Multiple sequence alignment - TraesCS5D01G321200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G321200 chr5D 100.000 4539 0 0 1 4539 413076478 413071940 0.000000e+00 8383.0
1 TraesCS5D01G321200 chr5D 93.978 465 24 4 1 463 553792680 553793142 0.000000e+00 701.0
2 TraesCS5D01G321200 chr5B 91.755 3129 161 49 729 3823 497938844 497935779 0.000000e+00 4259.0
3 TraesCS5D01G321200 chr5B 90.717 474 27 9 3818 4274 497935744 497935271 2.320000e-172 616.0
4 TraesCS5D01G321200 chr5B 89.506 162 14 3 4361 4519 497908895 497908734 7.700000e-48 202.0
5 TraesCS5D01G321200 chr5B 92.857 70 2 2 4281 4347 497909471 497909402 1.040000e-16 99.0
6 TraesCS5D01G321200 chr5A 94.661 1386 61 7 2193 3574 525124359 525122983 0.000000e+00 2137.0
7 TraesCS5D01G321200 chr5A 90.747 1178 58 26 932 2084 525125570 525124419 0.000000e+00 1524.0
8 TraesCS5D01G321200 chr5A 91.760 267 8 9 3818 4076 525122686 525122426 4.320000e-95 359.0
9 TraesCS5D01G321200 chr5A 94.366 213 8 2 4074 4282 525120943 525120731 1.570000e-84 324.0
10 TraesCS5D01G321200 chr5A 87.097 155 16 3 4361 4512 525120594 525120441 6.040000e-39 172.0
11 TraesCS5D01G321200 chr5A 90.769 130 3 1 805 934 525125964 525125844 1.010000e-36 165.0
12 TraesCS5D01G321200 chr5A 91.150 113 4 2 516 628 525126234 525126128 1.020000e-31 148.0
13 TraesCS5D01G321200 chr1D 95.870 460 14 4 1 458 447463559 447464015 0.000000e+00 739.0
14 TraesCS5D01G321200 chr7D 95.197 458 20 2 1 456 14575131 14575588 0.000000e+00 723.0
15 TraesCS5D01G321200 chr7D 94.589 462 19 4 1 457 576855380 576854920 0.000000e+00 710.0
16 TraesCS5D01G321200 chr7D 94.336 459 22 4 1 457 418544516 418544972 0.000000e+00 701.0
17 TraesCS5D01G321200 chr2D 94.771 459 19 5 1 457 27775148 27774693 0.000000e+00 710.0
18 TraesCS5D01G321200 chr2D 93.966 464 24 4 1 461 579752538 579753000 0.000000e+00 699.0
19 TraesCS5D01G321200 chr7A 94.737 456 20 3 1 454 736595751 736596204 0.000000e+00 706.0
20 TraesCS5D01G321200 chr6D 94.541 458 22 3 1 456 22962947 22963403 0.000000e+00 704.0
21 TraesCS5D01G321200 chr7B 83.333 84 14 0 4383 4466 639792250 639792167 1.350000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G321200 chr5D 413071940 413076478 4538 True 8383.000000 8383 100.000000 1 4539 1 chr5D.!!$R1 4538
1 TraesCS5D01G321200 chr5B 497935271 497938844 3573 True 2437.500000 4259 91.236000 729 4274 2 chr5B.!!$R2 3545
2 TraesCS5D01G321200 chr5A 525120441 525126234 5793 True 689.857143 2137 91.507143 516 4512 7 chr5A.!!$R1 3996


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 447 0.036388 TTTTGCGGGGTCTGCTAGAG 60.036 55.0 0.00 0.0 0.0 2.43 F
479 480 0.104120 GGTGCAAGCCGGAAGTTTTT 59.896 50.0 5.05 0.0 0.0 1.94 F
700 701 0.456628 CGGCATGGCATGTGATTTGA 59.543 50.0 26.94 0.0 0.0 2.69 F
1812 2167 0.538118 GGATGCCACATGCCATGTTT 59.462 50.0 7.80 0.0 42.7 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1803 0.249447 CGCGCATCTCCTACCAATCA 60.249 55.0 8.75 0.0 0.00 2.57 R
1463 1804 0.249489 ACGCGCATCTCCTACCAATC 60.249 55.0 5.73 0.0 0.00 2.67 R
2172 2531 0.457509 AGTGAGACGATGCAGAAGCG 60.458 55.0 0.00 0.0 46.23 4.68 R
3717 4147 0.254178 CCATCTTGGGTGACTCAGGG 59.746 60.0 0.00 0.0 32.67 4.45 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.508128 GCAACGAGATCCGCCCGA 62.508 66.667 0.00 0.00 43.32 5.14
80 81 2.278857 CAACGAGATCCGCCCGAG 60.279 66.667 0.00 0.00 43.32 4.63
81 82 3.528370 AACGAGATCCGCCCGAGG 61.528 66.667 0.00 0.00 43.32 4.63
93 94 4.195334 CCGAGGGGAAGGGGCATG 62.195 72.222 0.00 0.00 34.06 4.06
94 95 4.883354 CGAGGGGAAGGGGCATGC 62.883 72.222 9.90 9.90 0.00 4.06
95 96 4.883354 GAGGGGAAGGGGCATGCG 62.883 72.222 12.44 0.00 0.00 4.73
123 124 3.717294 GGTGACGGGGGACAGCAT 61.717 66.667 0.00 0.00 35.10 3.79
124 125 2.436646 GTGACGGGGGACAGCATG 60.437 66.667 0.00 0.00 46.00 4.06
125 126 3.716195 TGACGGGGGACAGCATGG 61.716 66.667 0.00 0.00 43.62 3.66
126 127 4.489771 GACGGGGGACAGCATGGG 62.490 72.222 0.00 0.00 43.62 4.00
129 130 4.129148 GGGGGACAGCATGGGGTC 62.129 72.222 0.00 0.00 43.62 4.46
130 131 4.489771 GGGGACAGCATGGGGTCG 62.490 72.222 0.00 0.00 43.62 4.79
131 132 3.717294 GGGACAGCATGGGGTCGT 61.717 66.667 0.00 0.00 43.62 4.34
132 133 2.125106 GGACAGCATGGGGTCGTC 60.125 66.667 0.00 0.00 43.62 4.20
133 134 2.125106 GACAGCATGGGGTCGTCC 60.125 66.667 0.00 0.00 43.62 4.79
134 135 2.927856 ACAGCATGGGGTCGTCCA 60.928 61.111 0.04 0.00 43.62 4.02
139 140 4.175337 ATGGGGTCGTCCATGGCG 62.175 66.667 18.73 18.73 45.13 5.69
183 184 4.162690 CGGAGCTTTCGGAGGGGG 62.163 72.222 0.00 0.00 0.00 5.40
202 203 4.740822 GCAATGGTGGCGGAGGGT 62.741 66.667 0.00 0.00 0.00 4.34
203 204 2.751436 CAATGGTGGCGGAGGGTG 60.751 66.667 0.00 0.00 0.00 4.61
204 205 4.740822 AATGGTGGCGGAGGGTGC 62.741 66.667 0.00 0.00 0.00 5.01
231 232 3.810896 GAAAGGGCGCGCGGAAAT 61.811 61.111 33.06 10.05 0.00 2.17
232 233 4.114997 AAAGGGCGCGCGGAAATG 62.115 61.111 33.06 1.90 0.00 2.32
238 239 3.564027 CGCGCGGAAATGTCCCTC 61.564 66.667 24.84 0.00 41.44 4.30
239 240 3.202706 GCGCGGAAATGTCCCTCC 61.203 66.667 8.83 0.00 41.44 4.30
240 241 2.513897 CGCGGAAATGTCCCTCCC 60.514 66.667 0.00 0.00 41.44 4.30
241 242 2.513897 GCGGAAATGTCCCTCCCG 60.514 66.667 0.00 0.00 41.44 5.14
242 243 2.513897 CGGAAATGTCCCTCCCGC 60.514 66.667 0.00 0.00 41.44 6.13
243 244 2.124278 GGAAATGTCCCTCCCGCC 60.124 66.667 0.00 0.00 38.08 6.13
244 245 2.674754 GAAATGTCCCTCCCGCCA 59.325 61.111 0.00 0.00 0.00 5.69
245 246 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
246 247 0.610785 GAAATGTCCCTCCCGCCAAA 60.611 55.000 0.00 0.00 0.00 3.28
247 248 0.041090 AAATGTCCCTCCCGCCAAAT 59.959 50.000 0.00 0.00 0.00 2.32
248 249 0.395724 AATGTCCCTCCCGCCAAATC 60.396 55.000 0.00 0.00 0.00 2.17
249 250 1.281925 ATGTCCCTCCCGCCAAATCT 61.282 55.000 0.00 0.00 0.00 2.40
250 251 1.153147 GTCCCTCCCGCCAAATCTC 60.153 63.158 0.00 0.00 0.00 2.75
251 252 2.203070 CCCTCCCGCCAAATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
252 253 2.897350 CCTCCCGCCAAATCTCGC 60.897 66.667 0.00 0.00 0.00 5.03
259 260 2.588877 CCAAATCTCGCGCCGGAT 60.589 61.111 5.05 2.46 0.00 4.18
260 261 2.628106 CAAATCTCGCGCCGGATG 59.372 61.111 5.05 0.00 0.00 3.51
261 262 2.588877 AAATCTCGCGCCGGATGG 60.589 61.111 5.05 0.00 38.77 3.51
262 263 4.609018 AATCTCGCGCCGGATGGG 62.609 66.667 5.05 5.03 39.58 4.00
269 270 4.856801 CGCCGGATGGGGGTTGAG 62.857 72.222 5.05 0.00 44.23 3.02
271 272 3.411517 CCGGATGGGGGTTGAGCT 61.412 66.667 0.00 0.00 0.00 4.09
272 273 2.190578 CGGATGGGGGTTGAGCTC 59.809 66.667 6.82 6.82 0.00 4.09
273 274 2.190578 GGATGGGGGTTGAGCTCG 59.809 66.667 9.64 0.00 0.00 5.03
274 275 2.190578 GATGGGGGTTGAGCTCGG 59.809 66.667 9.64 0.00 0.00 4.63
275 276 3.406595 GATGGGGGTTGAGCTCGGG 62.407 68.421 9.64 0.00 0.00 5.14
276 277 4.974438 TGGGGGTTGAGCTCGGGT 62.974 66.667 9.64 0.00 0.00 5.28
277 278 4.097361 GGGGGTTGAGCTCGGGTC 62.097 72.222 9.64 0.00 0.00 4.46
278 279 4.452733 GGGGTTGAGCTCGGGTCG 62.453 72.222 9.64 0.00 32.15 4.79
279 280 4.452733 GGGTTGAGCTCGGGTCGG 62.453 72.222 9.64 0.00 32.15 4.79
296 297 4.864334 GCCTCCCAGCCCGTGATG 62.864 72.222 0.00 0.00 0.00 3.07
297 298 3.083349 CCTCCCAGCCCGTGATGA 61.083 66.667 0.00 0.00 0.00 2.92
298 299 2.446848 CCTCCCAGCCCGTGATGAT 61.447 63.158 0.00 0.00 0.00 2.45
299 300 1.121407 CCTCCCAGCCCGTGATGATA 61.121 60.000 0.00 0.00 0.00 2.15
300 301 0.319728 CTCCCAGCCCGTGATGATAG 59.680 60.000 0.00 0.00 0.00 2.08
301 302 0.105709 TCCCAGCCCGTGATGATAGA 60.106 55.000 0.00 0.00 0.00 1.98
302 303 0.319728 CCCAGCCCGTGATGATAGAG 59.680 60.000 0.00 0.00 0.00 2.43
303 304 0.319728 CCAGCCCGTGATGATAGAGG 59.680 60.000 0.00 0.00 0.00 3.69
304 305 1.043816 CAGCCCGTGATGATAGAGGT 58.956 55.000 0.00 0.00 0.00 3.85
305 306 1.414181 CAGCCCGTGATGATAGAGGTT 59.586 52.381 0.00 0.00 0.00 3.50
306 307 1.414181 AGCCCGTGATGATAGAGGTTG 59.586 52.381 0.00 0.00 0.00 3.77
307 308 1.541233 GCCCGTGATGATAGAGGTTGG 60.541 57.143 0.00 0.00 0.00 3.77
308 309 1.070758 CCCGTGATGATAGAGGTTGGG 59.929 57.143 0.00 0.00 0.00 4.12
309 310 1.070758 CCGTGATGATAGAGGTTGGGG 59.929 57.143 0.00 0.00 0.00 4.96
310 311 2.039418 CGTGATGATAGAGGTTGGGGA 58.961 52.381 0.00 0.00 0.00 4.81
