Multiple sequence alignment - TraesCS5D01G320900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G320900 chr5D 100.000 2507 0 0 1 2507 413023315 413025821 0.000000e+00 4630
1 TraesCS5D01G320900 chr5D 92.472 797 59 1 1712 2507 421024576 421023780 0.000000e+00 1138
2 TraesCS5D01G320900 chr5D 92.579 795 56 3 1714 2507 484170301 484169509 0.000000e+00 1138
3 TraesCS5D01G320900 chrUn 97.814 1281 17 5 445 1714 221549128 221547848 0.000000e+00 2200
4 TraesCS5D01G320900 chrUn 97.268 1281 24 5 445 1714 186192126 186190846 0.000000e+00 2161
5 TraesCS5D01G320900 chrUn 99.363 157 1 0 292 448 415354024 415353868 4.080000e-73 285
6 TraesCS5D01G320900 chrUn 98.726 157 2 0 292 448 86478233 86478077 1.900000e-71 279
7 TraesCS5D01G320900 chrUn 98.726 157 2 0 292 448 186192121 186192277 1.900000e-71 279
8 TraesCS5D01G320900 chrUn 98.726 157 2 0 292 448 221549123 221549279 1.900000e-71 279
9 TraesCS5D01G320900 chr6D 97.506 1283 17 8 445 1714 458964239 458965519 0.000000e+00 2178
10 TraesCS5D01G320900 chr6D 91.865 799 59 6 1711 2507 304606954 304606160 0.000000e+00 1110
11 TraesCS5D01G320900 chr6D 94.502 291 16 0 1 291 406048005 406048295 1.370000e-122 449
12 TraesCS5D01G320900 chr6D 99.363 157 1 0 292 448 458964244 458964088 4.080000e-73 285
13 TraesCS5D01G320900 chr7A 97.418 1278 25 4 445 1714 120879739 120881016 0.000000e+00 2170
14 TraesCS5D01G320900 chr7A 95.189 291 14 0 1 291 286342161 286342451 6.320000e-126 460
15 TraesCS5D01G320900 chr7A 99.363 157 1 0 292 448 211291603 211291447 4.080000e-73 285
16 TraesCS5D01G320900 chr7B 97.348 1282 22 6 445 1714 743005352 743006633 0.000000e+00 2169
17 TraesCS5D01G320900 chr7B 95.309 1279 49 6 445 1714 247460338 247461614 0.000000e+00 2019
18 TraesCS5D01G320900 chr3A 96.732 1285 24 9 445 1714 51915448 51916729 0.000000e+00 2124
19 TraesCS5D01G320900 chr3A 95.139 288 14 0 1 288 228018819 228018532 2.940000e-124 455
20 TraesCS5D01G320900 chr6A 96.253 1281 36 7 445 1714 79142966 79144245 0.000000e+00 2089
21 TraesCS5D01G320900 chr6A 94.483 290 16 0 2 291 242055632 242055921 4.920000e-122 448
22 TraesCS5D01G320900 chr1B 95.301 1277 51 5 446 1714 499826479 499827754 0.000000e+00 2017
23 TraesCS5D01G320900 chr3D 93.099 797 52 3 1712 2507 491784040 491784834 0.000000e+00 1164
24 TraesCS5D01G320900 chr3D 91.593 797 64 3 1712 2507 176433869 176433075 0.000000e+00 1098
25 TraesCS5D01G320900 chr3D 91.583 796 66 1 1712 2506 293313427 293314222 0.000000e+00 1098
26 TraesCS5D01G320900 chr7D 91.950 795 61 3 1712 2505 415483259 415482467 0.000000e+00 1110
