Multiple sequence alignment - TraesCS5D01G323400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G323400 chr5D 100.000 3144 0 0 1 3144 415612363 415615506 0.000000e+00 5806.0
1 TraesCS5D01G323400 chr5D 100.000 2686 0 0 3566 6251 415615928 415618613 0.000000e+00 4961.0
2 TraesCS5D01G323400 chr5D 95.192 104 5 0 2655 2758 228447058 228446955 1.390000e-36 165.0
3 TraesCS5D01G323400 chr5D 92.727 110 7 1 2647 2755 476942354 476942245 2.330000e-34 158.0
4 TraesCS5D01G323400 chr5D 75.649 308 52 15 5964 6251 324142538 324142842 1.410000e-26 132.0
5 TraesCS5D01G323400 chr5A 92.195 1909 95 27 3566 5449 528113079 528114958 0.000000e+00 2651.0
6 TraesCS5D01G323400 chr5A 89.261 1285 57 28 412 1656 528110302 528111545 0.000000e+00 1533.0
7 TraesCS5D01G323400 chr5A 93.607 657 32 3 2082 2735 528111893 528112542 0.000000e+00 972.0
8 TraesCS5D01G323400 chr5A 87.778 810 67 14 5450 6251 528114989 528115774 0.000000e+00 918.0
9 TraesCS5D01G323400 chr5A 91.126 293 23 3 2853 3144 528112759 528113049 1.630000e-105 394.0
10 TraesCS5D01G323400 chr5A 89.189 185 11 5 1910 2085 528111573 528111757 8.160000e-54 222.0
11 TraesCS5D01G323400 chr5A 86.325 117 15 1 6135 6251 421869345 421869460 6.580000e-25 126.0
12 TraesCS5D01G323400 chr5A 86.111 108 15 0 303 410 528109838 528109945 3.960000e-22 117.0
13 TraesCS5D01G323400 chr5B 93.886 1521 72 13 3942 5449 501957182 501958694 0.000000e+00 2274.0
14 TraesCS5D01G323400 chr5B 88.926 1815 114 45 257 2027 501953635 501955406 0.000000e+00 2158.0
15 TraesCS5D01G323400 chr5B 92.931 580 30 4 2082 2657 501955576 501956148 0.000000e+00 833.0
16 TraesCS5D01G323400 chr5B 93.398 515 29 2 5451 5961 501958851 501959364 0.000000e+00 758.0
17 TraesCS5D01G323400 chr5B 93.003 343 19 4 3566 3905 501956614 501956954 4.350000e-136 496.0
18 TraesCS5D01G323400 chr5B 90.411 292 26 2 2853 3144 501956295 501956584 3.540000e-102 383.0
19 TraesCS5D01G323400 chr5B 87.861 173 20 1 6079 6251 501959497 501959668 1.060000e-47 202.0
20 TraesCS5D01G323400 chr5B 94.393 107 4 1 2750 2854 501956146 501956252 5.010000e-36 163.0
21 TraesCS5D01G323400 chr5B 91.964 112 8 1 2645 2755 681819305 681819416 8.390000e-34 156.0
22 TraesCS5D01G323400 chr7B 90.400 125 9 3 2654 2777 113136396 113136274 1.800000e-35 161.0
23 TraesCS5D01G323400 chr7B 88.571 105 11 1 6147 6251 396038793 396038690 6.580000e-25 126.0
24 TraesCS5D01G323400 chr1D 94.340 106 5 1 2654 2758 135931048 135930943 1.800000e-35 161.0
25 TraesCS5D01G323400 chr1D 86.325 117 15 1 6135 6251 336347066 336347181 6.580000e-25 126.0
26 TraesCS5D01G323400 chr6B 92.727 110 7 1 2652 2760 710231543 710231652 2.330000e-34 158.0
27 TraesCS5D01G323400 chr6B 79.439 107 22 0 55 161 68012937 68012831 6.720000e-10 76.8
28 TraesCS5D01G323400 chr2D 93.458 107 5 2 2655 2761 636776350 636776246 2.330000e-34 158.0
29 TraesCS5D01G323400 chr4B 89.600 125 9 4 2654 2777 403048334 403048213 8.390000e-34 156.0
30 TraesCS5D01G323400 chr7D 90.598 117 9 2 6135 6251 542978138 542978024 3.020000e-33 154.0
31 TraesCS5D01G323400 chr7D 77.344 256 44 10 5996 6245 626924710 626924957 8.450000e-29 139.0
32 TraesCS5D01G323400 chr7A 88.034 117 12 2 6135 6251 449639520 449639406 3.040000e-28 137.0
33 TraesCS5D01G323400 chr4A 78.855 227 27 10 6008 6215 459673092 459673316 3.930000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G323400 chr5D 415612363 415618613 6250 False 5383.500000 5806 100.000000 1 6251 2 chr5D.!!$F2 6250
1 TraesCS5D01G323400 chr5A 528109838 528115774 5936 False 972.428571 2651 89.895286 303 6251 7 chr5A.!!$F2 5948
2 TraesCS5D01G323400 chr5B 501953635 501959668 6033 False 908.375000 2274 91.851125 257 6251 8 chr5B.!!$F2 5994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.034960 ACTCAGTCTGGCTCGCTAGA 60.035 55.000 0.50 0.5 0.00 2.43 F
199 200 0.035739 TCCGTCTAACCAACAAGGCC 59.964 55.000 0.00 0.0 43.14 5.19 F
1177 1551 0.107081 GGAGAGTCCGAGAGATCCGA 59.893 60.000 0.00 0.0 0.00 4.55 F
1720 2136 0.100146 GGGAACTACGGTAGAGTGCG 59.900 60.000 21.39 0.0 0.00 5.34 F
1725 2141 0.800631 CTACGGTAGAGTGCGTGTGA 59.199 55.000 9.60 0.0 0.00 3.58 F
2016 2442 0.814457 AGCTGACCTTGCGAGACTAG 59.186 55.000 1.22 0.0 35.28 2.57 F
3081 3765 1.670811 CACACTGGAGCAGACGTTTTT 59.329 47.619 0.00 0.0 35.18 1.94 F
4545 5423 1.672881 GTAGCCATGCAACAGATGGAC 59.327 52.381 7.48 0.0 42.81 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1564 0.033405 CTCTACGTCCTTCCTCCCCA 60.033 60.000 0.00 0.0 0.00 4.96 R
1700 2115 0.459078 GCACTCTACCGTAGTTCCCC 59.541 60.000 5.46 0.0 0.00 4.81 R
2280 2856 2.015736 AGCTTTATCAGACAGCACCG 57.984 50.000 0.00 0.0 35.88 4.94 R
3081 3765 2.103601 GGTAACGGGGCAAATAGCTCTA 59.896 50.000 0.00 0.0 45.61 2.43 R
3094 3778 2.567985 AGACACACTTTTGGTAACGGG 58.432 47.619 0.00 0.0 42.51 5.28 R
3824 4509 2.309613 ACATTTTGCTCCAGCTTGACA 58.690 42.857 0.00 0.0 42.66 3.58 R
4572 5450 1.006832 CCTTTGGTACGGAATGAGCG 58.993 55.000 0.00 0.0 0.00 5.03 R
5611 6666 0.533755 GAGAATCAGGGGGTCGCATG 60.534 60.000 0.00 0.0 33.17 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.942872 GGAGAAGAAACCATGTACATGTTG 58.057 41.667 29.25 19.44 37.11 3.33
24 25 5.473504 GGAGAAGAAACCATGTACATGTTGT 59.526 40.000 29.25 20.02 37.11 3.32
25 26 6.317789 AGAAGAAACCATGTACATGTTGTG 57.682 37.500 29.25 18.50 37.11 3.33
26 27 5.827797 AGAAGAAACCATGTACATGTTGTGT 59.172 36.000 29.25 18.43 44.95 3.72
27 28 6.995686 AGAAGAAACCATGTACATGTTGTGTA 59.004 34.615 29.25 0.00 42.29 2.90
28 29 6.801539 AGAAACCATGTACATGTTGTGTAG 57.198 37.500 29.25 16.94 43.70 2.74
29 30 6.296026 AGAAACCATGTACATGTTGTGTAGT 58.704 36.000 29.25 17.51 43.70 2.73
30 31 7.446769 AGAAACCATGTACATGTTGTGTAGTA 58.553 34.615 29.25 0.00 43.70 1.82
31 32 7.386848 AGAAACCATGTACATGTTGTGTAGTAC 59.613 37.037 29.25 16.52 43.70 2.73
32 33 6.354794 ACCATGTACATGTTGTGTAGTACT 57.645 37.500 29.25 0.00 43.70 2.73
33 34 6.395629 ACCATGTACATGTTGTGTAGTACTC 58.604 40.000 29.25 0.00 43.70 2.59
34 35 5.515270 CCATGTACATGTTGTGTAGTACTCG 59.485 44.000 29.25 9.27 43.70 4.18
35 36 4.478699 TGTACATGTTGTGTAGTACTCGC 58.521 43.478 2.30 0.00 43.70 5.03
36 37 3.653539 ACATGTTGTGTAGTACTCGCA 57.346 42.857 0.00 1.40 39.91 5.10
37 38 4.188247 ACATGTTGTGTAGTACTCGCAT 57.812 40.909 0.00 4.52 39.91 4.73
38 39 4.566004 ACATGTTGTGTAGTACTCGCATT 58.434 39.130 0.00 0.00 39.91 3.56
39 40 4.388773 ACATGTTGTGTAGTACTCGCATTG 59.611 41.667 0.00 5.78 39.91 2.82
40 41 3.985008 TGTTGTGTAGTACTCGCATTGT 58.015 40.909 0.00 0.00 0.00 2.71
41 42 3.985279 TGTTGTGTAGTACTCGCATTGTC 59.015 43.478 0.00 0.00 0.00 3.18
42 43 4.235360 GTTGTGTAGTACTCGCATTGTCT 58.765 43.478 0.00 0.00 0.00 3.41
43 44 4.092771 TGTGTAGTACTCGCATTGTCTC 57.907 45.455 0.00 0.00 0.00 3.36
44 45 3.099362 GTGTAGTACTCGCATTGTCTCG 58.901 50.000 0.00 0.00 0.00 4.04
45 46 2.745821 TGTAGTACTCGCATTGTCTCGT 59.254 45.455 0.00 0.00 0.00 4.18
46 47 2.264109 AGTACTCGCATTGTCTCGTG 57.736 50.000 0.00 0.00 0.00 4.35
47 48 0.640768 GTACTCGCATTGTCTCGTGC 59.359 55.000 0.00 0.00 37.97 5.34
48 49 0.242555 TACTCGCATTGTCTCGTGCA 59.757 50.000 0.00 0.00 41.32 4.57
49 50 0.599991 ACTCGCATTGTCTCGTGCAA 60.600 50.000 0.00 0.00 41.32 4.08
50 51 0.179240 CTCGCATTGTCTCGTGCAAC 60.179 55.000 0.00 0.00 41.32 4.17
51 52 1.154413 CGCATTGTCTCGTGCAACC 60.154 57.895 0.00 0.00 41.32 3.77
52 53 1.154413 GCATTGTCTCGTGCAACCG 60.154 57.895 0.00 0.00 40.94 4.44
53 54 1.565156 GCATTGTCTCGTGCAACCGA 61.565 55.000 0.00 0.00 40.94 4.69
54 55 0.865111 CATTGTCTCGTGCAACCGAA 59.135 50.000 0.87 0.00 36.24 4.30
55 56 0.865769 ATTGTCTCGTGCAACCGAAC 59.134 50.000 0.87 3.77 36.24 3.95
56 57 1.155424 TTGTCTCGTGCAACCGAACC 61.155 55.000 0.87 0.00 36.24 3.62
57 58 2.029964 TCTCGTGCAACCGAACCC 59.970 61.111 0.87 0.00 36.24 4.11
58 59 2.280524 CTCGTGCAACCGAACCCA 60.281 61.111 0.87 0.00 36.24 4.51
59 60 1.671054 CTCGTGCAACCGAACCCAT 60.671 57.895 0.87 0.00 36.24 4.00
60 61 1.635663 CTCGTGCAACCGAACCCATC 61.636 60.000 0.87 0.00 36.24 3.51
61 62 2.686816 CGTGCAACCGAACCCATCC 61.687 63.158 0.00 0.00 0.00 3.51
62 63 1.602323 GTGCAACCGAACCCATCCA 60.602 57.895 0.00 0.00 0.00 3.41
63 64 0.965363 GTGCAACCGAACCCATCCAT 60.965 55.000 0.00 0.00 0.00 3.41
64 65 0.964860 TGCAACCGAACCCATCCATG 60.965 55.000 0.00 0.00 0.00 3.66
65 66 1.809207 CAACCGAACCCATCCATGC 59.191 57.895 0.00 0.00 0.00 4.06
66 67 0.964860 CAACCGAACCCATCCATGCA 60.965 55.000 0.00 0.00 0.00 3.96
67 68 0.965363 AACCGAACCCATCCATGCAC 60.965 55.000 0.00 0.00 0.00 4.57
68 69 2.120909 CCGAACCCATCCATGCACC 61.121 63.158 0.00 0.00 0.00 5.01
69 70 2.120909 CGAACCCATCCATGCACCC 61.121 63.158 0.00 0.00 0.00 4.61
70 71 1.758122 GAACCCATCCATGCACCCC 60.758 63.158 0.00 0.00 0.00 4.95
71 72 3.315952 AACCCATCCATGCACCCCC 62.316 63.158 0.00 0.00 0.00 5.40
72 73 4.900704 CCCATCCATGCACCCCCG 62.901 72.222 0.00 0.00 0.00 5.73
