381 0.00 0.00 0.00 4.81
238 239 5.073428 AGTCAAAGTTCATTTCTCCCCTTC 58.927 41.667 0.00 0.00 0.00 3.46
239 240 5.066913 AGTCAAAGTTCATTTCTCCCCTT 57.933 39.130 0.00 0.00 0.00 3.95
240 241 4.731313 AGTCAAAGTTCATTTCTCCCCT 57.269 40.909 0.00 0.00 0.00 4.79
241 242 5.301805 TGAAAGTCAAAGTTCATTTCTCCCC 59.698 40.000 0.00 0.00 32.42 4.81
242 243 6.391227 TGAAAGTCAAAGTTCATTTCTCCC 57.609 37.500 0.00 0.00 32.42 4.30
244 245 8.313931 CGTTTTGAAAGTCAAAGTTCATTTCTC 58.686 33.333 3.83 0.00 45.77 2.87
245 246 8.026607 TCGTTTTGAAAGTCAAAGTTCATTTCT 58.973 29.630 3.83 0.00 45.77 2.52
247 248 7.062956 GGTCGTTTTGAAAGTCAAAGTTCATTT 59.937 33.333 3.83 0.00 45.77 2.32
248 249 6.530181 GGTCGTTTTGAAAGTCAAAGTTCATT 59.470 34.615 3.83 0.00 45.77 2.57
249 250 6.033966 GGTCGTTTTGAAAGTCAAAGTTCAT 58.966 36.000 3.83 0.00 45.77 2.57
250 251 5.182380 AGGTCGTTTTGAAAGTCAAAGTTCA 59.818 36.000 3.83 0.00 45.77 3.18
251 252 5.637809 AGGTCGTTTTGAAAGTCAAAGTTC 58.362 37.500 3.83 0.13 45.77 3.01
252 253 5.638596 AGGTCGTTTTGAAAGTCAAAGTT 57.361 34.783 3.83 0.00 45.77 2.66
253 254 5.638596 AAGGTCGTTTTGAAAGTCAAAGT 57.361 34.783 3.83 0.00 45.77 2.66
255 256 7.763356 TGATTAAGGTCGTTTTGAAAGTCAAA 58.237 30.769 0.00 0.00 43.84 2.69
256 257 7.323049 TGATTAAGGTCGTTTTGAAAGTCAA 57.677 32.000 0.00 0.00 34.03 3.18
257 258 6.928979 TGATTAAGGTCGTTTTGAAAGTCA 57.071 33.333 0.00 0.00 0.00 3.41
259 260 8.194769 ACAAATGATTAAGGTCGTTTTGAAAGT 58.805 29.630 9.50 0.00 35.67 2.66
261 262 8.812329 CAACAAATGATTAAGGTCGTTTTGAAA 58.188 29.630 9.50 0.00 35.67 2.69
262 263 8.191446 TCAACAAATGATTAAGGTCGTTTTGAA 58.809 29.630 9.50 0.00 35.67 2.69
263 264 7.708051 TCAACAAATGATTAAGGTCGTTTTGA 58.292 30.769 9.50 4.08 35.67 2.69
264 265 7.922505 TCAACAAATGATTAAGGTCGTTTTG 57.077 32.000 0.00 0.00 35.67 2.44
290 291 9.158233 GCTACGGGCTATAATACATTTAAATGA 57.842 33.333 30.18 16.30 37.63 2.57
292 293 9.509956 TTGCTACGGGCTATAATACATTTAAAT 57.490 29.630 0.00 0.00 42.39 1.40
293 294 8.776470 GTTGCTACGGGCTATAATACATTTAAA 58.224 33.333 4.43 0.00 42.39 1.52
294 295 7.932491 TGTTGCTACGGGCTATAATACATTTAA 59.068 33.333 4.43 0.00 42.39 1.52
295 296 7.385752 GTGTTGCTACGGGCTATAATACATTTA 59.614 37.037 4.43 0.00 42.39 1.40
296 297 6.204108 GTGTTGCTACGGGCTATAATACATTT 59.796 38.462 4.43 0.00 42.39 2.32
297 298 5.699458 GTGTTGCTACGGGCTATAATACATT 59.301 40.000 4.43 0.00 42.39 2.71
298 299 5.221561 TGTGTTGCTACGGGCTATAATACAT 60.222 40.000 4.43 0.00 42.39 2.29
299 300 4.099727 TGTGTTGCTACGGGCTATAATACA 59.900 41.667 4.43 3.05 42.39 2.29
300 301 4.446719 GTGTGTTGCTACGGGCTATAATAC 59.553 45.833 4.43 0.88 42.39 1.89
302 303 3.463944 GTGTGTTGCTACGGGCTATAAT 58.536 45.455 4.43 0.00 42.39 1.28
