Multiple sequence alignment - TraesCS5D01G323100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G323100 chr5D 100.000 2881 0 0 1 2881 415274274 415271394 0.000000e+00 5321
1 TraesCS5D01G323100 chr5A 89.764 2755 82 68 28 2679 527906763 527904106 0.000000e+00 3341
2 TraesCS5D01G323100 chr5B 93.975 2141 65 20 509 2632 501465488 501463395 0.000000e+00 3181
3 TraesCS5D01G323100 chr5B 87.045 494 27 18 28 490 501466558 501466071 9.150000e-145 523
4 TraesCS5D01G323100 chr5B 89.175 194 15 4 2691 2881 501463393 501463203 1.330000e-58 237
5 TraesCS5D01G323100 chr2D 81.008 258 42 5 1073 1325 492676515 492676770 6.300000e-47 198
6 TraesCS5D01G323100 chr2B 81.008 258 42 5 1073 1325 578605290 578605545 6.300000e-47 198
7 TraesCS5D01G323100 chr2A 82.684 231 31 7 1073 1297 637984702 637984929 2.260000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G323100 chr5D 415271394 415274274 2880 True 5321.000000 5321 100.000 1 2881 1 chr5D.!!$R1 2880
1 TraesCS5D01G323100 chr5A 527904106 527906763 2657 True 3341.000000 3341 89.764 28 2679 1 chr5A.!!$R1 2651
2 TraesCS5D01G323100 chr5B 501463203 501466558 3355 True 1313.666667 3181 90.065 28 2881 3 chr5B.!!$R1 2853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.445436 GATCACTGCAAGCGTCAAGG 59.555 55.0 0.0 0.0 37.6 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2699 0.387929 CACACTGACACCGTACCACT 59.612 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.484742 AGCACAGATGATCACTGCAA 57.515 45.000 19.09 0.00 38.74 4.08
20 21 2.357075 AGCACAGATGATCACTGCAAG 58.643 47.619 19.09 13.00 38.74 4.01
21 22 1.202154 GCACAGATGATCACTGCAAGC 60.202 52.381 19.09 16.92 37.60 4.01
22 23 1.062148 CACAGATGATCACTGCAAGCG 59.938 52.381 19.09 5.60 37.60 4.68
23 24 1.338484 ACAGATGATCACTGCAAGCGT 60.338 47.619 19.09 3.07 37.60 5.07
24 25 1.326852 CAGATGATCACTGCAAGCGTC 59.673 52.381 0.00 0.00 37.60 5.19
25 26 1.066645 AGATGATCACTGCAAGCGTCA 60.067 47.619 0.00 0.00 37.60 4.35
26 27 1.733912 GATGATCACTGCAAGCGTCAA 59.266 47.619 0.00 0.00 37.60 3.18
27 28 1.150827 TGATCACTGCAAGCGTCAAG 58.849 50.000 0.00 0.00 37.60 3.02
28 29 0.445436 GATCACTGCAAGCGTCAAGG 59.555 55.000 0.00 0.00 37.60 3.61
29 30 1.580845 ATCACTGCAAGCGTCAAGGC 61.581 55.000 0.00 0.00 37.60 4.35
30 31 2.203195 ACTGCAAGCGTCAAGGCA 60.203 55.556 0.00 0.00 37.60 4.75
31 32 1.823470 ACTGCAAGCGTCAAGGCAA 60.823 52.632 0.00 0.00 37.60 4.52
