Multiple sequence alignment - TraesCS5D01G321300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G321300 chr5D 100.000 5271 0 0 1 5271 413282786 413288056 0.000000e+00 9734.0
1 TraesCS5D01G321300 chr5D 98.450 258 4 0 1 258 538716618 538716875 6.220000e-124 455.0
2 TraesCS5D01G321300 chr5D 79.624 319 47 13 4181 4497 413491144 413491446 4.130000e-51 213.0
3 TraesCS5D01G321300 chr5D 79.624 319 47 13 4181 4497 413593764 413594066 4.130000e-51 213.0
4 TraesCS5D01G321300 chr5D 82.800 250 26 11 2463 2710 413489739 413489973 1.920000e-49 207.0
5 TraesCS5D01G321300 chr5D 95.349 43 1 1 2739 2781 413285564 413285605 3.410000e-07 67.6
6 TraesCS5D01G321300 chr5A 92.527 2275 117 27 922 3174 525599487 525601730 0.000000e+00 3210.0
7 TraesCS5D01G321300 chr5A 95.342 730 32 1 3628 4357 525602036 525602763 0.000000e+00 1158.0
8 TraesCS5D01G321300 chr5A 91.026 624 40 7 307 918 525598672 525599291 0.000000e+00 828.0
9 TraesCS5D01G321300 chr5A 79.349 799 124 20 3700 4495 525919264 525920024 1.680000e-144 523.0
10 TraesCS5D01G321300 chr5A 93.003 343 18 3 3273 3610 525601710 525602051 3.670000e-136 496.0
11 TraesCS5D01G321300 chr5A 78.723 799 128 22 3700 4495 525830643 525831402 3.670000e-136 496.0
12 TraesCS5D01G321300 chr5A 84.861 251 25 12 2463 2710 526264940 526265180 1.900000e-59 241.0
13 TraesCS5D01G321300 chr5A 83.267 251 22 14 2463 2710 525724311 525724544 4.130000e-51 213.0
14 TraesCS5D01G321300 chr5A 83.267 251 23 13 2463 2710 525829744 525829978 4.130000e-51 213.0
15 TraesCS5D01G321300 chr5A 83.200 250 22 14 2463 2710 525918369 525918600 1.490000e-50 211.0
16 TraesCS5D01G321300 chr5A 90.000 70 7 0 2800 2869 325923655 325923586 2.020000e-14 91.6
17 TraesCS5D01G321300 chr5A 91.837 49 3 1 1992 2039 526264635 526264683 3.410000e-07 67.6
18 TraesCS5D01G321300 chr5B 95.329 1670 62 8 314 1970 498079714 498081380 0.000000e+00 2638.0
19 TraesCS5D01G321300 chr5B 92.234 1661 105 11 3628 5271 498083213 498084866 0.000000e+00 2331.0
20 TraesCS5D01G321300 chr5B 85.389 746 58 23 2443 3168 498082188 498082902 0.000000e+00 726.0
21 TraesCS5D01G321300 chr5B 93.586 343 17 4 3272 3610 498082887 498083228 1.690000e-139 507.0
22 TraesCS5D01G321300 chr5B 78.197 477 82 12 4002 4473 498511907 498512366 8.640000e-73 285.0
23 TraesCS5D01G321300 chr5B 84.400 250 28 8 2463 2710 498511424 498511664 8.820000e-58 235.0
24 TraesCS5D01G321300 chr5B 91.667 132 8 2 2463 2594 498722615 498722743 4.190000e-41 180.0
25 TraesCS5D01G321300 chr5B 92.500 120 6 3 1963 2079 498082005 498082124 9.080000e-38 169.0
26 TraesCS5D01G321300 chr4D 90.816 784 64 4 1159 1935 499734622 499733840 0.000000e+00 1042.0
27 TraesCS5D01G321300 chr4D 80.000 365 65 8 4915 5271 12591200 12590836 4.050000e-66 263.0
28 TraesCS5D01G321300 chr4D 76.812 414 84 11 4862 5265 93351608 93351197 6.870000e-54 222.0
29 TraesCS5D01G321300 chr4B 90.294 783 70 1 1159 1935 642925080 642924298 0.000000e+00 1020.0
30 TraesCS5D01G321300 chr4B 82.117 548 97 1 3692 4238 642923558 642923011 7.990000e-128 468.0
31 TraesCS5D01G321300 chr4B 78.261 437 86 9 4839 5267 116956914 116956479 6.730000e-69 272.0
32 TraesCS5D01G321300 chr4B 91.667 96 8 0 2801 2896 544597883 544597788 3.310000e-27 134.0
33 TraesCS5D01G321300 chrUn 89.031 784 83 1 1159 1939 36612500 36613283 0.000000e+00 968.0
34 TraesCS5D01G321300 chrUn 89.031 784 83 1 1159 1939 301214987 301215770 0.000000e+00 968.0
35 TraesCS5D01G321300 chrUn 97.059 102 2 1 3167 3268 176255326 176255226 2.520000e-38 171.0
36 TraesCS5D01G321300 chr3B 86.194 833 107 4 1114 1942 14370481 14369653 0.000000e+00 894.0
37 TraesCS5D01G321300 chr3B 84.845 904 102 21 1047 1939 26769914 26770793 0.000000e+00 878.0
38 TraesCS5D01G321300 chr3B 91.304 92 7 1 2806 2896 556930718 556930627 1.990000e-24 124.0
39 TraesCS5D01G321300 chr3A 87.517 729 86 3 1213 1937 16858971 16859698 0.000000e+00 837.0
40 TraesCS5D01G321300 chr3A 87.243 729 88 3 1213 1937 16810285 16811012 0.000000e+00 826.0
41 TraesCS5D01G321300 chr3A 83.893 298 39 7 4983 5271 528524041 528524338 5.200000e-70 276.0
42 TraesCS5D01G321300 chr3A 78.149 389 76 8 4838 5218 30349812 30349425 6.820000e-59 239.0
43 TraesCS5D01G321300 chr3A 90.816 98 9 0 2799 2896 621323737 621323834 1.190000e-26 132.0
44 TraesCS5D01G321300 chr2D 96.538 260 9 0 1 260 409529476 409529217 1.050000e-116 431.0
45 TraesCS5D01G321300 chr2D 95.769 260 11 0 1 260 172735509 172735250 2.270000e-113 420.0
46 TraesCS5D01G321300 chr2D 95.472 265 9 3 1 263 375370806 375371069 2.270000e-113 420.0
47 TraesCS5D01G321300 chr2D 83.465 127 10 5 2801 2916 391274920 391274794 2.010000e-19 108.0
48 TraesCS5D01G321300 chr7D 96.183 262 9 1 1 262 161284152 161283892 1.360000e-115 427.0
49 TraesCS5D01G321300 chr7D 96.109 257 10 0 4 260 531437544 531437288 2.270000e-113 420.0
50 TraesCS5D01G321300 chr7D 79.511 532 90 14 4602 5126 47642662 47643181 1.400000e-95 361.0
51 TraesCS5D01G321300 chr7D 95.238 105 5 0 2198 2302 571865643 571865539 3.270000e-37 167.0
52 TraesCS5D01G321300 chr7D 85.926 135 19 0 2228 2362 427908247 427908381 1.530000e-30 145.0
53 TraesCS5D01G321300 chr7D 94.505 91 4 1 2179 2268 636709796 636709886 7.120000e-29 139.0
54 TraesCS5D01G321300 chr7D 100.000 30 0 0 2889 2918 569705259 569705288 7.370000e-04 56.5
55 TraesCS5D01G321300 chr3D 95.785 261 11 0 1 261 1294799 1294539 6.310000e-114 422.0
56 TraesCS5D01G321300 chr3D 78.986 414 75 10 4843 5245 10387543 10387955 6.730000e-69 272.0
57 TraesCS5D01G321300 chr2A 96.124 258 10 0 1 258 759891897 759891640 6.310000e-114 422.0
58 TraesCS5D01G321300 chr2A 77.835 388 79 7 4838 5218 10539859 10539472 3.170000e-57 233.0
59 TraesCS5D01G321300 chr2A 97.059 102 2 1 3167 3268 4510580 4510680 2.520000e-38 171.0
60 TraesCS5D01G321300 chr2A 97.059 102 2 1 3167 3268 4570050 4570150 2.520000e-38 171.0
61 TraesCS5D01G321300 chr2A 95.745 94 4 0 3175 3268 385917751 385917844 9.140000e-33 152.0
62 TraesCS5D01G321300 chr2A 84.252 127 9 5 2801 2916 527913920 527913794 4.310000e-21 113.0
63 TraesCS5D01G321300 chr4A 95.769 260 11 0 1 260 385696036 385696295 2.270000e-113 420.0
64 TraesCS5D01G321300 chr4A 85.088 228 26 2 4601 4826 662542798 662543019 5.310000e-55 226.0
65 TraesCS5D01G321300 chr4A 82.743 226 35 3 4601 4826 662637657 662637436 1.160000e-46 198.0
66 TraesCS5D01G321300 chr4A 92.632 95 6 1 2802 2896 477033207 477033300 9.210000e-28 135.0
67 TraesCS5D01G321300 chr4A 89.796 98 8 1 2801 2896 29077530 29077433 1.990000e-24 124.0
68 TraesCS5D01G321300 chr6D 93.989 183 10 1 2179 2360 372814073 372813891 5.200000e-70 276.0
69 TraesCS5D01G321300 chr2B 93.011 186 12 1 2178 2362 60121710 60121525 2.420000e-68 270.0
70 TraesCS5D01G321300 chr2B 95.098 102 5 0 3167 3268 395708468 395708367 1.520000e-35 161.0
71 TraesCS5D01G321300 chr2B 94.118 102 5 1 3167 3268 395732290 395732190 2.540000e-33 154.0
72 TraesCS5D01G321300 chr2B 92.593 108 7 1 3162 3268 627068269 627068376 2.540000e-33 154.0
73 TraesCS5D01G321300 chr2B 94.898 98 4 1 3167 3264 397162886 397162790 9.140000e-33 152.0
74 TraesCS5D01G321300 chr2B 83.465 127 9 6 2801 2916 462889394 462889269 2.010000e-19 108.0
75 TraesCS5D01G321300 chr7B 93.396 106 6 1 3163 3268 298871401 298871505 7.070000e-34 156.0
76 TraesCS5D01G321300 chr7B 90.722 97 9 0 2800 2896 123782865 123782961 4.280000e-26 130.0
77 TraesCS5D01G321300 chr1B 82.105 190 22 11 2179 2360 642492554 642492369 9.140000e-33 152.0
78 TraesCS5D01G321300 chr7A 91.667 96 8 0 2801 2896 498590385 498590290 3.310000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G321300 chr5D 413282786 413288056 5270 False 4900.8 9734 97.6745 1 5271 2 chr5D.!!$F3 5270
1 TraesCS5D01G321300 chr5D 413489739 413491446 1707 False 210.0 213 81.2120 2463 4497 2 chr5D.!!$F4 2034
2 TraesCS5D01G321300 chr5A 525598672 525602763 4091 False 1423.0 3210 92.9745 307 4357 4 chr5A.!!$F2 4050
3 TraesCS5D01G321300 chr5A 525918369 525920024 1655 False 367.0 523 81.2745 2463 4495 2 chr5A.!!$F4 2032
4 TraesCS5D01G321300 chr5A 525829744 525831402 1658 False 354.5 496 80.9950 2463 4495 2 chr5A.!!$F3 2032
5 TraesCS5D01G321300 chr5B 498079714 498084866 5152 False 1274.2 2638 91.8076 314 5271 5 chr5B.!!$F2 4957
6 TraesCS5D01G321300 chr5B 498511424 498512366 942 False 260.0 285 81.2985 2463 4473 2 chr5B.!!$F3 2010
7 TraesCS5D01G321300 chr4D 499733840 499734622 782 True 1042.0 1042 90.8160 1159 1935 1 chr4D.!!$R3 776