303 304 2.736081 CGTGTGTTGCTACGGGCTATAA 60.736 50.000 4.43 0.00 42.39 0.98
304 305 1.202325 CGTGTGTTGCTACGGGCTATA 60.202 52.381 4.43 0.00 42.39 1.31
305 306 0.459585 CGTGTGTTGCTACGGGCTAT 60.460 55.000 4.43 0.00 42.39 2.97
306 307 1.080366 CGTGTGTTGCTACGGGCTA 60.080 57.895 4.43 0.00 42.39 3.93
307 308 2.357034 CGTGTGTTGCTACGGGCT 60.357 61.111 4.43 0.00 42.39 5.19
311 312 0.599204 AACTCCCGTGTGTTGCTACG 60.599 55.000 0.00 0.00 39.83 3.51
312 313 1.145803 GAACTCCCGTGTGTTGCTAC 58.854 55.000 0.00 0.00 0.00 3.58
313 314 1.045407 AGAACTCCCGTGTGTTGCTA 58.955 50.000 0.00 0.00 0.00 3.49
314 315 1.045407 TAGAACTCCCGTGTGTTGCT 58.955 50.000 0.00 0.00 0.00 3.91
317 318 1.343465 CTGGTAGAACTCCCGTGTGTT 59.657 52.381 0.00 0.00 0.00 3.32
318 319 0.966920 CTGGTAGAACTCCCGTGTGT 59.033 55.000 0.00 0.00 0.00 3.72
319 320 0.966920 ACTGGTAGAACTCCCGTGTG 59.033 55.000 0.00 0.00 0.00 3.82
320 321 1.713297 AACTGGTAGAACTCCCGTGT 58.287 50.000 0.00 0.00 0.00 4.49
322 323 3.438183 ACATAACTGGTAGAACTCCCGT 58.562 45.455 0.00 0.00 0.00 5.28
323 324 4.467198 AACATAACTGGTAGAACTCCCG 57.533 45.455 0.00 0.00 0.00 5.14
325 326 8.235226 GCTTTTAAACATAACTGGTAGAACTCC 58.765 37.037 0.00 0.00 0.00 3.85
326 327 9.000486 AGCTTTTAAACATAACTGGTAGAACTC 58.000 33.333 0.00 0.00 0.00 3.01
327 328 8.919777 AGCTTTTAAACATAACTGGTAGAACT 57.080 30.769 0.00 0.00 0.00 3.01
330 331 7.380536 TCGAGCTTTTAAACATAACTGGTAGA 58.619 34.615 0.00 0.00 0.00 2.59
331 332 7.331193 ACTCGAGCTTTTAAACATAACTGGTAG 59.669 37.037 13.61 0.00 0.00 3.18
332 333 7.156673 ACTCGAGCTTTTAAACATAACTGGTA 58.843 34.615 13.61 0.00 0.00 3.25
333 334 5.995897 ACTCGAGCTTTTAAACATAACTGGT 59.004 36.000 13.61 0.00 0.00 4.00
334 335 6.147164 TGACTCGAGCTTTTAAACATAACTGG 59.853 38.462 13.61 0.00 0.00 4.00
335 336 7.117241 TGACTCGAGCTTTTAAACATAACTG 57.883 36.000 13.61 0.00 0.00 3.16
336 337 7.724305 TTGACTCGAGCTTTTAAACATAACT 57.276 32.000 13.61 0.00 0.00 2.24
337 338 8.776680 TTTTGACTCGAGCTTTTAAACATAAC 57.223 30.769 13.61 0.00 0.00 1.89
339 340 9.393249 CATTTTTGACTCGAGCTTTTAAACATA 57.607 29.630 13.61 0.00 0.00 2.29
341 342 6.198216 GCATTTTTGACTCGAGCTTTTAAACA 59.802 34.615 13.61 1.07 0.00 2.83
344 345 5.826586 TGCATTTTTGACTCGAGCTTTTAA 58.173 33.333 13.61 2.27 0.00 1.52
345 346 5.431420 TGCATTTTTGACTCGAGCTTTTA 57.569 34.783 13.61 0.00 0.00 1.52
346 347 4.305989 TGCATTTTTGACTCGAGCTTTT 57.694 36.364 13.61 0.00 0.00 2.27
347 348 3.988379 TGCATTTTTGACTCGAGCTTT 57.012 38.095 13.61 0.00 0.00 3.51
348 349 4.510038 AATGCATTTTTGACTCGAGCTT 57.490 36.364 13.61 0.00 0.00 3.74
349 350 5.220931 GGATAATGCATTTTTGACTCGAGCT 60.221 40.000 18.75 0.00 0.00 4.09