32 33 1.359833 CTGCAAGCGTCAAGGCAAA 59.640 52.632 0.00 0.00 35.59 3.68
70 71 4.814294 GGCAGTACCCGAGGCACG 62.814 72.222 0.00 0.00 42.18 5.34
550 1155 1.066358 CATGTCAGGAGAAGCAGCTCA 60.066 52.381 0.00 0.00 36.62 4.26
551 1156 0.607112 TGTCAGGAGAAGCAGCTCAG 59.393 55.000 0.00 1.06 36.62 3.35
552 1157 0.740516 GTCAGGAGAAGCAGCTCAGC 60.741 60.000 0.00 0.00 36.62 4.26
553 1158 1.449956 CAGGAGAAGCAGCTCAGCC 60.450 63.158 0.00 0.00 36.62 4.85
554 1159 2.124778 GGAGAAGCAGCTCAGCCC 60.125 66.667 0.00 0.00 36.62 5.19
555 1160 2.667418 GAGAAGCAGCTCAGCCCA 59.333 61.111 0.00 0.00 35.01 5.36
556 1161 1.002868 GAGAAGCAGCTCAGCCCAA 60.003 57.895 0.00 0.00 35.01 4.12
557 1162 1.002379 AGAAGCAGCTCAGCCCAAG 60.002 57.895 0.00 0.00 34.23 3.61
558 1163 2.675772 AAGCAGCTCAGCCCAAGC 60.676 61.111 0.00 0.00 40.14 4.01
559 1164 4.737177 AGCAGCTCAGCCCAAGCC 62.737 66.667 0.00 0.00 40.75 4.35
577 1182 1.543650 GCCTAAGCCTAAGCCTAAGCC 60.544 57.143 0.00 0.00 41.25 4.35
600 1205 1.605058 TAGGTGCGCTCCCAAGTCTC 61.605 60.000 24.18 0.00 0.00 3.36
607 1212 1.394151 CTCCCAAGTCTCTCCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
868 1498 3.730761 CAGCAAGCTCGCACACCC 61.731 66.667 0.00 0.00 0.00 4.61
900 1533 3.575805 CTCCATTAGCTCCTCCTCTTCT 58.424 50.000 0.00 0.00 0.00 2.85
929 1562 1.208776 CTCCAGATCAGGTGCATGACA 59.791 52.381 3.80 0.00 30.46 3.58
980 1613 1.458017 CCTAGCTAGGTAGGGAGGGA 58.542 60.000 32.13 0.00 38.69 4.20
981 1614 1.356398 CCTAGCTAGGTAGGGAGGGAG 59.644 61.905 32.13 11.33 38.69 4.30
982 1615 1.356398 CTAGCTAGGTAGGGAGGGAGG 59.644 61.905 19.31 0.00 0.00 4.30
983 1616 1.534476 GCTAGGTAGGGAGGGAGGC 60.534 68.421 0.00 0.00 0.00 4.70
984 1617 2.026208 GCTAGGTAGGGAGGGAGGCT 62.026 65.000 0.00 0.00 0.00 4.58
1131 1764 1.374125 CGAGTCCATGTTCGCCACA 60.374 57.895 0.00 0.00 40.71 4.17
1290 1923 2.938002 GACGACTACGACGCGCTG 60.938 66.667 5.73 0.00 42.66 5.18
1346 1989 0.530870 GCGCTCCTCAACCAGGTATC 60.531 60.000 0.00 0.00 43.95 2.24
1347 1990 1.115467 CGCTCCTCAACCAGGTATCT 58.885 55.000 0.00 0.00 43.95 1.98
1348 1991 2.307768 CGCTCCTCAACCAGGTATCTA 58.692 52.381 0.00 0.00 43.95 1.98
1349 1992 2.034812 CGCTCCTCAACCAGGTATCTAC 59.965 54.545 0.00 0.00 43.95 2.59
1350 1993 2.365941 GCTCCTCAACCAGGTATCTACC 59.634 54.545 0.00 0.00 43.95 3.18
1373 2016 5.406175 CCACTATGTCTCTACTCTACTACGC 59.594 48.000 0.00 0.00 0.00 4.42
1946 2610 0.179205 GCAACAAGATCAGTGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