8 TraesCS5D01G321300 chr4B 642923011 642925080 2069 True 744.0 1020 86.2055 1159 4238 2 chr4B.!!$R3 3079
9 TraesCS5D01G321300 chrUn 36612500 36613283 783 False 968.0 968 89.0310 1159 1939 1 chrUn.!!$F1 780
10 TraesCS5D01G321300 chrUn 301214987 301215770 783 False 968.0 968 89.0310 1159 1939 1 chrUn.!!$F2 780
11 TraesCS5D01G321300 chr3B 14369653 14370481 828 True 894.0 894 86.1940 1114 1942 1 chr3B.!!$R1 828
12 TraesCS5D01G321300 chr3B 26769914 26770793 879 False 878.0 878 84.8450 1047 1939 1 chr3B.!!$F1 892
13 TraesCS5D01G321300 chr3A 16858971 16859698 727 False 837.0 837 87.5170 1213 1937 1 chr3A.!!$F2 724
14 TraesCS5D01G321300 chr3A 16810285 16811012 727 False 826.0 826 87.2430 1213 1937 1 chr3A.!!$F1 724
15 TraesCS5D01G321300 chr7D 47642662 47643181 519 False 361.0 361 79.5110 4602 5126 1 chr7D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 302 0.395724 TAGATGGAGGCTGCAGTCGA 60.396 55.0 15.56 3.36 0.00 4.20 F
834 850 0.753262 ATCTATTCGGGCGTCAGCTT 59.247 50.0 0.00 0.00 44.37 3.74 F
2325 3203 0.036388 TGTGCCTCCTGGTTCGAATC 60.036 55.0 0.00 0.00 35.27 2.52 F
2785 3888 0.457035 CCTCCATCCCAAATTGTGCG 59.543 55.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1629 1.913778 TGCTGAGGTACTTCCACGTA 58.086 50.000 2.10 0.0 41.55 3.57 R
2769 3872 1.202132 CGTACGCACAATTTGGGATGG 60.202 52.381 0.52 0.0 40.70 3.51 R
3262 4394 0.392461 GCACCTTTCATGGCGGAGTA 60.392 55.000 0.00 0.0 0.00 2.59 R
4343 5777 0.036164 TCCAAATCCACGTCACCCAG 59.964 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.858381 CATGGGCATGTTACTAGTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
33 34 5.950544 TGGGCATGTTACTAGTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
34 35 7.441836 CATGGGCATGTTACTAGTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
35 36 6.812998 TGGGCATGTTACTAGTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
36 37 6.610020 TGGGCATGTTACTAGTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
37 38 7.781219 TGGGCATGTTACTAGTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
38 39 8.081025 GGGCATGTTACTAGTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
39 40 8.081025 GGCATGTTACTAGTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
40 41 8.848182 GCATGTTACTAGTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
50 51 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
51 52 7.611079 GTCTATGTTACTACCTCTATAGTGGGG 59.389 44.444 21.82 16.35 36.09 4.96
52 53 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
53 54 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
54 55 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
55 56 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
56 57 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
57 58 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
58 59 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
59 60 4.544683 ACCTCTATAGTGGGGAGTAACAC 58.455 47.826 21.82 0.00 37.86 3.32
60 61 4.016851 ACCTCTATAGTGGGGAGTAACACA 60.017 45.833 21.82 0.00 39.99 3.72
61 62 5.148502 CCTCTATAGTGGGGAGTAACACAT 58.851 45.833 12.29 0.00 39.99 3.21
62 63 5.011125 CCTCTATAGTGGGGAGTAACACATG 59.989 48.000 12.29 0.00 39.99 3.21
63 64 5.525484 TCTATAGTGGGGAGTAACACATGT 58.475 41.667 0.00 0.00 39.99 3.21
64 65 2.859165 AGTGGGGAGTAACACATGTG 57.141 50.000 24.25 24.25 39.99 3.21
69 70 2.303600 GGGGAGTAACACATGTGTGGTA 59.696 50.000 31.17 18.16 45.48 3.25
85 86 3.719268 TGGTAACATGGAGCACTTCAT 57.281 42.857 0.00 0.00 46.17 2.57
86 87 4.032960 TGGTAACATGGAGCACTTCATT 57.967 40.909 0.00 0.00 46.17 2.57
87 88 4.406456 TGGTAACATGGAGCACTTCATTT 58.594 39.130 0.00 0.00 46.17 2.32
88 89 5.565509 TGGTAACATGGAGCACTTCATTTA 58.434 37.500 0.00 0.00 46.17 1.40
89 90 6.186957 TGGTAACATGGAGCACTTCATTTAT 58.813 36.000 0.00 0.00 46.17 1.40
90 91 6.663093 TGGTAACATGGAGCACTTCATTTATT 59.337 34.615 0.00 0.00 46.17 1.40
91 92 7.831690 TGGTAACATGGAGCACTTCATTTATTA 59.168 33.333 0.00 0.00 46.17 0.98
92 93 8.345565 GGTAACATGGAGCACTTCATTTATTAG 58.654 37.037 0.00 0.00 0.00 1.73
93 94 6.949352 ACATGGAGCACTTCATTTATTAGG 57.051 37.500 0.00 0.00 0.00 2.69
94 95 5.300286 ACATGGAGCACTTCATTTATTAGGC 59.700 40.000 0.00 0.00 0.00 3.93
95 96 5.116084 TGGAGCACTTCATTTATTAGGCT 57.884 39.130 0.00 0.00 0.00 4.58
96 97 6.247229 TGGAGCACTTCATTTATTAGGCTA 57.753 37.500 0.00 0.00 0.00 3.93
97 98 6.841601 TGGAGCACTTCATTTATTAGGCTAT 58.158 36.000 0.00 0.00 0.00 2.97
98 99 7.973402 TGGAGCACTTCATTTATTAGGCTATA 58.027 34.615 0.00 0.00 0.00 1.31
99 100 8.097038 TGGAGCACTTCATTTATTAGGCTATAG 58.903 37.037 0.00 0.00 0.00 1.31
100 101 8.314751 GGAGCACTTCATTTATTAGGCTATAGA 58.685 37.037 3.21 0.00 0.00 1.98
101 102 9.145865 GAGCACTTCATTTATTAGGCTATAGAC 57.854 37.037 3.21 0.00 0.00 2.59
102 103 8.651389 AGCACTTCATTTATTAGGCTATAGACA 58.349 33.333 8.68 0.00 0.00 3.41
103 104 8.713271 GCACTTCATTTATTAGGCTATAGACAC 58.287 37.037 8.68 0.00 0.00 3.67
104 105 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
124 125 6.973229 CACATCTTGTCTTGATATGTGTGA 57.027 37.500 0.00 0.00 41.46 3.58
125 126 7.549615 CACATCTTGTCTTGATATGTGTGAT 57.450 36.000 0.00 0.00 41.46 3.06
126 127 7.407337 CACATCTTGTCTTGATATGTGTGATG 58.593 38.462 0.00 0.00 41.46 3.07
127 128 7.065443 CACATCTTGTCTTGATATGTGTGATGT 59.935 37.037 0.00 0.00 41.46 3.06
128 129 7.609146 ACATCTTGTCTTGATATGTGTGATGTT 59.391 33.333 0.00 0.00 37.94 2.71
129 130 9.101655 CATCTTGTCTTGATATGTGTGATGTTA 57.898 33.333 0.00 0.00 0.00 2.41
130 131 8.479313 TCTTGTCTTGATATGTGTGATGTTAC 57.521 34.615 0.00 0.00 0.00 2.50
131 132 8.314021 TCTTGTCTTGATATGTGTGATGTTACT 58.686 33.333 0.00 0.00 0.00 2.24
132 133 8.479313 TTGTCTTGATATGTGTGATGTTACTC 57.521 34.615 0.00 0.00 0.00 2.59
133 134 7.610865 TGTCTTGATATGTGTGATGTTACTCA 58.389 34.615 0.00 0.00 0.00 3.41
134 135 8.260114 TGTCTTGATATGTGTGATGTTACTCAT 58.740 33.333 0.00 0.00 38.11 2.90
135 136 9.750125 GTCTTGATATGTGTGATGTTACTCATA 57.250 33.333 0.00 0.00 39.73 2.15
136 137 9.750125 TCTTGATATGTGTGATGTTACTCATAC 57.250 33.333 0.00 5.35 38.84 2.39
137 138 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
143 144 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
144 145 9.895138 TGTGTGATGTTACTCATACTAGTAGTA 57.105 33.333 12.38 12.38 37.92 1.82
162 163 9.558396 CTAGTAGTAACTAGCTATGTTACCACT 57.442 37.037 27.98 27.98 46.53 4.00
166 167 8.991783 AGTAACTAGCTATGTTACCACTATCA 57.008 34.615 25.92 4.92 46.31 2.15
167 168 9.589461 AGTAACTAGCTATGTTACCACTATCAT 57.411 33.333 25.92 13.30 46.31 2.45
168 169 9.843334 GTAACTAGCTATGTTACCACTATCATC 57.157 37.037 22.55 6.32 42.06 2.92
169 170 8.713708 AACTAGCTATGTTACCACTATCATCT 57.286 34.615 0.00 0.00 0.00 2.90
170 171 8.343168 ACTAGCTATGTTACCACTATCATCTC 57.657 38.462 0.00 0.00 0.00 2.75
171 172 8.167392 ACTAGCTATGTTACCACTATCATCTCT 58.833 37.037 0.00 0.00 0.00 3.10
172 173 7.847711 AGCTATGTTACCACTATCATCTCTT 57.152 36.000 0.00 0.00 0.00 2.85
173 174 8.256356 AGCTATGTTACCACTATCATCTCTTT 57.744 34.615 0.00 0.00 0.00 2.52
174 175 8.364142 AGCTATGTTACCACTATCATCTCTTTC 58.636 37.037 0.00 0.00 0.00 2.62
175 176 8.364142 GCTATGTTACCACTATCATCTCTTTCT 58.636 37.037 0.00 0.00 0.00 2.52
178 179 8.134202 TGTTACCACTATCATCTCTTTCTTCA 57.866 34.615 0.00 0.00 0.00 3.02
179 180 8.762645 TGTTACCACTATCATCTCTTTCTTCAT 58.237 33.333 0.00 0.00 0.00 2.57
180 181 9.606631 GTTACCACTATCATCTCTTTCTTCATT 57.393 33.333 0.00 0.00 0.00 2.57
191 192 9.674824 CATCTCTTTCTTCATTTATTACATGCC 57.325 33.333 0.00 0.00 0.00 4.40
192 193 8.806429 TCTCTTTCTTCATTTATTACATGCCA 57.194 30.769 0.00 0.00 0.00 4.92
193 194 8.677300 TCTCTTTCTTCATTTATTACATGCCAC 58.323 33.333 0.00 0.00 0.00 5.01
194 195 8.347004 TCTTTCTTCATTTATTACATGCCACA 57.653 30.769 0.00 0.00 0.00 4.17
195 196 8.970020 TCTTTCTTCATTTATTACATGCCACAT 58.030 29.630 0.00 0.00 0.00 3.21
196 197 9.241317 CTTTCTTCATTTATTACATGCCACATC 57.759 33.333 0.00 0.00 0.00 3.06
197 198 7.878547 TCTTCATTTATTACATGCCACATCA 57.121 32.000 0.00 0.00 0.00 3.07
198 199 8.467963 TCTTCATTTATTACATGCCACATCAT 57.532 30.769 0.00 0.00 0.00 2.45
199 200 8.570488 TCTTCATTTATTACATGCCACATCATC 58.430 33.333 0.00 0.00 0.00 2.92
200 201 8.467963 TTCATTTATTACATGCCACATCATCT 57.532 30.769 0.00 0.00 0.00 2.90
201 202 9.571816 TTCATTTATTACATGCCACATCATCTA 57.428 29.630 0.00 0.00 0.00 1.98
202 203 9.743581 TCATTTATTACATGCCACATCATCTAT 57.256 29.630 0.00 0.00 0.00 1.98
208 209 6.639632 ACATGCCACATCATCTATTTAACC 57.360 37.500 0.00 0.00 0.00 2.85