352 353 7.498900 ACATAGGATAATGCATTTTTGACTCGA 59.501 33.333 18.75 0.00 0.00 4.04
353 354 7.642669 ACATAGGATAATGCATTTTTGACTCG 58.357 34.615 18.75 3.57 0.00 4.18
370 371 7.448469 GCCCATTGTTGTTCTATTACATAGGAT 59.552 37.037 0.00 0.00 33.64 3.24
371 372 6.770785 GCCCATTGTTGTTCTATTACATAGGA 59.229 38.462 0.00 0.00 33.64 2.94
372 373 6.016276 GGCCCATTGTTGTTCTATTACATAGG 60.016 42.308 0.00 0.00 33.64 2.57
373 374 6.545666 TGGCCCATTGTTGTTCTATTACATAG 59.454 38.462 0.00 0.00 0.00 2.23
374 375 6.427441 TGGCCCATTGTTGTTCTATTACATA 58.573 36.000 0.00 0.00 0.00 2.29
375 376 5.268387 TGGCCCATTGTTGTTCTATTACAT 58.732 37.500 0.00 0.00 0.00 2.29
376 377 4.667573 TGGCCCATTGTTGTTCTATTACA 58.332 39.130 0.00 0.00 0.00 2.41
378 379 6.549364 CCTAATGGCCCATTGTTGTTCTATTA 59.451 38.462 19.34 0.00 35.54 0.98
379 380 5.363580 CCTAATGGCCCATTGTTGTTCTATT 59.636 40.000 19.34 0.00 35.54 1.73
381 382 4.017958 TCCTAATGGCCCATTGTTGTTCTA 60.018 41.667 19.34 0.00 35.54 2.10
382 383 3.099141 CCTAATGGCCCATTGTTGTTCT 58.901 45.455 19.34 0.00 35.54 3.01
383 384 3.096092 TCCTAATGGCCCATTGTTGTTC 58.904 45.455 19.34 0.00 35.54 3.18
384 385 3.182887 TCCTAATGGCCCATTGTTGTT 57.817 42.857 19.34 0.00 35.54 2.83
385 386 2.917713 TCCTAATGGCCCATTGTTGT 57.082 45.000 19.34 0.00 35.54 3.32
386 387 3.515104 ACTTTCCTAATGGCCCATTGTTG 59.485 43.478 19.34 8.77 35.54 3.33
387 388 3.790126 ACTTTCCTAATGGCCCATTGTT 58.210 40.909 19.34 0.00 35.54 2.83
388 389 3.473113 ACTTTCCTAATGGCCCATTGT 57.527 42.857 19.34 4.16 35.54 2.71
389 390 5.930837 TTTACTTTCCTAATGGCCCATTG 57.069 39.130 19.34 8.80 35.54 2.82
390 391 6.022958 AGTTTTACTTTCCTAATGGCCCATT 58.977 36.000 14.51 14.51 37.80 3.16
391 392 5.589831 AGTTTTACTTTCCTAATGGCCCAT 58.410 37.500 0.00 0.00 0.00 4.00
392 393 5.005628 AGTTTTACTTTCCTAATGGCCCA 57.994 39.130 0.00 0.00 0.00 5.36
393 394 4.401519 GGAGTTTTACTTTCCTAATGGCCC 59.598 45.833 0.00 0.00 0.00 5.80
394 395 5.262009 AGGAGTTTTACTTTCCTAATGGCC 58.738 41.667 0.00 0.00 39.51 5.36
397 398 9.589111 GTCTAGAGGAGTTTTACTTTCCTAATG 57.411 37.037 0.00 0.00 41.32 1.90
399 400 8.953223 AGTCTAGAGGAGTTTTACTTTCCTAA 57.047 34.615 0.00 0.00 41.32 2.69
400 401 8.953223 AAGTCTAGAGGAGTTTTACTTTCCTA 57.047 34.615 0.00 0.00 41.32 2.94
426 427 6.044404 AGGAATGGAGTAAGAGAGGTGAAAAA 59.956 38.462 0.00 0.00 0.00 1.94
427 428 5.548056 AGGAATGGAGTAAGAGAGGTGAAAA 59.452 40.000 0.00 0.00 0.00 2.29
428 429 5.094387 AGGAATGGAGTAAGAGAGGTGAAA 58.906 41.667 0.00 0.00 0.00 2.69
429 430 4.689062 AGGAATGGAGTAAGAGAGGTGAA 58.311 43.478 0.00 0.00 0.00 3.18
430 431 4.264397 TGAGGAATGGAGTAAGAGAGGTGA 60.264 45.833 0.00 0.00 0.00 4.02
431 432 4.026744 TGAGGAATGGAGTAAGAGAGGTG 58.973 47.826 0.00 0.00 0.00 4.00