1950 2614 1.150827 CAAGATCAGTGCTCGCAACA 58.849 50.000 0.00 0.00 0.00 3.33
1951 2615 1.136141 CAAGATCAGTGCTCGCAACAC 60.136 52.381 0.00 0.00 38.35 3.32
1952 2616 0.033920 AGATCAGTGCTCGCAACACA 59.966 50.000 0.00 0.00 40.59 3.72
1953 2617 1.081892 GATCAGTGCTCGCAACACAT 58.918 50.000 0.00 0.00 40.59 3.21
1977 2645 0.179134 AGCACTACTGCCGATCGAAC 60.179 55.000 18.66 9.01 45.53 3.95
2022 2694 2.687370 TCGATCATATGCAACCGATGG 58.313 47.619 0.00 0.00 0.00 3.51
2023 2695 2.037121 TCGATCATATGCAACCGATGGT 59.963 45.455 0.00 0.00 37.65 3.55
2024 2696 2.158254 CGATCATATGCAACCGATGGTG 59.842 50.000 0.00 0.00 35.34 4.17
2025 2697 1.965935 TCATATGCAACCGATGGTGG 58.034 50.000 0.00 0.00 35.34 4.61
2026 2698 1.211703 TCATATGCAACCGATGGTGGT 59.788 47.619 0.00 0.00 46.67 4.16
2027 2699 2.436173 TCATATGCAACCGATGGTGGTA 59.564 45.455 0.00 0.00 42.89 3.25
2081 2758 0.833834 CCAGGTCTGTCCAGTCCAGT 60.834 60.000 12.12 0.00 38.78 4.00
2087 2764 1.536418 TGTCCAGTCCAGTCCAGGG 60.536 63.158 0.00 0.00 0.00 4.45
2094 2776 0.040499 GTCCAGTCCAGGGAGTCTCT 59.960 60.000 0.00 0.00 34.44 3.10
2149 2835 4.235372 TCTTCACCCTCTTCCTCTTCTTT 58.765 43.478 0.00 0.00 0.00 2.52
2242 2931 4.508461 AGAGATCGATCTTCAGATGCAG 57.492 45.455 27.90 0.00 37.25 4.41
2337 3047 4.081406 CTGTGATCAATTGGTTCCTTGGA 58.919 43.478 5.42 0.00 0.00 3.53
2348 3058 1.021202 TTCCTTGGAACGCAACACAG 58.979 50.000 0.00 0.00 0.00 3.66
2623 3353 2.496817 GCCGTCTAGGTCAGCCTG 59.503 66.667 0.00 0.00 46.47 4.85
2630 3360 4.202264 CCGTCTAGGTCAGCCTGAAAATAT 60.202 45.833 0.00 0.00 46.47 1.28
2631 3361 5.010719 CCGTCTAGGTCAGCCTGAAAATATA 59.989 44.000 0.00 0.00 46.47 0.86
2632 3362 6.153067 CGTCTAGGTCAGCCTGAAAATATAG 58.847 44.000 0.00 0.00 46.47 1.31
2634 3364 7.375053 GTCTAGGTCAGCCTGAAAATATAGAG 58.625 42.308 0.00 0.00 46.47 2.43
2664 3394 0.029567 GAGGTCGATCTGTGGCGTAG 59.970 60.000 0.91 0.00 0.00 3.51
2679 3409 2.963432 GCGTAGTGTAGCCTGGTTTTA 58.037 47.619 0.00 0.00 0.00 1.52
2680 3410 3.528532 GCGTAGTGTAGCCTGGTTTTAT 58.471 45.455 0.00 0.00 0.00 1.40
2681 3411 3.554731 GCGTAGTGTAGCCTGGTTTTATC 59.445 47.826 0.00 0.00 0.00 1.75
2682 3412 4.117685 CGTAGTGTAGCCTGGTTTTATCC 58.882 47.826 0.00 0.00 0.00 2.59
2683 3413 3.646736 AGTGTAGCCTGGTTTTATCCC 57.353 47.619 0.00 0.00 0.00 3.85
2684 3414 2.916934 AGTGTAGCCTGGTTTTATCCCA 59.083 45.455 0.00 0.00 0.00 4.37
2686 3416 2.298610 GTAGCCTGGTTTTATCCCAGC 58.701 52.381 0.83 0.00 46.73 4.85