311 312 2.036475 CGTGATGATAGAGGTTGGGGAG 59.964 54.545 0.00 0.00 0.00 4.30
312 313 3.309296 GTGATGATAGAGGTTGGGGAGA 58.691 50.000 0.00 0.00 0.00 3.71
313 314 3.711704 GTGATGATAGAGGTTGGGGAGAA 59.288 47.826 0.00 0.00 0.00 2.87
314 315 3.969976 TGATGATAGAGGTTGGGGAGAAG 59.030 47.826 0.00 0.00 0.00 2.85
315 316 3.776731 TGATAGAGGTTGGGGAGAAGA 57.223 47.619 0.00 0.00 0.00 2.87
316 317 4.286813 TGATAGAGGTTGGGGAGAAGAT 57.713 45.455 0.00 0.00 0.00 2.40
317 318 4.635473 TGATAGAGGTTGGGGAGAAGATT 58.365 43.478 0.00 0.00 0.00 2.40
318 319 5.039645 TGATAGAGGTTGGGGAGAAGATTT 58.960 41.667 0.00 0.00 0.00 2.17
319 320 3.728385 AGAGGTTGGGGAGAAGATTTG 57.272 47.619 0.00 0.00 0.00 2.32
320 321 2.095461 GAGGTTGGGGAGAAGATTTGC 58.905 52.381 0.00 0.00 0.00 3.68
321 322 1.186200 GGTTGGGGAGAAGATTTGCC 58.814 55.000 0.00 0.00 0.00 4.52
322 323 0.811281 GTTGGGGAGAAGATTTGCCG 59.189 55.000 0.00 0.00 0.00 5.69
323 324 0.965363 TTGGGGAGAAGATTTGCCGC 60.965 55.000 0.00 0.00 0.00 6.53
324 325 2.472909 GGGGAGAAGATTTGCCGCG 61.473 63.158 0.00 0.00 0.00 6.46
325 326 2.405191 GGAGAAGATTTGCCGCGC 59.595 61.111 0.00 0.00 0.00 6.86
326 327 2.405191 GAGAAGATTTGCCGCGCC 59.595 61.111 0.00 0.00 0.00 6.53
327 328 3.113386 GAGAAGATTTGCCGCGCCC 62.113 63.158 0.00 0.00 0.00 6.13
328 329 4.193334 GAAGATTTGCCGCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
352 353 0.883153 AAAAATTGCGGTCCGGTACC 59.117 50.000 14.38 0.16 45.77 3.34
364 365 4.231439 GGTACCGGATGCGGGGTC 62.231 72.222 30.00 17.82 37.75 4.46
365 366 3.152400 GTACCGGATGCGGGGTCT 61.152 66.667 30.00 11.27 37.75 3.85
366 367 3.151710 TACCGGATGCGGGGTCTG 61.152 66.667 30.00 3.50 37.75 3.51
369 370 4.530857 CGGATGCGGGGTCTGGTC 62.531 72.222 0.00 0.00 0.00 4.02
370 371 3.399181 GGATGCGGGGTCTGGTCA 61.399 66.667 0.00 0.00 0.00 4.02
371 372 2.746375 GGATGCGGGGTCTGGTCAT 61.746 63.158 0.00 0.00 0.00 3.06
372 373 1.524621 GATGCGGGGTCTGGTCATG 60.525 63.158 0.00 0.00 0.00 3.07
373 374 3.704231 ATGCGGGGTCTGGTCATGC 62.704 63.158 0.00 0.00 0.00 4.06
374 375 4.408821 GCGGGGTCTGGTCATGCA 62.409 66.667 0.00 0.00 0.00 3.96
375 376 2.124983 CGGGGTCTGGTCATGCAG 60.125 66.667 0.00 0.00 0.00 4.41
376 377 2.659063 CGGGGTCTGGTCATGCAGA 61.659 63.158 0.00 0.00 0.00 4.26
377 378 1.918253 GGGGTCTGGTCATGCAGAT 59.082 57.895 6.35 0.00 0.00 2.90
378 379 0.257039 GGGGTCTGGTCATGCAGATT 59.743 55.000 6.35 0.00 0.00 2.40
379 380 1.341383 GGGGTCTGGTCATGCAGATTT 60.341 52.381 6.35 0.00 0.00 2.17
380 381 2.450476 GGGTCTGGTCATGCAGATTTT 58.550 47.619 6.35 0.00 0.00 1.82
381 382 2.827921 GGGTCTGGTCATGCAGATTTTT 59.172 45.455 6.35 0.00 0.00 1.94
382 383 3.119352 GGGTCTGGTCATGCAGATTTTTC 60.119 47.826 6.35 0.00 0.00 2.29
383 384 3.760684 GGTCTGGTCATGCAGATTTTTCT 59.239 43.478 6.35 0.00 0.00 2.52
384 385 4.380233 GGTCTGGTCATGCAGATTTTTCTG 60.380 45.833 6.35 0.00 40.51 3.02
385 386 3.760151 TCTGGTCATGCAGATTTTTCTGG 59.240 43.478 5.24 0.00 38.14 3.86
386 387 2.231964 TGGTCATGCAGATTTTTCTGGC 59.768 45.455 5.24 0.00 38.14 4.85
387 388 2.417787 GGTCATGCAGATTTTTCTGGCC 60.418 50.000 0.00 0.00 38.14 5.36
388 389 1.826720 TCATGCAGATTTTTCTGGCCC 59.173 47.619 0.00 0.00 38.14 5.80
389 390 1.829222 CATGCAGATTTTTCTGGCCCT 59.171 47.619 0.00 0.00 38.14 5.19
390 391 1.259609 TGCAGATTTTTCTGGCCCTG 58.740 50.000 0.00 0.00 38.14 4.45
391 392 1.203038 TGCAGATTTTTCTGGCCCTGA 60.203 47.619 0.00 0.00 38.14 3.86
392 393 1.203287 GCAGATTTTTCTGGCCCTGAC 59.797 52.381 0.00 0.00 38.14 3.51
393 394 1.821136 CAGATTTTTCTGGCCCTGACC 59.179 52.381 0.00 0.00 34.28 4.02
394 395 1.186200 GATTTTTCTGGCCCTGACCC 58.814 55.000 0.00 0.00 0.00 4.46
395 396 0.611896 ATTTTTCTGGCCCTGACCCG 60.612 55.000 0.00 0.00 0.00 5.28
396 397 3.860930 TTTTCTGGCCCTGACCCGC 62.861 63.158 0.00 0.00 0.00 6.13
399 400 4.431131 CTGGCCCTGACCCGCAAT 62.431 66.667 0.00 0.00 0.00 3.56
400 401 3.944250 CTGGCCCTGACCCGCAATT 62.944 63.158 0.00 0.00 0.00 2.32
401 402 2.679996 GGCCCTGACCCGCAATTT 60.680 61.111 0.00 0.00 0.00 1.82
402 403 2.573340 GCCCTGACCCGCAATTTG 59.427 61.111 0.00 0.00 0.00 2.32
403 404 3.005540 GCCCTGACCCGCAATTTGG 62.006 63.158 0.00 0.00 0.00 3.28
404 405 2.573340 CCTGACCCGCAATTTGGC 59.427 61.111 0.00 0.00 0.00 4.52
415 416 3.116063 GCAATTTGGCGGTTATTTTGC 57.884 42.857 0.00 0.00 0.00 3.68
416 417 2.473704 GCAATTTGGCGGTTATTTTGCG 60.474 45.455 0.00 0.00 0.00 4.85
417 418 2.003196 ATTTGGCGGTTATTTTGCGG 57.997 45.000 0.00 0.00 0.00 5.69
418 419 0.038159 TTTGGCGGTTATTTTGCGGG 60.038 50.000 0.00 0.00 0.00 6.13
419 420 2.202690 GGCGGTTATTTTGCGGGC 60.203 61.111 0.00 0.00 0.00 6.13
420 421 2.202690 GCGGTTATTTTGCGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
421 422 2.995872 GCGGTTATTTTGCGGGCCA 61.996 57.895 4.39 0.00 0.00 5.36
422 423 1.138671 CGGTTATTTTGCGGGCCAG 59.861 57.895 4.39 0.00 0.00 4.85
423 424 1.515487 GGTTATTTTGCGGGCCAGG 59.485 57.895 4.39 0.00 0.00 4.45
424 425 1.515487 GTTATTTTGCGGGCCAGGG 59.485 57.895 4.39 0.00 0.00 4.45
425 426 1.077625 TTATTTTGCGGGCCAGGGT 59.922 52.632 4.39 0.00 0.00 4.34
426 427 1.254284 TTATTTTGCGGGCCAGGGTG 61.254 55.000 4.39 0.00 0.00 4.61
427 428 2.433646 TATTTTGCGGGCCAGGGTGT 62.434 55.000 4.39 0.00 0.00 4.16
428 429 3.904703 TATTTTGCGGGCCAGGGTGTT 62.905 52.381 4.39 0.00 0.00 3.32
429 430 4.531426 TTGCGGGCCAGGGTGTTT 62.531 61.111 4.39 0.00 0.00 2.83
430 431 4.531426 TGCGGGCCAGGGTGTTTT 62.531 61.111 4.39 0.00 0.00 2.43
431 432 3.989787 GCGGGCCAGGGTGTTTTG 61.990 66.667 4.39 0.00 0.00 2.44
432 433 3.989787 CGGGCCAGGGTGTTTTGC 61.990 66.667 4.39 0.00 0.00 3.68
433 434 3.989787 GGGCCAGGGTGTTTTGCG 61.990 66.667 4.39 0.00 0.00 4.85
434 435 3.989787 GGCCAGGGTGTTTTGCGG 61.990 66.667 0.00 0.00 0.00 5.69
435 436 3.989787 GCCAGGGTGTTTTGCGGG 61.990 66.667 0.00 0.00 0.00 6.13
436 437 3.302344 CCAGGGTGTTTTGCGGGG 61.302 66.667 0.00 0.00 0.00 5.73
437 438 2.520741 CAGGGTGTTTTGCGGGGT 60.521 61.111 0.00 0.00 0.00 4.95
438 439 2.203437 AGGGTGTTTTGCGGGGTC 60.203 61.111 0.00 0.00 0.00 4.46
439 440 2.203437 GGGTGTTTTGCGGGGTCT 60.203 61.111 0.00 0.00 0.00 3.85
440 441 2.561037 GGGTGTTTTGCGGGGTCTG 61.561 63.158 0.00 0.00 0.00 3.51
441 442 2.335011 GTGTTTTGCGGGGTCTGC 59.665 61.111 0.00 0.00 0.00 4.26
442 443 2.193536 GTGTTTTGCGGGGTCTGCT 61.194 57.895 0.30 0.00 0.00 4.24
443 444 0.887387 GTGTTTTGCGGGGTCTGCTA 60.887 55.000 0.30 0.00 0.00 3.49
444 445 0.605319 TGTTTTGCGGGGTCTGCTAG 60.605 55.000 0.30 0.00 0.00 3.42
445 446 0.321298 GTTTTGCGGGGTCTGCTAGA 60.321 55.000 0.00 0.00 0.00 2.43
446 447 0.036388 TTTTGCGGGGTCTGCTAGAG 60.036 55.000 0.00 0.00 0.00 2.43
447 448 1.192146 TTTGCGGGGTCTGCTAGAGT 61.192 55.000 0.00 0.00 0.00 3.24
448 449 1.192146 TTGCGGGGTCTGCTAGAGTT 61.192 55.000 0.00 0.00 0.00 3.01
449 450 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
450 451 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
451 452 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
452 453 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
453 454 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
454 455 1.552792 GGGTCTGCTAGAGTTGCTCTT 59.447 52.381 3.87 0.00 41.50 2.85
455 456 2.761208 GGGTCTGCTAGAGTTGCTCTTA 59.239 50.000 3.87 0.00 41.50 2.10
456 457 3.181480 GGGTCTGCTAGAGTTGCTCTTAG 60.181 52.174 3.87 2.21 41.50 2.18
457 458 3.697045 GGTCTGCTAGAGTTGCTCTTAGA 59.303 47.826 3.87 4.26 41.50 2.10
458 459 4.340950 GGTCTGCTAGAGTTGCTCTTAGAT 59.659 45.833 3.87 0.00 41.50 1.98
459 460 5.533154 GGTCTGCTAGAGTTGCTCTTAGATA 59.467 44.000 3.87 0.00 41.50 1.98
460 461 6.293955 GGTCTGCTAGAGTTGCTCTTAGATAG 60.294 46.154 3.87 0.00 41.50 2.08
461 462 5.767665 TCTGCTAGAGTTGCTCTTAGATAGG 59.232 44.000 3.87 0.00 41.50 2.57
462 463 5.450453 TGCTAGAGTTGCTCTTAGATAGGT 58.550 41.667 3.87 0.00 41.50 3.08
463 464 5.300539 TGCTAGAGTTGCTCTTAGATAGGTG 59.699 44.000 3.87 0.00 41.50 4.00
464 465 4.664150 AGAGTTGCTCTTAGATAGGTGC 57.336 45.455 0.00 0.00 37.60 5.01
465 466 4.026744 AGAGTTGCTCTTAGATAGGTGCA 58.973 43.478 0.00 0.00 37.60 4.57
466 467 4.467795 AGAGTTGCTCTTAGATAGGTGCAA 59.532 41.667 7.19 7.19 37.60 4.08