73 74 3.807839 CCATCCATGCACCCCCGA 61.808 66.667 0.00 0.00 0.00 5.14
74 75 2.517414 CATCCATGCACCCCCGAT 59.483 61.111 0.00 0.00 0.00 4.18
75 76 1.152694 CATCCATGCACCCCCGATT 60.153 57.895 0.00 0.00 0.00 3.34
76 77 0.756442 CATCCATGCACCCCCGATTT 60.756 55.000 0.00 0.00 0.00 2.17
77 78 0.756442 ATCCATGCACCCCCGATTTG 60.756 55.000 0.00 0.00 0.00 2.32
78 79 2.425569 CCATGCACCCCCGATTTGG 61.426 63.158 0.00 0.00 37.55 3.28
79 80 2.759560 ATGCACCCCCGATTTGGC 60.760 61.111 0.00 0.00 35.87 4.52
80 81 3.301222 ATGCACCCCCGATTTGGCT 62.301 57.895 0.00 0.00 35.87 4.75
81 82 2.679996 GCACCCCCGATTTGGCTT 60.680 61.111 0.00 0.00 35.87 4.35
82 83 2.710902 GCACCCCCGATTTGGCTTC 61.711 63.158 0.00 0.00 35.87 3.86
83 84 1.304052 CACCCCCGATTTGGCTTCA 60.304 57.895 0.00 0.00 35.87 3.02
84 85 1.304134 ACCCCCGATTTGGCTTCAC 60.304 57.895 0.00 0.00 35.87 3.18
85 86 1.000896 CCCCCGATTTGGCTTCACT 60.001 57.895 0.00 0.00 35.87 3.41
86 87 1.032114 CCCCCGATTTGGCTTCACTC 61.032 60.000 0.00 0.00 35.87 3.51
87 88 0.322456 CCCCGATTTGGCTTCACTCA 60.322 55.000 0.00 0.00 35.87 3.41
88 89 1.089920 CCCGATTTGGCTTCACTCAG 58.910 55.000 0.00 0.00 35.87 3.35
89 90 1.611673 CCCGATTTGGCTTCACTCAGT 60.612 52.381 0.00 0.00 35.87 3.41
90 91 1.734465 CCGATTTGGCTTCACTCAGTC 59.266 52.381 0.00 0.00 0.00 3.51
91 92 2.613977 CCGATTTGGCTTCACTCAGTCT 60.614 50.000 0.00 0.00 0.00 3.24
92 93 2.414481 CGATTTGGCTTCACTCAGTCTG 59.586 50.000 0.00 0.00 0.00 3.51
93 94 2.260844 TTTGGCTTCACTCAGTCTGG 57.739 50.000 0.00 0.00 0.00 3.86
94 95 0.250467 TTGGCTTCACTCAGTCTGGC 60.250 55.000 0.00 0.00 0.00 4.85
95 96 1.123861 TGGCTTCACTCAGTCTGGCT 61.124 55.000 0.00 0.00 0.00 4.75
96 97 0.390998 GGCTTCACTCAGTCTGGCTC 60.391 60.000 0.00 0.00 0.00 4.70
97 98 0.735632 GCTTCACTCAGTCTGGCTCG 60.736 60.000 0.00 0.00 0.00 5.03
98 99 0.735632 CTTCACTCAGTCTGGCTCGC 60.736 60.000 0.00 0.00 0.00 5.03
99 100 1.181741 TTCACTCAGTCTGGCTCGCT 61.182 55.000 0.00 0.00 0.00 4.93
100 101 0.322546 TCACTCAGTCTGGCTCGCTA 60.323 55.000 0.00 0.00 0.00 4.26
101 102 0.100325 CACTCAGTCTGGCTCGCTAG 59.900 60.000 0.00 0.00 0.00 3.42
102 103 0.034960 ACTCAGTCTGGCTCGCTAGA 60.035 55.000 0.50 0.50 0.00 2.43
103 104 1.098869 CTCAGTCTGGCTCGCTAGAA 58.901 55.000 6.54 0.00 35.37 2.10
104 105 1.474478 CTCAGTCTGGCTCGCTAGAAA 59.526 52.381 6.54 0.00 35.37 2.52
105 106 1.202582 TCAGTCTGGCTCGCTAGAAAC 59.797 52.381 6.54 0.00 35.37 2.78
106 107 0.171455 AGTCTGGCTCGCTAGAAACG 59.829 55.000 6.54 0.00 35.37 3.60
107 108 0.802607 GTCTGGCTCGCTAGAAACGG 60.803 60.000 6.54 0.00 35.37 4.44
108 109 1.215647 CTGGCTCGCTAGAAACGGT 59.784 57.895 0.00 0.00 0.00 4.83
109 110 0.802607 CTGGCTCGCTAGAAACGGTC 60.803 60.000 0.00 0.00 0.00 4.79
110 111 1.872679 GGCTCGCTAGAAACGGTCG 60.873 63.158 0.00 0.00 0.00 4.79
111 112 1.136147 GCTCGCTAGAAACGGTCGA 59.864 57.895 0.00 0.00 0.00 4.20
112 113 0.248539 GCTCGCTAGAAACGGTCGAT 60.249 55.000 0.00 0.00 0.00 3.59
113 114 1.798079 GCTCGCTAGAAACGGTCGATT 60.798 52.381 0.00 0.00 0.00 3.34
114 115 2.527100 CTCGCTAGAAACGGTCGATTT 58.473 47.619 0.00 0.00 0.00 2.17
115 116 2.256174 TCGCTAGAAACGGTCGATTTG 58.744 47.619 0.00 0.00 0.00 2.32
116 117 1.323534 CGCTAGAAACGGTCGATTTGG 59.676 52.381 0.00 0.00 0.00 3.28
117 118 1.062148 GCTAGAAACGGTCGATTTGGC 59.938 52.381 0.00 0.00 0.00 4.52
118 119 1.664151 CTAGAAACGGTCGATTTGGCC 59.336 52.381 0.00 0.00 0.00 5.36
122 123 2.782615 CGGTCGATTTGGCCGTTC 59.217 61.111 8.86 0.00 40.53 3.95
123 124 2.746803 CGGTCGATTTGGCCGTTCC 61.747 63.158 8.86 0.00 40.53 3.62
124 125 1.376812 GGTCGATTTGGCCGTTCCT 60.377 57.895 0.00 0.00 35.26 3.36
125 126 0.958876 GGTCGATTTGGCCGTTCCTT 60.959 55.000 0.00 0.00 35.26 3.36
126 127 0.879090 GTCGATTTGGCCGTTCCTTT 59.121 50.000 0.00 0.00 35.26 3.11
127 128 0.878416 TCGATTTGGCCGTTCCTTTG 59.122 50.000 0.00 0.00 35.26 2.77
128 129 0.109319 CGATTTGGCCGTTCCTTTGG 60.109 55.000 0.00 0.00 35.26 3.28
129 130 1.253100 GATTTGGCCGTTCCTTTGGA 58.747 50.000 0.00 0.00 35.26 3.53
130 131 1.824852 GATTTGGCCGTTCCTTTGGAT 59.175 47.619 0.00 0.00 35.26 3.41
131 132 2.588464 TTTGGCCGTTCCTTTGGATA 57.412 45.000 0.00 0.00 35.26 2.59
132 133 2.818751 TTGGCCGTTCCTTTGGATAT 57.181 45.000 0.00 0.00 35.26 1.63
133 134 3.935818 TTGGCCGTTCCTTTGGATATA 57.064 42.857 0.00 0.00 35.26 0.86
134 135 3.485463 TGGCCGTTCCTTTGGATATAG 57.515 47.619 0.00 0.00 35.26 1.31
135 136 2.105821 TGGCCGTTCCTTTGGATATAGG 59.894 50.000 0.00 0.00 35.26 2.57
136 137 2.152016 GCCGTTCCTTTGGATATAGGC 58.848 52.381 0.00 0.00 35.00 3.93
137 138 2.779506 CCGTTCCTTTGGATATAGGCC 58.220 52.381 0.00 0.00 0.00 5.19
138 139 2.552373 CCGTTCCTTTGGATATAGGCCC 60.552 54.545 0.00 0.00 0.00 5.80
139 140 2.105821 CGTTCCTTTGGATATAGGCCCA 59.894 50.000 0.00 0.00 0.00 5.36
140 141 3.756117 GTTCCTTTGGATATAGGCCCAG 58.244 50.000 0.00 0.00 33.43 4.45
141 142 3.360740 TCCTTTGGATATAGGCCCAGA 57.639 47.619 0.00 0.00 33.43 3.86
142 143 3.251484 TCCTTTGGATATAGGCCCAGAG 58.749 50.000 0.00 0.00 35.22 3.35
143 144 2.307098 CCTTTGGATATAGGCCCAGAGG 59.693 54.545 0.00 11.35 44.89 3.69
144 145 2.815357 TTGGATATAGGCCCAGAGGT 57.185 50.000 0.00 0.00 33.43 3.85
145 146 2.815357 TGGATATAGGCCCAGAGGTT 57.185 50.000 0.00 0.00 34.57 3.50
146 147 2.338809 TGGATATAGGCCCAGAGGTTG 58.661 52.381 0.00 0.00 34.57 3.77
147 148 2.339769 GGATATAGGCCCAGAGGTTGT 58.660 52.381 0.00 0.00 34.57 3.32
148 149 2.711547 GGATATAGGCCCAGAGGTTGTT 59.288 50.000 0.00 0.00 34.57 2.83
149 150 3.138468 GGATATAGGCCCAGAGGTTGTTT 59.862 47.826 0.00 0.00 34.57 2.83
150 151 4.349930 GGATATAGGCCCAGAGGTTGTTTA 59.650 45.833 0.00 0.00 34.57 2.01
151 152 5.163131 GGATATAGGCCCAGAGGTTGTTTAA 60.163 44.000 0.00 0.00 34.57 1.52
152 153 2.586648 AGGCCCAGAGGTTGTTTAAG 57.413 50.000 0.00 0.00 34.57 1.85
153 154 1.780919 AGGCCCAGAGGTTGTTTAAGT 59.219 47.619 0.00 0.00 34.57 2.24
154 155 2.177016 AGGCCCAGAGGTTGTTTAAGTT 59.823 45.455 0.00 0.00 34.57 2.66
155 156 2.963101 GGCCCAGAGGTTGTTTAAGTTT 59.037 45.455 0.00 0.00 34.57 2.66
156 157 3.005472 GGCCCAGAGGTTGTTTAAGTTTC 59.995 47.826 0.00 0.00 34.57 2.78
157 158 3.304458 GCCCAGAGGTTGTTTAAGTTTCG 60.304 47.826 0.00 0.00 34.57 3.46
158 159 3.881089 CCCAGAGGTTGTTTAAGTTTCGT 59.119 43.478 0.00 0.00 0.00 3.85
159 160 4.261031 CCCAGAGGTTGTTTAAGTTTCGTG 60.261 45.833 0.00 0.00 0.00 4.35
160 161 4.279659 CAGAGGTTGTTTAAGTTTCGTGC 58.720 43.478 0.00 0.00 0.00 5.34
161 162 3.314357 AGAGGTTGTTTAAGTTTCGTGCC 59.686 43.478 0.00 0.00 0.00 5.01
162 163 2.032426 AGGTTGTTTAAGTTTCGTGCCG 59.968 45.455 0.00 0.00 0.00 5.69
163 164 2.377880 GTTGTTTAAGTTTCGTGCCGG 58.622 47.619 0.00 0.00 0.00 6.13
164 165 0.308376 TGTTTAAGTTTCGTGCCGGC 59.692 50.000 22.73 22.73 0.00 6.13
165 166 0.386352 GTTTAAGTTTCGTGCCGGCC 60.386 55.000 26.77 14.70 0.00 6.13
166 167 0.818445 TTTAAGTTTCGTGCCGGCCA 60.818 50.000 26.77 9.53 0.00 5.36
167 168 0.818445 TTAAGTTTCGTGCCGGCCAA 60.818 50.000 26.77 11.52 0.00 4.52
168 169 1.508808 TAAGTTTCGTGCCGGCCAAC 61.509 55.000 26.77 20.28 0.00 3.77
169 170 3.284449 GTTTCGTGCCGGCCAACT 61.284 61.111 26.77 0.00 0.00 3.16
170 171 2.517402 TTTCGTGCCGGCCAACTT 60.517 55.556 26.77 0.00 0.00 2.66
171 172 2.122167 TTTCGTGCCGGCCAACTTT 61.122 52.632 26.77 0.00 0.00 2.66
172 173 1.668101 TTTCGTGCCGGCCAACTTTT 61.668 50.000 26.77 0.00 0.00 2.27
173 174 2.050442 CGTGCCGGCCAACTTTTC 60.050 61.111 26.77 3.10 0.00 2.29
174 175 2.551912 CGTGCCGGCCAACTTTTCT 61.552 57.895 26.77 0.00 0.00 2.52
175 176 1.007387 GTGCCGGCCAACTTTTCTG 60.007 57.895 26.77 0.00 0.00 3.02
176 177 2.049156 GCCGGCCAACTTTTCTGC 60.049 61.111 18.11 0.00 0.00 4.26
177 178 2.564721 GCCGGCCAACTTTTCTGCT 61.565 57.895 18.11 0.00 0.00 4.24
178 179 1.286880 CCGGCCAACTTTTCTGCTG 59.713 57.895 2.24 0.00 0.00 4.41
179 180 1.172180 CCGGCCAACTTTTCTGCTGA 61.172 55.000 2.24 0.00 31.72 4.26
180 181 0.883833 CGGCCAACTTTTCTGCTGAT 59.116 50.000 2.24 0.00 31.72 2.90
181 182 1.135575 CGGCCAACTTTTCTGCTGATC 60.136 52.381 2.24 0.00 31.72 2.92
182 183 1.203287 GGCCAACTTTTCTGCTGATCC 59.797 52.381 0.00 0.00 0.00 3.36
183 184 1.135575 GCCAACTTTTCTGCTGATCCG 60.136 52.381 0.00 0.00 0.00 4.18
184 185 2.154462 CCAACTTTTCTGCTGATCCGT 58.846 47.619 0.00 0.00 0.00 4.69
185 186 2.160417 CCAACTTTTCTGCTGATCCGTC 59.840 50.000 0.00 0.00 0.00 4.79
186 187 3.070018 CAACTTTTCTGCTGATCCGTCT 58.930 45.455 0.00 0.00 0.00 4.18
187 188 4.245660 CAACTTTTCTGCTGATCCGTCTA 58.754 43.478 0.00 0.00 0.00 2.59
188 189 4.537135 ACTTTTCTGCTGATCCGTCTAA 57.463 40.909 0.00 0.00 0.00 2.10
189 190 4.246458 ACTTTTCTGCTGATCCGTCTAAC 58.754 43.478 0.00 0.00 0.00 2.34
190 191 2.961526 TTCTGCTGATCCGTCTAACC 57.038 50.000 0.00 0.00 0.00 2.85
191 192 1.847328 TCTGCTGATCCGTCTAACCA 58.153 50.000 0.00 0.00 0.00 3.67
192 193 2.176045 TCTGCTGATCCGTCTAACCAA 58.824 47.619 0.00 0.00 0.00 3.67