2687 3417 1.002857 AGCCTGGTTTTATCCCAGCT 58.997 50.000 0.83 0.23 46.73 4.24
2688 3418 2.205342 AGCCTGGTTTTATCCCAGCTA 58.795 47.619 0.83 0.00 46.73 3.32
2689 3419 2.173569 AGCCTGGTTTTATCCCAGCTAG 59.826 50.000 0.83 0.00 46.73 3.42
2690 3420 2.092375 GCCTGGTTTTATCCCAGCTAGT 60.092 50.000 0.83 0.00 46.73 2.57
2691 3421 3.809905 CCTGGTTTTATCCCAGCTAGTC 58.190 50.000 0.83 0.00 46.73 2.59
2692 3422 3.199946 CCTGGTTTTATCCCAGCTAGTCA 59.800 47.826 0.83 0.00 46.73 3.41
2693 3423 4.141390 CCTGGTTTTATCCCAGCTAGTCAT 60.141 45.833 0.83 0.00 46.73 3.06
2694 3424 4.780815 TGGTTTTATCCCAGCTAGTCATG 58.219 43.478 0.00 0.00 0.00 3.07
2695 3425 3.565902 GGTTTTATCCCAGCTAGTCATGC 59.434 47.826 0.00 0.00 0.00 4.06
2696 3426 3.492102 TTTATCCCAGCTAGTCATGCC 57.508 47.619 0.00 0.00 0.00 4.40
2697 3427 2.405618 TATCCCAGCTAGTCATGCCT 57.594 50.000 0.00 0.00 0.00 4.75
2698 3428 1.516110 ATCCCAGCTAGTCATGCCTT 58.484 50.000 0.00 0.00 0.00 4.35
2749 3479 2.490165 CTGGGAGAGCATGGCAAAG 58.510 57.895 0.00 0.00 0.00 2.77
2755 3485 0.890542 AGAGCATGGCAAAGCGAACA 60.891 50.000 9.24 0.00 35.48 3.18
2757 3487 0.171903 AGCATGGCAAAGCGAACATC 59.828 50.000 9.24 0.00 35.48 3.06
2778 3508 9.723601 AACATCTTTTATGGCAAATAATGTTGT 57.276 25.926 12.43 8.36 34.18 3.32
2779 3509 9.723601 ACATCTTTTATGGCAAATAATGTTGTT 57.276 25.926 0.00 0.00 0.00 2.83
2853 3586 4.439305 TTTTGCCAGTATTGATGTGCTC 57.561 40.909 0.00 0.00 0.00 4.26
2864 3597 3.266510 TGATGTGCTCGCTAAAGGAAT 57.733 42.857 0.00 0.00 0.00 3.01
2867 3600 3.829886 TGTGCTCGCTAAAGGAATTTG 57.170 42.857 0.00 0.00 0.00 2.32
2874 3607 5.163713 GCTCGCTAAAGGAATTTGTCATTCT 60.164 40.000 0.00 0.00 27.74 2.40
2878 3611 3.747099 AAGGAATTTGTCATTCTCGCG 57.253 42.857 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.357075 CTTGCAGTGATCATCTGTGCT 58.643 47.619 19.67 2.19 35.11 4.40
4 5 1.326852 GACGCTTGCAGTGATCATCTG 59.673 52.381 16.40 16.40 36.18 2.90
6 7 1.362768 TGACGCTTGCAGTGATCATC 58.637 50.000 0.00 0.00 0.00 2.92
7 8 1.736126 CTTGACGCTTGCAGTGATCAT 59.264 47.619 0.00 0.00 0.00 2.45
8 9 1.150827 CTTGACGCTTGCAGTGATCA 58.849 50.000 0.00 0.00 0.00 2.92
9 10 0.445436 CCTTGACGCTTGCAGTGATC 59.555 55.000 0.00 0.00 0.00 2.92
10 11 1.580845 GCCTTGACGCTTGCAGTGAT 61.581 55.000 0.00 0.00 0.00 3.06
11 12 2.253758 GCCTTGACGCTTGCAGTGA 61.254 57.895 0.00 0.00 0.00 3.41
12 13 2.062361 TTGCCTTGACGCTTGCAGTG 62.062 55.000 0.00 0.00 34.81 3.66
13 14 1.383456 TTTGCCTTGACGCTTGCAGT 61.383 50.000 0.00 0.00 34.81 4.40