209 210 6.367983 ACATGCCACATCATCTATTTAACCT 58.632 36.000 0.00 0.00 0.00 3.50
210 211 7.517320 ACATGCCACATCATCTATTTAACCTA 58.483 34.615 0.00 0.00 0.00 3.08
211 212 7.663081 ACATGCCACATCATCTATTTAACCTAG 59.337 37.037 0.00 0.00 0.00 3.02
212 213 7.373617 TGCCACATCATCTATTTAACCTAGA 57.626 36.000 0.00 0.00 0.00 2.43
213 214 7.977818 TGCCACATCATCTATTTAACCTAGAT 58.022 34.615 0.00 2.29 36.58 1.98
214 215 9.100197 TGCCACATCATCTATTTAACCTAGATA 57.900 33.333 6.48 0.00 34.84 1.98
231 232 8.179509 ACCTAGATATGTGTGATGTTACTACC 57.820 38.462 0.00 0.00 0.00 3.18
232 233 8.005388 ACCTAGATATGTGTGATGTTACTACCT 58.995 37.037 0.00 0.00 0.00 3.08
233 234 9.516546 CCTAGATATGTGTGATGTTACTACCTA 57.483 37.037 0.00 0.00 0.00 3.08
236 237 9.368416 AGATATGTGTGATGTTACTACCTATGT 57.632 33.333 0.00 0.00 0.00 2.29
237 238 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
240 241 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
241 242 8.464404 TGTGTGATGTTACTACCTATGTTACTC 58.536 37.037 0.00 0.00 0.00 2.59
242 243 7.919621 GTGTGATGTTACTACCTATGTTACTCC 59.080 40.741 0.00 0.00 0.00 3.85
243 244 7.837689 TGTGATGTTACTACCTATGTTACTCCT 59.162 37.037 0.00 0.00 0.00 3.69
244 245 9.347240 GTGATGTTACTACCTATGTTACTCCTA 57.653 37.037 0.00 0.00 0.00 2.94
245 246 9.347240 TGATGTTACTACCTATGTTACTCCTAC 57.653 37.037 0.00 0.00 0.00 3.18
246 247 9.571816 GATGTTACTACCTATGTTACTCCTACT 57.428 37.037 0.00 0.00 0.00 2.57
247 248 8.743085 TGTTACTACCTATGTTACTCCTACTG 57.257 38.462 0.00 0.00 0.00 2.74
248 249 8.331740 TGTTACTACCTATGTTACTCCTACTGT 58.668 37.037 0.00 0.00 0.00 3.55
249 250 8.619546 GTTACTACCTATGTTACTCCTACTGTG 58.380 40.741 0.00 0.00 0.00 3.66
250 251 6.127793 ACTACCTATGTTACTCCTACTGTGG 58.872 44.000 0.00 0.00 0.00 4.17
251 252 4.287552 ACCTATGTTACTCCTACTGTGGG 58.712 47.826 3.43 3.43 0.00 4.61
252 253 4.264713 ACCTATGTTACTCCTACTGTGGGT 60.265 45.833 10.18 0.00 0.00 4.51
253 254 5.043881 ACCTATGTTACTCCTACTGTGGGTA 60.044 44.000 10.18 0.00 0.00 3.69
254 255 5.535406 CCTATGTTACTCCTACTGTGGGTAG 59.465 48.000 10.18 8.70 45.45 3.18
255 256 4.393239 TGTTACTCCTACTGTGGGTAGT 57.607 45.455 10.18 13.46 44.66 2.73
256 257 4.338879 TGTTACTCCTACTGTGGGTAGTC 58.661 47.826 10.18 3.27 44.66 2.59
257 258 4.043812 TGTTACTCCTACTGTGGGTAGTCT 59.956 45.833 10.18 0.00 44.66 3.24
258 259 5.251468 TGTTACTCCTACTGTGGGTAGTCTA 59.749 44.000 10.18 2.88 44.66 2.59
259 260 4.942363 ACTCCTACTGTGGGTAGTCTAA 57.058 45.455 10.18 0.00 44.66 2.10
260 261 5.266709 ACTCCTACTGTGGGTAGTCTAAA 57.733 43.478 10.18 0.00 44.66 1.85
261 262 5.840081 ACTCCTACTGTGGGTAGTCTAAAT 58.160 41.667 10.18 0.00 44.66 1.40
262 263 6.262207 ACTCCTACTGTGGGTAGTCTAAATT 58.738 40.000 10.18 0.00 44.66 1.82
263 264 7.416731 ACTCCTACTGTGGGTAGTCTAAATTA 58.583 38.462 10.18 0.00 44.66 1.40
264 265 8.066247 ACTCCTACTGTGGGTAGTCTAAATTAT 58.934 37.037 10.18 0.00 44.66 1.28
265 266 8.246430 TCCTACTGTGGGTAGTCTAAATTATG 57.754 38.462 10.18 0.00 44.66 1.90
266 267 7.842743 TCCTACTGTGGGTAGTCTAAATTATGT 59.157 37.037 10.18 0.00 44.66 2.29
267 268 8.142551 CCTACTGTGGGTAGTCTAAATTATGTC 58.857 40.741 1.43 0.00 44.66 3.06
268 269 6.570692 ACTGTGGGTAGTCTAAATTATGTCG 58.429 40.000 0.00 0.00 0.00 4.35
269 270 5.353938 TGTGGGTAGTCTAAATTATGTCGC 58.646 41.667 0.00 0.00 0.00 5.19
270 271 5.128171 TGTGGGTAGTCTAAATTATGTCGCT 59.872 40.000 0.00 0.00 0.00 4.93
271 272 6.047231 GTGGGTAGTCTAAATTATGTCGCTT 58.953 40.000 0.00 0.00 0.00 4.68
272 273 7.147863 TGTGGGTAGTCTAAATTATGTCGCTTA 60.148 37.037 0.00 0.00 0.00 3.09
273 274 7.871463 GTGGGTAGTCTAAATTATGTCGCTTAT 59.129 37.037 0.00 0.00 0.00 1.73
274 275 8.426489 TGGGTAGTCTAAATTATGTCGCTTATT 58.574 33.333 0.00 0.00 0.00 1.40
275 276 9.918630 GGGTAGTCTAAATTATGTCGCTTATTA 57.081 33.333 0.00 0.00 0.00 0.98
289 290 9.682465 ATGTCGCTTATTACTAGTATAGATGGA 57.318 33.333 2.79 0.00 42.77 3.41
290 291 9.163899 TGTCGCTTATTACTAGTATAGATGGAG 57.836 37.037 2.79 0.00 42.77 3.86
291 292 8.614346 GTCGCTTATTACTAGTATAGATGGAGG 58.386 40.741 2.79 0.00 42.77 4.30
292 293 7.282675 TCGCTTATTACTAGTATAGATGGAGGC 59.717 40.741 2.79 0.00 42.77 4.70
293 294 7.283580 CGCTTATTACTAGTATAGATGGAGGCT 59.716 40.741 2.79 0.00 42.77 4.58
294 295 8.410141 GCTTATTACTAGTATAGATGGAGGCTG 58.590 40.741 2.79 0.00 42.77 4.85
295 296 6.783708 ATTACTAGTATAGATGGAGGCTGC 57.216 41.667 2.79 0.00 42.77 5.25
296 297 4.119556 ACTAGTATAGATGGAGGCTGCA 57.880 45.455 12.23 12.23 42.77 4.41
297 298 4.085733 ACTAGTATAGATGGAGGCTGCAG 58.914 47.826 15.56 10.11 42.77 4.41
298 299 2.969628 AGTATAGATGGAGGCTGCAGT 58.030 47.619 15.56 6.87 0.00 4.40
299 300 2.896685 AGTATAGATGGAGGCTGCAGTC 59.103 50.000 15.56 11.28 0.00 3.51
300 301 0.678395 ATAGATGGAGGCTGCAGTCG 59.322 55.000 15.56 0.00 0.00 4.18
301 302 0.395724 TAGATGGAGGCTGCAGTCGA 60.396 55.000 15.56 3.36 0.00 4.20
302 303 1.219124 GATGGAGGCTGCAGTCGAA 59.781 57.895 15.56 4.21 0.00 3.71
303 304 0.809241 GATGGAGGCTGCAGTCGAAG 60.809 60.000 15.56 0.00 0.00 3.79
304 305 2.125350 GGAGGCTGCAGTCGAAGG 60.125 66.667 16.64 0.00 0.00 3.46
305 306 2.125350 GAGGCTGCAGTCGAAGGG 60.125 66.667 16.64 0.00 0.00 3.95
306 307 4.400961 AGGCTGCAGTCGAAGGGC 62.401 66.667 16.64 0.00 0.00 5.19
309 310 2.811317 CTGCAGTCGAAGGGCGTC 60.811 66.667 5.25 0.00 41.80 5.19
310 311 4.373116 TGCAGTCGAAGGGCGTCC 62.373 66.667 0.00 0.00 41.80 4.79
311 312 4.373116 GCAGTCGAAGGGCGTCCA 62.373 66.667 9.71 0.00 41.80 4.02
397 398 5.743872 TCATTGACGATCTTGACGAATACAG 59.256 40.000 0.00 0.00 34.70 2.74
500 504 6.186420 TGGAATAGCATGATTAGTTGGCTA 57.814 37.500 0.00 0.00 40.88 3.93
623 633 5.168647 ACGAATGGATTTAACTACCACCA 57.831 39.130 0.00 0.00 36.49 4.17
630 640 3.947612 TTTAACTACCACCACCCACAA 57.052 42.857 0.00 0.00 0.00 3.33
638 648 1.478471 CCACCACCCACAAGTTCATCA 60.478 52.381 0.00 0.00 0.00 3.07
692 707 4.081406 AGCAAGCACATAATGTCCTTCAA 58.919 39.130 0.00 0.00 0.00 2.69
699 714 5.356751 GCACATAATGTCCTTCAATACACCA 59.643 40.000 0.00 0.00 0.00 4.17
700 715 6.127758 GCACATAATGTCCTTCAATACACCAA 60.128 38.462 0.00 0.00 0.00 3.67
714 729 3.866883 ACACCAAAAACAAGTGGAGTG 57.133 42.857 0.00 0.00 37.34 3.51
814 830 2.931512 GCCCGCAGCAAATTAAGTAA 57.068 45.000 0.00 0.00 42.97 2.24
834 850 0.753262 ATCTATTCGGGCGTCAGCTT 59.247 50.000 0.00 0.00 44.37 3.74
851 867 1.522668 CTTGTGATGCTCGTTGGGAA 58.477 50.000 0.00 0.00 0.00 3.97
883 907 2.420722 TGGACAAGTTGACCAAAACGAC 59.579 45.455 22.29 0.00 39.12 4.34
901 925 2.180204 CCGCATACCCTTTCTGGCG 61.180 63.158 0.00 0.00 43.68 5.69
903 927 2.823829 GCATACCCTTTCTGGCGCG 61.824 63.158 0.00 0.00 0.00 6.86
907 931 3.788766 CCCTTTCTGGCGCGTTCG 61.789 66.667 8.43 0.00 39.07 3.95
920 944 3.274196 CGTTCGTTCGCCTCAATTG 57.726 52.632 0.00 0.00 0.00 2.32
1869 2097 4.856801 CCGCTTATGGCCGCCACT 62.857 66.667 16.16 6.91 35.80 4.00
1952 2180 1.922545 GTACAAACGCCGCTTAGTAGG 59.077 52.381 0.00 0.00 0.00 3.18
1989 2858 1.333619 TGCTGCGAGACAAAAGGTTTC 59.666 47.619 0.00 0.00 0.00 2.78
2176 3054 4.065088 TGAGTGTGCCTTTGAATCTGTAC 58.935 43.478 0.00 0.00 0.00 2.90
2213 3091 8.536175 GGGATCCCAAACTTTATTAATGTGAAA 58.464 33.333 26.95 0.00 35.81 2.69
2238 3116 8.472007 ACAACATTTAAAGGGATACAAAGACA 57.528 30.769 4.70 0.00 39.74 3.41
2239 3117 8.576442 ACAACATTTAAAGGGATACAAAGACAG 58.424 33.333 4.70 0.00 39.74 3.51
2317 3195 1.171308 CAAGATTGTGTGCCTCCTGG 58.829 55.000 0.00 0.00 0.00 4.45
2319 3197 0.773644 AGATTGTGTGCCTCCTGGTT 59.226 50.000 0.00 0.00 35.27 3.67
2320 3198 1.168714 GATTGTGTGCCTCCTGGTTC 58.831 55.000 0.00 0.00 35.27 3.62
2321 3199 0.606401 ATTGTGTGCCTCCTGGTTCG 60.606 55.000 0.00 0.00 35.27 3.95
2322 3200 1.691195 TTGTGTGCCTCCTGGTTCGA 61.691 55.000 0.00 0.00 35.27 3.71
2324 3202 0.321653 GTGTGCCTCCTGGTTCGAAT 60.322 55.000 0.00 0.00 35.27 3.34
2325 3203 0.036388 TGTGCCTCCTGGTTCGAATC 60.036 55.000 0.00 0.00 35.27 2.52
2327 3205 0.036388 TGCCTCCTGGTTCGAATCAC 60.036 55.000 7.11 0.00 35.27 3.06
2328 3206 1.084370 GCCTCCTGGTTCGAATCACG 61.084 60.000 7.11 3.87 38.36 4.35
2387 3265 4.866508 TCACGACCTTTGAATCTGTAGT 57.133 40.909 0.00 0.00 0.00 2.73
2438 3317 3.449018 TGTTGGGCTTAGTTGCTGAAAAA 59.551 39.130 0.00 0.00 0.00 1.94
2752 3855 4.689071 TCACTTATATTGTGCGTACCTGG 58.311 43.478 0.00 0.00 35.58 4.45
2769 3872 7.972832 GCGTACCTGGATAACTTATATTACCTC 59.027 40.741 0.00 0.00 0.00 3.85
2774 3877 8.487028 CCTGGATAACTTATATTACCTCCATCC 58.513 40.741 0.00 0.00 31.56 3.51
2775 3878 8.388656 TGGATAACTTATATTACCTCCATCCC 57.611 38.462 0.00 0.00 0.00 3.85