27 TraesCS5D01G320900 chr7D 91.798 317 21 5 2 316 150297353 150297666 1.060000e-118 436
28 TraesCS5D01G320900 chr7D 99.363 157 1 0 292 448 579029023 579028867 4.080000e-73 285
29 TraesCS5D01G320900 chr2D 91.844 797 62 3 1712 2507 527560172 527560966 0.000000e+00 1109
30 TraesCS5D01G320900 chr2D 94.521 292 14 2 1 291 408882519 408882809 1.370000e-122 449
31 TraesCS5D01G320900 chr2D 99.363 157 1 0 292 448 637318470 637318626 4.080000e-73 285
32 TraesCS5D01G320900 chr5A 91.593 797 65 2 1712 2507 418613847 418613052 0.000000e+00 1099
33 TraesCS5D01G320900 chr5A 92.163 319 20 5 1 316 473786905 473787221 1.770000e-121 446
34 TraesCS5D01G320900 chr2A 94.198 293 15 1 1 291 426931773 426932065 1.770000e-121 446
35 TraesCS5D01G320900 chr1D 94.178 292 15 2 1 291 399135474 399135764 6.360000e-121 444
36 TraesCS5D01G320900 chr1D 99.363 157 1 0 292 448 212468564 212468720 4.080000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G320900 chr5D 413023315 413025821 2506 False 4630 4630 100.000 1 2507 1 chr5D.!!$F1 2506
1 TraesCS5D01G320900 chr5D 421023780 421024576 796 True 1138 1138 92.472 1712 2507 1 chr5D.!!$R1 795
2 TraesCS5D01G320900 chr5D 484169509 484170301 792 True 1138 1138 92.579 1714 2507 1 chr5D.!!$R2 793
3 TraesCS5D01G320900 chrUn 221547848 221549128 1280 True 2200 2200 97.814 445 1714 1 chrUn.!!$R3 1269
4 TraesCS5D01G320900 chrUn 186190846 186192126 1280 True 2161 2161 97.268 445 1714 1 chrUn.!!$R2 1269
5 TraesCS5D01G320900 chr6D 458964239 458965519 1280 False 2178 2178 97.506 445 1714 1 chr6D.!!$F2 1269
6 TraesCS5D01G320900 chr6D 304606160 304606954 794 True 1110 1110 91.865 1711 2507 1 chr6D.!!$R1 796
7 TraesCS5D01G320900 chr7A 120879739 120881016 1277 False 2170 2170 97.418 445 1714 1 chr7A.!!$F1 1269
8 TraesCS5D01G320900 chr7B 743005352 743006633 1281 False 2169 2169 97.348 445 1714 1 chr7B.!!$F2 1269
9 TraesCS5D01G320900 chr7B 247460338 247461614 1276 False 2019 2019 95.309 445 1714 1 chr7B.!!$F1 1269
10 TraesCS5D01G320900 chr3A 51915448 51916729 1281 False 2124 2124 96.732 445 1714 1 chr3A.!!$F1 1269
11 TraesCS5D01G320900 chr6A 79142966 79144245 1279 False 2089 2089 96.253 445 1714 1 chr6A.!!$F1 1269
12 TraesCS5D01G320900 chr1B 499826479 499827754 1275 False 2017 2017 95.301 446 1714 1 chr1B.!!$F1 1268
13 TraesCS5D01G320900 chr3D 491784040 491784834 794 False 1164 1164 93.099 1712 2507 1 chr3D.!!$F2 795
14 TraesCS5D01G320900 chr3D 176433075 176433869 794 True 1098 1098 91.593 1712 2507 1 chr3D.!!$R1 795
15 TraesCS5D01G320900 chr3D 293313427 293314222 795 False 1098 1098 91.583 1712 2506 1 chr3D.!!$F1 794