193 194 2.094182 TCTGCTGATCCGTCTAACCAAC 60.094 50.000 0.00 0.00 0.00 3.77
194 195 1.621317 TGCTGATCCGTCTAACCAACA 59.379 47.619 0.00 0.00 0.00 3.33
195 196 2.037902 TGCTGATCCGTCTAACCAACAA 59.962 45.455 0.00 0.00 0.00 2.83
196 197 2.673368 GCTGATCCGTCTAACCAACAAG 59.327 50.000 0.00 0.00 0.00 3.16
197 198 3.262420 CTGATCCGTCTAACCAACAAGG 58.738 50.000 0.00 0.00 45.67 3.61
198 199 2.007608 GATCCGTCTAACCAACAAGGC 58.992 52.381 0.00 0.00 43.14 4.35
199 200 0.035739 TCCGTCTAACCAACAAGGCC 59.964 55.000 0.00 0.00 43.14 5.19
200 201 0.250553 CCGTCTAACCAACAAGGCCA 60.251 55.000 5.01 0.00 43.14 5.36
201 202 1.600023 CGTCTAACCAACAAGGCCAA 58.400 50.000 5.01 0.00 43.14 4.52
202 203 1.950909 CGTCTAACCAACAAGGCCAAA 59.049 47.619 5.01 0.00 43.14 3.28
203 204 2.359531 CGTCTAACCAACAAGGCCAAAA 59.640 45.455 5.01 0.00 43.14 2.44
204 205 3.181485 CGTCTAACCAACAAGGCCAAAAA 60.181 43.478 5.01 0.00 43.14 1.94
205 206 4.116961 GTCTAACCAACAAGGCCAAAAAC 58.883 43.478 5.01 0.00 43.14 2.43
206 207 3.769844 TCTAACCAACAAGGCCAAAAACA 59.230 39.130 5.01 0.00 43.14 2.83
207 208 3.643199 AACCAACAAGGCCAAAAACAT 57.357 38.095 5.01 0.00 43.14 2.71
208 209 3.192541 ACCAACAAGGCCAAAAACATC 57.807 42.857 5.01 0.00 43.14 3.06
209 210 2.771372 ACCAACAAGGCCAAAAACATCT 59.229 40.909 5.01 0.00 43.14 2.90
210 211 3.181466 ACCAACAAGGCCAAAAACATCTC 60.181 43.478 5.01 0.00 43.14 2.75
211 212 3.392882 CAACAAGGCCAAAAACATCTCC 58.607 45.455 5.01 0.00 0.00 3.71
212 213 1.970640 ACAAGGCCAAAAACATCTCCC 59.029 47.619 5.01 0.00 0.00 4.30
213 214 1.067635 CAAGGCCAAAAACATCTCCCG 60.068 52.381 5.01 0.00 0.00 5.14
214 215 1.215382 GGCCAAAAACATCTCCCGC 59.785 57.895 0.00 0.00 0.00 6.13
215 216 1.154035 GCCAAAAACATCTCCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
216 217 1.506262 CCAAAAACATCTCCCGCGG 59.494 57.895 21.04 21.04 0.00 6.46
217 218 1.506262 CAAAAACATCTCCCGCGGG 59.494 57.895 39.13 39.13 0.00 6.13
218 219 1.074248 AAAAACATCTCCCGCGGGT 59.926 52.632 41.57 22.72 36.47 5.28
219 220 0.538746 AAAAACATCTCCCGCGGGTT 60.539 50.000 41.57 26.50 36.47 4.11
220 221 0.538746 AAAACATCTCCCGCGGGTTT 60.539 50.000 41.57 30.35 36.47 3.27
221 222 1.241315 AAACATCTCCCGCGGGTTTG 61.241 55.000 41.57 34.29 36.47 2.93
222 223 3.508840 CATCTCCCGCGGGTTTGC 61.509 66.667 41.57 0.00 36.47 3.68
223 224 4.796495 ATCTCCCGCGGGTTTGCC 62.796 66.667 41.57 0.00 36.47 4.52
225 226 4.090588 CTCCCGCGGGTTTGCCTA 62.091 66.667 41.57 21.40 36.47 3.93
226 227 4.090588 TCCCGCGGGTTTGCCTAG 62.091 66.667 41.57 15.10 36.47 3.02
231 232 4.041762 CGGGTTTGCCTAGGCCCA 62.042 66.667 30.81 15.05 41.11 5.36
232 233 2.443324 GGGTTTGCCTAGGCCCAA 59.557 61.111 30.81 20.15 40.76 4.12
233 234 1.001631 GGGTTTGCCTAGGCCCAAT 59.998 57.895 30.81 0.00 40.76 3.16
234 235 1.329913 GGGTTTGCCTAGGCCCAATG 61.330 60.000 30.81 0.00 40.76 2.82
235 236 1.517361 GTTTGCCTAGGCCCAATGC 59.483 57.895 30.81 11.34 41.09 3.56
236 237 1.078166 TTTGCCTAGGCCCAATGCA 59.922 52.632 30.81 7.52 43.89 3.96
237 238 0.543883 TTTGCCTAGGCCCAATGCAA 60.544 50.000 30.81 13.66 43.89 4.08
238 239 0.543883 TTGCCTAGGCCCAATGCAAA 60.544 50.000 30.81 12.89 43.89 3.68
239 240 1.257055 TGCCTAGGCCCAATGCAAAC 61.257 55.000 30.81 0.00 43.89 2.93
240 241 0.972471 GCCTAGGCCCAATGCAAACT 60.972 55.000 24.19 0.00 43.89 2.66
241 242 1.684869 GCCTAGGCCCAATGCAAACTA 60.685 52.381 24.19 0.00 43.89 2.24
242 243 2.024414 CCTAGGCCCAATGCAAACTAC 58.976 52.381 0.00 0.00 43.89 2.73
243 244 2.024414 CTAGGCCCAATGCAAACTACC 58.976 52.381 0.00 0.00 43.89 3.18
244 245 0.114168 AGGCCCAATGCAAACTACCA 59.886 50.000 0.00 0.00 43.89 3.25
245 246 0.972883 GGCCCAATGCAAACTACCAA 59.027 50.000 0.00 0.00 43.89 3.67
246 247 1.346068 GGCCCAATGCAAACTACCAAA 59.654 47.619 0.00 0.00 43.89 3.28
247 248 2.412870 GCCCAATGCAAACTACCAAAC 58.587 47.619 0.00 0.00 40.77 2.93
248 249 2.671596 CCCAATGCAAACTACCAAACG 58.328 47.619 0.00 0.00 0.00 3.60
249 250 2.058057 CCAATGCAAACTACCAAACGC 58.942 47.619 0.00 0.00 0.00 4.84
250 251 1.713404 CAATGCAAACTACCAAACGCG 59.287 47.619 3.53 3.53 0.00 6.01
251 252 0.948678 ATGCAAACTACCAAACGCGT 59.051 45.000 5.58 5.58 0.00 6.01
252 253 1.579698 TGCAAACTACCAAACGCGTA 58.420 45.000 14.46 0.00 0.00 4.42
253 254 1.261089 TGCAAACTACCAAACGCGTAC 59.739 47.619 14.46 0.00 0.00 3.67
254 255 1.528161 GCAAACTACCAAACGCGTACT 59.472 47.619 14.46 0.00 0.00 2.73
255 256 2.730928 GCAAACTACCAAACGCGTACTA 59.269 45.455 14.46 0.00 0.00 1.82
256 257 3.184178 GCAAACTACCAAACGCGTACTAA 59.816 43.478 14.46 0.00 0.00 2.24
257 258 4.143052 GCAAACTACCAAACGCGTACTAAT 60.143 41.667 14.46 0.00 0.00 1.73
258 259 5.062058 GCAAACTACCAAACGCGTACTAATA 59.938 40.000 14.46 0.78 0.00 0.98
259 260 6.400940 GCAAACTACCAAACGCGTACTAATAA 60.401 38.462 14.46 0.00 0.00 1.40
260 261 6.875926 AACTACCAAACGCGTACTAATAAG 57.124 37.500 14.46 7.28 0.00 1.73
261 262 6.194796 ACTACCAAACGCGTACTAATAAGA 57.805 37.500 14.46 0.00 0.00 2.10
262 263 6.799512 ACTACCAAACGCGTACTAATAAGAT 58.200 36.000 14.46 0.00 0.00 2.40
263 264 7.930217 ACTACCAAACGCGTACTAATAAGATA 58.070 34.615 14.46 0.00 0.00 1.98
264 265 8.571336 ACTACCAAACGCGTACTAATAAGATAT 58.429 33.333 14.46 0.00 0.00 1.63
265 266 7.864307 ACCAAACGCGTACTAATAAGATATC 57.136 36.000 14.46 0.00 0.00 1.63
558 922 1.308047 GATTCACAGCCACACACACA 58.692 50.000 0.00 0.00 0.00 3.72
559 923 1.002468 GATTCACAGCCACACACACAC 60.002 52.381 0.00 0.00 0.00 3.82
560 924 0.322008 TTCACAGCCACACACACACA 60.322 50.000 0.00 0.00 0.00 3.72
561 925 1.024046 TCACAGCCACACACACACAC 61.024 55.000 0.00 0.00 0.00 3.82
562 926 1.002746 ACAGCCACACACACACACA 60.003 52.632 0.00 0.00 0.00 3.72
563 927 1.305219 ACAGCCACACACACACACAC 61.305 55.000 0.00 0.00 0.00 3.82
564 928 1.748879 AGCCACACACACACACACC 60.749 57.895 0.00 0.00 0.00 4.16
565 929 2.770589 GCCACACACACACACACCC 61.771 63.158 0.00 0.00 0.00 4.61
566 930 2.118404 CCACACACACACACACCCC 61.118 63.158 0.00 0.00 0.00 4.95
567 931 2.118404 CACACACACACACACCCCC 61.118 63.158 0.00 0.00 0.00 5.40
568 932 2.273776 CACACACACACACCCCCA 59.726 61.111 0.00 0.00 0.00 4.96
569 933 2.118404 CACACACACACACCCCCAC 61.118 63.158 0.00 0.00 0.00 4.61
624 988 1.076995 GCCCACCTCGCCCTAAAAT 60.077 57.895 0.00 0.00 0.00 1.82
680 1053 2.506061 CCGAGAGCCCATCCCAGAG 61.506 68.421 0.00 0.00 0.00 3.35
712 1085 4.201122 GATCCAGCCAGCCCAGGG 62.201 72.222 0.00 0.00 0.00 4.45
778 1152 2.282462 CCGAAGCAGCCCCAAAGT 60.282 61.111 0.00 0.00 0.00 2.66
1158 1532 4.374702 GAAGCACAGCGCACCGTG 62.375 66.667 11.47 15.16 46.13 4.94
1162 1536 4.662961 CACAGCGCACCGTGGAGA 62.663 66.667 11.47 0.00 0.00 3.71
1164 1538 4.363990 CAGCGCACCGTGGAGAGT 62.364 66.667 11.47 0.00 0.00 3.24
1165 1539 4.057428 AGCGCACCGTGGAGAGTC 62.057 66.667 11.47 0.00 0.00 3.36
1168 1542 3.371063 GCACCGTGGAGAGTCCGA 61.371 66.667 0.00 0.00 40.17 4.55
1170 1544 1.674651 CACCGTGGAGAGTCCGAGA 60.675 63.158 0.00 0.00 40.17 4.04
1171 1545 1.377463 ACCGTGGAGAGTCCGAGAG 60.377 63.158 0.00 0.00 40.17 3.20
1172 1546 1.078356 CCGTGGAGAGTCCGAGAGA 60.078 63.158 0.00 0.00 40.17 3.10
1173 1547 0.464735 CCGTGGAGAGTCCGAGAGAT 60.465 60.000 0.00 0.00 40.17 2.75
1174 1548 0.941542 CGTGGAGAGTCCGAGAGATC 59.058 60.000 0.00 0.00 40.17 2.75
1175 1549 1.314730 GTGGAGAGTCCGAGAGATCC 58.685 60.000 0.00 0.00 40.17 3.36
1177 1551 0.107081 GGAGAGTCCGAGAGATCCGA 59.893 60.000 0.00 0.00 0.00 4.55
1180 1564 0.179040 GAGTCCGAGAGATCCGAGGT 60.179 60.000 0.00 0.00 0.00 3.85
1187 1571 1.834822 GAGATCCGAGGTGGGGAGG 60.835 68.421 0.00 0.00 36.91 4.30
1188 1572 2.282446 GATCCGAGGTGGGGAGGA 59.718 66.667 0.00 0.00 36.91 3.71
1198 1582 0.324091 GTGGGGAGGAAGGACGTAGA 60.324 60.000 0.00 0.00 0.00 2.59
1372 1778 2.835895 GCTCTCTCCCGACCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
1374 1780 4.124943 TCTCTCCCGACCCTCCCG 62.125 72.222 0.00 0.00 0.00 5.14
1531 1937 0.316854 GGGAATCGCTCGACTACGTC 60.317 60.000 0.00 0.00 40.69 4.34
1625 2032 2.706190 AGGCTACCCGCTTTATCTGAAT 59.294 45.455 0.00 0.00 39.13 2.57
1656 2065 1.382522 ATGGCGTTGGCTTCATACTG 58.617 50.000 0.00 0.00 39.81 2.74
1657 2066 0.676466 TGGCGTTGGCTTCATACTGG 60.676 55.000 0.00 0.00 39.81 4.00
1659 2068 1.668419 GCGTTGGCTTCATACTGGAT 58.332 50.000 0.00 0.00 35.83 3.41
1666 2081 6.555315 GTTGGCTTCATACTGGATTTTACTG 58.445 40.000 0.00 0.00 0.00 2.74
1689 2104 3.834489 ATTCCTGCTAGATGTGTCCAG 57.166 47.619 0.00 0.00 0.00 3.86
1698 2113 2.786539 GATGTGTCCAGCGCAGACCA 62.787 60.000 22.92 19.89 41.34 4.02
1700 2115 2.031012 TGTCCAGCGCAGACCAAG 59.969 61.111 22.92 0.00 33.09 3.61
1706 2121 3.056328 GCGCAGACCAAGGGGAAC 61.056 66.667 0.30 0.00 38.05 3.62
1709 2125 0.391263 CGCAGACCAAGGGGAACTAC 60.391 60.000 0.00 0.00 38.05 2.73
1712 2128 0.178912 AGACCAAGGGGAACTACGGT 60.179 55.000 0.00 0.00 37.71 4.83
1720 2136 0.100146 GGGAACTACGGTAGAGTGCG 59.900 60.000 21.39 0.00 0.00 5.34
1725 2141 0.800631 CTACGGTAGAGTGCGTGTGA 59.199 55.000 9.60 0.00 0.00 3.58