2776 3879 7.964867 TGGATAACTTATATTACCTCCATCCCA 59.035 37.037 0.00 0.00 0.00 4.37
2777 3880 8.832735 GGATAACTTATATTACCTCCATCCCAA 58.167 37.037 0.00 0.00 0.00 4.12
2781 3884 8.940397 ACTTATATTACCTCCATCCCAAATTG 57.060 34.615 0.00 0.00 0.00 2.32
2782 3885 8.511126 ACTTATATTACCTCCATCCCAAATTGT 58.489 33.333 0.00 0.00 0.00 2.71
2783 3886 8.704849 TTATATTACCTCCATCCCAAATTGTG 57.295 34.615 0.00 0.00 0.00 3.33
2784 3887 1.560505 ACCTCCATCCCAAATTGTGC 58.439 50.000 0.00 0.00 0.00 4.57
2785 3888 0.457035 CCTCCATCCCAAATTGTGCG 59.543 55.000 0.00 0.00 0.00 5.34
2786 3889 1.176527 CTCCATCCCAAATTGTGCGT 58.823 50.000 0.00 0.00 0.00 5.24
2787 3890 2.364632 CTCCATCCCAAATTGTGCGTA 58.635 47.619 0.00 0.00 0.00 4.42
2788 3891 2.088423 TCCATCCCAAATTGTGCGTAC 58.912 47.619 0.00 0.00 0.00 3.67
2789 3892 1.202132 CCATCCCAAATTGTGCGTACG 60.202 52.381 11.84 11.84 0.00 3.67
2790 3893 1.466950 CATCCCAAATTGTGCGTACGT 59.533 47.619 17.90 0.00 0.00 3.57
2791 3894 0.869068 TCCCAAATTGTGCGTACGTG 59.131 50.000 17.90 4.96 0.00 4.49
2792 3895 0.869068 CCCAAATTGTGCGTACGTGA 59.131 50.000 17.90 0.58 0.00 4.35
2793 3896 1.466950 CCCAAATTGTGCGTACGTGAT 59.533 47.619 17.90 3.25 0.00 3.06
2794 3897 2.673862 CCCAAATTGTGCGTACGTGATA 59.326 45.455 17.90 0.00 0.00 2.15
2795 3898 3.125487 CCCAAATTGTGCGTACGTGATAA 59.875 43.478 17.90 8.89 0.00 1.75
2796 3899 4.085884 CCAAATTGTGCGTACGTGATAAC 58.914 43.478 17.90 8.42 0.00 1.89
2797 3900 4.142988 CCAAATTGTGCGTACGTGATAACT 60.143 41.667 17.90 0.00 0.00 2.24
2798 3901 5.379003 CAAATTGTGCGTACGTGATAACTT 58.621 37.500 17.90 2.30 0.00 2.66
2799 3902 6.401260 CCAAATTGTGCGTACGTGATAACTTA 60.401 38.462 17.90 2.18 0.00 2.24
2800 3903 6.897259 AATTGTGCGTACGTGATAACTTAT 57.103 33.333 17.90 4.11 0.00 1.73
2801 3904 7.990541 AATTGTGCGTACGTGATAACTTATA 57.009 32.000 17.90 0.00 0.00 0.98
2802 3905 8.583810 AATTGTGCGTACGTGATAACTTATAT 57.416 30.769 17.90 0.00 0.00 0.86
2803 3906 7.990541 TTGTGCGTACGTGATAACTTATATT 57.009 32.000 17.90 0.00 0.00 1.28
2804 3907 9.681692 ATTGTGCGTACGTGATAACTTATATTA 57.318 29.630 17.90 0.00 0.00 0.98
2805 3908 8.492920 TGTGCGTACGTGATAACTTATATTAC 57.507 34.615 17.90 0.00 0.00 1.89
2806 3909 7.591057 TGTGCGTACGTGATAACTTATATTACC 59.409 37.037 17.90 0.00 0.00 2.85
2807 3910 7.805071 GTGCGTACGTGATAACTTATATTACCT 59.195 37.037 17.90 0.00 0.00 3.08
2808 3911 8.017373 TGCGTACGTGATAACTTATATTACCTC 58.983 37.037 17.90 0.00 0.00 3.85
2809 3912 7.483059 GCGTACGTGATAACTTATATTACCTCC 59.517 40.741 17.90 0.00 0.00 4.30
2810 3913 8.506437 CGTACGTGATAACTTATATTACCTCCA 58.494 37.037 7.22 0.00 0.00 3.86
2881 3988 6.072064 ACACTAATACGTGCCTAGATACATCC 60.072 42.308 0.00 0.00 38.45 3.51
2882 3989 6.008331 ACTAATACGTGCCTAGATACATCCA 58.992 40.000 0.00 0.00 0.00 3.41
2886 3993 7.661536 ATACGTGCCTAGATACATCCATATT 57.338 36.000 0.00 0.00 0.00 1.28
2920 4027 1.492764 GGGACGGAGGGAGTATTCAA 58.507 55.000 0.00 0.00 0.00 2.69
2987 4104 7.775053 AGTATATTGTTCCACCAAATGTTGT 57.225 32.000 0.00 0.00 0.00 3.32
2995 4112 6.038825 TGTTCCACCAAATGTTGTAAGTGTAG 59.961 38.462 0.00 0.00 0.00 2.74
3087 4214 9.914131 AAAGAAGGCAAAGAGTGAATTTTATAC 57.086 29.630 0.00 0.00 0.00 1.47
3089 4216 5.880341 AGGCAAAGAGTGAATTTTATACGC 58.120 37.500 0.00 0.00 0.00 4.42
3163 4295 2.839486 AGTCGATTCTGAAAGGTGCA 57.161 45.000 0.00 0.00 0.00 4.57
3167 4299 3.251004 GTCGATTCTGAAAGGTGCAACTT 59.749 43.478 12.33 12.33 36.74 2.66
3168 4300 3.882888 TCGATTCTGAAAGGTGCAACTTT 59.117 39.130 29.31 29.31 42.99 2.66
3169 4301 5.049680 GTCGATTCTGAAAGGTGCAACTTTA 60.050 40.000 29.00 14.55 40.55 1.85
3172 4304 6.863126 CGATTCTGAAAGGTGCAACTTTATTT 59.137 34.615 29.00 8.05 40.55 1.40
3173 4305 7.382218 CGATTCTGAAAGGTGCAACTTTATTTT 59.618 33.333 29.00 13.35 40.55 1.82
3174 4306 8.962884 ATTCTGAAAGGTGCAACTTTATTTTT 57.037 26.923 29.00 11.99 40.55 1.94
3175 4307 8.419076 TTCTGAAAGGTGCAACTTTATTTTTC 57.581 30.769 29.00 16.30 40.55 2.29
3176 4308 7.781056 TCTGAAAGGTGCAACTTTATTTTTCT 58.219 30.769 29.00 5.12 40.55 2.52
3177 4309 7.920682 TCTGAAAGGTGCAACTTTATTTTTCTC 59.079 33.333 29.00 14.86 40.55 2.87
3178 4310 6.695278 TGAAAGGTGCAACTTTATTTTTCTCG 59.305 34.615 29.00 0.00 40.55 4.04
3179 4311 6.385649 AAGGTGCAACTTTATTTTTCTCGA 57.614 33.333 12.33 0.00 32.75 4.04
3182 4314 8.106247 AGGTGCAACTTTATTTTTCTCGAATA 57.894 30.769 0.00 0.00 36.74 1.75
3183 4315 8.739972 AGGTGCAACTTTATTTTTCTCGAATAT 58.260 29.630 0.00 0.00 36.74 1.28
3184 4316 8.798153 GGTGCAACTTTATTTTTCTCGAATATG 58.202 33.333 0.00 0.00 36.74 1.78
3185 4317 8.313931 GTGCAACTTTATTTTTCTCGAATATGC 58.686 33.333 0.00 0.00 0.00 3.14
3186 4318 8.026026 TGCAACTTTATTTTTCTCGAATATGCA 58.974 29.630 0.00 0.00 32.87 3.96
3187 4319 8.313931 GCAACTTTATTTTTCTCGAATATGCAC 58.686 33.333 0.00 0.00 0.00 4.57
3188 4320 8.515473 CAACTTTATTTTTCTCGAATATGCACG 58.485 33.333 0.00 0.00 0.00 5.34
3189 4321 7.970384 ACTTTATTTTTCTCGAATATGCACGA 58.030 30.769 0.00 0.00 37.03 4.35
3230 4362 7.713764 TTAAAGAAGAAAGGCAAAAGAATGC 57.286 32.000 0.00 0.00 45.67 3.56
3237 4369 3.820595 GCAAAAGAATGCCTCCACC 57.179 52.632 0.00 0.00 40.49 4.61
3238 4370 0.968405 GCAAAAGAATGCCTCCACCA 59.032 50.000 0.00 0.00 40.49 4.17
3239 4371 1.344114 GCAAAAGAATGCCTCCACCAA 59.656 47.619 0.00 0.00 40.49 3.67
3240 4372 2.611224 GCAAAAGAATGCCTCCACCAAG 60.611 50.000 0.00 0.00 40.49 3.61
3241 4373 2.892852 CAAAAGAATGCCTCCACCAAGA 59.107 45.455 0.00 0.00 0.00 3.02
3242 4374 3.463048 AAAGAATGCCTCCACCAAGAT 57.537 42.857 0.00 0.00 0.00 2.40
3243 4375 2.725221 AGAATGCCTCCACCAAGATC 57.275 50.000 0.00 0.00 0.00 2.75
3244 4376 1.918262 AGAATGCCTCCACCAAGATCA 59.082 47.619 0.00 0.00 0.00 2.92
3245 4377 2.512896 AGAATGCCTCCACCAAGATCAT 59.487 45.455 0.00 0.00 0.00 2.45
3246 4378 3.718434 AGAATGCCTCCACCAAGATCATA 59.282 43.478 0.00 0.00 0.00 2.15
3247 4379 3.498774 ATGCCTCCACCAAGATCATAC 57.501 47.619 0.00 0.00 0.00 2.39
3248 4380 2.195727 TGCCTCCACCAAGATCATACA 58.804 47.619 0.00 0.00 0.00 2.29
3249 4381 2.575735 TGCCTCCACCAAGATCATACAA 59.424 45.455 0.00 0.00 0.00 2.41
3250 4382 3.209410 GCCTCCACCAAGATCATACAAG 58.791 50.000 0.00 0.00 0.00 3.16
3251 4383 3.370953 GCCTCCACCAAGATCATACAAGT 60.371 47.826 0.00 0.00 0.00 3.16
3252 4384 4.848357 CCTCCACCAAGATCATACAAGTT 58.152 43.478 0.00 0.00 0.00 2.66
3253 4385 5.629133 GCCTCCACCAAGATCATACAAGTTA 60.629 44.000 0.00 0.00 0.00 2.24
3254 4386 5.817816 CCTCCACCAAGATCATACAAGTTAC 59.182 44.000 0.00 0.00 0.00 2.50
3255 4387 6.352222 CCTCCACCAAGATCATACAAGTTACT 60.352 42.308 0.00 0.00 0.00 2.24
3256 4388 7.016153 TCCACCAAGATCATACAAGTTACTT 57.984 36.000 0.00 0.00 0.00 2.24
3257 4389 8.141298 TCCACCAAGATCATACAAGTTACTTA 57.859 34.615 0.00 0.00 0.00 2.24
3258 4390 8.038944 TCCACCAAGATCATACAAGTTACTTAC 58.961 37.037 0.00 0.00 0.00 2.34
3259 4391 7.822334 CCACCAAGATCATACAAGTTACTTACA 59.178 37.037 0.00 0.00 0.00 2.41
3260 4392 9.383519 CACCAAGATCATACAAGTTACTTACAT 57.616 33.333 0.00 0.00 0.00 2.29
3261 4393 9.959721 ACCAAGATCATACAAGTTACTTACATT 57.040 29.630 0.00 0.00 0.00 2.71
3268 4400 9.577110 TCATACAAGTTACTTACATTTACTCCG 57.423 33.333 0.00 0.00 0.00 4.63
3269 4401 6.716898 ACAAGTTACTTACATTTACTCCGC 57.283 37.500 0.00 0.00 0.00 5.54
3270 4402 5.640783 ACAAGTTACTTACATTTACTCCGCC 59.359 40.000 0.00 0.00 0.00 6.13
3271 4403 5.410355 AGTTACTTACATTTACTCCGCCA 57.590 39.130 0.00 0.00 0.00 5.69
3272 4404 5.985911 AGTTACTTACATTTACTCCGCCAT 58.014 37.500 0.00 0.00 0.00 4.40
3273 4405 5.815740 AGTTACTTACATTTACTCCGCCATG 59.184 40.000 0.00 0.00 0.00 3.66
3274 4406 4.481368 ACTTACATTTACTCCGCCATGA 57.519 40.909 0.00 0.00 0.00 3.07
3275 4407 4.839121 ACTTACATTTACTCCGCCATGAA 58.161 39.130 0.00 0.00 0.00 2.57
3276 4408 5.250200 ACTTACATTTACTCCGCCATGAAA 58.750 37.500 0.00 0.00 0.00 2.69
3277 4409 5.354234 ACTTACATTTACTCCGCCATGAAAG 59.646 40.000 0.00 0.00 0.00 2.62
3278 4410 3.016736 ACATTTACTCCGCCATGAAAGG 58.983 45.455 0.00 0.00 0.00 3.11
3279 4411 2.871096 TTTACTCCGCCATGAAAGGT 57.129 45.000 0.00 0.00 0.00 3.50
3280 4412 2.107950 TTACTCCGCCATGAAAGGTG 57.892 50.000 0.00 0.00 38.90 4.00
3281 4413 0.392461 TACTCCGCCATGAAAGGTGC 60.392 55.000 0.00 0.00 37.85 5.01
3434 4569 0.957395 CCGTCATGGCCCTATCATGC 60.957 60.000 0.00 0.00 41.11 4.06
3438 4573 3.683564 CGTCATGGCCCTATCATGCATAT 60.684 47.826 0.00 0.00 41.11 1.78
3447 4582 5.105063 CCCTATCATGCATATGTCGTACTG 58.895 45.833 0.00 0.00 35.73 2.74
3584 4976 5.334414 GCTATAATCAAGTTGGCTGAATCCG 60.334 44.000 2.34 0.00 0.00 4.18