16 TraesCS5D01G320900 chr7D 415482467 415483259 792 True 1110 1110 91.950 1712 2505 1 chr7D.!!$R1 793
17 TraesCS5D01G320900 chr2D 527560172 527560966 794 False 1109 1109 91.844 1712 2507 1 chr2D.!!$F2 795
18 TraesCS5D01G320900 chr5A 418613052 418613847 795 True 1099 1099 91.593 1712 2507 1 chr5A.!!$R1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.253044 GCATTAGTGGGCACTCCTCA 59.747 55.0 0.0 0.0 42.54 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1862 0.702316 AAAACCGGGTATCTTGGGCT 59.298 50.0 6.32 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.086733 GCATTAGTGGGCACTCCTC 57.913 57.895 0.00 0.00 42.54 3.71
19 20 0.253044 GCATTAGTGGGCACTCCTCA 59.747 55.000 0.00 0.00 42.54 3.86
20 21 2.014068 GCATTAGTGGGCACTCCTCAC 61.014 57.143 0.00 0.00 42.54 3.51
21 22 1.278985 CATTAGTGGGCACTCCTCACA 59.721 52.381 0.00 0.00 42.54 3.58
22 23 1.429930 TTAGTGGGCACTCCTCACAA 58.570 50.000 0.00 0.00 42.54 3.33
23 24 0.685097 TAGTGGGCACTCCTCACAAC 59.315 55.000 0.00 0.00 42.54 3.32
24 25 1.148273 GTGGGCACTCCTCACAACA 59.852 57.895 0.00 0.00 35.18 3.33
25 26 0.886490 GTGGGCACTCCTCACAACAG 60.886 60.000 0.00 0.00 35.18 3.16
26 27 1.344953 TGGGCACTCCTCACAACAGT 61.345 55.000 0.00 0.00 36.20 3.55
27 28 0.685097 GGGCACTCCTCACAACAGTA 59.315 55.000 0.00 0.00 0.00 2.74
28 29 1.608283 GGGCACTCCTCACAACAGTAC 60.608 57.143 0.00 0.00 0.00 2.73
29 30 1.419374 GCACTCCTCACAACAGTACG 58.581 55.000 0.00 0.00 0.00 3.67
30 31 1.935300 GCACTCCTCACAACAGTACGG 60.935 57.143 0.00 0.00 0.00 4.02
31 32 1.611977 CACTCCTCACAACAGTACGGA 59.388 52.381 0.00 0.00 0.00 4.69
32 33 2.231478 CACTCCTCACAACAGTACGGAT 59.769 50.000 0.00 0.00 0.00 4.18
33 34 3.442625 CACTCCTCACAACAGTACGGATA 59.557 47.826 0.00 0.00 0.00 2.59
34 35 4.082408 CACTCCTCACAACAGTACGGATAA 60.082 45.833 0.00 0.00 0.00 1.75
35 36 4.082354 ACTCCTCACAACAGTACGGATAAC 60.082 45.833 0.00 0.00 0.00 1.89
36 37 4.084287 TCCTCACAACAGTACGGATAACT 58.916 43.478 0.00 0.00 0.00 2.24
37 38 4.157289 TCCTCACAACAGTACGGATAACTC 59.843 45.833 0.00 0.00 0.00 3.01
38 39 4.082408 CCTCACAACAGTACGGATAACTCA 60.082 45.833 0.00 0.00 0.00 3.41
39 40 5.456548 TCACAACAGTACGGATAACTCAA 57.543 39.130 0.00 0.00 0.00 3.02
40 41 5.466819 TCACAACAGTACGGATAACTCAAG 58.533 41.667 0.00 0.00 0.00 3.02
41 42 5.010314 TCACAACAGTACGGATAACTCAAGT 59.990 40.000 0.00 0.00 0.00 3.16
42 43 5.345202 CACAACAGTACGGATAACTCAAGTC 59.655 44.000 0.00 0.00 0.00 3.01
43 44 5.243283 ACAACAGTACGGATAACTCAAGTCT 59.757 40.000 0.00 0.00 0.00 3.24
44 45 6.432162 ACAACAGTACGGATAACTCAAGTCTA 59.568 38.462 0.00 0.00 0.00 2.59
45 46 6.434018 ACAGTACGGATAACTCAAGTCTAC 57.566 41.667 0.00 0.00 0.00 2.59