1728 2144 0.992072 CGGTAGAGTGCGTGTGATTG 59.008 55.000 0.00 0.00 0.00 2.67
1731 2147 3.064207 GGTAGAGTGCGTGTGATTGAAA 58.936 45.455 0.00 0.00 0.00 2.69
1733 2149 4.154195 GGTAGAGTGCGTGTGATTGAAATT 59.846 41.667 0.00 0.00 0.00 1.82
1747 2163 6.364435 GTGATTGAAATTCAAAGAGAGTTGGC 59.636 38.462 12.75 0.00 40.12 4.52
1752 2168 7.950512 TGAAATTCAAAGAGAGTTGGCAATAA 58.049 30.769 1.92 0.00 0.00 1.40
1756 2172 7.765695 TTCAAAGAGAGTTGGCAATAAGATT 57.234 32.000 1.92 0.00 0.00 2.40
1758 2174 5.573337 AAGAGAGTTGGCAATAAGATTGC 57.427 39.130 14.42 14.42 44.22 3.56
1775 2191 1.078709 TGCTCGCATGTTAGCTCAAC 58.921 50.000 18.32 0.00 39.53 3.18
1787 2203 1.524482 GCTCAACTAGCCAGGAGGG 59.476 63.158 0.00 0.00 46.25 4.30
1793 2209 3.116746 TCAACTAGCCAGGAGGGATGATA 60.117 47.826 0.00 0.00 40.01 2.15
1801 2217 2.234661 CAGGAGGGATGATATTAGCGCA 59.765 50.000 11.47 0.00 0.00 6.09
1824 2249 1.737838 TGGAATGCTCGTGTTCCATC 58.262 50.000 5.68 0.00 46.59 3.51
1838 2263 3.320826 TGTTCCATCTCTCGTTGAGTGAA 59.679 43.478 3.07 7.04 43.13 3.18
1839 2264 4.202212 TGTTCCATCTCTCGTTGAGTGAAA 60.202 41.667 3.07 0.00 43.13 2.69
1840 2265 4.808414 TCCATCTCTCGTTGAGTGAAAT 57.192 40.909 3.07 0.00 43.13 2.17
1841 2266 4.498241 TCCATCTCTCGTTGAGTGAAATG 58.502 43.478 3.07 0.00 43.13 2.32
1842 2267 4.021104 TCCATCTCTCGTTGAGTGAAATGT 60.021 41.667 3.07 0.00 43.13 2.71
1843 2268 5.185056 TCCATCTCTCGTTGAGTGAAATGTA 59.815 40.000 3.07 0.00 43.13 2.29
1844 2269 5.869344 CCATCTCTCGTTGAGTGAAATGTAA 59.131 40.000 3.07 0.00 43.13 2.41
1845 2270 6.368791 CCATCTCTCGTTGAGTGAAATGTAAA 59.631 38.462 3.07 0.00 43.13 2.01
1846 2271 7.065085 CCATCTCTCGTTGAGTGAAATGTAAAT 59.935 37.037 3.07 0.00 43.13 1.40
1847 2272 9.087424 CATCTCTCGTTGAGTGAAATGTAAATA 57.913 33.333 3.07 0.00 43.13 1.40
1848 2273 9.653287 ATCTCTCGTTGAGTGAAATGTAAATAA 57.347 29.630 3.07 0.00 43.13 1.40
1849 2274 8.922676 TCTCTCGTTGAGTGAAATGTAAATAAC 58.077 33.333 7.74 0.00 43.13 1.89
1888 2313 1.040339 TTTTGTGTGGGAGTGGTGCC 61.040 55.000 0.00 0.00 33.79 5.01
1896 2321 1.194781 GGGAGTGGTGCCTGAGAAGA 61.195 60.000 0.00 0.00 0.00 2.87
1897 2322 0.908198 GGAGTGGTGCCTGAGAAGAT 59.092 55.000 0.00 0.00 0.00 2.40
1898 2323 1.280421 GGAGTGGTGCCTGAGAAGATT 59.720 52.381 0.00 0.00 0.00 2.40
1899 2324 2.626840 GAGTGGTGCCTGAGAAGATTC 58.373 52.381 0.00 0.00 0.00 2.52
1900 2325 1.980765 AGTGGTGCCTGAGAAGATTCA 59.019 47.619 0.00 0.00 0.00 2.57
1901 2326 2.027377 AGTGGTGCCTGAGAAGATTCAG 60.027 50.000 0.00 0.00 43.35 3.02
1902 2327 1.339438 TGGTGCCTGAGAAGATTCAGC 60.339 52.381 0.00 0.00 42.58 4.26
1936 2361 1.534595 ACGTACTTCGAGTCTGGTGAC 59.465 52.381 0.00 0.00 42.86 3.67
1964 2390 1.187567 GCTTGCACCCAAATCCCACT 61.188 55.000 0.00 0.00 0.00 4.00
2016 2442 0.814457 AGCTGACCTTGCGAGACTAG 59.186 55.000 1.22 0.00 35.28 2.57
2027 2453 5.814705 CCTTGCGAGACTAGAAATTTCTCAT 59.185 40.000 23.70 13.26 38.70 2.90
2028 2454 6.980978 CCTTGCGAGACTAGAAATTTCTCATA 59.019 38.462 23.70 6.48 38.70 2.15
2029 2455 7.043059 CCTTGCGAGACTAGAAATTTCTCATAC 60.043 40.741 23.70 13.46 38.70 2.39
2030 2456 5.971792 TGCGAGACTAGAAATTTCTCATACG 59.028 40.000 23.70 21.32 38.70 3.06
2032 2458 5.399892 CGAGACTAGAAATTTCTCATACGGC 59.600 44.000 23.70 10.68 38.70 5.68
2033 2459 5.282510 AGACTAGAAATTTCTCATACGGCG 58.717 41.667 23.70 4.80 38.70 6.46
2035 2461 3.536956 AGAAATTTCTCATACGGCGGA 57.463 42.857 15.11 1.23 29.94 5.54
2037 2463 4.291984 AGAAATTTCTCATACGGCGGAGC 61.292 47.826 15.11 0.00 44.50 4.70
2064 2498 6.493189 AAAAGGGTGATTGGTTTACACAAT 57.507 33.333 0.00 0.00 40.98 2.71
2066 2500 5.722021 AGGGTGATTGGTTTACACAATTC 57.278 39.130 0.00 0.00 38.57 2.17
2087 2521 4.136051 TCTGTTGCTCATGTGTCAAATGA 58.864 39.130 5.56 5.56 33.13 2.57
2089 2523 5.939296 TCTGTTGCTCATGTGTCAAATGATA 59.061 36.000 6.14 0.00 33.69 2.15
2093 2527 6.381481 TGCTCATGTGTCAAATGATATTCC 57.619 37.500 6.14 0.00 33.69 3.01
2094 2528 5.300034 TGCTCATGTGTCAAATGATATTCCC 59.700 40.000 6.14 0.00 33.69 3.97
2103 2677 6.597672 TGTCAAATGATATTCCCACACAGTAC 59.402 38.462 0.00 0.00 0.00 2.73
2280 2856 4.572909 ACTTTAAATGTACCGAGGTGGAC 58.427 43.478 4.80 0.00 42.00 4.02
2341 2917 7.119262 GGTACTATATGTGGGTTATTGTGCATC 59.881 40.741 0.00 0.00 0.00 3.91
2594 3171 9.801873 AATGTTCAAATGATAATCTTTTACGGG 57.198 29.630 0.00 0.00 0.00 5.28
2615 3192 5.104941 CGGGGCCTATGATCATCTTATAACA 60.105 44.000 12.53 0.00 0.00 2.41
2677 3254 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2744 3382 4.941263 TGAGACATTTATTTTGGGACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2745 3383 5.174037 AGACATTTATTTTGGGACGGAGA 57.826 39.130 0.00 0.00 0.00 3.71
2748 3386 5.186198 ACATTTATTTTGGGACGGAGAGAG 58.814 41.667 0.00 0.00 0.00 3.20
2802 3442 7.361201 GCAAGATCTACTACAAAACTCATGCAA 60.361 37.037 0.00 0.00 0.00 4.08
2931 3615 3.247648 GTCTTGTCAAAGCATGTGTACGT 59.752 43.478 0.00 0.00 33.06 3.57
2956 3640 9.612620 GTTGATTAGAAGACAATACTGTTTTGG 57.387 33.333 14.06 0.00 35.30 3.28
2976 3660 8.610035 GTTTTGGTAATCAGCAAGTATACTACC 58.390 37.037 5.65 7.94 42.72 3.18
2977 3661 7.426606 TTGGTAATCAGCAAGTATACTACCA 57.573 36.000 13.48 13.48 37.24 3.25
3081 3765 1.670811 CACACTGGAGCAGACGTTTTT 59.329 47.619 0.00 0.00 35.18 1.94
3087 3771 2.037251 TGGAGCAGACGTTTTTAGAGCT 59.963 45.455 0.00 0.00 0.00 4.09
3094 3778 5.324697 CAGACGTTTTTAGAGCTATTTGCC 58.675 41.667 0.00 0.00 44.23 4.52
3108 3792 1.777941 TTTGCCCCGTTACCAAAAGT 58.222 45.000 0.00 0.00 0.00 2.66
3119 3803 5.984926 CCGTTACCAAAAGTGTGTCTACTTA 59.015 40.000 0.00 0.00 39.86 2.24
3127 3811 8.895737 CCAAAAGTGTGTCTACTTAACCTTTTA 58.104 33.333 0.00 0.00 39.86 1.52
3724 4408 7.847711 TTTCATACAGAAAAATGGGGAAGAA 57.152 32.000 0.00 0.00 43.00 2.52
3726 4410 7.408756 TCATACAGAAAAATGGGGAAGAATG 57.591 36.000 0.00 0.00 0.00 2.67
3727 4411 7.181361 TCATACAGAAAAATGGGGAAGAATGA 58.819 34.615 0.00 0.00 0.00 2.57
3728 4412 7.840716 TCATACAGAAAAATGGGGAAGAATGAT 59.159 33.333 0.00 0.00 0.00 2.45
3729 4413 6.290294 ACAGAAAAATGGGGAAGAATGATG 57.710 37.500 0.00 0.00 0.00 3.07
3731 4415 5.028131 AGAAAAATGGGGAAGAATGATGCT 58.972 37.500 0.00 0.00 0.00 3.79
3732 4416 6.097270 CAGAAAAATGGGGAAGAATGATGCTA 59.903 38.462 0.00 0.00 0.00 3.49
3733 4417 5.859205 AAAATGGGGAAGAATGATGCTAC 57.141 39.130 0.00 0.00 0.00 3.58
3796 4481 1.913778 ATTCATCACAAGCACTGGCA 58.086 45.000 0.00 0.00 44.61 4.92
3846 4531 3.888323 TGTCAAGCTGGAGCAAAATGTTA 59.112 39.130 0.00 0.00 45.16 2.41
3975 4852 4.081406 TGTGCAAATCCTTTCTGCAGTAT 58.919 39.130 14.67 0.00 46.16 2.12
3980 4857 6.071221 TGCAAATCCTTTCTGCAGTATCATTT 60.071 34.615 14.67 9.96 41.01 2.32
3981 4858 6.815142 GCAAATCCTTTCTGCAGTATCATTTT 59.185 34.615 14.67 6.15 36.09 1.82
3982 4859 7.332678 GCAAATCCTTTCTGCAGTATCATTTTT 59.667 33.333 14.67 4.73 36.09 1.94
3983 4860 9.859427 CAAATCCTTTCTGCAGTATCATTTTTA 57.141 29.630 14.67 0.00 0.00 1.52
4177 5054 4.581409 GGCTTGCGGACCCTAATAAATTAA 59.419 41.667 0.00 0.00 0.00 1.40
4334 5212 1.740025 GGTACATCACTTTGCCTGAGC 59.260 52.381 0.00 0.00 40.48 4.26
4545 5423 1.672881 GTAGCCATGCAACAGATGGAC 59.327 52.381 7.48 0.00 42.81 4.02
4572 5450 4.967084 AAACCCAAGGGACCAAAATAAC 57.033 40.909 13.15 0.00 38.96 1.89
4581 5459 3.181490 GGGACCAAAATAACGCTCATTCC 60.181 47.826 0.00 0.00 0.00 3.01
4585 5463 4.093850 ACCAAAATAACGCTCATTCCGTAC 59.906 41.667 0.00 0.00 38.06 3.67
4754 5632 5.888161 AGGTCTGTCCTATTTTTGCCATAAG 59.112 40.000 0.00 0.00 46.10 1.73
4762 5640 8.831550 GTCCTATTTTTGCCATAAGAGAAGTAG 58.168 37.037 0.00 0.00 0.00 2.57
4827 5705 5.087323 TCTTGTCTCCATTACTCTTCCTGT 58.913 41.667 0.00 0.00 0.00 4.00
4916 5795 2.923121 ACATGCAATTACGATGGAGCT 58.077 42.857 0.00 0.00 0.00 4.09
4917 5796 2.615447 ACATGCAATTACGATGGAGCTG 59.385 45.455 0.00 0.00 0.00 4.24
4927 5806 1.364626 GATGGAGCTGCCGACAAGTG 61.365 60.000 1.53 0.00 40.66 3.16
4986 5865 4.728608 GCTGTTATAAACATTTCTTCCGCG 59.271 41.667 0.00 0.00 41.26 6.46
4988 5867 4.393680 TGTTATAAACATTTCTTCCGCGCT 59.606 37.500 5.56 0.00 36.25 5.92
5097 5976 3.439476 ACGAAGCTAACGACTGTATCTGT 59.561 43.478 17.72 0.00 34.70 3.41
5155 6034 5.471456 GGATTTCTGTTGTATGCTATCAGGG 59.529 44.000 0.00 0.00 0.00 4.45
5211 6090 6.993079 TGTGTACTGGAACTGCTATATATGG 58.007 40.000 0.00 0.00 0.00 2.74
5244 6123 7.216494 TGTGAATGTCAGAACTAAGATGTTGA 58.784 34.615 0.00 0.00 0.00 3.18
5249 6128 5.997746 TGTCAGAACTAAGATGTTGAAAGGG 59.002 40.000 0.00 0.00 0.00 3.95
5255 6134 2.683211 AGATGTTGAAAGGGGTGCTT 57.317 45.000 0.00 0.00 0.00 3.91
5257 6136 3.308401 AGATGTTGAAAGGGGTGCTTTT 58.692 40.909 0.00 0.00 0.00 2.27
5258 6137 2.977772 TGTTGAAAGGGGTGCTTTTG 57.022 45.000 0.00 0.00 0.00 2.44
5259 6138 2.461695 TGTTGAAAGGGGTGCTTTTGA 58.538 42.857 0.00 0.00 0.00 2.69
5260 6139 2.167487 TGTTGAAAGGGGTGCTTTTGAC 59.833 45.455 0.00 0.00 0.00 3.18
5261 6140 2.151502 TGAAAGGGGTGCTTTTGACA 57.848 45.000 0.00 0.00 0.00 3.58