14 15 0.662374 CTTTGCCTTGACGCTTGCAG 60.662 55.000 0.00 0.00 34.81 4.41
15 16 1.100463 TCTTTGCCTTGACGCTTGCA 61.100 50.000 0.00 0.00 0.00 4.08
16 17 0.242017 ATCTTTGCCTTGACGCTTGC 59.758 50.000 0.00 0.00 0.00 4.01
17 18 2.712057 AATCTTTGCCTTGACGCTTG 57.288 45.000 0.00 0.00 0.00 4.01
18 19 2.622942 TCAAATCTTTGCCTTGACGCTT 59.377 40.909 0.00 0.00 38.05 4.68
19 20 2.229792 TCAAATCTTTGCCTTGACGCT 58.770 42.857 0.00 0.00 38.05 5.07
20 21 2.704725 TCAAATCTTTGCCTTGACGC 57.295 45.000 0.00 0.00 38.05 5.19
21 22 4.164822 ACATCAAATCTTTGCCTTGACG 57.835 40.909 0.00 0.00 38.05 4.35
22 23 9.294030 CTATTTACATCAAATCTTTGCCTTGAC 57.706 33.333 0.00 0.00 37.93 3.18
23 24 9.241919 TCTATTTACATCAAATCTTTGCCTTGA 57.758 29.630 0.00 0.00 37.93 3.02
24 25 9.859427 TTCTATTTACATCAAATCTTTGCCTTG 57.141 29.630 0.00 0.00 37.93 3.61
26 27 8.193438 GCTTCTATTTACATCAAATCTTTGCCT 58.807 33.333 0.00 0.00 37.93 4.75
27 28 7.166473 CGCTTCTATTTACATCAAATCTTTGCC 59.834 37.037 0.00 0.00 37.93 4.52
28 29 7.166473 CCGCTTCTATTTACATCAAATCTTTGC 59.834 37.037 0.00 0.00 37.93 3.68
29 30 7.166473 GCCGCTTCTATTTACATCAAATCTTTG 59.834 37.037 0.00 0.00 37.93 2.77
30 31 7.148086 TGCCGCTTCTATTTACATCAAATCTTT 60.148 33.333 0.00 0.00 37.93 2.52
31 32 6.318648 TGCCGCTTCTATTTACATCAAATCTT 59.681 34.615 0.00 0.00 37.93 2.40
32 33 5.822519 TGCCGCTTCTATTTACATCAAATCT 59.177 36.000 0.00 0.00 37.93 2.40
254 278 2.348998 GGAGGCAGTGGACAGTGG 59.651 66.667 9.03 0.00 32.50 4.00
255 279 2.047844 CGGAGGCAGTGGACAGTG 60.048 66.667 2.80 2.80 34.93 3.66
256 280 2.203640 TCGGAGGCAGTGGACAGT 60.204 61.111 0.00 0.00 0.00 3.55
257 281 2.575993 CTCGGAGGCAGTGGACAG 59.424 66.667 0.00 0.00 0.00 3.51
258 282 2.997315 CCTCGGAGGCAGTGGACA 60.997 66.667 11.83 0.00 0.00 4.02
550 1155 0.548510 CTTAGGCTTAGGCTTGGGCT 59.451 55.000 14.80 16.66 39.70 5.19
551 1156 1.103987 GCTTAGGCTTAGGCTTGGGC 61.104 60.000 14.80 11.91 39.70 5.36
552 1157 0.466372 GGCTTAGGCTTAGGCTTGGG 60.466 60.000 18.49 5.86 39.70 4.12
553 1158 0.548510 AGGCTTAGGCTTAGGCTTGG 59.451 55.000 22.06 8.35 45.17 3.61
554 1159 3.471680 CTTAGGCTTAGGCTTAGGCTTG 58.528 50.000 30.35 20.44 45.17 4.01
555 1160 2.158740 GCTTAGGCTTAGGCTTAGGCTT 60.159 50.000 30.35 16.67 45.08 4.35
556 1161 1.418264 GCTTAGGCTTAGGCTTAGGCT 59.582 52.381 28.65 28.65 45.08 4.58
557 1162 1.885560 GCTTAGGCTTAGGCTTAGGC 58.114 55.000 20.35 18.16 43.24 3.93
558 1163 1.270358 CGGCTTAGGCTTAGGCTTAGG 60.270 57.143 22.19 10.00 39.70 2.69