467 468 4.764172 AGTTGCTCTTAGATAGGTGCAAG 58.236 43.478 10.51 0.00 41.06 4.01
468 469 3.185246 TGCTCTTAGATAGGTGCAAGC 57.815 47.619 0.00 0.00 33.27 4.01
469 470 2.158900 TGCTCTTAGATAGGTGCAAGCC 60.159 50.000 0.00 0.00 33.27 4.35
470 471 2.748605 CTCTTAGATAGGTGCAAGCCG 58.251 52.381 0.00 0.00 32.25 5.52
471 472 1.412710 TCTTAGATAGGTGCAAGCCGG 59.587 52.381 0.00 0.00 32.25 6.13
472 473 1.412710 CTTAGATAGGTGCAAGCCGGA 59.587 52.381 5.05 0.00 32.25 5.14
473 474 1.491668 TAGATAGGTGCAAGCCGGAA 58.508 50.000 5.05 0.00 32.25 4.30
474 475 0.179000 AGATAGGTGCAAGCCGGAAG 59.821 55.000 5.05 0.00 32.25 3.46
475 476 0.107654 GATAGGTGCAAGCCGGAAGT 60.108 55.000 5.05 0.00 32.25 3.01
476 477 0.328258 ATAGGTGCAAGCCGGAAGTT 59.672 50.000 5.05 0.00 32.25 2.66
477 478 0.109723 TAGGTGCAAGCCGGAAGTTT 59.890 50.000 5.05 0.00 32.25 2.66
478 479 0.755327 AGGTGCAAGCCGGAAGTTTT 60.755 50.000 5.05 0.00 32.25 2.43
479 480 0.104120 GGTGCAAGCCGGAAGTTTTT 59.896 50.000 5.05 0.00 0.00 1.94
504 505 3.817709 TTTTTGAGGGAAAGGTGCAAG 57.182 42.857 0.00 0.00 0.00 4.01
505 506 1.039856 TTTGAGGGAAAGGTGCAAGC 58.960 50.000 0.00 0.00 0.00 4.01
506 507 0.827507 TTGAGGGAAAGGTGCAAGCC 60.828 55.000 0.00 0.00 32.25 4.35
507 508 2.282462 AGGGAAAGGTGCAAGCCG 60.282 61.111 0.00 0.00 32.25 5.52
508 509 3.373565 GGGAAAGGTGCAAGCCGG 61.374 66.667 0.00 0.00 32.25 6.13
509 510 2.282180 GGAAAGGTGCAAGCCGGA 60.282 61.111 5.05 0.00 32.25 5.14
510 511 2.335712 GGAAAGGTGCAAGCCGGAG 61.336 63.158 5.05 0.00 32.25 4.63
511 512 1.600916 GAAAGGTGCAAGCCGGAGT 60.601 57.895 5.05 0.00 32.25 3.85
512 513 1.152756 AAAGGTGCAAGCCGGAGTT 60.153 52.632 5.05 0.00 32.25 3.01
513 514 1.455383 AAAGGTGCAAGCCGGAGTTG 61.455 55.000 5.05 9.38 32.25 3.16
514 515 3.365265 GGTGCAAGCCGGAGTTGG 61.365 66.667 5.05 0.00 0.00 3.77
539 540 3.214123 CGATGCCCTACGACCCGA 61.214 66.667 0.00 0.00 0.00 5.14
540 541 2.416260 GATGCCCTACGACCCGAC 59.584 66.667 0.00 0.00 0.00 4.79
541 542 3.148031 GATGCCCTACGACCCGACC 62.148 68.421 0.00 0.00 0.00 4.79
569 570 4.195308 GCCTCGCCACATTCGTTA 57.805 55.556 0.00 0.00 0.00 3.18
628 629 3.075005 CCGACCCACCTCGTCCAT 61.075 66.667 0.00 0.00 31.35 3.41
629 630 2.494918 CGACCCACCTCGTCCATC 59.505 66.667 0.00 0.00 0.00 3.51
630 631 2.901042 GACCCACCTCGTCCATCC 59.099 66.667 0.00 0.00 0.00 3.51
631 632 2.687566 ACCCACCTCGTCCATCCC 60.688 66.667 0.00 0.00 0.00 3.85
632 633 2.365635 CCCACCTCGTCCATCCCT 60.366 66.667 0.00 0.00 0.00 4.20
633 634 2.435693 CCCACCTCGTCCATCCCTC 61.436 68.421 0.00 0.00 0.00 4.30
634 635 2.435693 CCACCTCGTCCATCCCTCC 61.436 68.421 0.00 0.00 0.00 4.30
635 636 1.381872 CACCTCGTCCATCCCTCCT 60.382 63.158 0.00 0.00 0.00 3.69
636 637 1.075896 ACCTCGTCCATCCCTCCTC 60.076 63.158 0.00 0.00 0.00 3.71
637 638 2.196925 CCTCGTCCATCCCTCCTCG 61.197 68.421 0.00 0.00 0.00 4.63
638 639 1.454111 CTCGTCCATCCCTCCTCGT 60.454 63.158 0.00 0.00 0.00 4.18
639 640 1.448922 CTCGTCCATCCCTCCTCGTC 61.449 65.000 0.00 0.00 0.00 4.20
640 641 2.491022 CGTCCATCCCTCCTCGTCC 61.491 68.421 0.00 0.00 0.00 4.79
641 642 2.134933 GTCCATCCCTCCTCGTCCC 61.135 68.421 0.00 0.00 0.00 4.46
642 643 2.283809 CCATCCCTCCTCGTCCCT 59.716 66.667 0.00 0.00 0.00 4.20
643 644 1.834822 CCATCCCTCCTCGTCCCTC 60.835 68.421 0.00 0.00 0.00 4.30
644 645 1.075970 CATCCCTCCTCGTCCCTCA 60.076 63.158 0.00 0.00 0.00 3.86
645 646 1.075896 ATCCCTCCTCGTCCCTCAC 60.076 63.158 0.00 0.00 0.00 3.51
646 647 2.591193 ATCCCTCCTCGTCCCTCACC 62.591 65.000 0.00 0.00 0.00 4.02
647 648 2.760385 CCTCCTCGTCCCTCACCC 60.760 72.222 0.00 0.00 0.00 4.61
648 649 3.141488 CTCCTCGTCCCTCACCCG 61.141 72.222 0.00 0.00 0.00 5.28
696 697 3.221389 GGCGGCATGGCATGTGAT 61.221 61.111 26.94 0.00 44.08 3.06
697 698 2.788640 GGCGGCATGGCATGTGATT 61.789 57.895 26.94 0.00 44.08 2.57
698 699 1.142314 GCGGCATGGCATGTGATTT 59.858 52.632 26.94 0.00 0.00 2.17
699 700 1.149361 GCGGCATGGCATGTGATTTG 61.149 55.000 26.94 12.39 0.00 2.32
700 701 0.456628 CGGCATGGCATGTGATTTGA 59.543 50.000 26.94 0.00 0.00 2.69
701 702 1.067974 CGGCATGGCATGTGATTTGAT 59.932 47.619 26.94 0.00 0.00 2.57
702 703 2.482316 CGGCATGGCATGTGATTTGATT 60.482 45.455 26.94 0.00 0.00 2.57
704 705 3.128349 GCATGGCATGTGATTTGATTCC 58.872 45.455 26.94 3.65 0.00 3.01
706 707 2.445427 TGGCATGTGATTTGATTCCGT 58.555 42.857 0.00 0.00 0.00 4.69
707 708 2.423185 TGGCATGTGATTTGATTCCGTC 59.577 45.455 0.00 0.00 0.00 4.79
709 710 3.129287 GGCATGTGATTTGATTCCGTCTT 59.871 43.478 0.00 0.00 0.00 3.01
710 711 4.100529 GCATGTGATTTGATTCCGTCTTG 58.899 43.478 0.00 0.00 0.00 3.02
711 712 4.665212 CATGTGATTTGATTCCGTCTTGG 58.335 43.478 0.00 0.00 40.09 3.61
712 713 3.081061 TGTGATTTGATTCCGTCTTGGG 58.919 45.455 0.00 0.00 38.76 4.12
725 726 6.555463 TCCGTCTTGGGAATTTTATCTACT 57.445 37.500 0.00 0.00 38.76 2.57
726 727 6.579865 TCCGTCTTGGGAATTTTATCTACTC 58.420 40.000 0.00 0.00 38.76 2.59
727 728 5.462398 CCGTCTTGGGAATTTTATCTACTCG 59.538 44.000 0.00 0.00 0.00 4.18
732 733 5.123227 TGGGAATTTTATCTACTCGCCTTG 58.877 41.667 0.00 0.00 0.00 3.61
734 735 5.365619 GGAATTTTATCTACTCGCCTTGGA 58.634 41.667 0.00 0.00 0.00 3.53
739 740 2.738587 TCTACTCGCCTTGGATCTCT 57.261 50.000 0.00 0.00 0.00 3.10
746 747 2.365617 TCGCCTTGGATCTCTACCATTC 59.634 50.000 0.00 0.00 37.26 2.67
748 749 2.760374 CCTTGGATCTCTACCATTCGC 58.240 52.381 0.00 0.00 37.26 4.70
814 851 1.081376 CGACTCGAGCGAACCAACT 60.081 57.895 19.91 0.00 0.00 3.16
876 913 3.262778 TTTACCTCGCCCCTCCCCT 62.263 63.158 0.00 0.00 0.00 4.79
877 914 3.691297 TTACCTCGCCCCTCCCCTC 62.691 68.421 0.00 0.00 0.00 4.30
1208 1535 2.341677 CCCCTTCCCCTCCCCTCTA 61.342 68.421 0.00 0.00 0.00 2.43
1252 1580 0.539051 CTCAGCCCCTGAATTCTCGT 59.461 55.000 7.05 0.00 40.18 4.18
1269 1597 1.153429 GTTACCCGATTGCTCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
1293 1621 2.176546 CGGCGCTGTGAATTGTGG 59.823 61.111 8.45 0.00 0.00 4.17
1305 1633 0.899717 AATTGTGGCTGAATGCGGGT 60.900 50.000 0.00 0.00 44.05 5.28
1323 1651 4.109693 GCATTTTCGCCGCGGGAA 62.110 61.111 29.38 24.24 32.81 3.97
1336 1664 2.840974 CGGGAATTCAGTCACGCTT 58.159 52.632 7.93 0.00 37.66 4.68
1360 1688 3.049912 GTTTTCATGTCCTTTGTTCGCC 58.950 45.455 0.00 0.00 0.00 5.54
1413 1747 1.673337 GTGGCGGTCTGGGGTTTAC 60.673 63.158 0.00 0.00 0.00 2.01
1416 1750 1.078637 GCGGTCTGGGGTTTACCTC 60.079 63.158 0.00 0.00 40.03 3.85
1432 1773 1.517832 CTCTACAGCCAAGTCCCCG 59.482 63.158 0.00 0.00 0.00 5.73
1461 1802 4.526970 AGCAACGATTCCTTGATTGGTAT 58.473 39.130 0.00 0.00 0.00 2.73
1462 1803 4.949856 AGCAACGATTCCTTGATTGGTATT 59.050 37.500 0.00 0.00 0.00 1.89
1463 1804 5.036737 GCAACGATTCCTTGATTGGTATTG 58.963 41.667 0.00 0.00 0.00 1.90
1464 1805 5.163663 GCAACGATTCCTTGATTGGTATTGA 60.164 40.000 0.00 0.00 0.00 2.57
1465 1806 6.460123 GCAACGATTCCTTGATTGGTATTGAT 60.460 38.462 0.00 0.00 0.00 2.57
1466 1807 7.483307 CAACGATTCCTTGATTGGTATTGATT 58.517 34.615 0.00 0.00 0.00 2.57
1467 1808 7.031226 ACGATTCCTTGATTGGTATTGATTG 57.969 36.000 0.00 0.00 0.00 2.67
1468 1809 6.039717 ACGATTCCTTGATTGGTATTGATTGG 59.960 38.462 0.00 0.00 0.00 3.16
1469 1810 6.039717 CGATTCCTTGATTGGTATTGATTGGT 59.960 38.462 0.00 0.00 0.00 3.67
1488 1829 2.607668 TAGGAGATGCGCGTCAACCG 62.608 60.000 30.02 0.00 40.40 4.44
1515 1856 0.906282 TCCCTTCCCCGGTTGTCTAC 60.906 60.000 0.00 0.00 0.00 2.59
1568 1909 0.956633 CAACTTGTCAGCTGCACCAT 59.043 50.000 9.47 0.00 0.00 3.55
1588 1929 6.434028 CACCATATCCCCCAATTATTGTACAG 59.566 42.308 4.15 0.00 0.00 2.74
1589 1930 6.334237 ACCATATCCCCCAATTATTGTACAGA 59.666 38.462 4.15 0.00 0.00 3.41
1628 1969 9.529823 TCATCCGGAGTTCAGTATTATACTATT 57.470 33.333 11.34 0.00 37.23 1.73
1690 2031 4.806330 TGTAACCGCAAAAACAGAACAAA 58.194 34.783 0.00 0.00 0.00 2.83
1691 2032 5.411781 TGTAACCGCAAAAACAGAACAAAT 58.588 33.333 0.00 0.00 0.00 2.32
1693 2034 7.203910 TGTAACCGCAAAAACAGAACAAATAT 58.796 30.769 0.00 0.00 0.00 1.28
1694 2035 7.707035 TGTAACCGCAAAAACAGAACAAATATT 59.293 29.630 0.00 0.00 0.00 1.28
1695 2036 6.523676 ACCGCAAAAACAGAACAAATATTG 57.476 33.333 0.00 0.00 0.00 1.90
1696 2037 5.465056 ACCGCAAAAACAGAACAAATATTGG 59.535 36.000 0.00 0.00 34.12 3.16
1697 2038 5.107143 CCGCAAAAACAGAACAAATATTGGG 60.107 40.000 0.00 0.00 34.12 4.12