46 47 5.942236 ACAGTACGGATAACTCAAGTCTACA 59.058 40.000 0.00 0.00 0.00 2.74
47 48 6.602406 ACAGTACGGATAACTCAAGTCTACAT 59.398 38.462 0.00 0.00 0.00 2.29
48 49 7.133513 CAGTACGGATAACTCAAGTCTACATC 58.866 42.308 0.00 0.00 0.00 3.06
49 50 6.827251 AGTACGGATAACTCAAGTCTACATCA 59.173 38.462 0.00 0.00 0.00 3.07
50 51 6.137794 ACGGATAACTCAAGTCTACATCAG 57.862 41.667 0.00 0.00 0.00 2.90
51 52 5.652891 ACGGATAACTCAAGTCTACATCAGT 59.347 40.000 0.00 0.00 0.00 3.41
52 53 6.827251 ACGGATAACTCAAGTCTACATCAGTA 59.173 38.462 0.00 0.00 0.00 2.74
53 54 7.133513 CGGATAACTCAAGTCTACATCAGTAC 58.866 42.308 0.00 0.00 0.00 2.73
54 55 7.201705 CGGATAACTCAAGTCTACATCAGTACA 60.202 40.741 0.00 0.00 0.00 2.90
55 56 8.467598 GGATAACTCAAGTCTACATCAGTACAA 58.532 37.037 0.00 0.00 0.00 2.41
56 57 9.856488 GATAACTCAAGTCTACATCAGTACAAA 57.144 33.333 0.00 0.00 0.00 2.83
59 60 8.764524 ACTCAAGTCTACATCAGTACAAATTC 57.235 34.615 0.00 0.00 0.00 2.17
60 61 7.819900 ACTCAAGTCTACATCAGTACAAATTCC 59.180 37.037 0.00 0.00 0.00 3.01
61 62 7.907389 TCAAGTCTACATCAGTACAAATTCCT 58.093 34.615 0.00 0.00 0.00 3.36
62 63 8.035394 TCAAGTCTACATCAGTACAAATTCCTC 58.965 37.037 0.00 0.00 0.00 3.71
63 64 7.482169 AGTCTACATCAGTACAAATTCCTCA 57.518 36.000 0.00 0.00 0.00 3.86
64 65 7.324178 AGTCTACATCAGTACAAATTCCTCAC 58.676 38.462 0.00 0.00 0.00 3.51
65 66 7.039011 AGTCTACATCAGTACAAATTCCTCACA 60.039 37.037 0.00 0.00 0.00 3.58
66 67 7.276658 GTCTACATCAGTACAAATTCCTCACAG 59.723 40.741 0.00 0.00 0.00 3.66
67 68 4.697352 ACATCAGTACAAATTCCTCACAGC 59.303 41.667 0.00 0.00 0.00 4.40
68 69 4.623932 TCAGTACAAATTCCTCACAGCT 57.376 40.909 0.00 0.00 0.00 4.24
69 70 4.318332 TCAGTACAAATTCCTCACAGCTG 58.682 43.478 13.48 13.48 0.00 4.24
70 71 4.067896 CAGTACAAATTCCTCACAGCTGT 58.932 43.478 15.25 15.25 0.00 4.40
71 72 5.011635 TCAGTACAAATTCCTCACAGCTGTA 59.988 40.000 21.20 3.40 0.00 2.74
72 73 5.700832 CAGTACAAATTCCTCACAGCTGTAA 59.299 40.000 21.20 10.88 0.00 2.41
73 74 6.372659 CAGTACAAATTCCTCACAGCTGTAAT 59.627 38.462 21.20 12.89 0.00 1.89
74 75 5.633830 ACAAATTCCTCACAGCTGTAATG 57.366 39.130 21.20 12.12 0.00 1.90
75 76 5.316167 ACAAATTCCTCACAGCTGTAATGA 58.684 37.500 21.20 12.21 0.00 2.57
76 77 5.948162 ACAAATTCCTCACAGCTGTAATGAT 59.052 36.000 21.20 7.51 0.00 2.45
77 78 6.094603 ACAAATTCCTCACAGCTGTAATGATC 59.905 38.462 21.20 0.00 0.00 2.92
78 79 4.824479 TTCCTCACAGCTGTAATGATCA 57.176 40.909 21.20 0.00 0.00 2.92
79 80 4.824479 TCCTCACAGCTGTAATGATCAA 57.176 40.909 21.20 0.00 0.00 2.57
80 81 4.763073 TCCTCACAGCTGTAATGATCAAG 58.237 43.478 21.20 3.67 0.00 3.02
81 82 4.223700 TCCTCACAGCTGTAATGATCAAGT 59.776 41.667 21.20 0.00 0.00 3.16