3613 5005 7.464830 GTGCAACTTACAATATGACGTATCT 57.535 36.000 0.00 0.00 0.00 1.98
3614 5006 7.337718 GTGCAACTTACAATATGACGTATCTG 58.662 38.462 0.00 0.00 0.00 2.90
3615 5007 6.019075 TGCAACTTACAATATGACGTATCTGC 60.019 38.462 0.00 0.00 0.00 4.26
3616 5008 6.019075 GCAACTTACAATATGACGTATCTGCA 60.019 38.462 0.00 0.00 0.00 4.41
3617 5009 7.465379 GCAACTTACAATATGACGTATCTGCAA 60.465 37.037 0.00 0.00 0.00 4.08
3618 5010 7.464830 ACTTACAATATGACGTATCTGCAAC 57.535 36.000 0.00 0.00 0.00 4.17
3619 5011 7.039270 ACTTACAATATGACGTATCTGCAACA 58.961 34.615 0.00 0.00 0.00 3.33
3620 5012 7.547722 ACTTACAATATGACGTATCTGCAACAA 59.452 33.333 0.00 0.00 0.00 2.83
3621 5013 6.735678 ACAATATGACGTATCTGCAACAAA 57.264 33.333 0.00 0.00 0.00 2.83
3622 5014 7.139896 ACAATATGACGTATCTGCAACAAAA 57.860 32.000 0.00 0.00 0.00 2.44
3623 5015 7.589395 ACAATATGACGTATCTGCAACAAAAA 58.411 30.769 0.00 0.00 0.00 1.94
3653 5045 7.044510 ACTCACAATACGACGTGTTTATTATCG 60.045 37.037 11.56 0.00 38.71 2.92
3660 5052 7.566858 ACGACGTGTTTATTATCGTACTTTT 57.433 32.000 0.00 0.00 43.72 2.27
3787 5180 0.904865 TGTTCGAGGCCCAGATGAGT 60.905 55.000 0.00 0.00 0.00 3.41
4111 5504 1.135286 GCTTTTCTGGCCTATGTGTGC 60.135 52.381 3.32 0.00 0.00 4.57
4141 5534 4.308458 TGGAGGGTGTTCGCCGTG 62.308 66.667 2.30 0.00 0.00 4.94
4227 5659 1.400494 GTTGCTCAGGTTCAACAACGT 59.600 47.619 0.00 0.00 41.46 3.99
4276 5708 3.340034 TGAAGACACGGTGTGAACTTTT 58.660 40.909 20.06 3.30 36.96 2.27
4343 5777 3.868077 GTGGCATGTCTCTCTCATGTAAC 59.132 47.826 0.00 3.64 42.94 2.50
4389 5824 5.811399 ACACAACAATTCAAGTCTCGAAA 57.189 34.783 0.00 0.00 0.00 3.46
4391 5826 6.795399 ACACAACAATTCAAGTCTCGAAAAT 58.205 32.000 0.00 0.00 0.00 1.82
4439 5874 5.548056 ACAGAATAAGGAGGAAAGGACAGAA 59.452 40.000 0.00 0.00 0.00 3.02
4454 5889 4.287067 AGGACAGAAGGATTTGCTTGAGTA 59.713 41.667 0.00 0.00 0.00 2.59
4455 5890 5.045286 AGGACAGAAGGATTTGCTTGAGTAT 60.045 40.000 0.00 0.00 0.00 2.12
4456 5891 5.065731 GGACAGAAGGATTTGCTTGAGTATG 59.934 44.000 0.00 0.00 0.00 2.39
4520 5955 5.012239 TGATTTGCTAGCAAGATTCCAACT 58.988 37.500 27.82 0.75 37.24 3.16
4574 6009 9.424319 TCTACTTTCAGTTCAGCTATTAAGTTG 57.576 33.333 0.00 0.00 35.41 3.16
4585 6020 9.973450 TTCAGCTATTAAGTTGTTGCAATTTAA 57.027 25.926 0.59 6.64 35.58 1.52
4753 6192 2.055042 GGAGCTCCTTCCTCTCGCA 61.055 63.158 26.25 0.00 34.27 5.10
4754 6193 1.608717 GGAGCTCCTTCCTCTCGCAA 61.609 60.000 26.25 0.00 34.27 4.85
4780 6219 2.040544 CGGTGTGGGGCATCTTGAC 61.041 63.158 0.00 0.00 0.00 3.18
4806 6245 4.266070 GCGCGTGCCTCGGATCTA 62.266 66.667 10.56 0.00 40.26 1.98
4815 6254 1.549037 GCCTCGGATCTAGGTCTCCAT 60.549 57.143 2.34 0.00 36.43 3.41
4820 6259 2.264455 GGATCTAGGTCTCCATGGCAT 58.736 52.381 6.96 0.00 0.00 4.40
4855 6294 2.989639 CGGGCCATCTGACCTTGA 59.010 61.111 4.39 0.00 0.00 3.02
4885 6332 1.380785 CGGTGTGGAGGGCCTAGTA 60.381 63.158 5.73 0.00 34.31 1.82
4891 6338 0.397254 TGGAGGGCCTAGTAGACAGC 60.397 60.000 5.73 0.00 34.31 4.40
5011 6460 2.947652 TCCTAAACGGAGATTCGTCGAT 59.052 45.455 0.00 0.00 43.07 3.59
5032 6481 2.907696 TCAGATCCGGGTGAAAACCTTA 59.092 45.455 0.00 0.00 0.00 2.69
5050 6500 3.306502 CCTTACTCTCGGCAGTTACCAAA 60.307 47.826 0.00 0.00 0.00 3.28
5126 6577 5.028549 GAGAAGCTCCAAACATCTATCCA 57.971 43.478 0.00 0.00 0.00 3.41
5138 6589 0.481567 TCTATCCACTACCTCCGGGG 59.518 60.000 0.00 0.00 41.89 5.73
5139 6590 0.542232 CTATCCACTACCTCCGGGGG 60.542 65.000 22.38 22.38 40.03 5.40
5143 6594 1.202769 CCACTACCTCCGGGGGAAAA 61.203 60.000 32.33 11.36 40.03 2.29
5157 6608 2.092914 GGGGAAAACCAGATCAGTCGAT 60.093 50.000 0.00 0.00 42.91 3.59
5158 6609 3.610911 GGGAAAACCAGATCAGTCGATT 58.389 45.455 0.00 0.00 39.85 3.34
5177 6628 2.951745 GATGACGACGGCGCTCTG 60.952 66.667 12.58 0.00 42.48 3.35
5220 6671 4.009675 GTCATTTCTGGAGGTGTGCATTA 58.990 43.478 0.00 0.00 0.00 1.90
5221 6672 4.641989 GTCATTTCTGGAGGTGTGCATTAT 59.358 41.667 0.00 0.00 0.00 1.28
5237 6688 3.370953 GCATTATCTCAAGGGACCAGTGT 60.371 47.826 0.00 0.00 0.00 3.55
5238 6689 3.981071 TTATCTCAAGGGACCAGTGTG 57.019 47.619 0.00 0.00 0.00 3.82
5246 6697 1.525077 GGACCAGTGTGCGGTTTCA 60.525 57.895 0.00 0.00 36.69 2.69
5249 6700 1.095228 ACCAGTGTGCGGTTTCAGTG 61.095 55.000 0.00 0.00 30.53 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.858381 ACATAGACTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
10 11 6.500589 AACATAGACTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
11 12 5.950544 AACATAGACTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
12 13 7.052142 AGTAACATAGACTAGTAACATGCCC 57.948 40.000 0.00 0.00 0.00 5.36
13 14 8.081025 GGTAGTAACATAGACTAGTAACATGCC 58.919 40.741 0.00 0.00 30.08 4.40
14 15 8.848182 AGGTAGTAACATAGACTAGTAACATGC 58.152 37.037 0.00 0.00 30.08 4.06
24 25 8.384718 CCCACTATAGAGGTAGTAACATAGACT 58.615 40.741 14.29 0.00 33.29 3.24
25 26 7.611079 CCCCACTATAGAGGTAGTAACATAGAC 59.389 44.444 14.29 0.00 33.29 2.59
26 27 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
27 28 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
28 29 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
29 30 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
30 31 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
31 32 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
32 33 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
33 34 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
34 35 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
35 36 5.769162 GTGTTACTCCCCACTATAGAGGTAG 59.231 48.000 14.29 12.87 31.70 3.18
36 37 5.194334 TGTGTTACTCCCCACTATAGAGGTA 59.806 44.000 14.29 2.62 32.76 3.08
37 38 4.016851 TGTGTTACTCCCCACTATAGAGGT 60.017 45.833 14.29 0.00 32.76 3.85
38 39 4.543689 TGTGTTACTCCCCACTATAGAGG 58.456 47.826 6.78 8.10 32.76 3.69
39 40 5.598830 ACATGTGTTACTCCCCACTATAGAG 59.401 44.000 6.78 0.00 32.76 2.43
40 41 5.362717 CACATGTGTTACTCCCCACTATAGA 59.637 44.000 18.03 0.00 32.76 1.98
41 42 5.128827 ACACATGTGTTACTCCCCACTATAG 59.871 44.000 25.76 0.00 41.83 1.31
42 43 5.027460 ACACATGTGTTACTCCCCACTATA 58.973 41.667 25.76 0.00 41.83 1.31
43 44 3.844211 ACACATGTGTTACTCCCCACTAT 59.156 43.478 25.76 0.00 41.83 2.12
44 45 3.007506 CACACATGTGTTACTCCCCACTA 59.992 47.826 28.64 0.00 42.83 2.74
45 46 2.054799 ACACATGTGTTACTCCCCACT 58.945 47.619 25.76 0.00 41.83 4.00
46 47 2.151202 CACACATGTGTTACTCCCCAC 58.849 52.381 28.64 0.00 42.83 4.61
47 48 1.073125 CCACACATGTGTTACTCCCCA 59.927 52.381 28.64 0.00 42.83 4.96
48 49 1.073284 ACCACACATGTGTTACTCCCC 59.927 52.381 28.64 0.00 42.83 4.81
49 50 2.561478 ACCACACATGTGTTACTCCC 57.439 50.000 28.64 0.00 42.83 4.30
50 51 4.382291 TGTTACCACACATGTGTTACTCC 58.618 43.478 28.64 16.35 42.83 3.85
51 52 5.927030 CATGTTACCACACATGTGTTACTC 58.073 41.667 28.64 17.16 46.20 2.59
52 53 5.940192 CATGTTACCACACATGTGTTACT 57.060 39.130 28.64 15.53 46.20 2.24
60 61 2.040278 AGTGCTCCATGTTACCACACAT 59.960 45.455 0.00 0.00 37.93 3.21
61 62 1.419762 AGTGCTCCATGTTACCACACA 59.580 47.619 0.00 0.00 35.03 3.72
62 63 2.185004 AGTGCTCCATGTTACCACAC 57.815 50.000 0.00 0.00 35.03 3.82
63 64 2.105649 TGAAGTGCTCCATGTTACCACA 59.894 45.455 0.00 0.00 37.31 4.17
64 65 2.778299 TGAAGTGCTCCATGTTACCAC 58.222 47.619 0.00 0.00 0.00 4.16
65 66 3.719268 ATGAAGTGCTCCATGTTACCA 57.281 42.857 0.00 0.00 0.00 3.25
66 67 6.699575 ATAAATGAAGTGCTCCATGTTACC 57.300 37.500 0.00 0.00 0.00 2.85
67 68 8.345565 CCTAATAAATGAAGTGCTCCATGTTAC 58.654 37.037 0.00 0.00 0.00 2.50
68 69 7.013274 GCCTAATAAATGAAGTGCTCCATGTTA 59.987 37.037 0.00 0.00 0.00 2.41
69 70 6.183360 GCCTAATAAATGAAGTGCTCCATGTT 60.183 38.462 0.00 0.00 0.00 2.71
70 71 5.300286 GCCTAATAAATGAAGTGCTCCATGT 59.700 40.000 0.00 0.00 0.00 3.21
71 72 5.533903 AGCCTAATAAATGAAGTGCTCCATG 59.466 40.000 0.00 0.00 0.00 3.66
72 73 5.699143 AGCCTAATAAATGAAGTGCTCCAT 58.301 37.500 0.00 0.00 0.00 3.41
73 74 5.116084 AGCCTAATAAATGAAGTGCTCCA 57.884 39.130 0.00 0.00 0.00 3.86
74 75 8.314751 TCTATAGCCTAATAAATGAAGTGCTCC 58.685 37.037 0.00 0.00 0.00 4.70
75 76 9.145865 GTCTATAGCCTAATAAATGAAGTGCTC 57.854 37.037 0.00 0.00 0.00 4.26
76 77 8.651389 TGTCTATAGCCTAATAAATGAAGTGCT 58.349 33.333 0.00 0.00 0.00 4.40
77 78 8.713271 GTGTCTATAGCCTAATAAATGAAGTGC 58.287 37.037 0.00 0.00 0.00 4.40
78 79 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
102 103 7.108194 ACATCACACATATCAAGACAAGATGT 58.892 34.615 0.00 0.00 37.95 3.06
103 104 7.549615 ACATCACACATATCAAGACAAGATG 57.450 36.000 0.00 0.00 36.24 2.90