432 433 4.027437 GTGAGGAATGGAGTAAGAGAGGT 58.973 47.826 0.00 0.00 0.00 3.85
434 435 5.186797 AGTTGTGAGGAATGGAGTAAGAGAG 59.813 44.000 0.00 0.00 0.00 3.20
435 436 5.087323 AGTTGTGAGGAATGGAGTAAGAGA 58.913 41.667 0.00 0.00 0.00 3.10
436 437 5.413309 AGTTGTGAGGAATGGAGTAAGAG 57.587 43.478 0.00 0.00 0.00 2.85
437 438 6.928348 TTAGTTGTGAGGAATGGAGTAAGA 57.072 37.500 0.00 0.00 0.00 2.10
439 440 7.444183 CAGTTTTAGTTGTGAGGAATGGAGTAA 59.556 37.037 0.00 0.00 0.00 2.24
440 441 6.934645 CAGTTTTAGTTGTGAGGAATGGAGTA 59.065 38.462 0.00 0.00 0.00 2.59
441 442 5.765182 CAGTTTTAGTTGTGAGGAATGGAGT 59.235 40.000 0.00 0.00 0.00 3.85
442 443 5.335191 GCAGTTTTAGTTGTGAGGAATGGAG 60.335 44.000 0.00 0.00 0.00 3.86
443 444 4.518970 GCAGTTTTAGTTGTGAGGAATGGA 59.481 41.667 0.00 0.00 0.00 3.41
444 445 4.321230 GGCAGTTTTAGTTGTGAGGAATGG 60.321 45.833 0.00 0.00 0.00 3.16
445 446 4.278170 TGGCAGTTTTAGTTGTGAGGAATG 59.722 41.667 0.00 0.00 0.00 2.67
446 447 4.278419 GTGGCAGTTTTAGTTGTGAGGAAT 59.722 41.667 0.00 0.00 0.00 3.01
447 448 3.630312 GTGGCAGTTTTAGTTGTGAGGAA 59.370 43.478 0.00 0.00 0.00 3.36
448 449 3.211045 GTGGCAGTTTTAGTTGTGAGGA 58.789 45.455 0.00 0.00 0.00 3.71
451 452 2.907634 TCGTGGCAGTTTTAGTTGTGA 58.092 42.857 0.00 0.00 0.00 3.58
453 454 4.553938 CGATTTCGTGGCAGTTTTAGTTGT 60.554 41.667 0.00 0.00 34.11 3.32
454 455 3.906008 CGATTTCGTGGCAGTTTTAGTTG 59.094 43.478 0.00 0.00 34.11 3.16
455 456 4.141855 CGATTTCGTGGCAGTTTTAGTT 57.858 40.909 0.00 0.00 34.11 2.24
456 457 3.806316 CGATTTCGTGGCAGTTTTAGT 57.194 42.857 0.00 0.00 34.11 2.24
470 471 2.602217 GGTGGCATATGCGAACGATTTC 60.602 50.000 21.04 4.85 43.26 2.17
471 472 1.333619 GGTGGCATATGCGAACGATTT 59.666 47.619 21.04 0.00 43.26 2.17
472 473 0.944386 GGTGGCATATGCGAACGATT 59.056 50.000 21.04 0.00 43.26 3.34
473 474 0.884704 GGGTGGCATATGCGAACGAT 60.885 55.000 19.79 0.00 43.26 3.73
474 475 1.522806 GGGTGGCATATGCGAACGA 60.523 57.895 19.79 0.41 43.26 3.85
475 476 1.498865 GAGGGTGGCATATGCGAACG 61.499 60.000 19.79 0.00 43.26 3.95
476 477 1.166531 GGAGGGTGGCATATGCGAAC 61.167 60.000 18.55 18.55 43.26 3.95
477 478 1.148273 GGAGGGTGGCATATGCGAA 59.852 57.895 21.04 9.51 43.26 4.70
478 479 1.344953 AAGGAGGGTGGCATATGCGA 61.345 55.000 21.04 15.19 43.26 5.10
479 480 1.149174 AAGGAGGGTGGCATATGCG 59.851 57.895 21.04 0.00 43.26 4.73
480 481 0.825010 CCAAGGAGGGTGGCATATGC 60.825 60.000 19.79 19.79 41.14 3.14
481 482 3.426903 CCAAGGAGGGTGGCATATG 57.573 57.895 0.00 0.00 0.00 1.78
487 488 2.359975 GTTCGCCAAGGAGGGTGG 60.360 66.667 0.00 0.00 38.97 4.61
490 491 1.599797 AAACGTTCGCCAAGGAGGG 60.600 57.895 0.00 0.00 38.09 4.30
493 494 3.027292 GCAAACGTTCGCCAAGGA 58.973 55.556 0.00 0.00 0.00 3.36