5263 6142 3.838565 TGAAAGGGGTGCTTTTGACATA 58.161 40.909 0.00 0.00 0.00 2.29
5264 6143 4.219115 TGAAAGGGGTGCTTTTGACATAA 58.781 39.130 0.00 0.00 0.00 1.90
5266 6145 2.159382 AGGGGTGCTTTTGACATAACG 58.841 47.619 0.00 0.00 0.00 3.18
5267 6146 2.156098 GGGGTGCTTTTGACATAACGA 58.844 47.619 0.00 0.00 0.00 3.85
5268 6147 2.554893 GGGGTGCTTTTGACATAACGAA 59.445 45.455 0.00 0.00 0.00 3.85
5269 6148 3.365969 GGGGTGCTTTTGACATAACGAAG 60.366 47.826 0.00 0.00 0.00 3.79
5270 6149 3.234386 GGTGCTTTTGACATAACGAAGC 58.766 45.455 0.00 0.00 0.00 3.86
5271 6150 3.058224 GGTGCTTTTGACATAACGAAGCT 60.058 43.478 7.74 0.00 0.00 3.74
5276 6174 2.010145 TGACATAACGAAGCTGGAGC 57.990 50.000 0.00 0.00 42.49 4.70
5296 6194 2.287427 GCATGTGTTGGCTATGAGCATC 60.287 50.000 0.21 0.00 44.75 3.91
5299 6197 1.945394 GTGTTGGCTATGAGCATCTGG 59.055 52.381 0.21 0.00 44.75 3.86
5301 6199 1.133976 GTTGGCTATGAGCATCTGGGT 60.134 52.381 0.21 0.00 44.75 4.51
5304 6202 1.055040 GCTATGAGCATCTGGGTCCT 58.945 55.000 0.00 0.00 43.44 3.85
5325 6223 2.801113 TTCGACGTAACGAAGCCGGG 62.801 60.000 2.18 0.00 45.21 5.73
5520 6575 3.219052 TGTTGGAAAACAAACGTGTCC 57.781 42.857 0.00 0.00 41.58 4.02
5595 6650 1.005867 CGCAGCAAACTGGCCAAAT 60.006 52.632 7.01 0.00 44.63 2.32
5596 6651 0.243365 CGCAGCAAACTGGCCAAATA 59.757 50.000 7.01 0.00 44.63 1.40
5611 6666 5.182760 TGGCCAAATATGCAAACCAAAAATC 59.817 36.000 0.61 0.00 0.00 2.17
5620 6675 2.736192 CAAACCAAAAATCATGCGACCC 59.264 45.455 0.00 0.00 0.00 4.46
5677 6734 2.684374 TCATCTCAACCAATCCAATGCG 59.316 45.455 0.00 0.00 0.00 4.73
5714 6771 1.078143 CTTCACCTGGCCTGCTACC 60.078 63.158 3.32 0.00 0.00 3.18
5737 6794 2.584064 CCGAGCTACATGGCCACA 59.416 61.111 8.16 0.00 0.00 4.17
5760 6817 3.767230 CGTTGCTCGGCTGTGACG 61.767 66.667 0.00 0.00 35.71 4.35
5762 6819 1.372499 GTTGCTCGGCTGTGACGTA 60.372 57.895 0.00 0.00 34.61 3.57
5783 6840 6.209589 ACGTATGCATCTCTACCAAGATATGT 59.790 38.462 0.19 0.00 38.17 2.29
5784 6841 6.529477 CGTATGCATCTCTACCAAGATATGTG 59.471 42.308 0.19 0.00 38.17 3.21
5785 6842 6.676990 ATGCATCTCTACCAAGATATGTGA 57.323 37.500 0.00 0.00 38.17 3.58
5798 6855 3.638627 AGATATGTGAGCATCTTCGACCA 59.361 43.478 0.00 0.00 36.58 4.02
5799 6856 2.306341 ATGTGAGCATCTTCGACCAG 57.694 50.000 0.00 0.00 34.92 4.00
5822 6879 5.377478 GGATTTATTCCAATCTCCGGAAGT 58.623 41.667 5.23 0.00 45.48 3.01
5855 6912 2.357760 TCGCTACCGTGCAAACCC 60.358 61.111 0.00 0.00 35.54 4.11
5861 6918 2.335092 TACCGTGCAAACCCCCGAAA 62.335 55.000 0.00 0.00 0.00 3.46
5978 7043 1.033202 AACACCCAAACCGGACACAC 61.033 55.000 9.46 0.00 36.56 3.82
5983 7048 1.677820 CCCAAACCGGACACACTATCC 60.678 57.143 9.46 0.00 36.56 2.59
6034 7099 1.745489 GGACAAGCCGACCATCCAC 60.745 63.158 0.00 0.00 0.00 4.02
6070 7164 0.802494 CCGGAGACATTTCAAACGGG 59.198 55.000 0.00 0.00 36.45 5.28
6076 7170 5.447279 CGGAGACATTTCAAACGGGATTTAG 60.447 44.000 0.00 0.00 0.00 1.85
6232 7326 5.899299 TCTAAACCTAGTCTAAATGACCGC 58.101 41.667 0.00 0.00 46.46 5.68
6237 7331 0.892755 AGTCTAAATGACCGCCGACA 59.107 50.000 0.00 0.00 46.46 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.473504 ACAACATGTACATGGTTTCTTCTCC 59.526 40.000 33.32 0.00 42.91 3.71
1 2 6.017109 ACACAACATGTACATGGTTTCTTCTC 60.017 38.462 33.32 0.00 40.88 2.87
3 4 6.072112 ACACAACATGTACATGGTTTCTTC 57.928 37.500 33.32 0.00 40.88 2.87
4 5 6.770785 ACTACACAACATGTACATGGTTTCTT 59.229 34.615 33.32 18.80 43.19 2.52
5 6 6.296026 ACTACACAACATGTACATGGTTTCT 58.704 36.000 33.32 15.46 43.19 2.52
6 7 6.554334 ACTACACAACATGTACATGGTTTC 57.446 37.500 33.32 0.00 43.19 2.78
7 8 7.221450 AGTACTACACAACATGTACATGGTTT 58.779 34.615 33.32 21.80 43.19 3.27
8 9 6.765403 AGTACTACACAACATGTACATGGTT 58.235 36.000 33.32 23.07 43.19 3.67
9 10 6.354794 AGTACTACACAACATGTACATGGT 57.645 37.500 33.32 27.92 43.19 3.55
11 12 5.004440 GCGAGTACTACACAACATGTACATG 59.996 44.000 29.97 29.97 43.19 3.21
12 13 5.100259 GCGAGTACTACACAACATGTACAT 58.900 41.667 1.41 1.41 43.19 2.29
13 14 4.023021 TGCGAGTACTACACAACATGTACA 60.023 41.667 0.00 0.00 43.19 2.90
14 15 4.478699 TGCGAGTACTACACAACATGTAC 58.521 43.478 0.00 0.00 43.19 2.90
15 16 4.769859 TGCGAGTACTACACAACATGTA 57.230 40.909 0.00 0.00 43.19 2.29
16 17 3.653539 TGCGAGTACTACACAACATGT 57.346 42.857 0.00 0.00 46.06 3.21
17 18 4.388773 ACAATGCGAGTACTACACAACATG 59.611 41.667 0.00 0.00 0.00 3.21
18 19 4.566004 ACAATGCGAGTACTACACAACAT 58.434 39.130 0.00 0.00 0.00 2.71
19 20 3.985008 ACAATGCGAGTACTACACAACA 58.015 40.909 0.00 0.00 0.00 3.33
20 21 4.235360 AGACAATGCGAGTACTACACAAC 58.765 43.478 0.00 0.00 0.00 3.32
21 22 4.482386 GAGACAATGCGAGTACTACACAA 58.518 43.478 0.00 0.00 0.00 3.33
22 23 3.425758 CGAGACAATGCGAGTACTACACA 60.426 47.826 0.00 0.00 0.00 3.72
23 24 3.099362 CGAGACAATGCGAGTACTACAC 58.901 50.000 0.00 0.00 0.00 2.90
24 25 2.745821 ACGAGACAATGCGAGTACTACA 59.254 45.455 0.00 0.00 0.00 2.74
25 26 3.099362 CACGAGACAATGCGAGTACTAC 58.901 50.000 0.00 0.00 0.00 2.73
26 27 2.477357 GCACGAGACAATGCGAGTACTA 60.477 50.000 0.00 0.00 30.97 1.82
27 28 1.732732 GCACGAGACAATGCGAGTACT 60.733 52.381 0.00 0.00 30.97 2.73
28 29 0.640768 GCACGAGACAATGCGAGTAC 59.359 55.000 0.00 0.00 30.97 2.73
29 30 0.242555 TGCACGAGACAATGCGAGTA 59.757 50.000 0.00 0.00 45.13 2.59
30 31 0.599991 TTGCACGAGACAATGCGAGT 60.600 50.000 0.00 0.00 45.13 4.18
31 32 0.179240 GTTGCACGAGACAATGCGAG 60.179 55.000 0.00 0.00 45.13 5.03
32 33 1.565156 GGTTGCACGAGACAATGCGA 61.565 55.000 0.00 0.00 45.13 5.10
33 34 1.154413 GGTTGCACGAGACAATGCG 60.154 57.895 0.00 0.00 45.13 4.73
34 35 1.154413 CGGTTGCACGAGACAATGC 60.154 57.895 0.00 0.00 42.40 3.56
35 36 0.865111 TTCGGTTGCACGAGACAATG 59.135 50.000 0.00 0.00 44.47 2.82
36 37 0.865769 GTTCGGTTGCACGAGACAAT 59.134 50.000 0.00 0.00 44.47 2.71
37 38 1.155424 GGTTCGGTTGCACGAGACAA 61.155 55.000 0.00 0.00 44.47 3.18
38 39 1.593209 GGTTCGGTTGCACGAGACA 60.593 57.895 0.00 0.00 44.47 3.41
39 40 2.315386 GGGTTCGGTTGCACGAGAC 61.315 63.158 0.00 2.56 44.47 3.36
40 41 2.029964 GGGTTCGGTTGCACGAGA 59.970 61.111 0.00 0.00 44.47 4.04
41 42 1.635663 GATGGGTTCGGTTGCACGAG 61.636 60.000 0.00 0.00 44.47 4.18
42 43 1.669760 GATGGGTTCGGTTGCACGA 60.670 57.895 0.00 0.00 41.76 4.35
43 44 2.686816 GGATGGGTTCGGTTGCACG 61.687 63.158 0.00 0.00 0.00 5.34
44 45 0.965363 ATGGATGGGTTCGGTTGCAC 60.965 55.000 0.00 0.00 0.00 4.57
45 46 0.964860 CATGGATGGGTTCGGTTGCA 60.965 55.000 0.00 0.00 0.00 4.08
46 47 1.809207 CATGGATGGGTTCGGTTGC 59.191 57.895 0.00 0.00 0.00 4.17
47 48 0.964860 TGCATGGATGGGTTCGGTTG 60.965 55.000 0.00 0.00 0.00 3.77
48 49 0.965363 GTGCATGGATGGGTTCGGTT 60.965 55.000 0.00 0.00 0.00 4.44
49 50 1.378514 GTGCATGGATGGGTTCGGT 60.379 57.895 0.00 0.00 0.00 4.69
50 51 2.120909 GGTGCATGGATGGGTTCGG 61.121 63.158 0.00 0.00 0.00 4.30
51 52 2.120909 GGGTGCATGGATGGGTTCG 61.121 63.158 0.00 0.00 0.00 3.95
52 53 1.758122 GGGGTGCATGGATGGGTTC 60.758 63.158 0.00 0.00 0.00 3.62
53 54 2.364160 GGGGTGCATGGATGGGTT 59.636 61.111 0.00 0.00 0.00 4.11
54 55 3.754472 GGGGGTGCATGGATGGGT 61.754 66.667 0.00 0.00 0.00 4.51
55 56 4.900704 CGGGGGTGCATGGATGGG 62.901 72.222 0.00 0.00 0.00 4.00
56 57 2.645394 AATCGGGGGTGCATGGATGG 62.645 60.000 0.00 0.00 0.00 3.51
57 58 0.756442 AAATCGGGGGTGCATGGATG 60.756 55.000 0.00 0.00 0.00 3.51
58 59 0.756442 CAAATCGGGGGTGCATGGAT 60.756 55.000 0.00 0.00 0.00 3.41
59 60 1.379710 CAAATCGGGGGTGCATGGA 60.380 57.895 0.00 0.00 0.00 3.41
60 61 2.425569 CCAAATCGGGGGTGCATGG 61.426 63.158 0.00 0.00 0.00 3.66
61 62 3.080045 GCCAAATCGGGGGTGCATG 62.080 63.158 0.00 0.00 34.06 4.06
62 63 2.759560 GCCAAATCGGGGGTGCAT 60.760 61.111 0.00 0.00 34.06 3.96
63 64 3.521765 AAGCCAAATCGGGGGTGCA 62.522 57.895 0.00 0.00 36.02 4.57
64 65 2.679996 AAGCCAAATCGGGGGTGC 60.680 61.111 0.00 0.00 36.02 5.01
65 66 1.304052 TGAAGCCAAATCGGGGGTG 60.304 57.895 0.00 0.00 36.02 4.61
66 67 1.304134 GTGAAGCCAAATCGGGGGT 60.304 57.895 0.00 0.00 37.86 4.95
67 68 1.000896 AGTGAAGCCAAATCGGGGG 60.001 57.895 0.00 0.00 34.06 5.40
68 69 0.322456 TGAGTGAAGCCAAATCGGGG 60.322 55.000 0.00 0.00 34.06 5.73
69 70 1.089920 CTGAGTGAAGCCAAATCGGG 58.910 55.000 0.00 0.00 34.06 5.14
70 71 1.734465 GACTGAGTGAAGCCAAATCGG 59.266 52.381 0.00 0.00 38.11 4.18
71 72 2.414481 CAGACTGAGTGAAGCCAAATCG 59.586 50.000 0.00 0.00 0.00 3.34
72 73 2.746362 CCAGACTGAGTGAAGCCAAATC 59.254 50.000 3.32 0.00 0.00 2.17
73 74 2.787994 CCAGACTGAGTGAAGCCAAAT 58.212 47.619 3.32 0.00 0.00 2.32
74 75 1.815408 GCCAGACTGAGTGAAGCCAAA 60.815 52.381 3.32 0.00 0.00 3.28
75 76 0.250467 GCCAGACTGAGTGAAGCCAA 60.250 55.000 3.32 0.00 0.00 4.52
76 77 1.123861 AGCCAGACTGAGTGAAGCCA 61.124 55.000 3.32 0.00 0.00 4.75
77 78 0.390998 GAGCCAGACTGAGTGAAGCC 60.391 60.000 3.32 0.00 0.00 4.35
78 79 0.735632 CGAGCCAGACTGAGTGAAGC 60.736 60.000 3.32 0.00 0.00 3.86