104 105 9.102757 GTAACATCACACATATCAAGACAAGAT 57.897 33.333 0.00 0.00 0.00 2.40
105 106 8.314021 AGTAACATCACACATATCAAGACAAGA 58.686 33.333 0.00 0.00 0.00 3.02
106 107 8.484641 AGTAACATCACACATATCAAGACAAG 57.515 34.615 0.00 0.00 0.00 3.16
107 108 8.093927 TGAGTAACATCACACATATCAAGACAA 58.906 33.333 0.00 0.00 0.00 3.18
108 109 7.610865 TGAGTAACATCACACATATCAAGACA 58.389 34.615 0.00 0.00 0.00 3.41
109 110 8.654230 ATGAGTAACATCACACATATCAAGAC 57.346 34.615 0.00 0.00 33.46 3.01
110 111 9.750125 GTATGAGTAACATCACACATATCAAGA 57.250 33.333 0.00 0.00 40.07 3.02
111 112 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
117 118 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
118 119 8.803397 ACTACTAGTATGAGTAACATCACACA 57.197 34.615 2.33 0.00 40.07 3.72
154 155 9.606631 AATGAAGAAAGAGATGATAGTGGTAAC 57.393 33.333 0.00 0.00 0.00 2.50
165 166 9.674824 GGCATGTAATAAATGAAGAAAGAGATG 57.325 33.333 0.00 0.00 0.00 2.90
166 167 9.412460 TGGCATGTAATAAATGAAGAAAGAGAT 57.588 29.630 0.00 0.00 0.00 2.75
167 168 8.677300 GTGGCATGTAATAAATGAAGAAAGAGA 58.323 33.333 0.00 0.00 0.00 3.10
168 169 8.461222 TGTGGCATGTAATAAATGAAGAAAGAG 58.539 33.333 0.00 0.00 0.00 2.85
169 170 8.347004 TGTGGCATGTAATAAATGAAGAAAGA 57.653 30.769 0.00 0.00 0.00 2.52
170 171 9.241317 GATGTGGCATGTAATAAATGAAGAAAG 57.759 33.333 0.00 0.00 0.00 2.62
171 172 8.747471 TGATGTGGCATGTAATAAATGAAGAAA 58.253 29.630 0.00 0.00 0.00 2.52
172 173 8.291191 TGATGTGGCATGTAATAAATGAAGAA 57.709 30.769 0.00 0.00 0.00 2.52
173 174 7.878547 TGATGTGGCATGTAATAAATGAAGA 57.121 32.000 0.00 0.00 0.00 2.87
174 175 8.573885 AGATGATGTGGCATGTAATAAATGAAG 58.426 33.333 0.00 0.00 0.00 3.02
175 176 8.467963 AGATGATGTGGCATGTAATAAATGAA 57.532 30.769 0.00 0.00 0.00 2.57
176 177 9.743581 ATAGATGATGTGGCATGTAATAAATGA 57.256 29.630 0.00 0.00 29.35 2.57
182 183 8.796475 GGTTAAATAGATGATGTGGCATGTAAT 58.204 33.333 0.00 0.00 29.35 1.89
183 184 7.998383 AGGTTAAATAGATGATGTGGCATGTAA 59.002 33.333 0.00 0.00 29.35 2.41
184 185 7.517320 AGGTTAAATAGATGATGTGGCATGTA 58.483 34.615 0.00 0.00 0.00 2.29
185 186 6.367983 AGGTTAAATAGATGATGTGGCATGT 58.632 36.000 0.00 0.00 0.00 3.21
186 187 6.889301 AGGTTAAATAGATGATGTGGCATG 57.111 37.500 0.00 0.00 0.00 4.06
187 188 7.977818 TCTAGGTTAAATAGATGATGTGGCAT 58.022 34.615 0.00 0.00 0.00 4.40
188 189 7.373617 TCTAGGTTAAATAGATGATGTGGCA 57.626 36.000 0.00 0.00 0.00 4.92
205 206 8.639761 GGTAGTAACATCACACATATCTAGGTT 58.360 37.037 0.00 0.00 0.00 3.50
206 207 8.005388 AGGTAGTAACATCACACATATCTAGGT 58.995 37.037 0.00 0.00 0.00 3.08
207 208 8.410673 AGGTAGTAACATCACACATATCTAGG 57.589 38.462 0.00 0.00 0.00 3.02
210 211 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
211 212 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
214 215 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
215 216 8.357290 AGTAACATAGGTAGTAACATCACACA 57.643 34.615 0.00 0.00 0.00 3.72
216 217 7.919621 GGAGTAACATAGGTAGTAACATCACAC 59.080 40.741 0.00 0.00 0.00 3.82
217 218 7.837689 AGGAGTAACATAGGTAGTAACATCACA 59.162 37.037 0.00 0.00 0.00 3.58
218 219 8.235359 AGGAGTAACATAGGTAGTAACATCAC 57.765 38.462 0.00 0.00 0.00 3.06
219 220 9.347240 GTAGGAGTAACATAGGTAGTAACATCA 57.653 37.037 0.00 0.00 0.00 3.07
220 221 9.571816 AGTAGGAGTAACATAGGTAGTAACATC 57.428 37.037 0.00 0.00 0.00 3.06
221 222 9.352191 CAGTAGGAGTAACATAGGTAGTAACAT 57.648 37.037 0.00 0.00 0.00 2.71
222 223 8.331740 ACAGTAGGAGTAACATAGGTAGTAACA 58.668 37.037 0.00 0.00 0.00 2.41
223 224 8.619546 CACAGTAGGAGTAACATAGGTAGTAAC 58.380 40.741 0.00 0.00 0.00 2.50
224 225 7.776969 CCACAGTAGGAGTAACATAGGTAGTAA 59.223 40.741 0.00 0.00 0.00 2.24
225 226 7.285566 CCACAGTAGGAGTAACATAGGTAGTA 58.714 42.308 0.00 0.00 0.00 1.82
226 227 6.127793 CCACAGTAGGAGTAACATAGGTAGT 58.872 44.000 0.00 0.00 0.00 2.73
227 228 5.535406 CCCACAGTAGGAGTAACATAGGTAG 59.465 48.000 0.00 0.00 0.00 3.18
228 229 5.043881 ACCCACAGTAGGAGTAACATAGGTA 60.044 44.000 0.00 0.00 0.00 3.08
229 230 4.264713 ACCCACAGTAGGAGTAACATAGGT 60.265 45.833 0.00 0.00 0.00 3.08
230 231 4.287552 ACCCACAGTAGGAGTAACATAGG 58.712 47.826 0.00 0.00 0.00 2.57
231 232 6.636562 CTACCCACAGTAGGAGTAACATAG 57.363 45.833 0.00 0.00 44.19 2.23
243 244 7.682741 GCGACATAATTTAGACTACCCACAGTA 60.683 40.741 0.00 0.00 0.00 2.74
244 245 6.570692 CGACATAATTTAGACTACCCACAGT 58.429 40.000 0.00 0.00 0.00 3.55
245 246 5.462398 GCGACATAATTTAGACTACCCACAG 59.538 44.000 0.00 0.00 0.00 3.66
246 247 5.128171 AGCGACATAATTTAGACTACCCACA 59.872 40.000 0.00 0.00 0.00 4.17
247 248 5.598769 AGCGACATAATTTAGACTACCCAC 58.401 41.667 0.00 0.00 0.00 4.61
248 249 5.864418 AGCGACATAATTTAGACTACCCA 57.136 39.130 0.00 0.00 0.00 4.51
249 250 8.828688 AATAAGCGACATAATTTAGACTACCC 57.171 34.615 0.00 0.00 0.00 3.69
263 264 9.682465 TCCATCTATACTAGTAATAAGCGACAT 57.318 33.333 6.70 0.00 0.00 3.06
264 265 9.163899 CTCCATCTATACTAGTAATAAGCGACA 57.836 37.037 6.70 0.00 0.00 4.35
265 266 8.614346 CCTCCATCTATACTAGTAATAAGCGAC 58.386 40.741 6.70 0.00 0.00 5.19
266 267 7.282675 GCCTCCATCTATACTAGTAATAAGCGA 59.717 40.741 6.70 0.00 0.00 4.93
267 268 7.283580 AGCCTCCATCTATACTAGTAATAAGCG 59.716 40.741 6.70 0.98 0.00 4.68
268 269 8.410141 CAGCCTCCATCTATACTAGTAATAAGC 58.590 40.741 6.70 1.49 0.00 3.09
269 270 8.410141 GCAGCCTCCATCTATACTAGTAATAAG 58.590 40.741 6.70 5.43 0.00 1.73
270 271 7.893833 TGCAGCCTCCATCTATACTAGTAATAA 59.106 37.037 6.70 0.00 0.00 1.40
271 272 7.410991 TGCAGCCTCCATCTATACTAGTAATA 58.589 38.462 6.70 0.00 0.00 0.98
272 273 6.256819 TGCAGCCTCCATCTATACTAGTAAT 58.743 40.000 6.70 0.00 0.00 1.89
273 274 5.641155 TGCAGCCTCCATCTATACTAGTAA 58.359 41.667 6.70 0.00 0.00 2.24
274 275 5.222151 ACTGCAGCCTCCATCTATACTAGTA 60.222 44.000 15.27 4.77 0.00 1.82
275 276 4.085733 CTGCAGCCTCCATCTATACTAGT 58.914 47.826 0.00 0.00 0.00 2.57
276 277 4.085733 ACTGCAGCCTCCATCTATACTAG 58.914 47.826 15.27 0.00 0.00 2.57
277 278 4.082845 GACTGCAGCCTCCATCTATACTA 58.917 47.826 15.27 0.00 0.00 1.82
278 279 2.896685 GACTGCAGCCTCCATCTATACT 59.103 50.000 15.27 0.00 0.00 2.12
279 280 2.352225 CGACTGCAGCCTCCATCTATAC 60.352 54.545 15.27 0.00 0.00 1.47
280 281 1.889170 CGACTGCAGCCTCCATCTATA 59.111 52.381 15.27 0.00 0.00 1.31
281 282 0.678395 CGACTGCAGCCTCCATCTAT 59.322 55.000 15.27 0.00 0.00 1.98
282 283 0.395724 TCGACTGCAGCCTCCATCTA 60.396 55.000 15.27 0.00 0.00 1.98
283 284 1.260538 TTCGACTGCAGCCTCCATCT 61.261 55.000 15.27 0.00 0.00 2.90
284 285 0.809241 CTTCGACTGCAGCCTCCATC 60.809 60.000 15.27 1.15 0.00 3.51
285 286 1.220206 CTTCGACTGCAGCCTCCAT 59.780 57.895 15.27 0.00 0.00 3.41
286 287 2.659016 CTTCGACTGCAGCCTCCA 59.341 61.111 15.27 0.00 0.00 3.86
287 288 2.125350 CCTTCGACTGCAGCCTCC 60.125 66.667 15.27 0.00 0.00 4.30
288 289 2.125350 CCCTTCGACTGCAGCCTC 60.125 66.667 15.27 3.64 0.00 4.70
289 290 4.400961 GCCCTTCGACTGCAGCCT 62.401 66.667 15.27 0.00 0.00 4.58
292 293 2.811317 GACGCCCTTCGACTGCAG 60.811 66.667 13.48 13.48 41.67 4.41
293 294 4.373116 GGACGCCCTTCGACTGCA 62.373 66.667 0.00 0.00 41.67 4.41
294 295 4.373116 TGGACGCCCTTCGACTGC 62.373 66.667 0.00 0.00 41.67 4.40
295 296 2.125912 CTGGACGCCCTTCGACTG 60.126 66.667 0.00 0.00 41.67 3.51
296 297 4.070552 GCTGGACGCCCTTCGACT 62.071 66.667 0.00 0.00 41.67 4.18
297 298 3.665675 ATGCTGGACGCCCTTCGAC 62.666 63.158 0.00 0.00 41.67 4.20
298 299 3.390521 ATGCTGGACGCCCTTCGA 61.391 61.111 0.00 0.00 41.67 3.71
299 300 2.930385 ATCATGCTGGACGCCCTTCG 62.930 60.000 0.00 0.00 45.38 3.79
300 301 0.106708 TATCATGCTGGACGCCCTTC 59.893 55.000 0.00 0.00 38.05 3.46
301 302 0.767375 ATATCATGCTGGACGCCCTT 59.233 50.000 0.00 0.00 38.05 3.95
302 303 0.767375 AATATCATGCTGGACGCCCT 59.233 50.000 0.00 0.00 38.05 5.19
303 304 0.877071 CAATATCATGCTGGACGCCC 59.123 55.000 0.00 0.00 38.05 6.13
304 305 1.882912 TCAATATCATGCTGGACGCC 58.117 50.000 0.00 0.00 38.05 5.68
305 306 4.436584 GCTATTCAATATCATGCTGGACGC 60.437 45.833 0.00 0.00 39.77 5.19
306 307 4.692155 TGCTATTCAATATCATGCTGGACG 59.308 41.667 0.00 0.00 0.00 4.79
307 308 6.754702 ATGCTATTCAATATCATGCTGGAC 57.245 37.500 0.00 0.00 0.00 4.02
308 309 7.501225 CCATATGCTATTCAATATCATGCTGGA 59.499 37.037 14.07 0.00 32.76 3.86
309 310 7.255486 CCCATATGCTATTCAATATCATGCTGG 60.255 40.741 13.08 13.08 31.87 4.85
310 311 7.501225 TCCCATATGCTATTCAATATCATGCTG 59.499 37.037 4.30 2.65 0.00 4.41
311 312 7.580007 TCCCATATGCTATTCAATATCATGCT 58.420 34.615 4.30 0.00 0.00 3.79
339 340 1.080025 CTTCCGACAAGGGACCGTC 60.080 63.158 0.00 0.00 41.52 4.79