82 83 4.569966 CCTCACAGCTGTAATGATCAAGTC 59.430 45.833 21.20 0.00 0.00 3.01
83 84 5.151297 TCACAGCTGTAATGATCAAGTCA 57.849 39.130 21.20 0.00 42.06 3.41
84 85 5.173664 TCACAGCTGTAATGATCAAGTCAG 58.826 41.667 21.20 9.47 40.92 3.51
85 86 3.937706 ACAGCTGTAATGATCAAGTCAGC 59.062 43.478 26.89 26.89 45.48 4.26
86 87 3.937079 CAGCTGTAATGATCAAGTCAGCA 59.063 43.478 31.24 14.46 46.87 4.41
87 88 4.034163 CAGCTGTAATGATCAAGTCAGCAG 59.966 45.833 31.24 25.29 46.87 4.24
88 89 3.242673 GCTGTAATGATCAAGTCAGCAGC 60.243 47.826 28.09 22.45 45.05 5.25
89 90 3.937079 CTGTAATGATCAAGTCAGCAGCA 59.063 43.478 0.00 0.00 40.92 4.41
90 91 4.325972 TGTAATGATCAAGTCAGCAGCAA 58.674 39.130 0.00 0.00 40.92 3.91
91 92 4.393990 TGTAATGATCAAGTCAGCAGCAAG 59.606 41.667 0.00 0.00 40.92 4.01
92 93 1.162698 TGATCAAGTCAGCAGCAAGC 58.837 50.000 0.00 0.00 46.19 4.01
101 102 2.960170 GCAGCAAGCCAAGTCAGG 59.040 61.111 0.00 0.00 37.23 3.86
102 103 1.900498 GCAGCAAGCCAAGTCAGGT 60.900 57.895 0.00 0.00 37.23 4.00
103 104 0.606401 GCAGCAAGCCAAGTCAGGTA 60.606 55.000 0.00 0.00 37.23 3.08
104 105 1.160137 CAGCAAGCCAAGTCAGGTAC 58.840 55.000 0.00 0.00 0.00 3.34
105 106 0.764890 AGCAAGCCAAGTCAGGTACA 59.235 50.000 0.00 0.00 0.00 2.90
106 107 1.142870 AGCAAGCCAAGTCAGGTACAA 59.857 47.619 0.00 0.00 0.00 2.41
107 108 1.537202 GCAAGCCAAGTCAGGTACAAG 59.463 52.381 0.00 0.00 0.00 3.16
108 109 2.810400 GCAAGCCAAGTCAGGTACAAGA 60.810 50.000 0.00 0.00 0.00 3.02
109 110 3.679389 CAAGCCAAGTCAGGTACAAGAT 58.321 45.455 0.00 0.00 0.00 2.40
110 111 3.618690 AGCCAAGTCAGGTACAAGATC 57.381 47.619 0.00 0.00 0.00 2.75
111 112 2.906389 AGCCAAGTCAGGTACAAGATCA 59.094 45.455 0.00 0.00 0.00 2.92
112 113 3.327757 AGCCAAGTCAGGTACAAGATCAA 59.672 43.478 0.00 0.00 0.00 2.57
113 114 3.437049 GCCAAGTCAGGTACAAGATCAAC 59.563 47.826 0.00 0.00 0.00 3.18
114 115 3.679980 CCAAGTCAGGTACAAGATCAACG 59.320 47.826 0.00 0.00 0.00 4.10
115 116 4.556233 CAAGTCAGGTACAAGATCAACGA 58.444 43.478 0.00 0.00 0.00 3.85
116 117 5.171476 CAAGTCAGGTACAAGATCAACGAT 58.829 41.667 0.00 0.00 0.00 3.73
117 118 6.330278 CAAGTCAGGTACAAGATCAACGATA 58.670 40.000 0.00 0.00 0.00 2.92
118 119 6.716934 AGTCAGGTACAAGATCAACGATAT 57.283 37.500 0.00 0.00 0.00 1.63
119 120 7.818997 AGTCAGGTACAAGATCAACGATATA 57.181 36.000 0.00 0.00 0.00 0.86
120 121 8.410673 AGTCAGGTACAAGATCAACGATATAT 57.589 34.615 0.00 0.00 0.00 0.86
121 122 8.861086 AGTCAGGTACAAGATCAACGATATATT 58.139 33.333 0.00 0.00 0.00 1.28
122 123 9.477484 GTCAGGTACAAGATCAACGATATATTT 57.523 33.333 0.00 0.00 0.00 1.40
129 130 9.599866 ACAAGATCAACGATATATTTTCAGTCA 57.400 29.630 0.00 0.00 0.00 3.41