79 80 0.735632 GCGAGCCAGACTGAGTGAAG 60.736 60.000 3.32 0.00 0.00 3.02
80 81 1.181741 AGCGAGCCAGACTGAGTGAA 61.182 55.000 3.32 0.00 0.00 3.18
81 82 0.322546 TAGCGAGCCAGACTGAGTGA 60.323 55.000 3.32 0.00 0.00 3.41
82 83 0.100325 CTAGCGAGCCAGACTGAGTG 59.900 60.000 3.32 0.00 0.00 3.51
83 84 0.034960 TCTAGCGAGCCAGACTGAGT 60.035 55.000 3.32 0.00 0.00 3.41
84 85 1.098869 TTCTAGCGAGCCAGACTGAG 58.901 55.000 3.32 0.00 0.00 3.35
85 86 1.202582 GTTTCTAGCGAGCCAGACTGA 59.797 52.381 3.32 0.00 0.00 3.41
86 87 1.634702 GTTTCTAGCGAGCCAGACTG 58.365 55.000 0.00 0.00 0.00 3.51
87 88 0.171455 CGTTTCTAGCGAGCCAGACT 59.829 55.000 0.00 0.00 0.00 3.24
88 89 0.802607 CCGTTTCTAGCGAGCCAGAC 60.803 60.000 0.00 0.00 0.00 3.51
89 90 1.248785 ACCGTTTCTAGCGAGCCAGA 61.249 55.000 0.00 0.00 0.00 3.86
90 91 0.802607 GACCGTTTCTAGCGAGCCAG 60.803 60.000 0.00 0.00 0.00 4.85
91 92 1.214589 GACCGTTTCTAGCGAGCCA 59.785 57.895 0.00 0.00 0.00 4.75
92 93 1.872679 CGACCGTTTCTAGCGAGCC 60.873 63.158 0.00 0.00 0.00 4.70
93 94 0.248539 ATCGACCGTTTCTAGCGAGC 60.249 55.000 0.00 0.00 34.25 5.03
94 95 2.190325 AATCGACCGTTTCTAGCGAG 57.810 50.000 0.00 0.00 34.25 5.03
95 96 2.256174 CAAATCGACCGTTTCTAGCGA 58.744 47.619 0.00 0.00 35.32 4.93
96 97 1.323534 CCAAATCGACCGTTTCTAGCG 59.676 52.381 0.00 0.00 0.00 4.26
97 98 1.062148 GCCAAATCGACCGTTTCTAGC 59.938 52.381 0.00 0.00 0.00 3.42
98 99 1.664151 GGCCAAATCGACCGTTTCTAG 59.336 52.381 0.00 0.00 0.00 2.43
99 100 1.729284 GGCCAAATCGACCGTTTCTA 58.271 50.000 0.00 0.00 0.00 2.10
100 101 1.296056 CGGCCAAATCGACCGTTTCT 61.296 55.000 2.24 0.00 42.01 2.52
101 102 1.133869 CGGCCAAATCGACCGTTTC 59.866 57.895 2.24 0.00 42.01 2.78
102 103 3.259930 CGGCCAAATCGACCGTTT 58.740 55.556 2.24 0.00 42.01 3.60
106 107 0.958876 AAGGAACGGCCAAATCGACC 60.959 55.000 2.24 0.00 40.02 4.79
107 108 0.879090 AAAGGAACGGCCAAATCGAC 59.121 50.000 2.24 0.00 40.02 4.20
108 109 0.878416 CAAAGGAACGGCCAAATCGA 59.122 50.000 2.24 0.00 40.02 3.59
109 110 0.109319 CCAAAGGAACGGCCAAATCG 60.109 55.000 2.24 0.00 40.02 3.34
110 111 1.253100 TCCAAAGGAACGGCCAAATC 58.747 50.000 2.24 0.00 40.02 2.17
111 112 1.937191 ATCCAAAGGAACGGCCAAAT 58.063 45.000 2.24 0.00 40.02 2.32
112 113 2.588464 TATCCAAAGGAACGGCCAAA 57.412 45.000 2.24 0.00 40.02 3.28
113 114 2.818751 ATATCCAAAGGAACGGCCAA 57.181 45.000 2.24 0.00 40.02 4.52
114 115 2.105821 CCTATATCCAAAGGAACGGCCA 59.894 50.000 2.24 0.00 40.02 5.36
115 116 2.779506 CCTATATCCAAAGGAACGGCC 58.220 52.381 0.00 0.00 34.34 6.13
116 117 2.152016 GCCTATATCCAAAGGAACGGC 58.848 52.381 0.00 0.00 34.34 5.68
117 118 2.552373 GGGCCTATATCCAAAGGAACGG 60.552 54.545 0.84 0.00 34.34 4.44
118 119 2.105821 TGGGCCTATATCCAAAGGAACG 59.894 50.000 4.53 0.00 34.34 3.95
119 120 3.394606 TCTGGGCCTATATCCAAAGGAAC 59.605 47.826 4.53 0.00 34.34 3.62
120 121 3.652869 CTCTGGGCCTATATCCAAAGGAA 59.347 47.826 4.53 0.00 34.34 3.36
121 122 3.251484 CTCTGGGCCTATATCCAAAGGA 58.749 50.000 4.53 0.00 34.58 3.36
122 123 2.307098 CCTCTGGGCCTATATCCAAAGG 59.693 54.545 4.53 0.00 35.23 3.11
123 124 2.982488 ACCTCTGGGCCTATATCCAAAG 59.018 50.000 4.53 0.00 35.63 2.77
124 125 3.074857 ACCTCTGGGCCTATATCCAAA 57.925 47.619 4.53 0.00 35.63 3.28
125 126 2.711009 CAACCTCTGGGCCTATATCCAA 59.289 50.000 4.53 0.00 35.63 3.53
126 127 2.338809 CAACCTCTGGGCCTATATCCA 58.661 52.381 4.53 0.00 35.63 3.41
127 128 2.339769 ACAACCTCTGGGCCTATATCC 58.660 52.381 4.53 0.00 35.63 2.59
128 129 4.439253 AAACAACCTCTGGGCCTATATC 57.561 45.455 4.53 0.00 35.63 1.63
129 130 5.432060 ACTTAAACAACCTCTGGGCCTATAT 59.568 40.000 4.53 0.00 35.63 0.86
130 131 4.786454 ACTTAAACAACCTCTGGGCCTATA 59.214 41.667 4.53 0.00 35.63 1.31
131 132 3.591977 ACTTAAACAACCTCTGGGCCTAT 59.408 43.478 4.53 0.00 35.63 2.57
132 133 2.983898 ACTTAAACAACCTCTGGGCCTA 59.016 45.455 4.53 0.00 35.63 3.93
133 134 1.780919 ACTTAAACAACCTCTGGGCCT 59.219 47.619 4.53 0.00 35.63 5.19
134 135 2.287977 ACTTAAACAACCTCTGGGCC 57.712 50.000 0.00 0.00 35.63 5.80
135 136 3.304458 CGAAACTTAAACAACCTCTGGGC 60.304 47.826 0.00 0.00 35.63 5.36
136 137 3.881089 ACGAAACTTAAACAACCTCTGGG 59.119 43.478 0.00 0.00 38.88 4.45
137 138 4.788521 GCACGAAACTTAAACAACCTCTGG 60.789 45.833 0.00 0.00 0.00 3.86
138 139 4.279659 GCACGAAACTTAAACAACCTCTG 58.720 43.478 0.00 0.00 0.00 3.35
139 140 3.314357 GGCACGAAACTTAAACAACCTCT 59.686 43.478 0.00 0.00 0.00 3.69
140 141 3.624900 GGCACGAAACTTAAACAACCTC 58.375 45.455 0.00 0.00 0.00 3.85
141 142 3.703286 GGCACGAAACTTAAACAACCT 57.297 42.857 0.00 0.00 0.00 3.50
157 158 1.007387 CAGAAAAGTTGGCCGGCAC 60.007 57.895 30.85 19.41 0.00 5.01
158 159 2.855514 GCAGAAAAGTTGGCCGGCA 61.856 57.895 30.85 12.04 0.00 5.69
159 160 2.049156 GCAGAAAAGTTGGCCGGC 60.049 61.111 21.18 21.18 0.00 6.13
160 161 1.172180 TCAGCAGAAAAGTTGGCCGG 61.172 55.000 0.00 0.00 0.00 6.13
161 162 0.883833 ATCAGCAGAAAAGTTGGCCG 59.116 50.000 0.00 0.00 0.00 6.13
162 163 1.203287 GGATCAGCAGAAAAGTTGGCC 59.797 52.381 0.00 0.00 0.00 5.36
163 164 1.135575 CGGATCAGCAGAAAAGTTGGC 60.136 52.381 0.00 0.00 0.00 4.52
164 165 2.154462 ACGGATCAGCAGAAAAGTTGG 58.846 47.619 0.00 0.00 0.00 3.77
165 166 3.070018 AGACGGATCAGCAGAAAAGTTG 58.930 45.455 0.00 0.00 0.00 3.16
166 167 3.409026 AGACGGATCAGCAGAAAAGTT 57.591 42.857 0.00 0.00 0.00 2.66
167 168 4.246458 GTTAGACGGATCAGCAGAAAAGT 58.754 43.478 0.00 0.00 0.00 2.66
168 169 3.619038 GGTTAGACGGATCAGCAGAAAAG 59.381 47.826 0.00 0.00 0.00 2.27
169 170 3.007506 TGGTTAGACGGATCAGCAGAAAA 59.992 43.478 0.00 0.00 0.00 2.29
170 171 2.565391 TGGTTAGACGGATCAGCAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
171 172 2.176045 TGGTTAGACGGATCAGCAGAA 58.824 47.619 0.00 0.00 0.00 3.02
172 173 1.847328 TGGTTAGACGGATCAGCAGA 58.153 50.000 0.00 0.00 0.00 4.26
173 174 2.271800 GTTGGTTAGACGGATCAGCAG 58.728 52.381 0.00 0.00 0.00 4.24
174 175 1.621317 TGTTGGTTAGACGGATCAGCA 59.379 47.619 0.00 0.00 0.00 4.41
175 176 2.380084 TGTTGGTTAGACGGATCAGC 57.620 50.000 0.00 0.00 0.00 4.26
176 177 3.262420 CCTTGTTGGTTAGACGGATCAG 58.738 50.000 0.00 0.00 0.00 2.90
177 178 2.614481 GCCTTGTTGGTTAGACGGATCA 60.614 50.000 0.00 0.00 38.35 2.92
178 179 2.007608 GCCTTGTTGGTTAGACGGATC 58.992 52.381 0.00 0.00 38.35 3.36
179 180 1.339727 GGCCTTGTTGGTTAGACGGAT 60.340 52.381 0.00 0.00 38.35 4.18
180 181 0.035739 GGCCTTGTTGGTTAGACGGA 59.964 55.000 0.00 0.00 38.35 4.69
181 182 0.250553 TGGCCTTGTTGGTTAGACGG 60.251 55.000 3.32 0.00 38.35 4.79
182 183 1.600023 TTGGCCTTGTTGGTTAGACG 58.400 50.000 3.32 0.00 38.35 4.18
183 184 4.116961 GTTTTTGGCCTTGTTGGTTAGAC 58.883 43.478 3.32 0.00 38.35 2.59
184 185 3.769844 TGTTTTTGGCCTTGTTGGTTAGA 59.230 39.130 3.32 0.00 38.35 2.10
185 186 4.130286 TGTTTTTGGCCTTGTTGGTTAG 57.870 40.909 3.32 0.00 38.35 2.34
186 187 4.407296 AGATGTTTTTGGCCTTGTTGGTTA 59.593 37.500 3.32 0.00 38.35 2.85
187 188 3.199727 AGATGTTTTTGGCCTTGTTGGTT 59.800 39.130 3.32 0.00 38.35 3.67
188 189 2.771372 AGATGTTTTTGGCCTTGTTGGT 59.229 40.909 3.32 0.00 38.35 3.67
189 190 3.392882 GAGATGTTTTTGGCCTTGTTGG 58.607 45.455 3.32 0.00 39.35 3.77
190 191 3.392882 GGAGATGTTTTTGGCCTTGTTG 58.607 45.455 3.32 0.00 0.00 3.33
191 192 2.368548 GGGAGATGTTTTTGGCCTTGTT 59.631 45.455 3.32 0.00 0.00 2.83
192 193 1.970640 GGGAGATGTTTTTGGCCTTGT 59.029 47.619 3.32 0.00 0.00 3.16
193 194 1.067635 CGGGAGATGTTTTTGGCCTTG 60.068 52.381 3.32 0.00 0.00 3.61
194 195 1.256812 CGGGAGATGTTTTTGGCCTT 58.743 50.000 3.32 0.00 0.00 4.35
195 196 1.250840 GCGGGAGATGTTTTTGGCCT 61.251 55.000 3.32 0.00 0.00 5.19
196 197 1.215382 GCGGGAGATGTTTTTGGCC 59.785 57.895 0.00 0.00 0.00 5.36
197 198 1.154035 CGCGGGAGATGTTTTTGGC 60.154 57.895 0.00 0.00 0.00 4.52
198 199 1.506262 CCGCGGGAGATGTTTTTGG 59.494 57.895 20.10 0.00 0.00 3.28
199 200 1.506262 CCCGCGGGAGATGTTTTTG 59.494 57.895 41.82 6.81 37.50 2.44
200 201 3.996614 CCCGCGGGAGATGTTTTT 58.003 55.556 41.82 0.00 37.50 1.94
214 215 2.854300 ATTGGGCCTAGGCAAACCCG 62.854 60.000 34.09 0.00 46.02 5.28
215 216 1.001631 ATTGGGCCTAGGCAAACCC 59.998 57.895 34.09 25.19 44.11 4.11
216 217 1.960040 GCATTGGGCCTAGGCAAACC 61.960 60.000 34.09 25.55 44.11 3.27
217 218 1.257055 TGCATTGGGCCTAGGCAAAC 61.257 55.000 34.09 23.04 43.89 2.93
218 219 0.543883 TTGCATTGGGCCTAGGCAAA 60.544 50.000 31.58 26.42 41.05 3.68
219 220 0.543883 TTTGCATTGGGCCTAGGCAA 60.544 50.000 30.45 30.45 43.89 4.52
220 221 1.078166 TTTGCATTGGGCCTAGGCA 59.922 52.632 34.09 22.62 43.89 4.75
221 222 0.972471 AGTTTGCATTGGGCCTAGGC 60.972 55.000 26.55 26.55 43.89 3.93
222 223 2.024414 GTAGTTTGCATTGGGCCTAGG 58.976 52.381 3.67 3.67 43.89 3.02
223 224 2.024414 GGTAGTTTGCATTGGGCCTAG 58.976 52.381 4.53 0.00 43.89 3.02
224 225 1.356059 TGGTAGTTTGCATTGGGCCTA 59.644 47.619 4.53 0.00 43.89 3.93
225 226 0.114168 TGGTAGTTTGCATTGGGCCT 59.886 50.000 4.53 0.00 43.89 5.19
226 227 0.972883 TTGGTAGTTTGCATTGGGCC 59.027 50.000 0.00 0.00 43.89 5.80