397 398 2.029623 TGGGAGGTCGTATTAGAGTGC 58.970 52.381 0.00 0.00 0.00 4.40
500 504 5.779529 ATCTTGTTTGACAATCAGCAACT 57.220 34.783 0.00 0.00 37.48 3.16
630 640 1.544246 TCGGTCGTCACATGATGAACT 59.456 47.619 15.39 0.00 43.72 3.01
638 648 0.101399 GATCAGCTCGGTCGTCACAT 59.899 55.000 0.00 0.00 0.00 3.21
685 700 6.406400 CCACTTGTTTTTGGTGTATTGAAGGA 60.406 38.462 0.00 0.00 0.00 3.36
692 707 4.340950 CCACTCCACTTGTTTTTGGTGTAT 59.659 41.667 0.00 0.00 37.48 2.29
699 714 4.278310 AGCTAACCACTCCACTTGTTTTT 58.722 39.130 0.00 0.00 0.00 1.94
700 715 3.898482 AGCTAACCACTCCACTTGTTTT 58.102 40.909 0.00 0.00 0.00 2.43
714 729 4.577834 TGTTTGGTTGCTTTAGCTAACC 57.422 40.909 19.95 19.95 44.67 2.85
812 828 2.364324 AGCTGACGCCCGAATAGATTTA 59.636 45.455 0.00 0.00 36.60 1.40
814 830 0.753262 AGCTGACGCCCGAATAGATT 59.247 50.000 0.00 0.00 36.60 2.40
834 850 2.198827 AATTCCCAACGAGCATCACA 57.801 45.000 0.00 0.00 33.17 3.58
851 867 5.011635 GGTCAACTTGTCCAAATTGGGTAAT 59.988 40.000 12.67 0.00 38.32 1.89
862 878 2.420722 GTCGTTTTGGTCAACTTGTCCA 59.579 45.455 3.84 3.84 33.88 4.02
864 880 2.538132 CGGTCGTTTTGGTCAACTTGTC 60.538 50.000 0.00 0.00 0.00 3.18
880 896 0.810031 CCAGAAAGGGTATGCGGTCG 60.810 60.000 0.00 0.00 0.00 4.79
883 907 2.180204 CGCCAGAAAGGGTATGCGG 61.180 63.158 0.00 0.00 38.46 5.69
903 927 4.327898 TGTATACAATTGAGGCGAACGAAC 59.672 41.667 13.59 0.00 0.00 3.95
907 931 7.330946 TGCTATATGTATACAATTGAGGCGAAC 59.669 37.037 13.59 2.28 0.00 3.95
912 936 8.435430 CGTTGTGCTATATGTATACAATTGAGG 58.565 37.037 13.59 0.26 34.27 3.86
920 944 4.387862 GTGGCCGTTGTGCTATATGTATAC 59.612 45.833 0.00 0.00 0.00 1.47
969 1185 3.071206 GCCAGAGTGCGGAGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
1410 1629 1.913778 TGCTGAGGTACTTCCACGTA 58.086 50.000 2.10 0.00 41.55 3.57
1952 2180 4.201666 CGCAGCAGTAAGAAGAAACTGATC 60.202 45.833 6.65 0.00 44.79 2.92
1989 2858 6.208644 AGAATGAGAACAAACAAAATGACCG 58.791 36.000 0.00 0.00 0.00 4.79
2059 2928 5.526115 TCCAAGTAACTGACGTTAACTGAG 58.474 41.667 3.71 0.00 37.36 3.35
2156 3034 3.073062 AGGTACAGATTCAAAGGCACACT 59.927 43.478 0.00 0.00 0.00 3.55
2206 3084 8.865090 TGTATCCCTTTAAATGTTGTTTCACAT 58.135 29.630 0.00 0.00 39.17 3.21
2207 3085 8.239038 TGTATCCCTTTAAATGTTGTTTCACA 57.761 30.769 0.00 0.00 0.00 3.58
2213 3091 8.472007 TGTCTTTGTATCCCTTTAAATGTTGT 57.528 30.769 0.00 0.00 0.00 3.32
2218 3096 8.960591 CATGACTGTCTTTGTATCCCTTTAAAT 58.039 33.333 9.51 0.00 0.00 1.40
2238 3116 3.072184 GTGGCTGATATTCCCTCATGACT 59.928 47.826 0.00 0.00 0.00 3.41
2239 3117 3.181451 TGTGGCTGATATTCCCTCATGAC 60.181 47.826 0.00 0.00 0.00 3.06
2321 3199 5.773239 TTTATGTTCGAAGGTCGTGATTC 57.227 39.130 0.00 0.00 41.35 2.52
2322 3200 6.737254 ATTTTATGTTCGAAGGTCGTGATT 57.263 33.333 0.00 0.00 41.35 2.57
2324 3202 6.645827 TGTAATTTTATGTTCGAAGGTCGTGA 59.354 34.615 0.00 0.00 41.35 4.35
2325 3203 6.823531 TGTAATTTTATGTTCGAAGGTCGTG 58.176 36.000 0.00 0.00 41.35 4.35
2327 3205 7.906160 AGATGTAATTTTATGTTCGAAGGTCG 58.094 34.615 0.00 0.00 42.10 4.79
2328 3206 9.099454 AGAGATGTAATTTTATGTTCGAAGGTC 57.901 33.333 0.00 0.00 0.00 3.85
2329 3207 9.099454 GAGAGATGTAATTTTATGTTCGAAGGT 57.901 33.333 0.00 0.00 0.00 3.50
2330 3208 9.098355 TGAGAGATGTAATTTTATGTTCGAAGG 57.902 33.333 0.00 0.00 0.00 3.46
2362 3240 5.362556 ACAGATTCAAAGGTCGTGATTTG 57.637 39.130 0.00 0.00 37.67 2.32
2363 3241 6.231211 ACTACAGATTCAAAGGTCGTGATTT 58.769 36.000 0.00 0.00 0.00 2.17
2369 3247 7.653767 AAACTAACTACAGATTCAAAGGTCG 57.346 36.000 0.00 0.00 0.00 4.79
2407 3285 5.331902 CAACTAAGCCCAACAATATCAACG 58.668 41.667 0.00 0.00 0.00 4.10
2412 3290 4.599041 TCAGCAACTAAGCCCAACAATAT 58.401 39.130 0.00 0.00 34.23 1.28
2438 3317 6.603940 TGCTTAAGCCCAACAATATCTTTT 57.396 33.333 24.30 0.00 41.18 2.27
2459 3338 1.541379 AATGGGACGTTTACCCTTGC 58.459 50.000 11.77 0.00 46.82 4.01
2495 3374 7.016072 TCCCTGATTAGCAATTTCAAAAAGGAA 59.984 33.333 0.00 0.00 0.00 3.36
2497 3376 6.700352 TCCCTGATTAGCAATTTCAAAAAGG 58.300 36.000 0.00 0.00 0.00 3.11
2498 3377 8.498358 GTTTCCCTGATTAGCAATTTCAAAAAG 58.502 33.333 0.00 0.00 0.00 2.27
2626 3509 2.885135 ACCATCTGCACAAATCCAGA 57.115 45.000 0.00 0.00 41.81 3.86
2734 3803 7.058023 AGTTATCCAGGTACGCACAATATAA 57.942 36.000 0.00 0.00 0.00 0.98
2769 3872 1.202132 CGTACGCACAATTTGGGATGG 60.202 52.381 0.52 0.00 40.70 3.51
2774 3877 2.892373 ATCACGTACGCACAATTTGG 57.108 45.000 16.72 0.00 0.00 3.28
2775 3878 4.953269 AGTTATCACGTACGCACAATTTG 58.047 39.130 16.72 4.18 0.00 2.32
2776 3879 5.600908 AAGTTATCACGTACGCACAATTT 57.399 34.783 16.72 4.96 0.00 1.82
2777 3880 6.897259 ATAAGTTATCACGTACGCACAATT 57.103 33.333 16.72 4.70 0.00 2.32
2778 3881 8.583810 AATATAAGTTATCACGTACGCACAAT 57.416 30.769 16.72 6.36 0.00 2.71
2779 3882 7.990541 AATATAAGTTATCACGTACGCACAA 57.009 32.000 16.72 1.47 0.00 3.33
2780 3883 7.591057 GGTAATATAAGTTATCACGTACGCACA 59.409 37.037 16.72 0.00 0.00 4.57
2781 3884 7.805071 AGGTAATATAAGTTATCACGTACGCAC 59.195 37.037 16.72 4.66 0.00 5.34
2782 3885 7.874940 AGGTAATATAAGTTATCACGTACGCA 58.125 34.615 16.72 1.94 0.00 5.24
2783 3886 7.483059 GGAGGTAATATAAGTTATCACGTACGC 59.517 40.741 16.72 0.00 0.00 4.42
2784 3887 8.506437 TGGAGGTAATATAAGTTATCACGTACG 58.494 37.037 15.01 15.01 0.00 3.67
2787 3890 8.529476 GGATGGAGGTAATATAAGTTATCACGT 58.471 37.037 0.00 0.00 0.00 4.49
2788 3891 7.980099 GGGATGGAGGTAATATAAGTTATCACG 59.020 40.741 0.00 0.00 0.00 4.35
2789 3892 8.822805 TGGGATGGAGGTAATATAAGTTATCAC 58.177 37.037 0.00 0.00 0.00 3.06
2790 3893 8.982471 TGGGATGGAGGTAATATAAGTTATCA 57.018 34.615 0.00 0.00 0.00 2.15
2799 3902 8.511126 ACAAGTAATTTGGGATGGAGGTAATAT 58.489 33.333 0.00 0.00 41.25 1.28
2800 3903 7.878495 ACAAGTAATTTGGGATGGAGGTAATA 58.122 34.615 0.00 0.00 41.25 0.98
2801 3904 6.741724 ACAAGTAATTTGGGATGGAGGTAAT 58.258 36.000 0.00 0.00 41.25 1.89
2802 3905 6.011981 AGACAAGTAATTTGGGATGGAGGTAA 60.012 38.462 0.00 0.00 41.25 2.85
2803 3906 5.491078 AGACAAGTAATTTGGGATGGAGGTA 59.509 40.000 0.00 0.00 41.25 3.08
2804 3907 4.292306 AGACAAGTAATTTGGGATGGAGGT 59.708 41.667 0.00 0.00 41.25 3.85
2805 3908 4.860022 AGACAAGTAATTTGGGATGGAGG 58.140 43.478 0.00 0.00 41.25 4.30
2806 3909 7.338710 TCTAAGACAAGTAATTTGGGATGGAG 58.661 38.462 0.00 0.00 41.25 3.86
2807 3910 7.265599 TCTAAGACAAGTAATTTGGGATGGA 57.734 36.000 0.00 0.00 41.25 3.41
2808 3911 8.525290 AATCTAAGACAAGTAATTTGGGATGG 57.475 34.615 0.00 0.00 41.25 3.51
2809 3912 9.793252 CAAATCTAAGACAAGTAATTTGGGATG 57.207 33.333 0.00 0.00 41.25 3.51
2810 3913 9.533831 ACAAATCTAAGACAAGTAATTTGGGAT 57.466 29.630 9.60 0.00 41.25 3.85
2811 3914 8.934023 ACAAATCTAAGACAAGTAATTTGGGA 57.066 30.769 9.60 0.00 41.25 4.37
2844 3951 7.149015 GGCACGTATTAGTGTTAGATACATTCG 60.149 40.741 0.00 0.00 43.61 3.34
2846 3953 7.723324 AGGCACGTATTAGTGTTAGATACATT 58.277 34.615 0.00 0.00 43.61 2.71
2863 3970 7.476540 AAATATGGATGTATCTAGGCACGTA 57.523 36.000 0.00 0.00 0.00 3.57
2881 3988 8.227791 CCGTCCCGAATTATTTGTCTAAATATG 58.772 37.037 0.00 0.00 38.26 1.78
2882 3989 8.152246 TCCGTCCCGAATTATTTGTCTAAATAT 58.848 33.333 0.00 0.00 38.26 1.28
2886 3993 5.341872 TCCGTCCCGAATTATTTGTCTAA 57.658 39.130 0.00 0.00 0.00 2.10
2920 4027 9.503399 AAAAAGACGAACCTAGAATTTGACTAT 57.497 29.630 0.00 0.00 0.00 2.12
3054 4181 0.033920 CTTTGCCTTCTTTGCACCCC 59.966 55.000 0.00 0.00 38.72 4.95
3163 4295 8.447833 TCGTGCATATTCGAGAAAAATAAAGTT 58.552 29.630 0.00 0.00 0.00 2.66
3205 4337 8.315391 GCATTCTTTTGCCTTTCTTCTTTAAT 57.685 30.769 0.00 0.00 36.60 1.40
3219 4351 0.968405 TGGTGGAGGCATTCTTTTGC 59.032 50.000 0.00 0.00 42.01 3.68
3220 4352 2.892852 TCTTGGTGGAGGCATTCTTTTG 59.107 45.455 0.00 0.00 0.00 2.44
3221 4353 3.243359 TCTTGGTGGAGGCATTCTTTT 57.757 42.857 0.00 0.00 0.00 2.27
3222 4354 2.978156 TCTTGGTGGAGGCATTCTTT 57.022 45.000 0.00 0.00 0.00 2.52
3223 4355 2.309755 TGATCTTGGTGGAGGCATTCTT 59.690 45.455 0.00 0.00 0.00 2.52
3224 4356 1.918262 TGATCTTGGTGGAGGCATTCT 59.082 47.619 0.00 0.00 0.00 2.40
3225 4357 2.425143 TGATCTTGGTGGAGGCATTC 57.575 50.000 0.00 0.00 0.00 2.67
3226 4358 3.202818 TGTATGATCTTGGTGGAGGCATT 59.797 43.478 0.00 0.00 0.00 3.56
3227 4359 2.779430 TGTATGATCTTGGTGGAGGCAT 59.221 45.455 0.00 0.00 0.00 4.40
3228 4360 2.195727 TGTATGATCTTGGTGGAGGCA 58.804 47.619 0.00 0.00 0.00 4.75
3229 4361 3.209410 CTTGTATGATCTTGGTGGAGGC 58.791 50.000 0.00 0.00 0.00 4.70
3230 4362 4.494091 ACTTGTATGATCTTGGTGGAGG 57.506 45.455 0.00 0.00 0.00 4.30
3231 4363 6.644347 AGTAACTTGTATGATCTTGGTGGAG 58.356 40.000 0.00 0.00 0.00 3.86