506 507 0.393820 AGGACTCGGTTAACGGCAAA 59.606 50.000 8.23 0.00 44.45 3.68
507 508 1.255882 TAGGACTCGGTTAACGGCAA 58.744 50.000 8.23 0.00 44.45 4.52
508 509 1.135527 CATAGGACTCGGTTAACGGCA 59.864 52.381 8.23 0.00 44.45 5.69
509 510 1.406539 TCATAGGACTCGGTTAACGGC 59.593 52.381 8.23 0.00 44.45 5.68
510 511 5.443185 TTATCATAGGACTCGGTTAACGG 57.557 43.478 6.82 6.82 44.45 4.44
511 512 5.793952 CGATTATCATAGGACTCGGTTAACG 59.206 44.000 0.00 0.00 46.11 3.18
514 515 6.889301 AACGATTATCATAGGACTCGGTTA 57.111 37.500 9.63 0.00 31.05 2.85
516 517 5.786264 AAACGATTATCATAGGACTCGGT 57.214 39.130 9.63 1.81 31.05 4.69
517 518 8.583810 TTTTAAACGATTATCATAGGACTCGG 57.416 34.615 9.63 0.00 31.05 4.63
526 527 9.074576 GGTCCCCTTATTTTAAACGATTATCAT 57.925 33.333 0.00 0.00 0.00 2.45
530 531 6.972490 AGGGTCCCCTTATTTTAAACGATTA 58.028 36.000 3.51 0.00 45.70 1.75
531 532 5.834460 AGGGTCCCCTTATTTTAAACGATT 58.166 37.500 3.51 0.00 45.70 3.34
532 533 5.461516 AGGGTCCCCTTATTTTAAACGAT 57.538 39.130 3.51 0.00 45.70 3.73
533 534 4.932911 AGGGTCCCCTTATTTTAAACGA 57.067 40.909 3.51 0.00 45.70 3.85
534 535 7.649533 ATTTAGGGTCCCCTTATTTTAAACG 57.350 36.000 10.83 0.00 45.70 3.60
538 539 8.571345 AGCTTAATTTAGGGTCCCCTTATTTTA 58.429 33.333 10.83 0.89 45.70 1.52
539 540 7.427501 AGCTTAATTTAGGGTCCCCTTATTTT 58.572 34.615 10.83 1.80 45.70 1.82
540 541 6.993408 AGCTTAATTTAGGGTCCCCTTATTT 58.007 36.000 10.83 6.94 45.70 1.40
541 542 6.607809 AGCTTAATTTAGGGTCCCCTTATT 57.392 37.500 10.83 12.67 45.70 1.40
543 544 6.852908 TGATAGCTTAATTTAGGGTCCCCTTA 59.147 38.462 10.83 0.00 45.70 2.69
544 545 5.674958 TGATAGCTTAATTTAGGGTCCCCTT 59.325 40.000 10.83 0.00 45.70 3.95
546 547 5.073280 ACTGATAGCTTAATTTAGGGTCCCC 59.927 44.000 3.51 0.00 0.00 4.81
547 548 6.183361 TGACTGATAGCTTAATTTAGGGTCCC 60.183 42.308 0.00 0.00 0.00 4.46
548 549 6.827727 TGACTGATAGCTTAATTTAGGGTCC 58.172 40.000 0.00 0.00 0.00 4.46
549 550 7.329717 CGATGACTGATAGCTTAATTTAGGGTC 59.670 40.741 0.00 0.00 0.00 4.46
551 552 6.591834 CCGATGACTGATAGCTTAATTTAGGG 59.408 42.308 0.00 0.00 0.00 3.53
553 554 8.994429 ATCCGATGACTGATAGCTTAATTTAG 57.006 34.615 0.00 0.00 0.00 1.85
554 555 9.778741 AAATCCGATGACTGATAGCTTAATTTA 57.221 29.630 0.00 0.00 0.00 1.40
555 556 8.682936 AAATCCGATGACTGATAGCTTAATTT 57.317 30.769 0.00 0.00 0.00 1.82
556 557 9.209175 GTAAATCCGATGACTGATAGCTTAATT 57.791 33.333 0.00 0.00 0.00 1.40
557 558 7.819900 GGTAAATCCGATGACTGATAGCTTAAT 59.180 37.037 0.00 0.00 0.00 1.40
558 559 7.152645 GGTAAATCCGATGACTGATAGCTTAA 58.847 38.462 0.00 0.00 0.00 1.85
559 560 6.295123 GGGTAAATCCGATGACTGATAGCTTA 60.295 42.308 0.00 0.00 37.00 3.09