1698 2039 5.694006 CGCAAAAACAGAACAAATATTGGGA 59.306 36.000 0.00 0.00 33.06 4.37
1699 2040 6.346518 CGCAAAAACAGAACAAATATTGGGAC 60.347 38.462 0.00 0.00 33.06 4.46
1702 2043 7.839680 AAAACAGAACAAATATTGGGACTCT 57.160 32.000 0.00 0.00 34.12 3.24
1703 2044 8.934023 AAAACAGAACAAATATTGGGACTCTA 57.066 30.769 0.00 0.00 34.12 2.43
1704 2045 9.533831 AAAACAGAACAAATATTGGGACTCTAT 57.466 29.630 0.00 0.00 34.12 1.98
1705 2046 8.738645 AACAGAACAAATATTGGGACTCTATC 57.261 34.615 0.00 0.00 34.12 2.08
1706 2047 8.095452 ACAGAACAAATATTGGGACTCTATCT 57.905 34.615 0.00 0.00 34.12 1.98
1707 2048 8.207545 ACAGAACAAATATTGGGACTCTATCTC 58.792 37.037 0.00 0.00 34.12 2.75
1708 2049 8.206867 CAGAACAAATATTGGGACTCTATCTCA 58.793 37.037 0.00 0.00 35.31 3.27
1709 2050 8.943085 AGAACAAATATTGGGACTCTATCTCAT 58.057 33.333 0.00 0.00 37.76 2.90
1710 2051 9.213799 GAACAAATATTGGGACTCTATCTCATC 57.786 37.037 0.00 0.00 37.76 2.92
1711 2052 8.503428 ACAAATATTGGGACTCTATCTCATCT 57.497 34.615 0.00 0.00 37.76 2.90
1789 2144 1.063717 TCCCCAAATCCTTCCAGATGC 60.064 52.381 0.00 0.00 0.00 3.91
1792 2147 2.305009 CCAAATCCTTCCAGATGCCTC 58.695 52.381 0.00 0.00 0.00 4.70
1812 2167 0.538118 GGATGCCACATGCCATGTTT 59.462 50.000 7.80 0.00 42.70 2.83
1814 2169 0.538118 ATGCCACATGCCATGTTTCC 59.462 50.000 7.80 0.02 42.70 3.13
1890 2245 1.103803 TGTCTGTCCGTATCTGCTCC 58.896 55.000 0.00 0.00 0.00 4.70
1957 2312 4.274705 TGCTCTCACTCTAAGAGATAAGCG 59.725 45.833 4.38 0.00 42.39 4.68
2008 2363 8.694394 CGTTTTGGAGTAACTGTAAACTAGTAC 58.306 37.037 0.00 0.00 0.00 2.73
2009 2364 9.755804 GTTTTGGAGTAACTGTAAACTAGTACT 57.244 33.333 0.00 0.00 0.00 2.73
2148 2506 6.569228 TTTAATGAACTAGAGATCGTTGCG 57.431 37.500 0.00 0.00 30.37 4.85
2150 2508 3.132629 TGAACTAGAGATCGTTGCGAC 57.867 47.619 0.00 0.00 39.18 5.19
2172 2531 3.492313 GCATTTAGCAAGCGTATATGGC 58.508 45.455 0.00 0.00 44.79 4.40
2208 2567 2.164422 TCACTGTGAGGCTACATCGAAG 59.836 50.000 6.36 0.00 0.00 3.79
2241 2600 5.824904 ATGATCAGTGCTTTTTATTCGCT 57.175 34.783 0.09 0.00 0.00 4.93
2459 2825 0.988145 TGTCTTATCCCCTGCCCCAG 60.988 60.000 0.00 0.00 0.00 4.45
2505 2871 5.425217 TCTGTCTATTTTCCCTGCATCTGTA 59.575 40.000 0.00 0.00 0.00 2.74
2506 2872 5.428253 TGTCTATTTTCCCTGCATCTGTAC 58.572 41.667 0.00 0.00 0.00 2.90
2507 2873 5.189736 TGTCTATTTTCCCTGCATCTGTACT 59.810 40.000 0.00 0.00 0.00 2.73
2508 2874 5.755861 GTCTATTTTCCCTGCATCTGTACTC 59.244 44.000 0.00 0.00 0.00 2.59
2939 3306 1.467342 GGGTTTGGCAACTACGACATC 59.533 52.381 0.00 0.00 32.90 3.06
2996 3363 1.713297 AGACTGGACTTGTACCCGTT 58.287 50.000 0.00 0.00 0.00 4.44
3005 3372 2.105134 ACTTGTACCCGTTGATGAACCA 59.895 45.455 0.00 0.00 0.00 3.67
3185 3552 2.069273 AGAAAGGATGTCGCGAAAGTG 58.931 47.619 12.06 0.00 44.62 3.16
3250 3617 3.057969 AGATGCAGAATCGGTGAACAA 57.942 42.857 0.00 0.00 40.54 2.83
3251 3618 3.005554 AGATGCAGAATCGGTGAACAAG 58.994 45.455 0.00 0.00 40.54 3.16
3333 3700 2.294233 CGATGCAATTTGGGGGAGTATG 59.706 50.000 0.00 0.00 0.00 2.39
3339 3706 2.806945 TTTGGGGGAGTATGAGCTTG 57.193 50.000 0.00 0.00 0.00 4.01
3355 3722 1.935065 CTTGTCTGCGCTTCGTCGTC 61.935 60.000 9.73 0.00 0.00 4.20
3359 3726 4.634133 TGCGCTTCGTCGTCGGTT 62.634 61.111 9.73 0.00 37.69 4.44
3414 3784 8.631480 TCTATGCTTCAGTATATTAAGGTCGA 57.369 34.615 0.00 0.00 0.00 4.20
3415 3785 9.244292 TCTATGCTTCAGTATATTAAGGTCGAT 57.756 33.333 0.00 0.00 0.00 3.59
3488 3858 0.304098 GCACTTCGCATGATGAGCTC 59.696 55.000 6.82 6.82 41.79 4.09
3509 3879 5.477607 TCAAGAATTCTCCGAACTGGTTA 57.522 39.130 8.78 0.00 39.52 2.85
3578 3970 2.961526 ACTGCCCAGTCTATTGTACG 57.038 50.000 0.00 0.00 36.92 3.67
3579 3971 1.480954 ACTGCCCAGTCTATTGTACGG 59.519 52.381 0.00 0.00 36.92 4.02
3580 3972 0.177141 TGCCCAGTCTATTGTACGGC 59.823 55.000 0.00 0.00 0.00 5.68
3581 3973 0.874607 GCCCAGTCTATTGTACGGCG 60.875 60.000 4.80 4.80 0.00 6.46
3582 3974 0.249322 CCCAGTCTATTGTACGGCGG 60.249 60.000 13.24 0.00 0.00 6.13
3583 3975 0.874607 CCAGTCTATTGTACGGCGGC 60.875 60.000 13.24 0.00 0.00 6.53
3584 3976 0.102481 CAGTCTATTGTACGGCGGCT 59.898 55.000 13.24 0.00 0.00 5.52
3585 3977 0.384669 AGTCTATTGTACGGCGGCTC 59.615 55.000 13.24 1.18 0.00 4.70
3586 3978 0.933509 GTCTATTGTACGGCGGCTCG 60.934 60.000 13.24 4.55 0.00 5.03
3587 3979 1.065273 CTATTGTACGGCGGCTCGT 59.935 57.895 13.24 17.83 45.88 4.18
3588 3980 1.206745 CTATTGTACGGCGGCTCGTG 61.207 60.000 21.23 4.16 43.70 4.35
3589 3981 1.936436 TATTGTACGGCGGCTCGTGT 61.936 55.000 21.23 9.12 43.70 4.49
3590 3982 2.775032 ATTGTACGGCGGCTCGTGTT 62.775 55.000 21.23 3.19 43.70 3.32
3678 4107 2.431454 GGTTTTCCTTCTGAGCTCTGG 58.569 52.381 19.23 13.42 36.94 3.86
3710 4139 0.381801 CGAATTCCTCCATTTGGCCG 59.618 55.000 0.00 0.00 34.44 6.13
3714 4144 0.610785 TTCCTCCATTTGGCCGTTCC 60.611 55.000 0.00 0.00 34.44 3.62
3715 4145 1.000896 CCTCCATTTGGCCGTTCCT 60.001 57.895 0.00 0.00 35.26 3.36
3717 4147 0.811281 CTCCATTTGGCCGTTCCTTC 59.189 55.000 0.00 0.00 35.26 3.46
3741 4171 2.225091 TGAGTCACCCAAGATGGCAAAT 60.225 45.455 0.00 0.00 35.79 2.32
3770 4201 1.339929 GGGCGTGTTTCCACTTTTCAT 59.660 47.619 0.00 0.00 39.55 2.57
3775 4206 2.882137 GTGTTTCCACTTTTCATCGGGA 59.118 45.455 0.00 0.00 38.61 5.14
3799 4230 6.710597 AGGACTATTCAGCGTAGTTTATCA 57.289 37.500 0.00 0.00 32.77 2.15
3801 4232 5.690857 GGACTATTCAGCGTAGTTTATCACC 59.309 44.000 0.00 0.00 32.77 4.02
3850 4321 1.338200 ACCACGAGATTCTTCACTGCC 60.338 52.381 0.00 0.00 0.00 4.85
3853 4324 3.070018 CACGAGATTCTTCACTGCCTTT 58.930 45.455 0.00 0.00 0.00 3.11
3854 4325 3.070018 ACGAGATTCTTCACTGCCTTTG 58.930 45.455 0.00 0.00 0.00 2.77
3981 4457 3.755378 ACCTTCGCTTCGTCTTCTAGTAA 59.245 43.478 0.00 0.00 0.00 2.24
4019 4495 4.106925 CTGGCAGCTGACCCCTCC 62.107 72.222 19.23 8.06 0.00 4.30
4053 4529 4.065088 TCTCTTGTTTTCAACCGATCCTG 58.935 43.478 0.00 0.00 35.77 3.86
4057 4533 1.810755 GTTTTCAACCGATCCTGTCCC 59.189 52.381 0.00 0.00 0.00 4.46
4058 4534 1.358152 TTTCAACCGATCCTGTCCCT 58.642 50.000 0.00 0.00 0.00 4.20
4059 4535 0.613260 TTCAACCGATCCTGTCCCTG 59.387 55.000 0.00 0.00 0.00 4.45
4112 6075 2.107953 GAGTGGAGATCTGGGCGC 59.892 66.667 0.00 0.00 0.00 6.53
4132 6095 0.610785 GGATTTGGCCGGACAAAGGA 60.611 55.000 36.81 18.57 42.91 3.36
4133 6096 0.811281 GATTTGGCCGGACAAAGGAG 59.189 55.000 36.81 0.00 42.91 3.69
4134 6097 1.250840 ATTTGGCCGGACAAAGGAGC 61.251 55.000 36.81 3.60 42.91 4.70
4135 6098 4.697756 TGGCCGGACAAAGGAGCG 62.698 66.667 8.12 0.00 0.00 5.03
4137 6100 4.388499 GCCGGACAAAGGAGCGGA 62.388 66.667 5.05 0.00 0.00 5.54
4210 6177 3.704566 CACTGGGTCTACATACAGGCTAA 59.295 47.826 0.00 0.00 35.34 3.09
4291 6284 2.223923 CGGCCAGATTCTTCCTAGTGAG 60.224 54.545 2.24 0.00 0.00 3.51
4323 6319 6.128138 AGAAACCTGCTCCACTTTATTACT 57.872 37.500 0.00 0.00 0.00 2.24
4326 6322 5.091261 ACCTGCTCCACTTTATTACTCAG 57.909 43.478 0.00 0.00 0.00 3.35
4343 6339 4.910195 ACTCAGTTGATGTTCATAGGCAA 58.090 39.130 0.00 0.00 0.00 4.52
4355 6351 5.355071 TGTTCATAGGCAACATCACAAGATC 59.645 40.000 0.00 0.00 41.41 2.75
4364 6389 7.123098 AGGCAACATCACAAGATCATTGAATTA 59.877 33.333 10.61 0.00 41.41 1.40
4389 6416 7.833285 TTCTAGCACTATTTTTCCCAAACTT 57.167 32.000 0.00 0.00 0.00 2.66
4395 6422 9.674068 AGCACTATTTTTCCCAAACTTTAAAAA 57.326 25.926 0.00 0.00 35.83 1.94
4396 6423 9.710979 GCACTATTTTTCCCAAACTTTAAAAAC 57.289 29.630 0.00 0.00 34.63 2.43
4403 6430 6.223351 TCCCAAACTTTAAAAACCGAATGT 57.777 33.333 0.00 0.00 0.00 2.71
4426 6453 0.798776 ATTTTCTGCAGGTTCGAGCG 59.201 50.000 15.13 0.00 0.00 5.03
4445 6472 2.607187 CGAACGTCTCAGCTACCATTT 58.393 47.619 0.00 0.00 0.00 2.32
4446 6473 3.766151 CGAACGTCTCAGCTACCATTTA 58.234 45.455 0.00 0.00 0.00 1.40
4450 6477 6.183360 CGAACGTCTCAGCTACCATTTAATTT 60.183 38.462 0.00 0.00 0.00 1.82
4483 6510 2.391389 GGCGCACAAGCTCTACCAC 61.391 63.158 10.83 0.00 39.10 4.16
4485 6512 1.372997 CGCACAAGCTCTACCACGT 60.373 57.895 0.00 0.00 39.10 4.49
4487 6514 0.319555 GCACAAGCTCTACCACGTCA 60.320 55.000 0.00 0.00 37.91 4.35
4488 6515 1.419374 CACAAGCTCTACCACGTCAC 58.581 55.000 0.00 0.00 0.00 3.67
4489 6516 0.039437 ACAAGCTCTACCACGTCACG 60.039 55.000 0.00 0.00 0.00 4.35