3232 4364 6.620877 AGTAACTTGTATGATCTTGGTGGA 57.379 37.500 0.00 0.00 0.00 4.02
3233 4365 7.822334 TGTAAGTAACTTGTATGATCTTGGTGG 59.178 37.037 0.00 0.00 0.00 4.61
3234 4366 8.771920 TGTAAGTAACTTGTATGATCTTGGTG 57.228 34.615 0.00 0.00 0.00 4.17
3235 4367 9.959721 AATGTAAGTAACTTGTATGATCTTGGT 57.040 29.630 0.00 0.00 0.00 3.67
3242 4374 9.577110 CGGAGTAAATGTAAGTAACTTGTATGA 57.423 33.333 0.00 0.00 0.00 2.15
3243 4375 8.325997 GCGGAGTAAATGTAAGTAACTTGTATG 58.674 37.037 0.00 0.00 0.00 2.39
3244 4376 7.493645 GGCGGAGTAAATGTAAGTAACTTGTAT 59.506 37.037 0.00 0.00 0.00 2.29
3245 4377 6.813152 GGCGGAGTAAATGTAAGTAACTTGTA 59.187 38.462 0.00 0.00 0.00 2.41
3246 4378 5.640783 GGCGGAGTAAATGTAAGTAACTTGT 59.359 40.000 0.00 0.00 0.00 3.16
3247 4379 5.640357 TGGCGGAGTAAATGTAAGTAACTTG 59.360 40.000 0.00 0.00 0.00 3.16
3248 4380 5.797051 TGGCGGAGTAAATGTAAGTAACTT 58.203 37.500 0.00 0.00 0.00 2.66
3249 4381 5.410355 TGGCGGAGTAAATGTAAGTAACT 57.590 39.130 0.00 0.00 0.00 2.24
3250 4382 5.813672 TCATGGCGGAGTAAATGTAAGTAAC 59.186 40.000 0.00 0.00 0.00 2.50
3251 4383 5.979993 TCATGGCGGAGTAAATGTAAGTAA 58.020 37.500 0.00 0.00 0.00 2.24
3252 4384 5.601583 TCATGGCGGAGTAAATGTAAGTA 57.398 39.130 0.00 0.00 0.00 2.24
3253 4385 4.481368 TCATGGCGGAGTAAATGTAAGT 57.519 40.909 0.00 0.00 0.00 2.24
3254 4386 5.220854 CCTTTCATGGCGGAGTAAATGTAAG 60.221 44.000 0.00 0.00 31.18 2.34
3255 4387 4.638421 CCTTTCATGGCGGAGTAAATGTAA 59.362 41.667 0.00 0.00 0.00 2.41
3256 4388 4.196193 CCTTTCATGGCGGAGTAAATGTA 58.804 43.478 0.00 0.00 0.00 2.29
3257 4389 3.016736 CCTTTCATGGCGGAGTAAATGT 58.983 45.455 0.00 0.00 0.00 2.71
3258 4390 3.016736 ACCTTTCATGGCGGAGTAAATG 58.983 45.455 0.00 0.00 0.00 2.32
3259 4391 3.016736 CACCTTTCATGGCGGAGTAAAT 58.983 45.455 0.00 0.00 0.00 1.40
3260 4392 2.432444 CACCTTTCATGGCGGAGTAAA 58.568 47.619 0.00 0.00 0.00 2.01
3261 4393 1.948611 GCACCTTTCATGGCGGAGTAA 60.949 52.381 0.00 0.00 0.00 2.24
3262 4394 0.392461 GCACCTTTCATGGCGGAGTA 60.392 55.000 0.00 0.00 0.00 2.59
3263 4395 1.675641 GCACCTTTCATGGCGGAGT 60.676 57.895 0.00 0.00 0.00 3.85
3264 4396 2.753966 CGCACCTTTCATGGCGGAG 61.754 63.158 4.15 0.00 45.27 4.63
3265 4397 2.745884 CGCACCTTTCATGGCGGA 60.746 61.111 4.15 0.00 45.27 5.54
3268 4400 0.598065 AAAGTCGCACCTTTCATGGC 59.402 50.000 0.00 0.00 28.57 4.40
3269 4401 4.701956 ATTAAAGTCGCACCTTTCATGG 57.298 40.909 1.19 0.00 36.18 3.66
3270 4402 7.271223 CACTAAATTAAAGTCGCACCTTTCATG 59.729 37.037 1.19 0.00 36.18 3.07
3271 4403 7.174253 TCACTAAATTAAAGTCGCACCTTTCAT 59.826 33.333 1.19 0.00 36.18 2.57
3272 4404 6.483974 TCACTAAATTAAAGTCGCACCTTTCA 59.516 34.615 1.19 0.00 36.18 2.69
3273 4405 6.894828 TCACTAAATTAAAGTCGCACCTTTC 58.105 36.000 1.19 0.00 36.18 2.62
3274 4406 6.870971 TCACTAAATTAAAGTCGCACCTTT 57.129 33.333 3.42 3.42 38.23 3.11
3275 4407 6.870971 TTCACTAAATTAAAGTCGCACCTT 57.129 33.333 0.00 0.00 0.00 3.50
3276 4408 6.870971 TTTCACTAAATTAAAGTCGCACCT 57.129 33.333 0.00 0.00 0.00 4.00
3277 4409 7.112984 CACTTTTCACTAAATTAAAGTCGCACC 59.887 37.037 0.00 0.00 38.41 5.01
3278 4410 7.357287 GCACTTTTCACTAAATTAAAGTCGCAC 60.357 37.037 0.00 0.00 38.41 5.34
3279 4411 6.635239 GCACTTTTCACTAAATTAAAGTCGCA 59.365 34.615 0.00 0.00 38.41 5.10
3280 4412 6.635239 TGCACTTTTCACTAAATTAAAGTCGC 59.365 34.615 0.00 0.00 38.41 5.19
3281 4413 7.112984 GGTGCACTTTTCACTAAATTAAAGTCG 59.887 37.037 17.98 0.00 38.41 4.18
3351 4484 9.008965 TGCACTTCTCTAAAATATTGCAACTAA 57.991 29.630 0.00 0.00 35.87 2.24
3434 4569 7.059602 CGCTATTGTCTTACAGTACGACATATG 59.940 40.741 18.03 12.43 37.50 1.78
3438 4573 4.392754 TCGCTATTGTCTTACAGTACGACA 59.607 41.667 14.39 14.39 36.02 4.35
3447 4582 6.656003 AGTTTGTTGTTCGCTATTGTCTTAC 58.344 36.000 0.00 0.00 0.00 2.34
3532 4670 7.692460 TCTCGAGGTGTTAAAATACTGTCTA 57.308 36.000 13.56 0.00 0.00 2.59
3534 4672 6.812160 ACATCTCGAGGTGTTAAAATACTGTC 59.188 38.462 25.59 0.00 0.00 3.51
3584 4976 6.530534 ACGTCATATTGTAAGTTGCACTAGTC 59.469 38.462 0.00 0.00 0.00 2.59
3621 5013 4.807304 ACACGTCGTATTGTGAGTCTTTTT 59.193 37.500 0.00 0.00 39.38 1.94
3622 5014 4.365723 ACACGTCGTATTGTGAGTCTTTT 58.634 39.130 0.00 0.00 39.38 2.27
3623 5015 3.973657 ACACGTCGTATTGTGAGTCTTT 58.026 40.909 0.00 0.00 39.38 2.52
3624 5016 3.637998 ACACGTCGTATTGTGAGTCTT 57.362 42.857 0.00 0.00 39.38 3.01
3625 5017 3.637998 AACACGTCGTATTGTGAGTCT 57.362 42.857 0.00 0.00 39.38 3.24
3626 5018 6.385537 AATAAACACGTCGTATTGTGAGTC 57.614 37.500 0.00 0.00 39.38 3.36
3627 5019 7.044510 CGATAATAAACACGTCGTATTGTGAGT 60.045 37.037 0.00 0.00 39.38 3.41
3628 5020 7.044510 ACGATAATAAACACGTCGTATTGTGAG 60.045 37.037 0.00 0.00 42.91 3.51
3629 5021 6.746822 ACGATAATAAACACGTCGTATTGTGA 59.253 34.615 0.00 0.00 42.91 3.58
3630 5022 6.914935 ACGATAATAAACACGTCGTATTGTG 58.085 36.000 0.00 0.00 42.91 3.33
3631 5023 7.910162 AGTACGATAATAAACACGTCGTATTGT 59.090 33.333 0.00 0.00 45.67 2.71
3632 5024 8.261628 AGTACGATAATAAACACGTCGTATTG 57.738 34.615 0.00 0.00 45.67 1.90
3633 5025 8.841444 AAGTACGATAATAAACACGTCGTATT 57.159 30.769 0.00 0.00 45.67 1.89
3634 5026 8.841444 AAAGTACGATAATAAACACGTCGTAT 57.159 30.769 0.00 0.00 45.67 3.06
3635 5027 8.667987 AAAAGTACGATAATAAACACGTCGTA 57.332 30.769 0.00 2.25 42.91 3.43
3754 5147 0.461870 CGAACATGCCGATGGAGGAA 60.462 55.000 2.31 0.00 33.39 3.36
3787 5180 1.605058 GGAGCTGGAACGAGCCACTA 61.605 60.000 0.00 0.00 40.08 2.74
4227 5659 0.607217 CTGATGGACAGCAGCAACCA 60.607 55.000 4.51 7.50 38.05 3.67
4276 5708 2.047844 GCGACTGAAGCCAGCTCA 60.048 61.111 0.00 0.00 44.16 4.26
4343 5777 0.036164 TCCAAATCCACGTCACCCAG 59.964 55.000 0.00 0.00 0.00 4.45
4389 5824 3.117888 ACCATGGATCGCTGTTTAGGATT 60.118 43.478 21.47 0.00 0.00 3.01
4391 5826 1.837439 ACCATGGATCGCTGTTTAGGA 59.163 47.619 21.47 0.00 0.00 2.94
4439 5874 9.632638 AAACATATACATACTCAAGCAAATCCT 57.367 29.630 0.00 0.00 0.00 3.24
4454 5889 9.466497 AAAATGACAGAGGACAAACATATACAT 57.534 29.630 0.00 0.00 0.00 2.29
4455 5890 8.729756 CAAAATGACAGAGGACAAACATATACA 58.270 33.333 0.00 0.00 0.00 2.29
4456 5891 8.730680 ACAAAATGACAGAGGACAAACATATAC 58.269 33.333 0.00 0.00 0.00 1.47
4520 5955 3.118445 TGGTGTCTGACAGTTGTGATTCA 60.118 43.478 11.41 0.00 0.00 2.57
4531 5966 5.290493 AGTAGAAACATTGGTGTCTGACA 57.710 39.130 6.36 6.36 41.77 3.58
4533 5968 6.353323 TGAAAGTAGAAACATTGGTGTCTGA 58.647 36.000 0.00 0.00 41.77 3.27
4574 6009 9.301153 CCTTATAGGTGTGATTTAAATTGCAAC 57.699 33.333 0.00 7.39 0.00 4.17
4658 6095 3.092511 GGGGATGGAGAGCTGCCA 61.093 66.667 7.32 7.32 40.24 4.92
4685 6124 3.801997 CTGGCGGCCTCCTCCAAT 61.802 66.667 21.46 0.00 0.00 3.16
4762 6201 2.040544 GTCAAGATGCCCCACACCG 61.041 63.158 0.00 0.00 0.00 4.94
4798 6237 1.823648 GCCATGGAGACCTAGATCCGA 60.824 57.143 18.40 0.00 38.52 4.55
4806 6245 1.524002 CGACATGCCATGGAGACCT 59.476 57.895 18.40 0.00 33.60 3.85
4815 6254 3.329889 AGGAAGCCCGACATGCCA 61.330 61.111 0.00 0.00 37.58 4.92
4820 6259 4.020617 CTGCCAGGAAGCCCGACA 62.021 66.667 0.00 0.00 37.58 4.35
4855 6294 4.329545 ACACCGCCACCGCTGATT 62.330 61.111 0.00 0.00 0.00 2.57
4885 6332 2.125229 CATGCCGCTGAGCTGTCT 60.125 61.111 1.78 0.00 0.00 3.41
4991 6440 2.838386 TCGACGAATCTCCGTTTAGG 57.162 50.000 0.00 0.00 43.49 2.69
4995 6444 2.014857 TCTGATCGACGAATCTCCGTT 58.985 47.619 0.00 0.00 43.49 4.44
5011 6460 1.358152 AGGTTTTCACCCGGATCTGA 58.642 50.000 0.73 0.00 45.63 3.27
5032 6481 1.608283 GCTTTGGTAACTGCCGAGAGT 60.608 52.381 0.00 0.00 37.61 3.24
5126 6577 3.887124 TGGTTTTCCCCCGGAGGTAGT 62.887 57.143 0.73 0.00 42.28 2.73
5138 6589 3.375299 CCAATCGACTGATCTGGTTTTCC 59.625 47.826 0.00 0.00 35.41 3.13
5139 6590 4.253685 TCCAATCGACTGATCTGGTTTTC 58.746 43.478 0.00 0.00 35.76 2.29
5143 6594 3.033909 TCATCCAATCGACTGATCTGGT 58.966 45.455 0.00 0.00 35.76 4.00
5157 6608 3.982372 GAGCGCCGTCGTCATCCAA 62.982 63.158 2.29 0.00 38.14 3.53
5158 6609 4.492160 GAGCGCCGTCGTCATCCA 62.492 66.667 2.29 0.00 38.14 3.41
5177 6628 2.033602 CCAAGGGGGAACGACACC 59.966 66.667 0.00 0.00 42.36 4.16
5220 6671 0.326264 GCACACTGGTCCCTTGAGAT 59.674 55.000 0.00 0.00 0.00 2.75
5221 6672 1.754745 GCACACTGGTCCCTTGAGA 59.245 57.895 0.00 0.00 0.00 3.27
5237 6688 1.444119 GCTCAACCACTGAAACCGCA 61.444 55.000 0.00 0.00 32.17 5.69
5238 6689 1.282875 GCTCAACCACTGAAACCGC 59.717 57.895 0.00 0.00 32.17 5.68
5246 6697 2.203153 AAACGCCGCTCAACCACT 60.203 55.556 0.00 0.00 0.00 4.00
5249 6700 1.154225 CATGAAACGCCGCTCAACC 60.154 57.895 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.