560 561 5.511545 GGGTAAATCCGATGACTGATAGCTT 60.512 44.000 0.00 0.00 37.00 3.74
561 562 4.021016 GGGTAAATCCGATGACTGATAGCT 60.021 45.833 0.00 0.00 37.00 3.32
563 564 5.468540 TGGGTAAATCCGATGACTGATAG 57.531 43.478 0.00 0.00 37.00 2.08
564 565 5.880164 TTGGGTAAATCCGATGACTGATA 57.120 39.130 0.00 0.00 37.00 2.15
566 567 4.561500 TTTGGGTAAATCCGATGACTGA 57.438 40.909 0.00 0.00 37.00 3.41
568 569 6.187682 AGAAATTTGGGTAAATCCGATGACT 58.812 36.000 0.00 0.00 35.50 3.41
570 571 6.627065 GCAAGAAATTTGGGTAAATCCGATGA 60.627 38.462 0.00 0.00 35.50 2.92
571 572 5.519927 GCAAGAAATTTGGGTAAATCCGATG 59.480 40.000 0.00 0.00 35.50 3.84
572 573 5.395214 GGCAAGAAATTTGGGTAAATCCGAT 60.395 40.000 0.00 0.00 35.50 4.18
573 574 4.081917 GGCAAGAAATTTGGGTAAATCCGA 60.082 41.667 0.00 0.00 35.50 4.55
574 575 4.081697 AGGCAAGAAATTTGGGTAAATCCG 60.082 41.667 0.00 0.00 35.50 4.18
575 576 5.046663 TGAGGCAAGAAATTTGGGTAAATCC 60.047 40.000 0.00 0.00 35.50 3.01
576 577 6.036577 TGAGGCAAGAAATTTGGGTAAATC 57.963 37.500 0.00 0.00 35.50 2.17
577 578 6.625532 ATGAGGCAAGAAATTTGGGTAAAT 57.374 33.333 0.00 0.00 38.11 1.40
578 579 6.432403 AATGAGGCAAGAAATTTGGGTAAA 57.568 33.333 0.00 0.00 0.00 2.01
579 580 6.432403 AAATGAGGCAAGAAATTTGGGTAA 57.568 33.333 0.00 0.00 0.00 2.85
580 581 5.336372 CGAAATGAGGCAAGAAATTTGGGTA 60.336 40.000 0.00 0.00 0.00 3.69
581 582 4.561326 CGAAATGAGGCAAGAAATTTGGGT 60.561 41.667 0.00 0.00 0.00 4.51
583 584 3.368843 GCGAAATGAGGCAAGAAATTTGG 59.631 43.478 0.00 0.00 0.00 3.28
585 586 4.240096 CAGCGAAATGAGGCAAGAAATTT 58.760 39.130 0.00 0.00 0.00 1.82
586 587 3.367703 CCAGCGAAATGAGGCAAGAAATT 60.368 43.478 0.00 0.00 0.00 1.82
587 588 2.165030 CCAGCGAAATGAGGCAAGAAAT 59.835 45.455 0.00 0.00 0.00 2.17
588 589 1.541147 CCAGCGAAATGAGGCAAGAAA 59.459 47.619 0.00 0.00 0.00 2.52
589 590 1.167851 CCAGCGAAATGAGGCAAGAA 58.832 50.000 0.00 0.00 0.00 2.52
590 591 0.324614 TCCAGCGAAATGAGGCAAGA 59.675 50.000 0.00 0.00 0.00 3.02
591 592 1.386533 ATCCAGCGAAATGAGGCAAG 58.613 50.000 0.00 0.00 0.00 4.01
592 593 2.708216 TATCCAGCGAAATGAGGCAA 57.292 45.000 0.00 0.00 0.00 4.52
593 594 2.936919 ATATCCAGCGAAATGAGGCA 57.063 45.000 0.00 0.00 0.00 4.75
594 595 4.095483 CCATTATATCCAGCGAAATGAGGC 59.905 45.833 0.00 0.00 30.77 4.70
595 596 4.637534 CCCATTATATCCAGCGAAATGAGG 59.362 45.833 0.00 0.00 30.77 3.86
597 598 5.241403 ACCCATTATATCCAGCGAAATGA 57.759 39.130 0.00 0.00 30.77 2.57
598 599 4.396166 GGACCCATTATATCCAGCGAAATG 59.604 45.833 0.00 0.00 32.35 2.32
599 600 4.042809 TGGACCCATTATATCCAGCGAAAT 59.957 41.667 0.00 0.00 37.60 2.17
600 601 3.392947 TGGACCCATTATATCCAGCGAAA 59.607 43.478 0.00 0.00 37.60 3.46
601 602 2.976185 TGGACCCATTATATCCAGCGAA 59.024 45.455 0.00 0.00 37.60 4.70