559 1164 1.270358 CCGGCTTAGGCTTAGGCTTAG 60.270 57.143 22.19 15.43 39.70 2.18
846 1458 1.293963 TGTGCGAGCTTGCTGTGATC 61.294 55.000 26.07 10.25 35.36 2.92
847 1459 1.301953 TGTGCGAGCTTGCTGTGAT 60.302 52.632 26.07 0.00 35.36 3.06
848 1460 2.108771 TGTGCGAGCTTGCTGTGA 59.891 55.556 26.07 3.35 35.36 3.58
849 1461 2.250485 GTGTGCGAGCTTGCTGTG 59.750 61.111 26.07 0.00 35.36 3.66
868 1498 2.001812 CTAATGGAGGATGGATCGCG 57.998 55.000 0.00 0.00 0.00 5.87
876 1506 2.454381 AGAGGAGGAGCTAATGGAGGAT 59.546 50.000 0.00 0.00 0.00 3.24
900 1533 1.493861 CTGATCTGGAGGAGCAAGGA 58.506 55.000 0.00 0.00 40.01 3.36
951 1584 1.526455 CTAGCTAGGTCTCGCCGGT 60.526 63.158 13.32 0.00 43.70 5.28
952 1585 2.262303 CCTAGCTAGGTCTCGCCGG 61.262 68.421 28.90 0.00 43.70 6.13
953 1586 3.346101 CCTAGCTAGGTCTCGCCG 58.654 66.667 28.90 3.42 43.70 6.46
975 1608 4.095400 TCCCTCCCAGCCTCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
976 1609 4.101077 CTCCCTCCCAGCCTCCCT 62.101 72.222 0.00 0.00 0.00 4.20
979 1612 4.095400 TCCCTCCCTCCCAGCCTC 62.095 72.222 0.00 0.00 0.00 4.70
980 1613 4.101077 CTCCCTCCCTCCCAGCCT 62.101 72.222 0.00 0.00 0.00 4.58
983 1616 3.765257 ATCGCTCCCTCCCTCCCAG 62.765 68.421 0.00 0.00 0.00 4.45
984 1617 3.767268 ATCGCTCCCTCCCTCCCA 61.767 66.667 0.00 0.00 0.00 4.37
1131 1764 2.753029 GGCTCCAGCTTGGTCTGT 59.247 61.111 0.00 0.00 39.03 3.41
1290 1923 1.435515 CTGGTCGTAGCTGGAGAGC 59.564 63.158 0.00 3.24 46.64 4.09
1346 1989 7.809331 CGTAGTAGAGTAGAGACATAGTGGTAG 59.191 44.444 0.00 0.00 0.00 3.18
1347 1990 7.656412 CGTAGTAGAGTAGAGACATAGTGGTA 58.344 42.308 0.00 0.00 0.00 3.25
1348 1991 6.514947 CGTAGTAGAGTAGAGACATAGTGGT 58.485 44.000 0.00 0.00 0.00 4.16
1349 1992 5.406175 GCGTAGTAGAGTAGAGACATAGTGG 59.594 48.000 0.00 0.00 0.00 4.00
1350 1993 5.984323 TGCGTAGTAGAGTAGAGACATAGTG 59.016 44.000 0.00 0.00 0.00 2.74
1351 1994 5.984926 GTGCGTAGTAGAGTAGAGACATAGT 59.015 44.000 0.00 0.00 0.00 2.12
1352 1995 5.406175 GGTGCGTAGTAGAGTAGAGACATAG 59.594 48.000 0.00 0.00 0.00 2.23
1353 1996 5.163374 TGGTGCGTAGTAGAGTAGAGACATA 60.163 44.000 0.00 0.00 0.00 2.29
1354 1997 4.128643 GGTGCGTAGTAGAGTAGAGACAT 58.871 47.826 0.00 0.00 0.00 3.06
1355 1998 3.055602 TGGTGCGTAGTAGAGTAGAGACA 60.056 47.826 0.00 0.00 0.00 3.41
1373 2016 1.136085 CGGCGAAACTAACACATGGTG 60.136 52.381 0.00 0.00 39.75 4.17
1977 2645 2.178521 CGTCGTCTTCTCCACGGG 59.821 66.667 0.00 0.00 37.85 5.28