227 228 2.412870 GTTTGGTAGTTTGCATTGGGC 58.587 47.619 0.00 0.00 45.13 5.36
228 229 2.671596 CGTTTGGTAGTTTGCATTGGG 58.328 47.619 0.00 0.00 0.00 4.12
229 230 2.058057 GCGTTTGGTAGTTTGCATTGG 58.942 47.619 0.00 0.00 0.00 3.16
230 231 1.713404 CGCGTTTGGTAGTTTGCATTG 59.287 47.619 0.00 0.00 0.00 2.82
231 232 1.335496 ACGCGTTTGGTAGTTTGCATT 59.665 42.857 5.58 0.00 0.00 3.56
232 233 0.948678 ACGCGTTTGGTAGTTTGCAT 59.051 45.000 5.58 0.00 0.00 3.96
233 234 1.261089 GTACGCGTTTGGTAGTTTGCA 59.739 47.619 20.78 0.00 0.00 4.08
234 235 1.528161 AGTACGCGTTTGGTAGTTTGC 59.472 47.619 20.78 0.00 0.00 3.68
235 236 4.970472 TTAGTACGCGTTTGGTAGTTTG 57.030 40.909 20.78 0.00 0.00 2.93
236 237 7.090173 TCTTATTAGTACGCGTTTGGTAGTTT 58.910 34.615 20.78 0.00 0.00 2.66
237 238 6.620678 TCTTATTAGTACGCGTTTGGTAGTT 58.379 36.000 20.78 0.00 0.00 2.24
238 239 6.194796 TCTTATTAGTACGCGTTTGGTAGT 57.805 37.500 20.78 3.91 0.00 2.73
239 240 8.961294 ATATCTTATTAGTACGCGTTTGGTAG 57.039 34.615 20.78 7.10 0.00 3.18
240 241 8.567104 TGATATCTTATTAGTACGCGTTTGGTA 58.433 33.333 20.78 0.00 0.00 3.25
241 242 7.428020 TGATATCTTATTAGTACGCGTTTGGT 58.572 34.615 20.78 1.84 0.00 3.67
242 243 7.862741 TGATATCTTATTAGTACGCGTTTGG 57.137 36.000 20.78 0.00 0.00 3.28
243 244 8.425491 CCTTGATATCTTATTAGTACGCGTTTG 58.575 37.037 20.78 0.00 0.00 2.93
244 245 7.115947 GCCTTGATATCTTATTAGTACGCGTTT 59.884 37.037 20.78 9.38 0.00 3.60
245 246 6.585322 GCCTTGATATCTTATTAGTACGCGTT 59.415 38.462 20.78 1.73 0.00 4.84
246 247 6.091437 GCCTTGATATCTTATTAGTACGCGT 58.909 40.000 19.17 19.17 0.00 6.01
247 248 6.090783 TGCCTTGATATCTTATTAGTACGCG 58.909 40.000 3.53 3.53 0.00 6.01
248 249 7.010552 CCATGCCTTGATATCTTATTAGTACGC 59.989 40.741 3.98 0.00 0.00 4.42
249 250 7.492669 CCCATGCCTTGATATCTTATTAGTACG 59.507 40.741 3.98 0.00 0.00 3.67
250 251 7.281100 GCCCATGCCTTGATATCTTATTAGTAC 59.719 40.741 3.98 0.00 0.00 2.73
251 252 7.037658 TGCCCATGCCTTGATATCTTATTAGTA 60.038 37.037 3.98 0.00 36.33 1.82
252 253 6.183347 GCCCATGCCTTGATATCTTATTAGT 58.817 40.000 3.98 0.00 0.00 2.24
253 254 6.182627 TGCCCATGCCTTGATATCTTATTAG 58.817 40.000 3.98 0.00 36.33 1.73
254 255 6.138391 TGCCCATGCCTTGATATCTTATTA 57.862 37.500 3.98 0.00 36.33 0.98
255 256 5.001833 TGCCCATGCCTTGATATCTTATT 57.998 39.130 3.98 0.00 36.33 1.40
256 257 4.662966 TGCCCATGCCTTGATATCTTAT 57.337 40.909 3.98 0.00 36.33 1.73
257 258 4.144297 GTTGCCCATGCCTTGATATCTTA 58.856 43.478 3.98 0.00 36.33 2.10
258 259 2.961062 GTTGCCCATGCCTTGATATCTT 59.039 45.455 3.98 0.00 36.33 2.40
259 260 2.091720 TGTTGCCCATGCCTTGATATCT 60.092 45.455 3.98 0.00 36.33 1.98
260 261 2.295349 CTGTTGCCCATGCCTTGATATC 59.705 50.000 0.00 0.00 36.33 1.63
261 262 2.313317 CTGTTGCCCATGCCTTGATAT 58.687 47.619 0.00 0.00 36.33 1.63
262 263 1.005805 ACTGTTGCCCATGCCTTGATA 59.994 47.619 0.00 0.00 36.33 2.15
263 264 0.251922 ACTGTTGCCCATGCCTTGAT 60.252 50.000 0.00 0.00 36.33 2.57
264 265 0.403655 TACTGTTGCCCATGCCTTGA 59.596 50.000 0.00 0.00 36.33 3.02
265 266 1.477553 ATACTGTTGCCCATGCCTTG 58.522 50.000 0.00 0.00 36.33 3.61
561 925 4.614036 AAAAGGGCCGTGGGGGTG 62.614 66.667 0.00 0.00 38.44 4.61
562 926 4.295199 GAAAAGGGCCGTGGGGGT 62.295 66.667 0.00 0.00 38.44 4.95
563 927 2.552231 CTAGAAAAGGGCCGTGGGGG 62.552 65.000 0.00 0.00 39.58 5.40
564 928 1.077716 CTAGAAAAGGGCCGTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
565 929 0.037734 AACTAGAAAAGGGCCGTGGG 59.962 55.000 0.00 0.00 0.00 4.61
566 930 1.450025 GAACTAGAAAAGGGCCGTGG 58.550 55.000 0.00 0.00 0.00 4.94
567 931 1.076332 CGAACTAGAAAAGGGCCGTG 58.924 55.000 0.00 0.00 0.00 4.94
568 932 0.683412 ACGAACTAGAAAAGGGCCGT 59.317 50.000 0.00 0.00 0.00 5.68
569 933 1.076332 CACGAACTAGAAAAGGGCCG 58.924 55.000 0.00 0.00 0.00 6.13
615 979 5.874810 GGTTTTCTGGATTTGATTTTAGGGC 59.125 40.000 0.00 0.00 0.00 5.19
624 988 2.091055 TGGGTGGGTTTTCTGGATTTGA 60.091 45.455 0.00 0.00 0.00 2.69
680 1053 0.386113 GGATCTGACACGTAGAGGCC 59.614 60.000 0.00 0.00 0.00 5.19
1081 1455 3.138930 GATAGAGGACGCGGCAGCA 62.139 63.158 17.00 0.00 45.49 4.41
1093 1467 1.655329 GGCGACTGGACGGATAGAG 59.345 63.158 0.00 0.00 0.00 2.43
1151 1525 3.343788 CTCGGACTCTCCACGGTGC 62.344 68.421 1.68 0.00 35.91 5.01
1154 1528 0.464735 ATCTCTCGGACTCTCCACGG 60.465 60.000 0.00 0.00 35.91 4.94
1157 1531 0.179043 CGGATCTCTCGGACTCTCCA 60.179 60.000 0.00 0.00 35.91 3.86
1158 1532 0.107081 TCGGATCTCTCGGACTCTCC 59.893 60.000 0.00 0.00 0.00 3.71
1160 1534 0.107831 CCTCGGATCTCTCGGACTCT 59.892 60.000 0.00 0.00 0.00 3.24
1162 1536 0.464735 CACCTCGGATCTCTCGGACT 60.465 60.000 0.00 0.00 0.00 3.85
1164 1538 1.152943 CCACCTCGGATCTCTCGGA 60.153 63.158 0.00 0.00 36.56 4.55
1165 1539 2.196925 CCCACCTCGGATCTCTCGG 61.197 68.421 0.00 0.00 36.56 4.63
1166 1540 2.196925 CCCCACCTCGGATCTCTCG 61.197 68.421 0.00 0.00 36.56 4.04
1168 1542 1.231641 CTCCCCACCTCGGATCTCT 59.768 63.158 0.00 0.00 36.56 3.10
1170 1544 1.886730 TTCCTCCCCACCTCGGATCT 61.887 60.000 0.00 0.00 36.56 2.75
1171 1545 1.382695 TTCCTCCCCACCTCGGATC 60.383 63.158 0.00 0.00 36.56 3.36
1172 1546 1.383248 CTTCCTCCCCACCTCGGAT 60.383 63.158 0.00 0.00 36.56 4.18
1173 1547 2.038975 CTTCCTCCCCACCTCGGA 59.961 66.667 0.00 0.00 36.56 4.55
1174 1548 3.083997 CCTTCCTCCCCACCTCGG 61.084 72.222 0.00 0.00 0.00 4.63
1175 1549 2.038975 TCCTTCCTCCCCACCTCG 59.961 66.667 0.00 0.00 0.00 4.63
1177 1551 1.807771 TACGTCCTTCCTCCCCACCT 61.808 60.000 0.00 0.00 0.00 4.00
1180 1564 0.033405 CTCTACGTCCTTCCTCCCCA 60.033 60.000 0.00 0.00 0.00 4.96
1187 1571 2.278013 CCGCGCTCTACGTCCTTC 60.278 66.667 5.56 0.00 46.11 3.46
1188 1572 2.749044 TCCGCGCTCTACGTCCTT 60.749 61.111 5.56 0.00 46.11 3.36
1355 1750 2.835895 GGAGGGTCGGGAGAGAGC 60.836 72.222 0.00 0.00 41.26 4.09
1356 1751 2.123640 GGGAGGGTCGGGAGAGAG 60.124 72.222 0.00 0.00 41.26 3.20
1357 1752 4.124943 CGGGAGGGTCGGGAGAGA 62.125 72.222 0.00 0.00 41.26 3.10
1365 1760 2.838693 GAGTAGGGCGGGAGGGTC 60.839 72.222 0.00 0.00 0.00 4.46
1470 1876 1.078918 CAGCCATCGGAGCAACAGA 60.079 57.895 0.00 0.00 0.00 3.41
1531 1937 2.390599 CCACCATGCGAGAACACGG 61.391 63.158 0.00 0.00 0.00 4.94
1594 2000 1.339342 GCGGGTAGCCTTTCCAAAGTA 60.339 52.381 9.73 0.00 40.81 2.24
1656 2065 9.160496 CATCTAGCAGGAATATCAGTAAAATCC 57.840 37.037 0.00 0.00 0.00 3.01
1657 2066 9.717942 ACATCTAGCAGGAATATCAGTAAAATC 57.282 33.333 0.00 0.00 0.00 2.17
1659 2068 8.486210 ACACATCTAGCAGGAATATCAGTAAAA 58.514 33.333 0.00 0.00 0.00 1.52
1666 2081 5.474578 TGGACACATCTAGCAGGAATATC 57.525 43.478 0.00 0.00 0.00 1.63
1689 2104 2.180159 TAGTTCCCCTTGGTCTGCGC 62.180 60.000 0.00 0.00 0.00 6.09
1698 2113 2.454538 CACTCTACCGTAGTTCCCCTT 58.545 52.381 5.46 0.00 0.00 3.95
1700 2115 0.459078 GCACTCTACCGTAGTTCCCC 59.541 60.000 5.46 0.00 0.00 4.81
1703 2118 1.198637 ACACGCACTCTACCGTAGTTC 59.801 52.381 5.46 0.00 35.69 3.01
1706 2121 0.800631 TCACACGCACTCTACCGTAG 59.199 55.000 0.00 0.00 35.69 3.51
1709 2125 0.992072 CAATCACACGCACTCTACCG 59.008 55.000 0.00 0.00 0.00 4.02
1712 2128 4.994217 TGAATTTCAATCACACGCACTCTA 59.006 37.500 0.00 0.00 0.00 2.43
1720 2136 7.380602 CCAACTCTCTTTGAATTTCAATCACAC 59.619 37.037 12.39 0.00 36.11 3.82
1725 2141 6.409524 TGCCAACTCTCTTTGAATTTCAAT 57.590 33.333 12.39 0.00 36.11 2.57
1728 2144 8.299570 TCTTATTGCCAACTCTCTTTGAATTTC 58.700 33.333 0.00 0.00 0.00 2.17
1731 2147 7.951347 ATCTTATTGCCAACTCTCTTTGAAT 57.049 32.000 0.00 0.00 0.00 2.57
1733 2149 6.349611 GCAATCTTATTGCCAACTCTCTTTGA 60.350 38.462 12.53 0.00 39.38 2.69
1747 2163 4.908156 GCTAACATGCGAGCAATCTTATTG 59.092 41.667 13.21 0.00 38.62 1.90
1752 2168 2.208431 GAGCTAACATGCGAGCAATCT 58.792 47.619 18.71 1.32 41.36 2.40
1756 2172 1.078709 GTTGAGCTAACATGCGAGCA 58.921 50.000 18.71 0.00 41.36 4.26
1775 2191 4.100808 GCTAATATCATCCCTCCTGGCTAG 59.899 50.000 0.00 0.00 0.00 3.42
1787 2203 4.179926 TCCACTCTGCGCTAATATCATC 57.820 45.455 9.73 0.00 0.00 2.92
1793 2209 1.134280 AGCATTCCACTCTGCGCTAAT 60.134 47.619 9.73 0.00 43.17 1.73
1801 2217 1.338200 GGAACACGAGCATTCCACTCT 60.338 52.381 0.00 0.00 43.40 3.24
1862 2287 2.014128 ACTCCCACACAAAACAACTCG 58.986 47.619 0.00 0.00 0.00 4.18
1863 2288 2.099098 CCACTCCCACACAAAACAACTC 59.901 50.000 0.00 0.00 0.00 3.01
1869 2294 1.040339 GGCACCACTCCCACACAAAA 61.040 55.000 0.00 0.00 0.00 2.44
1877 2302 1.194781 TCTTCTCAGGCACCACTCCC 61.195 60.000 0.00 0.00 0.00 4.30
1878 2303 0.908198 ATCTTCTCAGGCACCACTCC 59.092 55.000 0.00 0.00 0.00 3.85
1888 2313 2.500910 ACTCCCTGCTGAATCTTCTCAG 59.499 50.000 0.00 0.00 44.82 3.35
1896 2321 6.420913 ACGTAAATATACTCCCTGCTGAAT 57.579 37.500 0.00 0.00 0.00 2.57
1897 2322 5.864418 ACGTAAATATACTCCCTGCTGAA 57.136 39.130 0.00 0.00 0.00 3.02
1898 2323 6.066690 AGTACGTAAATATACTCCCTGCTGA 58.933 40.000 0.00 0.00 0.00 4.26
1899 2324 6.328641 AGTACGTAAATATACTCCCTGCTG 57.671 41.667 0.00 0.00 0.00 4.41