602 603 2.615391 TGGACCCATTATATCCAGCGA 58.385 47.619 0.00 0.00 37.60 4.93
606 607 2.615391 TCGCTGGACCCATTATATCCA 58.385 47.619 0.00 0.00 40.27 3.41
607 608 3.695830 TTCGCTGGACCCATTATATCC 57.304 47.619 0.00 0.00 0.00 2.59
608 609 4.215613 GGTTTTCGCTGGACCCATTATATC 59.784 45.833 0.00 0.00 0.00 1.63
609 610 4.142038 GGTTTTCGCTGGACCCATTATAT 58.858 43.478 0.00 0.00 0.00 0.86
610 611 3.054287 TGGTTTTCGCTGGACCCATTATA 60.054 43.478 0.00 0.00 32.39 0.98
612 613 1.074084 TGGTTTTCGCTGGACCCATTA 59.926 47.619 0.00 0.00 32.39 1.90
613 614 0.178975 TGGTTTTCGCTGGACCCATT 60.179 50.000 0.00 0.00 32.39 3.16
615 616 0.608035 GATGGTTTTCGCTGGACCCA 60.608 55.000 0.00 0.00 32.39 4.51
623 4879 1.002468 CCGGATCATGATGGTTTTCGC 60.002 52.381 14.30 0.00 0.00 4.70
636 4892 1.138069 TCTGCTATTTTCGCCGGATCA 59.862 47.619 5.05 0.00 0.00 2.92
637 4893 1.795286 CTCTGCTATTTTCGCCGGATC 59.205 52.381 5.05 0.00 0.00 3.36
644 4900 5.987953 TCCAATCAGATCTCTGCTATTTTCG 59.012 40.000 2.21 0.00 43.46 3.46
645 4901 6.073112 GCTCCAATCAGATCTCTGCTATTTTC 60.073 42.308 2.21 0.00 43.46 2.29
646 4902 5.764192 GCTCCAATCAGATCTCTGCTATTTT 59.236 40.000 2.21 0.00 43.46 1.82
650 4906 3.574749 AGCTCCAATCAGATCTCTGCTA 58.425 45.455 2.21 0.00 43.46 3.49
681 4937 5.748630 GCTCCGATGAAAAGTTTTCAAAGTT 59.251 36.000 29.44 16.47 33.16 2.66
687 4943 4.749245 TGAGCTCCGATGAAAAGTTTTC 57.251 40.909 19.44 19.44 0.00 2.29
689 4945 5.491982 ACTATGAGCTCCGATGAAAAGTTT 58.508 37.500 12.15 0.00 0.00 2.66
762 5018 2.286772 CGTCCATGTGATCGTGATCGTA 60.287 50.000 5.46 0.00 40.63 3.43
871 5128 3.972502 GTGTGGCGTTGTGACTTTATTTC 59.027 43.478 0.00 0.00 0.00 2.17
895 5152 2.582052 TGGATTCGATTATTGGGTGCC 58.418 47.619 0.00 0.00 0.00 5.01
901 5158 8.586273 GTTGTGACATTTTGGATTCGATTATTG 58.414 33.333 0.00 0.00 0.00 1.90
913 5170 1.202348 TGGCGTGTTGTGACATTTTGG 60.202 47.619 0.00 0.00 38.23 3.28
932 5189 3.953712 TGCCTGGGTATATATCGTGTG 57.046 47.619 0.00 0.00 0.00 3.82
948 5205 5.717119 ATACTACCTGAAAATCCTTGCCT 57.283 39.130 0.00 0.00 0.00 4.75
949 5206 6.262496 GGTTATACTACCTGAAAATCCTTGCC 59.738 42.308 0.00 0.00 35.23 4.52
980 5246 1.446272 CTCCTTCCGCTCGACAACC 60.446 63.158 0.00 0.00 0.00 3.77
1064 5333 2.805099 CTGTTCTTGCTTCGAGCTTTCT 59.195 45.455 8.07 0.00 42.97 2.52
1317 5592 1.073216 CGTAGGAGAGCTTGTGCACG 61.073 60.000 13.13 0.00 42.74 5.34
1590 5865 1.565067 TCAGCTGCTTCATCCTCTCA 58.435 50.000 9.47 0.00 0.00 3.27
1761 6036 3.389329 ACTTCTTCTTCTCAAGGTGCTCA 59.611 43.478 0.00 0.00 0.00 4.26
1837 6901 2.027625 GTCCGGCGGTGTCTTCTTG 61.028 63.158 27.32 0.00 0.00 3.02
1912 6976 8.251026 GGACCCGAAATTAAAGATGAAATTCTT 58.749 33.333 0.00 0.00 37.56 2.52