4490 6517 1.080705 AAGCTCTACCACGTCACGC 60.081 57.895 0.00 0.00 0.00 5.34
4497 6524 2.066262 CTACCACGTCACGCTTTTCAT 58.934 47.619 0.00 0.00 0.00 2.57
4505 6532 2.097104 GTCACGCTTTTCATTCGTTCGA 60.097 45.455 0.00 0.00 33.84 3.71
4512 6539 5.193936 GCTTTTCATTCGTTCGATCAGATC 58.806 41.667 0.00 0.00 0.00 2.75
4513 6540 5.006165 GCTTTTCATTCGTTCGATCAGATCT 59.994 40.000 8.82 0.00 0.00 2.75
4514 6541 5.956171 TTTCATTCGTTCGATCAGATCTG 57.044 39.130 17.07 17.07 0.00 2.90
4515 6542 4.639135 TCATTCGTTCGATCAGATCTGT 57.361 40.909 21.92 9.83 0.00 3.41
4516 6543 4.602006 TCATTCGTTCGATCAGATCTGTC 58.398 43.478 21.92 16.51 0.00 3.51
4517 6544 4.336713 TCATTCGTTCGATCAGATCTGTCT 59.663 41.667 21.92 11.05 34.14 3.41
4518 6545 3.953874 TCGTTCGATCAGATCTGTCTC 57.046 47.619 21.92 17.49 30.42 3.36
4519 6546 2.285488 TCGTTCGATCAGATCTGTCTCG 59.715 50.000 28.69 28.69 37.79 4.04
4520 6547 2.601029 CGTTCGATCAGATCTGTCTCGG 60.601 54.545 31.15 20.42 37.40 4.63
4521 6548 0.947960 TCGATCAGATCTGTCTCGGC 59.052 55.000 31.15 14.96 37.40 5.54
4522 6549 0.665298 CGATCAGATCTGTCTCGGCA 59.335 55.000 27.74 10.39 35.16 5.69
4523 6550 1.599171 CGATCAGATCTGTCTCGGCAC 60.599 57.143 27.74 12.07 35.16 5.01
4536 6563 2.740826 GGCACGAAGGCGCTACAA 60.741 61.111 7.64 0.00 42.48 2.41
4537 6564 2.322081 GGCACGAAGGCGCTACAAA 61.322 57.895 7.64 0.00 42.48 2.83
4538 6565 1.132640 GCACGAAGGCGCTACAAAG 59.867 57.895 7.64 0.00 42.48 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.418401 CGTTGCCGGCCATGTTGG 62.418 66.667 26.77 1.83 41.55 3.77
51 52 3.326889 CTCGTTGCCGGCCATGTTG 62.327 63.158 26.77 12.05 33.95 3.33
52 53 2.819984 ATCTCGTTGCCGGCCATGTT 62.820 55.000 26.77 5.41 33.95 2.71
53 54 3.329542 ATCTCGTTGCCGGCCATGT 62.330 57.895 26.77 0.00 33.95 3.21
54 55 2.514592 ATCTCGTTGCCGGCCATG 60.515 61.111 26.77 19.67 33.95 3.66
55 56 2.203070 GATCTCGTTGCCGGCCAT 60.203 61.111 26.77 5.86 33.95 4.40
56 57 4.467084 GGATCTCGTTGCCGGCCA 62.467 66.667 26.77 11.12 33.95 5.36
62 63 4.508128 TCGGGCGGATCTCGTTGC 62.508 66.667 5.66 0.00 41.72 4.17
63 64 2.278857 CTCGGGCGGATCTCGTTG 60.279 66.667 0.00 0.00 41.72 4.10
64 65 3.528370 CCTCGGGCGGATCTCGTT 61.528 66.667 0.00 0.00 41.72 3.85
67 68 4.916314 TCCCCTCGGGCGGATCTC 62.916 72.222 0.00 0.00 43.94 2.75
68 69 4.475444 TTCCCCTCGGGCGGATCT 62.475 66.667 0.00 0.00 43.94 2.75
69 70 3.930012 CTTCCCCTCGGGCGGATC 61.930 72.222 0.00 0.00 43.94 3.36
76 77 4.195334 CATGCCCCTTCCCCTCGG 62.195 72.222 0.00 0.00 0.00 4.63
77 78 4.883354 GCATGCCCCTTCCCCTCG 62.883 72.222 6.36 0.00 0.00 4.63
78 79 4.883354 CGCATGCCCCTTCCCCTC 62.883 72.222 13.15 0.00 0.00 4.30
103 104 4.065281 CTGTCCCCCGTCACCGTC 62.065 72.222 0.00 0.00 0.00 4.79
106 107 3.717294 ATGCTGTCCCCCGTCACC 61.717 66.667 0.00 0.00 0.00 4.02
107 108 2.436646 CATGCTGTCCCCCGTCAC 60.437 66.667 0.00 0.00 0.00 3.67
108 109 3.716195 CCATGCTGTCCCCCGTCA 61.716 66.667 0.00 0.00 0.00 4.35
109 110 4.489771 CCCATGCTGTCCCCCGTC 62.490 72.222 0.00 0.00 0.00 4.79
112 113 4.129148 GACCCCATGCTGTCCCCC 62.129 72.222 2.34 0.00 0.00 5.40
113 114 4.489771 CGACCCCATGCTGTCCCC 62.490 72.222 7.12 0.00 0.00 4.81
114 115 3.682292 GACGACCCCATGCTGTCCC 62.682 68.421 7.12 0.00 0.00 4.46
115 116 2.125106 GACGACCCCATGCTGTCC 60.125 66.667 7.12 0.00 0.00 4.02
116 117 2.125106 GGACGACCCCATGCTGTC 60.125 66.667 0.00 3.45 0.00 3.51
117 118 2.300967 ATGGACGACCCCATGCTGT 61.301 57.895 0.34 0.00 44.77 4.40
118 119 2.591753 ATGGACGACCCCATGCTG 59.408 61.111 0.34 0.00 44.77 4.41
164 165 4.840005 CCCTCCGAAAGCTCCGGC 62.840 72.222 19.23 0.00 46.10 6.13
166 167 4.162690 CCCCCTCCGAAAGCTCCG 62.163 72.222 0.00 0.00 0.00 4.63
185 186 4.740822 ACCCTCCGCCACCATTGC 62.741 66.667 0.00 0.00 0.00 3.56
186 187 2.751436 CACCCTCCGCCACCATTG 60.751 66.667 0.00 0.00 0.00 2.82
187 188 4.740822 GCACCCTCCGCCACCATT 62.741 66.667 0.00 0.00 0.00 3.16
214 215 3.810896 ATTTCCGCGCGCCCTTTC 61.811 61.111 27.36 0.00 0.00 2.62
215 216 4.114997 CATTTCCGCGCGCCCTTT 62.115 61.111 27.36 4.28 0.00 3.11
221 222 3.564027 GAGGGACATTTCCGCGCG 61.564 66.667 25.67 25.67 43.94 6.86
222 223 3.202706 GGAGGGACATTTCCGCGC 61.203 66.667 0.00 0.00 43.94 6.86
223 224 2.513897 GGGAGGGACATTTCCGCG 60.514 66.667 0.00 0.00 43.94 6.46
224 225 2.513897 CGGGAGGGACATTTCCGC 60.514 66.667 0.00 0.00 43.94 5.54
225 226 2.513897 GCGGGAGGGACATTTCCG 60.514 66.667 0.00 0.00 43.94 4.30
226 227 2.124278 GGCGGGAGGGACATTTCC 60.124 66.667 0.00 0.00 41.95 3.13
227 228 0.610785 TTTGGCGGGAGGGACATTTC 60.611 55.000 0.00 0.00 0.00 2.17
228 229 0.041090 ATTTGGCGGGAGGGACATTT 59.959 50.000 0.00 0.00 0.00 2.32
229 230 0.395724 GATTTGGCGGGAGGGACATT 60.396 55.000 0.00 0.00 0.00 2.71
230 231 1.227383 GATTTGGCGGGAGGGACAT 59.773 57.895 0.00 0.00 0.00 3.06
231 232 1.910580 GAGATTTGGCGGGAGGGACA 61.911 60.000 0.00 0.00 0.00 4.02
232 233 1.153147 GAGATTTGGCGGGAGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
233 234 2.731571 CGAGATTTGGCGGGAGGGA 61.732 63.158 0.00 0.00 0.00 4.20
234 235 2.203070 CGAGATTTGGCGGGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
235 236 2.897350 GCGAGATTTGGCGGGAGG 60.897 66.667 0.00 0.00 0.00 4.30
236 237 3.264897 CGCGAGATTTGGCGGGAG 61.265 66.667 0.00 0.00 46.10 4.30
242 243 2.588877 ATCCGGCGCGAGATTTGG 60.589 61.111 12.10 0.74 0.00 3.28
243 244 2.628106 CATCCGGCGCGAGATTTG 59.372 61.111 12.10 0.00 0.00 2.32
244 245 2.588877 CCATCCGGCGCGAGATTT 60.589 61.111 12.10 0.00 0.00 2.17
245 246 4.609018 CCCATCCGGCGCGAGATT 62.609 66.667 12.10 0.00 0.00 2.40
252 253 4.856801 CTCAACCCCCATCCGGCG 62.857 72.222 0.00 0.00 0.00 6.46
254 255 3.406595 GAGCTCAACCCCCATCCGG 62.407 68.421 9.40 0.00 0.00 5.14
255 256 2.190578 GAGCTCAACCCCCATCCG 59.809 66.667 9.40 0.00 0.00 4.18
256 257 2.190578 CGAGCTCAACCCCCATCC 59.809 66.667 15.40 0.00 0.00 3.51
257 258 2.190578 CCGAGCTCAACCCCCATC 59.809 66.667 15.40 0.00 0.00 3.51
258 259 3.411517 CCCGAGCTCAACCCCCAT 61.412 66.667 15.40 0.00 0.00 4.00
259 260 4.974438 ACCCGAGCTCAACCCCCA 62.974 66.667 15.40 0.00 0.00 4.96
260 261 4.097361 GACCCGAGCTCAACCCCC 62.097 72.222 15.40 0.00 0.00 5.40
261 262 4.452733 CGACCCGAGCTCAACCCC 62.453 72.222 15.40 0.00 0.00 4.95
262 263 4.452733 CCGACCCGAGCTCAACCC 62.453 72.222 15.40 0.00 0.00 4.11
279 280 4.864334 CATCACGGGCTGGGAGGC 62.864 72.222 3.86 0.00 40.51 4.70
280 281 1.121407 TATCATCACGGGCTGGGAGG 61.121 60.000 3.28 3.28 0.00 4.30
281 282 0.319728 CTATCATCACGGGCTGGGAG 59.680 60.000 3.86 0.00 0.00 4.30
282 283 0.105709 TCTATCATCACGGGCTGGGA 60.106 55.000 0.00 0.00 0.00 4.37
283 284 0.319728 CTCTATCATCACGGGCTGGG 59.680 60.000 0.00 0.00 0.00 4.45
284 285 0.319728 CCTCTATCATCACGGGCTGG 59.680 60.000 0.00 0.00 0.00 4.85
285 286 1.043816 ACCTCTATCATCACGGGCTG 58.956 55.000 0.00 0.00 0.00 4.85
286 287 1.414181 CAACCTCTATCATCACGGGCT 59.586 52.381 0.00 0.00 0.00 5.19
287 288 1.541233 CCAACCTCTATCATCACGGGC 60.541 57.143 0.00 0.00 0.00 6.13
288 289 1.070758 CCCAACCTCTATCATCACGGG 59.929 57.143 0.00 0.00 0.00 5.28
289 290 1.070758 CCCCAACCTCTATCATCACGG 59.929 57.143 0.00 0.00 0.00 4.94
290 291 2.036475 CTCCCCAACCTCTATCATCACG 59.964 54.545 0.00 0.00 0.00 4.35
291 292 3.309296 TCTCCCCAACCTCTATCATCAC 58.691 50.000 0.00 0.00 0.00 3.06
292 293 3.706389 TCTCCCCAACCTCTATCATCA 57.294 47.619 0.00 0.00 0.00 3.07
293 294 4.227197 TCTTCTCCCCAACCTCTATCATC 58.773 47.826 0.00 0.00 0.00 2.92
294 295 4.286813 TCTTCTCCCCAACCTCTATCAT 57.713 45.455 0.00 0.00 0.00 2.45
295 296 3.776731 TCTTCTCCCCAACCTCTATCA 57.223 47.619 0.00 0.00 0.00 2.15
296 297 5.372373 CAAATCTTCTCCCCAACCTCTATC 58.628 45.833 0.00 0.00 0.00 2.08
297 298 4.385754 GCAAATCTTCTCCCCAACCTCTAT 60.386 45.833 0.00 0.00 0.00 1.98
298 299 3.054361 GCAAATCTTCTCCCCAACCTCTA 60.054 47.826 0.00 0.00 0.00 2.43
299 300 2.291217 GCAAATCTTCTCCCCAACCTCT 60.291 50.000 0.00 0.00 0.00 3.69
300 301 2.095461 GCAAATCTTCTCCCCAACCTC 58.905 52.381 0.00 0.00 0.00 3.85
301 302 1.272704 GGCAAATCTTCTCCCCAACCT 60.273 52.381 0.00 0.00 0.00 3.50
302 303 1.186200 GGCAAATCTTCTCCCCAACC 58.814 55.000 0.00 0.00 0.00 3.77
303 304 0.811281 CGGCAAATCTTCTCCCCAAC 59.189 55.000 0.00 0.00 0.00 3.77