1900 2325 6.293845 CGAAGTACGTAAATATACTCCCTGCT 60.294 42.308 0.00 0.00 37.22 4.24
1901 2326 5.855395 CGAAGTACGTAAATATACTCCCTGC 59.145 44.000 0.00 0.00 37.22 4.85
1902 2327 7.041508 ACTCGAAGTACGTAAATATACTCCCTG 60.042 40.741 0.00 0.00 43.13 4.45
1936 2361 3.924507 GGTGCAAGCCCATGGTAG 58.075 61.111 11.73 0.00 0.00 3.18
1955 2381 6.215636 AGAGTCACCAACTATAAGTGGGATTT 59.784 38.462 7.50 0.00 42.14 2.17
1964 2390 8.824756 AATCTCTACAGAGTCACCAACTATAA 57.175 34.615 6.16 0.00 42.60 0.98
2016 2442 2.032808 GCTCCGCCGTATGAGAAATTTC 60.033 50.000 10.33 10.33 0.00 2.17
2064 2498 4.579753 TCATTTGACACATGAGCAACAGAA 59.420 37.500 0.00 0.00 0.00 3.02
2066 2500 4.492791 TCATTTGACACATGAGCAACAG 57.507 40.909 0.00 0.00 0.00 3.16
2087 2521 6.385759 TCATAAGGTGTACTGTGTGGGAATAT 59.614 38.462 0.00 0.00 0.00 1.28
2089 2523 4.534500 TCATAAGGTGTACTGTGTGGGAAT 59.466 41.667 0.00 0.00 0.00 3.01
2093 2527 4.832248 ACATCATAAGGTGTACTGTGTGG 58.168 43.478 0.00 0.00 0.00 4.17
2094 2528 6.042777 CCTACATCATAAGGTGTACTGTGTG 58.957 44.000 0.00 0.00 0.00 3.82
2103 2677 4.122776 GTCACAGCCTACATCATAAGGTG 58.877 47.826 0.00 0.00 35.16 4.00
2161 2735 8.857098 ACTGCTGATTTTGAATAGCATGATATT 58.143 29.630 15.81 15.81 44.27 1.28
2253 2829 7.718753 TCCACCTCGGTACATTTAAAGTTTAAA 59.281 33.333 20.17 20.17 35.57 1.52
2254 2830 7.173047 GTCCACCTCGGTACATTTAAAGTTTAA 59.827 37.037 3.88 3.88 35.57 1.52
2255 2831 6.650390 GTCCACCTCGGTACATTTAAAGTTTA 59.350 38.462 0.00 0.00 35.57 2.01
2256 2832 5.471116 GTCCACCTCGGTACATTTAAAGTTT 59.529 40.000 0.00 0.00 35.57 2.66
2257 2833 4.999311 GTCCACCTCGGTACATTTAAAGTT 59.001 41.667 0.00 0.00 35.57 2.66
2258 2834 4.572909 GTCCACCTCGGTACATTTAAAGT 58.427 43.478 0.00 0.00 35.57 2.66
2259 2835 3.615496 CGTCCACCTCGGTACATTTAAAG 59.385 47.826 0.00 0.00 35.57 1.85
2280 2856 2.015736 AGCTTTATCAGACAGCACCG 57.984 50.000 0.00 0.00 35.88 4.94
2282 2858 5.837586 GCTATAGCTTTATCAGACAGCAC 57.162 43.478 17.75 0.00 35.88 4.40
2341 2917 3.721706 GGACCTCAGCCCACCCAG 61.722 72.222 0.00 0.00 0.00 4.45
2493 3070 6.423905 CGGACAGATACTGTAATTAATGGGTG 59.576 42.308 4.36 0.00 45.44 4.61
2507 3084 2.171840 AGCACAGAACGGACAGATACT 58.828 47.619 0.00 0.00 0.00 2.12
2508 3085 2.656560 AGCACAGAACGGACAGATAC 57.343 50.000 0.00 0.00 0.00 2.24
2594 3171 9.236006 ACAATTGTTATAAGATGATCATAGGCC 57.764 33.333 8.54 0.00 0.00 5.19
2615 3192 6.981722 AGGAAAGAAAAACGAGCATACAATT 58.018 32.000 0.00 0.00 0.00 2.32
2728 3305 4.903045 ACTCTCTCCGTCCCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
2785 3425 4.136796 TCAGCTTGCATGAGTTTTGTAGT 58.863 39.130 3.33 0.00 0.00 2.73
2802 3442 3.370840 TCTTATGTTGGGCAATCAGCT 57.629 42.857 0.00 0.00 44.79 4.24
2886 3570 9.772973 AGACAACAGTTTCATATACAACTACAA 57.227 29.630 0.00 0.00 31.78 2.41
2899 3583 4.217334 TGCTTTGACAAGACAACAGTTTCA 59.783 37.500 0.00 0.00 30.57 2.69
2931 3615 9.349713 ACCAAAACAGTATTGTCTTCTAATCAA 57.650 29.630 0.00 0.00 36.23 2.57
2956 3640 7.014422 AGTCCTGGTAGTATACTTGCTGATTAC 59.986 40.741 11.40 0.06 42.51 1.89
2976 3660 2.962421 GGAGGGATCACTTCTAGTCCTG 59.038 54.545 0.00 0.00 0.00 3.86
2977 3661 2.587777 TGGAGGGATCACTTCTAGTCCT 59.412 50.000 4.50 0.00 0.00 3.85
3064 3748 3.654414 CTCTAAAAACGTCTGCTCCAGT 58.346 45.455 0.00 0.00 32.61 4.00
3081 3765 2.103601 GGTAACGGGGCAAATAGCTCTA 59.896 50.000 0.00 0.00 45.61 2.43
3087 3771 3.256136 CACTTTTGGTAACGGGGCAAATA 59.744 43.478 0.00 0.00 42.51 1.40
3094 3778 2.567985 AGACACACTTTTGGTAACGGG 58.432 47.619 0.00 0.00 42.51 5.28
3108 3792 8.480501 AGTTCTGTAAAAGGTTAAGTAGACACA 58.519 33.333 0.00 0.00 0.00 3.72
3119 3803 6.463995 TCATTTGCAGTTCTGTAAAAGGTT 57.536 33.333 16.90 2.01 0.00 3.50
3723 4407 9.851686 TCCTATGAAAACATAAGTAGCATCATT 57.148 29.630 0.00 0.00 0.00 2.57
3724 4408 9.851686 TTCCTATGAAAACATAAGTAGCATCAT 57.148 29.630 0.00 0.00 0.00 2.45
3726 4410 9.547753 TCTTCCTATGAAAACATAAGTAGCATC 57.452 33.333 0.00 0.00 0.00 3.91
3727 4411 9.905713 TTCTTCCTATGAAAACATAAGTAGCAT 57.094 29.630 0.00 0.00 0.00 3.79
3728 4412 9.905713 ATTCTTCCTATGAAAACATAAGTAGCA 57.094 29.630 0.00 0.00 0.00 3.49
3733 4417 9.674824 GCATCATTCTTCCTATGAAAACATAAG 57.325 33.333 0.00 0.00 35.77 1.73
3747 4431 6.543831 ACCAACATAAGTAGCATCATTCTTCC 59.456 38.462 0.00 0.00 0.00 3.46
3824 4509 2.309613 ACATTTTGCTCCAGCTTGACA 58.690 42.857 0.00 0.00 42.66 3.58
3846 4531 9.932207 TCATTTGAATTTACAAATCAAGAGCAT 57.068 25.926 0.00 0.00 45.00 3.79
4102 4979 7.907841 TGTTACACATATGTACCTGGAGTAT 57.092 36.000 8.32 0.00 41.12 2.12
4177 5054 8.144478 AGAACTTTCACATATATCACAGCGTAT 58.856 33.333 0.00 0.00 0.00 3.06
4334 5212 4.201980 CCAACATGAACAGCCATATCACAG 60.202 45.833 0.00 0.00 0.00 3.66
4467 5345 8.593492 ACTAATCAAAATTTCAAACCTCAAGC 57.407 30.769 0.00 0.00 0.00 4.01
4545 5423 1.144913 TGGTCCCTTGGGTTTTCAGAG 59.855 52.381 5.51 0.00 0.00 3.35
4572 5450 1.006832 CCTTTGGTACGGAATGAGCG 58.993 55.000 0.00 0.00 0.00 5.03
4581 5459 2.095263 CACCATTTGCTCCTTTGGTACG 60.095 50.000 0.00 0.00 40.44 3.67
4585 5463 2.289010 GGTTCACCATTTGCTCCTTTGG 60.289 50.000 0.00 0.00 35.64 3.28
4754 5632 4.815269 ACACATGAGACAAGCTACTTCTC 58.185 43.478 0.00 10.77 0.00 2.87
4762 5640 3.057946 GGGAAAGAACACATGAGACAAGC 60.058 47.826 0.00 0.00 0.00 4.01
4827 5705 3.584406 ACTCCATGAGTCTGGATTGTCAA 59.416 43.478 10.56 0.00 44.23 3.18
4927 5806 3.458189 ACATTCCGAGATTCCGACATTC 58.542 45.455 0.00 0.00 0.00 2.67
5021 5900 2.290641 CCTGCAACGATACATTTAGCCC 59.709 50.000 0.00 0.00 0.00 5.19
5211 6090 1.875514 TCTGACATTCACAGCAGTTGC 59.124 47.619 0.00 0.00 42.49 4.17
5244 6123 3.005367 CGTTATGTCAAAAGCACCCCTTT 59.995 43.478 0.00 0.00 45.49 3.11
5249 6128 3.058224 AGCTTCGTTATGTCAAAAGCACC 60.058 43.478 7.98 0.00 43.65 5.01
5255 6134 2.742053 GCTCCAGCTTCGTTATGTCAAA 59.258 45.455 0.00 0.00 38.21 2.69
5257 6136 1.275010 TGCTCCAGCTTCGTTATGTCA 59.725 47.619 0.00 0.00 42.66 3.58
5258 6137 2.010145 TGCTCCAGCTTCGTTATGTC 57.990 50.000 0.00 0.00 42.66 3.06
5259 6138 2.283298 CATGCTCCAGCTTCGTTATGT 58.717 47.619 0.00 0.00 42.66 2.29
5260 6139 2.031314 CACATGCTCCAGCTTCGTTATG 59.969 50.000 0.00 0.00 42.66 1.90
5261 6140 2.283298 CACATGCTCCAGCTTCGTTAT 58.717 47.619 0.00 0.00 42.66 1.89
5263 6142 0.250467 ACACATGCTCCAGCTTCGTT 60.250 50.000 0.00 0.00 42.66 3.85
5264 6143 0.250467 AACACATGCTCCAGCTTCGT 60.250 50.000 0.00 0.00 42.66 3.85
5266 6145 0.524862 CCAACACATGCTCCAGCTTC 59.475 55.000 0.00 0.00 42.66 3.86
5267 6146 1.530013 GCCAACACATGCTCCAGCTT 61.530 55.000 0.00 0.00 42.66 3.74
5268 6147 1.975407 GCCAACACATGCTCCAGCT 60.975 57.895 0.00 0.00 42.66 4.24
5269 6148 0.677731 TAGCCAACACATGCTCCAGC 60.678 55.000 0.00 0.00 39.00 4.85
5270 6149 1.674441 CATAGCCAACACATGCTCCAG 59.326 52.381 0.00 0.00 39.00 3.86
5271 6150 1.281577 TCATAGCCAACACATGCTCCA 59.718 47.619 0.00 0.00 39.00 3.86
5276 6174 3.003378 CAGATGCTCATAGCCAACACATG 59.997 47.826 0.00 0.00 41.51 3.21
5296 6194 2.064014 GTTACGTCGAAAAGGACCCAG 58.936 52.381 0.00 0.00 33.30 4.45
5299 6197 2.050477 TCGTTACGTCGAAAAGGACC 57.950 50.000 4.24 0.00 36.89 4.46
5301 6199 2.053627 GCTTCGTTACGTCGAAAAGGA 58.946 47.619 12.38 1.43 46.55 3.36
5304 6202 0.777631 CGGCTTCGTTACGTCGAAAA 59.222 50.000 12.38 0.00 46.55 2.29
5520 6575 1.160137 CAGAAGCTGGGAAGAAACCG 58.840 55.000 0.00 0.00 0.00 4.44
5595 6650 4.624882 GTCGCATGATTTTTGGTTTGCATA 59.375 37.500 0.00 0.00 0.00 3.14
5596 6651 3.432933 GTCGCATGATTTTTGGTTTGCAT 59.567 39.130 0.00 0.00 0.00 3.96
5611 6666 0.533755 GAGAATCAGGGGGTCGCATG 60.534 60.000 0.00 0.00 33.17 4.06
5620 6675 4.940654 GGAAACTTCTTCAGAGAATCAGGG 59.059 45.833 0.00 0.00 40.93 4.45
5677 6734 2.318908 AGAGGATCATGCCAGAGAGAC 58.681 52.381 0.00 0.00 37.82 3.36
5757 6814 4.569761 TCTTGGTAGAGATGCATACGTC 57.430 45.455 0.00 0.00 0.00 4.34
5783 6840 1.489481 ATCCTGGTCGAAGATGCTCA 58.511 50.000 0.00 0.00 40.67 4.26
5784 6841 2.611225 AATCCTGGTCGAAGATGCTC 57.389 50.000 0.00 0.00 40.67 4.26
5785 6842 4.696479 ATAAATCCTGGTCGAAGATGCT 57.304 40.909 0.00 0.00 40.67 3.79
5855 6912 4.935205 TGTGTGACAAATATCTCTTTCGGG 59.065 41.667 0.00 0.00 0.00 5.14
5861 6918 5.812642 GGAACGATGTGTGACAAATATCTCT 59.187 40.000 1.39 0.00 0.00 3.10
5962 7027 1.002773 GATAGTGTGTCCGGTTTGGGT 59.997 52.381 0.00 0.00 38.76 4.51
5964 7029 1.734163 GGATAGTGTGTCCGGTTTGG 58.266 55.000 0.00 0.00 40.09 3.28
5985 7050 2.680352 GGTCTCCCAGTCCGCAGA 60.680 66.667 0.00 0.00 0.00 4.26
5994 7059 2.455960 ATCCGTGGACTGGTCTCCCA 62.456 60.000 0.00 0.00 38.87 4.37
5998 7063 1.035932 CCGTATCCGTGGACTGGTCT 61.036 60.000 0.00 0.00 0.00 3.85
6026 7091 0.918799 TGTGGCTATGGGTGGATGGT 60.919 55.000 0.00 0.00 0.00 3.55
6034 7099 1.024271 CGGACATTTGTGGCTATGGG 58.976 55.000 0.00 0.00 0.00 4.00
6232 7326 3.712907 ATGGGGAACGGGTGTCGG 61.713 66.667 0.00 0.00 44.45 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.