1932 6996 1.069204 CATAGACAGACCATGGACCCG 59.931 57.143 21.47 9.25 0.00 5.28
2066 7132 2.702592 ATAATTGGACCGAGCGGAAA 57.297 45.000 16.83 7.34 38.96 3.13
2158 7322 7.176165 CCATTTCAGTCTGCATGTATTCCATAT 59.824 37.037 0.00 0.00 30.71 1.78
2173 7337 6.016276 GTGTATTTGTTCACCCATTTCAGTCT 60.016 38.462 0.00 0.00 0.00 3.24
2316 7485 0.690762 ACGGCTGTCTGTTACCCAAT 59.309 50.000 0.00 0.00 0.00 3.16
2572 7747 4.749598 CCAATTTGCCTTGTTAACACCTTC 59.250 41.667 8.07 0.00 0.00 3.46
2620 7795 3.738830 ACGGACTGTTACTTGCTACAA 57.261 42.857 0.00 0.00 0.00 2.41
2671 7847 5.806654 ACACCCTTGTTTGCTATGATTTT 57.193 34.783 0.00 0.00 28.43 1.82
2695 7871 6.687081 TTTACACGATTTCAAAACCTCAGT 57.313 33.333 0.00 0.00 0.00 3.41
3000 8176 0.693049 CAGGTCCTACATATGCCCCC 59.307 60.000 1.58 0.00 0.00 5.40
3001 8177 1.729586 TCAGGTCCTACATATGCCCC 58.270 55.000 1.58 0.00 0.00 5.80
3017 8193 1.878522 CGGTTCCGGCGAAGATCAG 60.879 63.158 9.30 0.00 0.00 2.90
3034 8210 4.083271 TCCAGCGTAATAGATGATGTCTCG 60.083 45.833 0.00 0.00 38.42 4.04
3144 8320 3.181482 GCTGAGGTCATCTTCTTCGATGA 60.181 47.826 0.00 0.00 45.46 2.92
3259 8435 0.395311 TCTCGTAGCCCTGGACGATT 60.395 55.000 9.21 0.00 46.17 3.34
3393 8569 3.207547 CTCACGTCCACGCCTGTCA 62.208 63.158 0.00 0.00 44.43 3.58
3414 8590 2.612221 GGGAGGAGTTGGTAGTCGTTTG 60.612 54.545 0.00 0.00 0.00 2.93
3673 8850 9.534565 GATGAGATGCTTCGCCTTTATAATATA 57.465 33.333 0.96 0.00 0.00 0.86
3685 8862 0.528466 TCACCGATGAGATGCTTCGC 60.528 55.000 0.00 0.00 41.34 4.70
3687 8864 1.576356 GGTCACCGATGAGATGCTTC 58.424 55.000 0.00 0.00 34.75 3.86
3716 8893 6.380995 GTGCTCATATTGTTGATGTTGTTGA 58.619 36.000 0.00 0.00 0.00 3.18
3901 9082 6.865726 GGTAAATTTTGTGTGTGTATGCATCA 59.134 34.615 0.19 0.00 0.00 3.07
4017 9199 4.666253 AAGTGCATGGCCGGTGCT 62.666 61.111 26.97 10.72 42.92 4.40
4025 9207 2.359981 AGGATCATGGAAGTGCATGG 57.640 50.000 12.19 0.00 0.00 3.66
4091 9273 7.808381 AGTCGAACATCTAAATACATGGTATCG 59.192 37.037 0.00 0.00 0.00 2.92
4218 9404 1.138568 CCCCTCTCTCCAGCATCATT 58.861 55.000 0.00 0.00 0.00 2.57
4338 9524 8.230486 CGCACTAAGTTATGTCAGAAGATTTTT 58.770 33.333 0.00 0.00 0.00 1.94
4360 9546 2.287547 TGGCAGAGAAATTTTGACGCAC 60.288 45.455 0.00 0.00 0.00 5.34
4385 9571 4.102367 AGTGCAATAAATCTCCTCCTCTCC 59.898 45.833 0.00 0.00 0.00 3.71
4396 9582 5.698089 TCTCGATGATGGAGTGCAATAAATC 59.302 40.000 4.38 0.00 33.26 2.17
4491 9677 2.086869 CGTTGGAGATGCCTTGTCATT 58.913 47.619 0.00 0.00 37.63 2.57
4602 9788 7.947890 TCAATATAATATGGACCACCCTTTTCC 59.052 37.037 0.00 0.00 35.38 3.13
4604 9790 9.897040 ATTCAATATAATATGGACCACCCTTTT 57.103 29.630 0.00 0.00 35.38 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.