304 305 0.965363 GCGGCAAATCTTCTCCCCAA 60.965 55.000 0.00 0.00 0.00 4.12
305 306 1.378514 GCGGCAAATCTTCTCCCCA 60.379 57.895 0.00 0.00 0.00 4.96
306 307 2.472909 CGCGGCAAATCTTCTCCCC 61.473 63.158 0.00 0.00 0.00 4.81
307 308 3.102097 CGCGGCAAATCTTCTCCC 58.898 61.111 0.00 0.00 0.00 4.30
308 309 2.405191 GCGCGGCAAATCTTCTCC 59.595 61.111 8.83 0.00 0.00 3.71
309 310 2.405191 GGCGCGGCAAATCTTCTC 59.595 61.111 29.32 0.00 0.00 2.87
310 311 3.134127 GGGCGCGGCAAATCTTCT 61.134 61.111 34.30 0.00 0.00 2.85
311 312 4.193334 GGGGCGCGGCAAATCTTC 62.193 66.667 34.30 14.57 0.00 2.87
333 334 0.883153 GGTACCGGACCGCAATTTTT 59.117 50.000 9.46 0.00 38.87 1.94
334 335 2.558617 GGTACCGGACCGCAATTTT 58.441 52.632 9.46 0.00 38.87 1.82
335 336 4.306767 GGTACCGGACCGCAATTT 57.693 55.556 9.46 0.00 38.87 1.82
352 353 4.530857 GACCAGACCCCGCATCCG 62.531 72.222 0.00 0.00 0.00 4.18
353 354 2.746375 ATGACCAGACCCCGCATCC 61.746 63.158 0.00 0.00 0.00 3.51
354 355 1.524621 CATGACCAGACCCCGCATC 60.525 63.158 0.00 0.00 0.00 3.91
355 356 2.591753 CATGACCAGACCCCGCAT 59.408 61.111 0.00 0.00 0.00 4.73
356 357 4.408821 GCATGACCAGACCCCGCA 62.409 66.667 0.00 0.00 0.00 5.69
357 358 4.408821 TGCATGACCAGACCCCGC 62.409 66.667 0.00 0.00 0.00 6.13
358 359 1.976132 ATCTGCATGACCAGACCCCG 61.976 60.000 5.31 0.00 44.00 5.73
359 360 0.257039 AATCTGCATGACCAGACCCC 59.743 55.000 5.31 0.00 44.00 4.95
360 361 2.134789 AAATCTGCATGACCAGACCC 57.865 50.000 5.31 0.00 44.00 4.46
361 362 3.760684 AGAAAAATCTGCATGACCAGACC 59.239 43.478 5.31 0.00 44.00 3.85
362 363 4.380233 CCAGAAAAATCTGCATGACCAGAC 60.380 45.833 5.31 0.00 44.00 3.51
363 364 3.760151 CCAGAAAAATCTGCATGACCAGA 59.240 43.478 0.00 0.41 45.16 3.86
364 365 3.675228 GCCAGAAAAATCTGCATGACCAG 60.675 47.826 0.00 0.00 36.46 4.00
365 366 2.231964 GCCAGAAAAATCTGCATGACCA 59.768 45.455 0.00 0.00 36.46 4.02
366 367 2.417787 GGCCAGAAAAATCTGCATGACC 60.418 50.000 0.00 0.00 36.46 4.02
367 368 2.417787 GGGCCAGAAAAATCTGCATGAC 60.418 50.000 4.39 0.00 36.46 3.06
368 369 1.826720 GGGCCAGAAAAATCTGCATGA 59.173 47.619 4.39 0.00 36.46 3.07
369 370 1.829222 AGGGCCAGAAAAATCTGCATG 59.171 47.619 6.18 0.00 36.46 4.06
370 371 1.829222 CAGGGCCAGAAAAATCTGCAT 59.171 47.619 6.18 0.00 36.46 3.96
371 372 1.203038 TCAGGGCCAGAAAAATCTGCA 60.203 47.619 6.18 0.00 36.46 4.41
372 373 1.203287 GTCAGGGCCAGAAAAATCTGC 59.797 52.381 6.18 0.00 36.46 4.26
373 374 1.821136 GGTCAGGGCCAGAAAAATCTG 59.179 52.381 6.18 0.00 37.48 2.90
374 375 1.272704 GGGTCAGGGCCAGAAAAATCT 60.273 52.381 6.18 0.00 0.00 2.40
375 376 1.186200 GGGTCAGGGCCAGAAAAATC 58.814 55.000 6.18 0.00 0.00 2.17
376 377 0.611896 CGGGTCAGGGCCAGAAAAAT 60.612 55.000 6.18 0.00 0.00 1.82
377 378 1.228429 CGGGTCAGGGCCAGAAAAA 60.228 57.895 6.18 0.00 0.00 1.94
378 379 2.434331 CGGGTCAGGGCCAGAAAA 59.566 61.111 6.18 0.00 0.00 2.29
379 380 4.344865 GCGGGTCAGGGCCAGAAA 62.345 66.667 6.18 0.00 0.00 2.52
382 383 3.944250 AATTGCGGGTCAGGGCCAG 62.944 63.158 6.18 0.00 0.00 4.85
383 384 3.521765 AAATTGCGGGTCAGGGCCA 62.522 57.895 6.18 0.00 0.00 5.36
384 385 2.679996 AAATTGCGGGTCAGGGCC 60.680 61.111 0.00 0.00 0.00 5.80
385 386 2.573340 CAAATTGCGGGTCAGGGC 59.427 61.111 0.00 0.00 0.00 5.19
386 387 3.005540 GCCAAATTGCGGGTCAGGG 62.006 63.158 0.00 0.00 0.00 4.45
387 388 2.573340 GCCAAATTGCGGGTCAGG 59.427 61.111 0.00 0.00 0.00 3.86
395 396 2.473704 CGCAAAATAACCGCCAAATTGC 60.474 45.455 0.00 0.00 38.56 3.56
396 397 2.093467 CCGCAAAATAACCGCCAAATTG 59.907 45.455 0.00 0.00 0.00 2.32
397 398 2.342179 CCGCAAAATAACCGCCAAATT 58.658 42.857 0.00 0.00 0.00 1.82
398 399 1.404851 CCCGCAAAATAACCGCCAAAT 60.405 47.619 0.00 0.00 0.00 2.32
399 400 0.038159 CCCGCAAAATAACCGCCAAA 60.038 50.000 0.00 0.00 0.00 3.28
400 401 1.587054 CCCGCAAAATAACCGCCAA 59.413 52.632 0.00 0.00 0.00 4.52
401 402 2.995872 GCCCGCAAAATAACCGCCA 61.996 57.895 0.00 0.00 0.00 5.69
402 403 2.202690 GCCCGCAAAATAACCGCC 60.203 61.111 0.00 0.00 0.00 6.13
403 404 2.202690 GGCCCGCAAAATAACCGC 60.203 61.111 0.00 0.00 0.00 5.68
404 405 1.138671 CTGGCCCGCAAAATAACCG 59.861 57.895 0.00 0.00 0.00 4.44
405 406 1.515487 CCTGGCCCGCAAAATAACC 59.485 57.895 0.00 0.00 0.00 2.85
406 407 1.254975 ACCCTGGCCCGCAAAATAAC 61.255 55.000 0.00 0.00 0.00 1.89
407 408 1.077625 ACCCTGGCCCGCAAAATAA 59.922 52.632 0.00 0.00 0.00 1.40
408 409 1.680651 CACCCTGGCCCGCAAAATA 60.681 57.895 0.00 0.00 0.00 1.40
409 410 2.996734 CACCCTGGCCCGCAAAAT 60.997 61.111 0.00 0.00 0.00 1.82
410 411 4.531426 ACACCCTGGCCCGCAAAA 62.531 61.111 0.00 0.00 0.00 2.44
411 412 4.531426 AACACCCTGGCCCGCAAA 62.531 61.111 0.00 0.00 0.00 3.68
412 413 4.531426 AAACACCCTGGCCCGCAA 62.531 61.111 0.00 0.00 0.00 4.85
413 414 4.531426 AAAACACCCTGGCCCGCA 62.531 61.111 0.00 0.00 0.00 5.69
414 415 3.989787 CAAAACACCCTGGCCCGC 61.990 66.667 0.00 0.00 0.00 6.13
415 416 3.989787 GCAAAACACCCTGGCCCG 61.990 66.667 0.00 0.00 0.00 6.13
416 417 3.989787 CGCAAAACACCCTGGCCC 61.990 66.667 0.00 0.00 0.00 5.80
417 418 3.989787 CCGCAAAACACCCTGGCC 61.990 66.667 0.00 0.00 0.00 5.36
418 419 3.989787 CCCGCAAAACACCCTGGC 61.990 66.667 0.00 0.00 0.00 4.85
419 420 3.302344 CCCCGCAAAACACCCTGG 61.302 66.667 0.00 0.00 0.00 4.45
420 421 2.520741 ACCCCGCAAAACACCCTG 60.521 61.111 0.00 0.00 0.00 4.45
421 422 2.203437 GACCCCGCAAAACACCCT 60.203 61.111 0.00 0.00 0.00 4.34
422 423 2.203437 AGACCCCGCAAAACACCC 60.203 61.111 0.00 0.00 0.00 4.61
423 424 3.039134 CAGACCCCGCAAAACACC 58.961 61.111 0.00 0.00 0.00 4.16
424 425 0.887387 TAGCAGACCCCGCAAAACAC 60.887 55.000 0.00 0.00 0.00 3.32
425 426 0.605319 CTAGCAGACCCCGCAAAACA 60.605 55.000 0.00 0.00 0.00 2.83
426 427 0.321298 TCTAGCAGACCCCGCAAAAC 60.321 55.000 0.00 0.00 0.00 2.43
427 428 0.036388 CTCTAGCAGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
428 429 1.192146 ACTCTAGCAGACCCCGCAAA 61.192 55.000 0.00 0.00 0.00 3.68
429 430 1.192146 AACTCTAGCAGACCCCGCAA 61.192 55.000 0.00 0.00 0.00 4.85
430 431 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
431 432 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
432 433 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
433 434 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
434 435 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
435 436 3.697045 TCTAAGAGCAACTCTAGCAGACC 59.303 47.826 0.00 0.00 40.28 3.85
436 437 4.974368 TCTAAGAGCAACTCTAGCAGAC 57.026 45.455 0.00 0.00 40.28 3.51
437 438 5.767665 CCTATCTAAGAGCAACTCTAGCAGA 59.232 44.000 0.00 2.43 40.28 4.26
438 439 5.534654 ACCTATCTAAGAGCAACTCTAGCAG 59.465 44.000 0.00 0.00 40.28 4.24
439 440 5.300539 CACCTATCTAAGAGCAACTCTAGCA 59.699 44.000 0.00 0.00 40.28 3.49
440 441 5.768317 CACCTATCTAAGAGCAACTCTAGC 58.232 45.833 0.00 0.00 40.28 3.42
441 442 5.300539 TGCACCTATCTAAGAGCAACTCTAG 59.699 44.000 0.00 0.00 40.28 2.43
442 443 5.201243 TGCACCTATCTAAGAGCAACTCTA 58.799 41.667 0.00 0.00 40.28 2.43
443 444 4.026744 TGCACCTATCTAAGAGCAACTCT 58.973 43.478 0.00 0.00 43.37 3.24
444 445 4.392921 TGCACCTATCTAAGAGCAACTC 57.607 45.455 0.00 0.00 34.46 3.01
445 446 4.764172 CTTGCACCTATCTAAGAGCAACT 58.236 43.478 0.00 0.00 39.52 3.16
446 447 3.311048 GCTTGCACCTATCTAAGAGCAAC 59.689 47.826 0.00 0.00 39.52 4.17
447 448 3.535561 GCTTGCACCTATCTAAGAGCAA 58.464 45.455 0.00 0.00 41.02 3.91
448 449 2.158900 GGCTTGCACCTATCTAAGAGCA 60.159 50.000 2.50 0.00 35.23 4.26
449 450 2.488952 GGCTTGCACCTATCTAAGAGC 58.511 52.381 0.00 0.00 0.00 4.09
450 451 2.546795 CCGGCTTGCACCTATCTAAGAG 60.547 54.545 0.00 0.00 0.00 2.85
451 452 1.412710 CCGGCTTGCACCTATCTAAGA 59.587 52.381 0.00 0.00 0.00 2.10
452 453 1.412710 TCCGGCTTGCACCTATCTAAG 59.587 52.381 0.00 0.00 0.00 2.18
453 454 1.491668 TCCGGCTTGCACCTATCTAA 58.508 50.000 0.00 0.00 0.00 2.10
454 455 1.412710 CTTCCGGCTTGCACCTATCTA 59.587 52.381 0.00 0.00 0.00 1.98
455 456 0.179000 CTTCCGGCTTGCACCTATCT 59.821 55.000 0.00 0.00 0.00 1.98
456 457 0.107654 ACTTCCGGCTTGCACCTATC 60.108 55.000 0.00 0.00 0.00 2.08
457 458 0.328258 AACTTCCGGCTTGCACCTAT 59.672 50.000 0.00 0.00 0.00 2.57
458 459 0.109723 AAACTTCCGGCTTGCACCTA 59.890 50.000 0.00 0.00 0.00 3.08
459 460 0.755327 AAAACTTCCGGCTTGCACCT 60.755 50.000 0.00 0.00 0.00 4.00