2022 2694 0.961019 TGACACCGTACCACTACCAC 59.039 55.000 0.00 0.00 0.00 4.16
2023 2695 1.250328 CTGACACCGTACCACTACCA 58.750 55.000 0.00 0.00 0.00 3.25
2024 2696 1.068055 CACTGACACCGTACCACTACC 60.068 57.143 0.00 0.00 0.00 3.18
2025 2697 1.610522 ACACTGACACCGTACCACTAC 59.389 52.381 0.00 0.00 0.00 2.73
2026 2698 1.610038 CACACTGACACCGTACCACTA 59.390 52.381 0.00 0.00 0.00 2.74
2027 2699 0.387929 CACACTGACACCGTACCACT 59.612 55.000 0.00 0.00 0.00 4.00
2081 2758 1.719378 AGAAGGAAGAGACTCCCTGGA 59.281 52.381 0.00 0.00 35.95 3.86
2087 2764 4.081752 TGCTGATTGAGAAGGAAGAGACTC 60.082 45.833 0.00 0.00 0.00 3.36
2094 2776 3.867600 GCTGACTGCTGATTGAGAAGGAA 60.868 47.826 0.00 0.00 38.95 3.36
2174 2860 1.374885 CGGATTACACGGTGTGGCA 60.375 57.895 23.36 7.95 37.94 4.92
2242 2931 1.468914 GTTTGCCTAGCTAGTTGCACC 59.531 52.381 20.26 12.34 45.94 5.01
2337 3047 3.549997 GCAATCACTGTGTTGCGTT 57.450 47.368 22.53 6.06 40.95 4.84
2348 3058 1.263484 CAGCCATGATCTCGCAATCAC 59.737 52.381 0.00 0.00 38.43 3.06
2498 3228 3.763319 GTACCGCAGTGCTGTACG 58.237 61.111 27.06 6.99 38.84 3.67
2630 3360 4.863548 TCGACCTCCCTTTTGATACTCTA 58.136 43.478 0.00 0.00 0.00 2.43
2631 3361 3.709587 TCGACCTCCCTTTTGATACTCT 58.290 45.455 0.00 0.00 0.00 3.24
2632 3362 4.342665 AGATCGACCTCCCTTTTGATACTC 59.657 45.833 0.00 0.00 0.00 2.59
2634 3364 4.141914 ACAGATCGACCTCCCTTTTGATAC 60.142 45.833 0.00 0.00 0.00 2.24
2664 3394 3.359695 TGGGATAAAACCAGGCTACAC 57.640 47.619 0.00 0.00 33.23 2.90
2675 3405 3.459598 AGGCATGACTAGCTGGGATAAAA 59.540 43.478 0.00 0.00 0.00 1.52
2679 3409 1.516110 AAGGCATGACTAGCTGGGAT 58.484 50.000 0.00 0.00 0.00 3.85
2680 3410 1.289160 AAAGGCATGACTAGCTGGGA 58.711 50.000 0.00 0.00 0.00 4.37
2681 3411 2.134789 AAAAGGCATGACTAGCTGGG 57.865 50.000 0.00 0.00 0.00 4.45
2749 3479 7.222611 ACATTATTTGCCATAAAAGATGTTCGC 59.777 33.333 0.00 0.00 31.22 4.70
2755 3485 9.723601 ACAACAACATTATTTGCCATAAAAGAT 57.276 25.926 0.00 0.00 0.00 2.40
2757 3487 8.986847 TCACAACAACATTATTTGCCATAAAAG 58.013 29.630 0.00 0.00 0.00 2.27
2778 3508 7.014134 TGCTAAAGAAATTTGTCATCCTCACAA 59.986 33.333 0.00 0.00 31.76 3.33
2779 3509 6.489700 TGCTAAAGAAATTTGTCATCCTCACA 59.510 34.615 0.00 0.00 0.00 3.58
2837 3570 1.945387 AGCGAGCACATCAATACTGG 58.055 50.000 0.00 0.00 0.00 4.00
2841 3574 4.400529 TCCTTTAGCGAGCACATCAATA 57.599 40.909 0.00 0.00 0.00 1.90
2853 3586 5.258622 CGAGAATGACAAATTCCTTTAGCG 58.741 41.667 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.