460 461 0.104120 AAAAACTTCCGGCTTGCACC 59.896 50.000 0.00 0.00 0.00 5.01
461 462 3.659850 AAAAACTTCCGGCTTGCAC 57.340 47.368 0.00 0.00 0.00 4.57
484 485 2.158971 GCTTGCACCTTTCCCTCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
485 486 1.412343 GCTTGCACCTTTCCCTCAAAA 59.588 47.619 0.00 0.00 0.00 2.44
486 487 1.039856 GCTTGCACCTTTCCCTCAAA 58.960 50.000 0.00 0.00 0.00 2.69
487 488 0.827507 GGCTTGCACCTTTCCCTCAA 60.828 55.000 0.00 0.00 0.00 3.02
488 489 1.228552 GGCTTGCACCTTTCCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
489 490 2.335712 CGGCTTGCACCTTTCCCTC 61.336 63.158 0.00 0.00 0.00 4.30
490 491 2.282462 CGGCTTGCACCTTTCCCT 60.282 61.111 0.00 0.00 0.00 4.20
491 492 3.373565 CCGGCTTGCACCTTTCCC 61.374 66.667 0.00 0.00 0.00 3.97
492 493 2.282180 TCCGGCTTGCACCTTTCC 60.282 61.111 0.00 0.00 0.00 3.13
493 494 1.172812 AACTCCGGCTTGCACCTTTC 61.173 55.000 0.00 0.00 0.00 2.62
494 495 1.152756 AACTCCGGCTTGCACCTTT 60.153 52.632 0.00 0.00 0.00 3.11
495 496 1.898574 CAACTCCGGCTTGCACCTT 60.899 57.895 0.00 0.00 0.00 3.50
496 497 2.281761 CAACTCCGGCTTGCACCT 60.282 61.111 0.00 0.00 0.00 4.00
497 498 3.365265 CCAACTCCGGCTTGCACC 61.365 66.667 0.00 0.00 0.00 5.01
498 499 2.594592 ACCAACTCCGGCTTGCAC 60.595 61.111 0.00 0.00 0.00 4.57
499 500 2.594303 CACCAACTCCGGCTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
500 501 3.365265 CCACCAACTCCGGCTTGC 61.365 66.667 0.00 0.00 0.00 4.01
501 502 2.113139 ACCACCAACTCCGGCTTG 59.887 61.111 0.00 0.00 0.00 4.01
502 503 2.113139 CACCACCAACTCCGGCTT 59.887 61.111 0.00 0.00 0.00 4.35
503 504 4.643387 GCACCACCAACTCCGGCT 62.643 66.667 0.00 0.00 0.00 5.52
555 556 2.157834 AGTTGTAACGAATGTGGCGA 57.842 45.000 0.00 0.00 0.00 5.54
569 570 2.293399 GCGGTCCTGAAATGAAAGTTGT 59.707 45.455 0.00 0.00 0.00 3.32
624 625 2.282446 GGGACGAGGAGGGATGGA 59.718 66.667 0.00 0.00 0.00 3.41
626 627 1.075970 TGAGGGACGAGGAGGGATG 60.076 63.158 0.00 0.00 0.00 3.51
627 628 1.075896 GTGAGGGACGAGGAGGGAT 60.076 63.158 0.00 0.00 0.00 3.85
628 629 2.359404 GTGAGGGACGAGGAGGGA 59.641 66.667 0.00 0.00 0.00 4.20
629 630 2.760385 GGTGAGGGACGAGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
630 631 2.760385 GGGTGAGGGACGAGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
631 632 3.141488 CGGGTGAGGGACGAGGAG 61.141 72.222 0.00 0.00 0.00 3.69
654 655 2.277756 CGTACGTAGGCTCGTGGC 60.278 66.667 18.00 2.35 43.93 5.01
655 656 1.226211 CACGTACGTAGGCTCGTGG 60.226 63.158 22.34 0.96 46.12 4.94
656 657 4.354935 CACGTACGTAGGCTCGTG 57.645 61.111 22.34 18.13 45.10 4.35
657 658 1.790387 GTCACGTACGTAGGCTCGT 59.210 57.895 22.34 9.01 45.97 4.18
658 659 1.296432 CGTCACGTACGTAGGCTCG 60.296 63.158 22.34 16.10 46.72 5.03
659 660 4.659002 CGTCACGTACGTAGGCTC 57.341 61.111 22.34 8.71 46.72 4.70
688 689 4.100529 CAAGACGGAATCAAATCACATGC 58.899 43.478 0.00 0.00 0.00 4.06
689 690 4.439153 CCCAAGACGGAATCAAATCACATG 60.439 45.833 0.00 0.00 36.56 3.21
691 692 3.081061 CCCAAGACGGAATCAAATCACA 58.919 45.455 0.00 0.00 36.56 3.58
693 694 3.712016 TCCCAAGACGGAATCAAATCA 57.288 42.857 0.00 0.00 36.56 2.57
701 702 6.954232 AGTAGATAAAATTCCCAAGACGGAA 58.046 36.000 0.00 0.00 45.87 4.30
702 703 6.555463 AGTAGATAAAATTCCCAAGACGGA 57.445 37.500 0.00 0.00 36.56 4.69
704 705 5.050972 GCGAGTAGATAAAATTCCCAAGACG 60.051 44.000 0.00 0.00 0.00 4.18
706 707 5.130477 AGGCGAGTAGATAAAATTCCCAAGA 59.870 40.000 0.00 0.00 0.00 3.02
707 708 5.368989 AGGCGAGTAGATAAAATTCCCAAG 58.631 41.667 0.00 0.00 0.00 3.61
709 710 5.123227 CAAGGCGAGTAGATAAAATTCCCA 58.877 41.667 0.00 0.00 0.00 4.37
710 711 4.515567 CCAAGGCGAGTAGATAAAATTCCC 59.484 45.833 0.00 0.00 0.00 3.97
711 712 5.365619 TCCAAGGCGAGTAGATAAAATTCC 58.634 41.667 0.00 0.00 0.00 3.01
712 713 6.931840 AGATCCAAGGCGAGTAGATAAAATTC 59.068 38.462 0.00 0.00 0.00 2.17
714 715 6.268847 AGAGATCCAAGGCGAGTAGATAAAAT 59.731 38.462 0.00 0.00 0.00 1.82
716 717 5.141182 AGAGATCCAAGGCGAGTAGATAAA 58.859 41.667 0.00 0.00 0.00 1.40
719 720 3.237268 AGAGATCCAAGGCGAGTAGAT 57.763 47.619 0.00 0.00 0.00 1.98
720 721 2.738587 AGAGATCCAAGGCGAGTAGA 57.261 50.000 0.00 0.00 0.00 2.59
721 722 2.554893 GGTAGAGATCCAAGGCGAGTAG 59.445 54.545 0.00 0.00 0.00 2.57
722 723 2.092049 TGGTAGAGATCCAAGGCGAGTA 60.092 50.000 0.00 0.00 31.50 2.59
723 724 1.342076 TGGTAGAGATCCAAGGCGAGT 60.342 52.381 0.00 0.00 31.50 4.18
724 725 1.403814 TGGTAGAGATCCAAGGCGAG 58.596 55.000 0.00 0.00 31.50 5.03
725 726 2.088104 ATGGTAGAGATCCAAGGCGA 57.912 50.000 0.00 0.00 38.52 5.54
726 727 2.760374 GAATGGTAGAGATCCAAGGCG 58.240 52.381 0.00 0.00 38.52 5.52
727 728 2.760374 CGAATGGTAGAGATCCAAGGC 58.240 52.381 0.00 0.00 38.52 4.35
732 733 0.674534 ACCGCGAATGGTAGAGATCC 59.325 55.000 8.23 0.00 41.55 3.36
734 735 2.483188 GGAAACCGCGAATGGTAGAGAT 60.483 50.000 8.23 0.00 42.89 2.75
739 740 4.621832 GGGAAACCGCGAATGGTA 57.378 55.556 8.23 0.00 42.89 3.25
807 844 0.750182 CACCACCGGTTCAGTTGGTT 60.750 55.000 2.97 0.00 31.02 3.67
814 851 2.768769 TCACCCACCACCGGTTCA 60.769 61.111 2.97 0.00 31.02 3.18
958 1278 4.349930 GCCAGTGTATATAAAAGGGGAGGA 59.650 45.833 0.00 0.00 0.00 3.71
1040 1364 3.068691 CCCAACGCTCTCCTCCGA 61.069 66.667 0.00 0.00 0.00 4.55
1078 1402 3.664025 TTCGACAGCAGCCCCATCG 62.664 63.158 0.00 0.00 0.00 3.84
1323 1651 3.376859 TGAAAACACAAGCGTGACTGAAT 59.623 39.130 6.65 0.00 46.80 2.57
1336 1664 4.667262 CGAACAAAGGACATGAAAACACA 58.333 39.130 0.00 0.00 0.00 3.72
1360 1688 3.498834 TGCAGGCGCACGCTAATG 61.499 61.111 19.30 12.09 45.36 1.90
1400 1728 2.500504 CTGTAGAGGTAAACCCCAGACC 59.499 54.545 0.00 0.00 36.42 3.85
1401 1729 2.093606 GCTGTAGAGGTAAACCCCAGAC 60.094 54.545 8.90 0.00 36.42 3.51
1413 1747 1.908483 GGGGACTTGGCTGTAGAGG 59.092 63.158 0.00 0.00 0.00 3.69
1416 1750 2.584608 CCGGGGACTTGGCTGTAG 59.415 66.667 0.00 0.00 0.00 2.74
1432 1773 1.168714 AGGAATCGTTGCTTCAAGCC 58.831 50.000 7.01 0.00 41.51 4.35
1461 1802 1.806247 CGCGCATCTCCTACCAATCAA 60.806 52.381 8.75 0.00 0.00 2.57
1462 1803 0.249447 CGCGCATCTCCTACCAATCA 60.249 55.000 8.75 0.00 0.00 2.57
1463 1804 0.249489 ACGCGCATCTCCTACCAATC 60.249 55.000 5.73 0.00 0.00 2.67
1464 1805 0.249489 GACGCGCATCTCCTACCAAT 60.249 55.000 5.73 0.00 0.00 3.16
1465 1806 1.141019 GACGCGCATCTCCTACCAA 59.859 57.895 5.73 0.00 0.00 3.67
1466 1807 1.600511 TTGACGCGCATCTCCTACCA 61.601 55.000 5.73 0.00 0.00 3.25
1467 1808 1.141019 TTGACGCGCATCTCCTACC 59.859 57.895 5.73 0.00 0.00 3.18
1468 1809 1.146358 GGTTGACGCGCATCTCCTAC 61.146 60.000 5.73 0.00 0.00 3.18
1469 1810 1.141019 GGTTGACGCGCATCTCCTA 59.859 57.895 5.73 0.00 0.00 2.94
1488 1829 1.597461 CGGGGAAGGGAGACTTGAC 59.403 63.158 0.00 0.00 40.21 3.18
1568 1909 6.849697 AGAGTCTGTACAATAATTGGGGGATA 59.150 38.462 0.00 0.00 34.12 2.59
1588 1929 4.200874 TCCGGATGAAAGAGAGTAGAGTC 58.799 47.826 0.00 0.00 0.00 3.36
1589 1930 4.204012 CTCCGGATGAAAGAGAGTAGAGT 58.796 47.826 3.57 0.00 0.00 3.24
1628 1969 9.029243 CAAAATTAATGCTGTGGCGATTTATAA 57.971 29.630 0.00 0.00 42.25 0.98
1631 1972 5.809562 CCAAAATTAATGCTGTGGCGATTTA 59.190 36.000 0.00 0.00 42.25 1.40
1636 1977 2.667481 CACCAAAATTAATGCTGTGGCG 59.333 45.455 0.00 0.00 42.25 5.69
1690 2031 7.707648 TCTGAGATGAGATAGAGTCCCAATAT 58.292 38.462 0.00 0.00 0.00 1.28
1691 2032 7.096402 TCTGAGATGAGATAGAGTCCCAATA 57.904 40.000 0.00 0.00 0.00 1.90
1693 2034 5.394562 TCTGAGATGAGATAGAGTCCCAA 57.605 43.478 0.00 0.00 0.00 4.12
1694 2035 5.323581 CATCTGAGATGAGATAGAGTCCCA 58.676 45.833 17.28 0.00 31.14 4.37
1695 2036 4.706476 CCATCTGAGATGAGATAGAGTCCC 59.294 50.000 23.29 0.00 31.14 4.46
1696 2037 5.324409 ACCATCTGAGATGAGATAGAGTCC 58.676 45.833 23.29 0.00 31.14 3.85
1697 2038 6.899393 AACCATCTGAGATGAGATAGAGTC 57.101 41.667 23.29 0.00 31.14 3.36
1698 2039 6.947733 CCTAACCATCTGAGATGAGATAGAGT 59.052 42.308 23.29 8.08 31.14 3.24
1699 2040 6.127647 GCCTAACCATCTGAGATGAGATAGAG 60.128 46.154 23.29 14.55 31.14 2.43
1702 2043 5.649265 AGCCTAACCATCTGAGATGAGATA 58.351 41.667 23.29 11.60 31.14 1.98
1703 2044 4.491675 AGCCTAACCATCTGAGATGAGAT 58.508 43.478 23.29 11.10 32.59 2.75
1704 2045 3.894427 GAGCCTAACCATCTGAGATGAGA 59.106 47.826 23.29 7.28 0.00 3.27
1705 2046 3.006752 GGAGCCTAACCATCTGAGATGAG 59.993 52.174 23.29 15.10 0.00 2.90
1706 2047 2.968574 GGAGCCTAACCATCTGAGATGA 59.031 50.000 23.29 3.13 0.00 2.92
1707 2048 2.702478 TGGAGCCTAACCATCTGAGATG 59.298 50.000 15.38 15.38 32.03 2.90
1708 2049 3.051940 TGGAGCCTAACCATCTGAGAT 57.948 47.619 0.00 0.00 32.03 2.75
1709 2050 2.550277 TGGAGCCTAACCATCTGAGA 57.450 50.000 0.00 0.00 32.03 3.27
1710 2051 3.853355 ATTGGAGCCTAACCATCTGAG 57.147 47.619 0.00 0.00 37.26 3.35
1711 2052 3.523157 TCAATTGGAGCCTAACCATCTGA 59.477 43.478 5.42 0.00 37.26 3.27
1789 2144 3.702529 TGGCATGTGGCATCCGAGG 62.703 63.158 5.03 0.00 46.12 4.63
1812 2167 6.939730 TCATTTGTTCTACATGTAAAGCAGGA 59.060 34.615 7.06 0.00 32.48 3.86
1814 2169 7.535258 GTGTCATTTGTTCTACATGTAAAGCAG 59.465 37.037 7.06 0.00 0.00 4.24
1890 2245 2.600731 CTACTCCACGAAGACAGCAAG 58.399 52.381 0.00 0.00 0.00 4.01
1931 2286 7.209475 GCTTATCTCTTAGAGTGAGAGCAATT 58.791 38.462 9.25 0.00 42.85 2.32
1957 2312 9.387123 CGAATTAATAATAAGAAGGCTTGAAGC 57.613 33.333 9.04 9.04 41.46 3.86
1987 2342 9.964354 TGATAGTACTAGTTTACAGTTACTCCA 57.036 33.333 8.85 0.00 0.00 3.86
2000 2355 8.605325 ATGGTACTTTGGTGATAGTACTAGTT 57.395 34.615 8.85 0.00 43.87 2.24
2008 2363 7.645058 AAATTGGATGGTACTTTGGTGATAG 57.355 36.000 0.00 0.00 0.00 2.08
2009 2364 9.535170 TTAAAATTGGATGGTACTTTGGTGATA 57.465 29.630 0.00 0.00 0.00 2.15
2014 2369 9.500785 ACAAATTAAAATTGGATGGTACTTTGG 57.499 29.630 8.64 0.00 32.02 3.28
2124 2482 6.809689 TCGCAACGATCTCTAGTTCATTAAAA 59.190 34.615 0.00 0.00 0.00 1.52
2143 2501 1.250476 CTTGCTAAATGCGTCGCAAC 58.750 50.000 25.66 11.76 43.62 4.17
2172 2531 0.457509 AGTGAGACGATGCAGAAGCG 60.458 55.000 0.00 0.00 46.23 4.68
2208 2567 1.753073 CACTGATCATTTTGGCTCCCC 59.247 52.381 0.00 0.00 0.00 4.81
2241 2600 6.098838 ACCTCAATAGATAGAACACTGCATCA 59.901 38.462 0.00 0.00 0.00 3.07
2459 2825 1.598130 GTGTGTGAGTGGGTGAGCC 60.598 63.158 0.00 0.00 0.00 4.70
2460 2826 1.598130 GGTGTGTGAGTGGGTGAGC 60.598 63.158 0.00 0.00 0.00 4.26
2555 2922 9.726438 ATTAGTAGCAACTGAATAAGAAAGTGT 57.274 29.630 0.00 0.00 36.36 3.55
2939 3306 4.815269 AGTCCTCACAATTCTTCTCGAAG 58.185 43.478 0.22 0.22 39.71 3.79
2954 3321 2.289072 GCAGTAGAGTGCAAAGTCCTCA 60.289 50.000 4.43 0.00 43.41 3.86
2996 3363 0.324552 CCCCAATGCCTGGTTCATCA 60.325 55.000 0.00 0.00 44.76 3.07
3005 3372 4.431131 CCGCTCACCCCAATGCCT 62.431 66.667 0.00 0.00 0.00 4.75
3185 3552 2.405172 GACGACAAGTTCTCCACTTCC 58.595 52.381 0.00 0.00 44.60 3.46
3250 3617 4.630111 CTTCTTCACTTTGTCTGAGCTCT 58.370 43.478 16.19 0.00 0.00 4.09
3251 3618 3.186205 GCTTCTTCACTTTGTCTGAGCTC 59.814 47.826 6.82 6.82 0.00 4.09
3333 3700 1.950098 GACGAAGCGCAGACAAGCTC 61.950 60.000 11.47 0.00 43.78 4.09
3339 3706 3.524759 CGACGACGAAGCGCAGAC 61.525 66.667 11.47 0.00 42.66 3.51
3355 3722 2.184167 AGTTCCGCACCAACAACCG 61.184 57.895 0.00 0.00 0.00 4.44
3359 3726 1.821759 CCACAGTTCCGCACCAACA 60.822 57.895 0.00 0.00 0.00 3.33
3485 3855 2.675348 CCAGTTCGGAGAATTCTTGAGC 59.325 50.000 9.87 12.41 45.90 4.26
3488 3858 5.643777 ACATAACCAGTTCGGAGAATTCTTG 59.356 40.000 9.87 5.88 45.90 3.02
3574 3966 3.177249 GAACACGAGCCGCCGTAC 61.177 66.667 6.58 0.00 41.29 3.67
3575 3967 3.210223 TTGAACACGAGCCGCCGTA 62.210 57.895 6.58 0.00 41.29 4.02
3576 3968 4.595538 TTGAACACGAGCCGCCGT 62.596 61.111 0.00 1.62 44.43 5.68
3577 3969 3.777925 CTTGAACACGAGCCGCCG 61.778 66.667 0.00 0.44 0.00 6.46
3578 3970 3.423154 CCTTGAACACGAGCCGCC 61.423 66.667 0.00 0.00 0.00 6.13
3579 3971 2.665185 ACCTTGAACACGAGCCGC 60.665 61.111 0.00 0.00 0.00 6.53
3580 3972 1.157870 AACACCTTGAACACGAGCCG 61.158 55.000 0.00 0.00 0.00 5.52
3581 3973 1.021968 AAACACCTTGAACACGAGCC 58.978 50.000 0.00 0.00 0.00 4.70
3582 3974 2.450160 CAAAACACCTTGAACACGAGC 58.550 47.619 0.00 0.00 0.00 5.03
3583 3975 2.097466 AGCAAAACACCTTGAACACGAG 59.903 45.455 0.00 0.00 0.00 4.18
3584 3976 2.088423 AGCAAAACACCTTGAACACGA 58.912 42.857 0.00 0.00 0.00 4.35
3585 3977 2.097466 AGAGCAAAACACCTTGAACACG 59.903 45.455 0.00 0.00 0.00 4.49
3586 3978 3.119495 ACAGAGCAAAACACCTTGAACAC 60.119 43.478 0.00 0.00 0.00 3.32
3587 3979 3.088532 ACAGAGCAAAACACCTTGAACA 58.911 40.909 0.00 0.00 0.00 3.18
3588 3980 3.119495 ACACAGAGCAAAACACCTTGAAC 60.119 43.478 0.00 0.00 0.00 3.18
3589 3981 3.088532 ACACAGAGCAAAACACCTTGAA 58.911 40.909 0.00 0.00 0.00 2.69
3590 3982 2.722094 ACACAGAGCAAAACACCTTGA 58.278 42.857 0.00 0.00 0.00 3.02
3655 4084 2.028567 AGAGCTCAGAAGGAAAACCTCG 60.029 50.000 17.77 0.00 0.00 4.63
3678 4107 4.241681 GAGGAATTCGAGTCCATCATAGC 58.758 47.826 16.95 0.00 37.65 2.97
3710 4139 0.325272 GGGTGACTCAGGGAAGGAAC 59.675 60.000 0.00 0.00 0.00 3.62
3714 4144 1.352083 TCTTGGGTGACTCAGGGAAG 58.648 55.000 0.00 0.00 0.00 3.46
3715 4145 1.630369 CATCTTGGGTGACTCAGGGAA 59.370 52.381 0.00 0.00 0.00 3.97
3717 4147 0.254178 CCATCTTGGGTGACTCAGGG 59.746 60.000 0.00 0.00 32.67 4.45
3741 4171 4.555709 AACACGCCCTGCCGACAA 62.556 61.111 0.00 0.00 0.00 3.18
3770 4201 0.744874 CGCTGAATAGTCCTTCCCGA 59.255 55.000 0.00 0.00 0.00 5.14
3775 4206 6.979238 GTGATAAACTACGCTGAATAGTCCTT 59.021 38.462 0.00 0.00 31.51 3.36
3801 4232 1.289109 ACAAAAGACGTGCCGATCCG 61.289 55.000 0.00 0.00 0.00 4.18
3812 4243 3.683340 GTGGTAGAATCCGGACAAAAGAC 59.317 47.826 6.12 0.00 0.00 3.01
3850 4321 3.057104 TCATTCTTCCACATGCAGCAAAG 60.057 43.478 0.00 0.00 0.00 2.77
3853 4324 2.203470 TCATTCTTCCACATGCAGCA 57.797 45.000 0.00 0.00 0.00 4.41
3854 4325 2.751259 TCTTCATTCTTCCACATGCAGC 59.249 45.455 0.00 0.00 0.00 5.25
3900 4375 1.277580 AAGGGAGCAGGCATAGCAGT 61.278 55.000 0.00 0.00 0.00 4.40
3981 4457 9.358406 TGCCAGATCAATGATCAATAATAAAGT 57.642 29.630 23.41 0.00 41.12 2.66
3992 4468 2.548904 GTCAGCTGCCAGATCAATGATC 59.451 50.000 15.01 15.01 39.17 2.92
4019 4495 8.915871 TTGAAAACAAGAGAAAGAAATGACTG 57.084 30.769 0.00 0.00 0.00 3.51
4053 4529 1.274703 TTGAGATCCAGGGCAGGGAC 61.275 60.000 0.00 0.00 37.23 4.46
4126 6089 2.289002 GCAATGATACTCCGCTCCTTTG 59.711 50.000 0.00 0.00 0.00 2.77
4132 6095 1.069765 CGGGCAATGATACTCCGCT 59.930 57.895 0.00 0.00 34.17 5.52
4133 6096 1.961277 CCGGGCAATGATACTCCGC 60.961 63.158 0.00 0.00 39.41 5.54
4134 6097 0.600255 GTCCGGGCAATGATACTCCG 60.600 60.000 0.00 0.00 40.32 4.63
4135 6098 0.250338 GGTCCGGGCAATGATACTCC 60.250 60.000 9.07 0.00 0.00 3.85
4137 6100 0.180406 GTGGTCCGGGCAATGATACT 59.820 55.000 9.07 0.00 0.00 2.12
4238 6205 2.039084 GTCCAAGTCAACCAGATCCACT 59.961 50.000 0.00 0.00 0.00 4.00
4323 6319 4.650734 TGTTGCCTATGAACATCAACTGA 58.349 39.130 14.32 0.00 38.19 3.41
4347 6343 9.661187 GTGCTAGAATAATTCAATGATCTTGTG 57.339 33.333 0.00 0.00 0.00 3.33
4364 6389 8.422577 AAGTTTGGGAAAAATAGTGCTAGAAT 57.577 30.769 0.00 0.00 0.00 2.40
4426 6453 6.663944 AATTAAATGGTAGCTGAGACGTTC 57.336 37.500 0.00 0.00 0.00 3.95
4430 6457 5.007724 CGGGAAATTAAATGGTAGCTGAGAC 59.992 44.000 0.00 0.00 0.00 3.36
4434 6461 3.380004 TGCGGGAAATTAAATGGTAGCTG 59.620 43.478 0.00 0.00 0.00 4.24
4445 6472 2.680841 CCAAGATTCGTGCGGGAAATTA 59.319 45.455 0.00 0.00 0.00 1.40
4446 6473 1.472480 CCAAGATTCGTGCGGGAAATT 59.528 47.619 0.00 0.00 0.00 1.82
4450 6477 2.435938 GCCAAGATTCGTGCGGGA 60.436 61.111 0.00 0.00 0.00 5.14
4483 6510 2.222624 GAACGAATGAAAAGCGTGACG 58.777 47.619 0.00 0.00 38.39 4.35
4485 6512 2.128821 TCGAACGAATGAAAAGCGTGA 58.871 42.857 0.00 0.00 38.39 4.35
4487 6514 2.734606 TGATCGAACGAATGAAAAGCGT 59.265 40.909 0.12 0.00 40.35 5.07
4488 6515 3.060761 TCTGATCGAACGAATGAAAAGCG 59.939 43.478 0.12 0.00 0.00 4.68
4489 6516 4.584029 TCTGATCGAACGAATGAAAAGC 57.416 40.909 0.12 0.00 0.00 3.51
4490 6517 6.035435 ACAGATCTGATCGAACGAATGAAAAG 59.965 38.462 29.27 0.00 0.00 2.27
4497 6524 3.242446 CGAGACAGATCTGATCGAACGAA 60.242 47.826 32.51 0.00 41.84 3.85
4505 6532 0.383590 CGTGCCGAGACAGATCTGAT 59.616 55.000 29.27 16.53 34.34 2.90
4512 6539 2.811317 GCCTTCGTGCCGAGACAG 60.811 66.667 0.00 0.00 37.14 3.51
4513 6540 4.717629 CGCCTTCGTGCCGAGACA 62.718 66.667 0.00 0.00 37.14 3.41
4520 6547 1.132640 CTTTGTAGCGCCTTCGTGC 59.867 57.895 2.29 0.00 46.29 5.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.