133 134 9.869844 GATCAACGATATATTTTCAGTCAAAGG 57.130 33.333 0.00 0.00 0.00 3.11
134 135 8.786826 TCAACGATATATTTTCAGTCAAAGGT 57.213 30.769 0.00 0.00 0.00 3.50
135 136 9.878667 TCAACGATATATTTTCAGTCAAAGGTA 57.121 29.630 0.00 0.00 0.00 3.08
138 139 9.273016 ACGATATATTTTCAGTCAAAGGTATGG 57.727 33.333 0.00 0.00 0.00 2.74
139 140 9.489084 CGATATATTTTCAGTCAAAGGTATGGA 57.511 33.333 0.00 0.00 0.00 3.41
143 144 9.872684 ATATTTTCAGTCAAAGGTATGGATCAT 57.127 29.630 0.00 0.00 0.00 2.45
145 146 9.872684 ATTTTCAGTCAAAGGTATGGATCATAT 57.127 29.630 0.00 0.00 0.00 1.78
147 148 9.778741 TTTCAGTCAAAGGTATGGATCATATAC 57.221 33.333 9.64 9.64 0.00 1.47
148 149 8.491045 TCAGTCAAAGGTATGGATCATATACA 57.509 34.615 16.50 0.00 33.66 2.29
149 150 8.933653 TCAGTCAAAGGTATGGATCATATACAA 58.066 33.333 16.50 0.72 33.66 2.41
150 151 9.559732 CAGTCAAAGGTATGGATCATATACAAA 57.440 33.333 16.50 0.96 33.66 2.83
158 159 9.423061 GGTATGGATCATATACAAAATTTTGGC 57.577 33.333 29.37 11.38 42.34 4.52
161 162 8.303780 TGGATCATATACAAAATTTTGGCTCA 57.696 30.769 29.37 14.95 42.34 4.26
162 163 8.415553 TGGATCATATACAAAATTTTGGCTCAG 58.584 33.333 29.37 17.97 42.34 3.35
163 164 7.383300 GGATCATATACAAAATTTTGGCTCAGC 59.617 37.037 29.37 13.67 42.34 4.26
164 165 7.167924 TCATATACAAAATTTTGGCTCAGCA 57.832 32.000 29.37 11.40 42.34 4.41
165 166 7.609960 TCATATACAAAATTTTGGCTCAGCAA 58.390 30.769 29.37 10.38 42.34 3.91
166 167 8.259411 TCATATACAAAATTTTGGCTCAGCAAT 58.741 29.630 29.37 11.71 42.34 3.56
167 168 6.730960 ATACAAAATTTTGGCTCAGCAATG 57.269 33.333 29.37 6.26 42.34 2.82
168 169 3.251487 ACAAAATTTTGGCTCAGCAATGC 59.749 39.130 29.37 0.00 42.34 3.56
169 170 2.843401 AATTTTGGCTCAGCAATGCA 57.157 40.000 8.35 0.00 0.00 3.96
170 171 3.343941 AATTTTGGCTCAGCAATGCAT 57.656 38.095 8.35 0.00 0.00 3.96
171 172 2.087501 TTTTGGCTCAGCAATGCATG 57.912 45.000 8.35 3.10 0.00 4.06
172 173 1.258676 TTTGGCTCAGCAATGCATGA 58.741 45.000 8.35 7.55 0.00 3.07
173 174 1.480789 TTGGCTCAGCAATGCATGAT 58.519 45.000 8.35 0.00 0.00 2.45
174 175 0.744281 TGGCTCAGCAATGCATGATG 59.256 50.000 8.35 3.93 46.86 3.07
175 176 0.597637 GGCTCAGCAATGCATGATGC 60.598 55.000 14.31 14.31 45.11 3.91
185 186 5.915857 GCAATGCATGATGCTTGAAATATG 58.084 37.500 23.87 12.45 45.31 1.78
186 187 5.465390 GCAATGCATGATGCTTGAAATATGT 59.535 36.000 23.87 0.41 45.31 2.29
187 188 6.018262 GCAATGCATGATGCTTGAAATATGTT 60.018 34.615 23.87 0.00 45.31 2.71
188 189 7.170151 GCAATGCATGATGCTTGAAATATGTTA 59.830 33.333 23.87 1.70 45.31 2.41
189 190 9.203421 CAATGCATGATGCTTGAAATATGTTAT 57.797 29.630 19.19 0.00 45.31 1.89
190 191 8.981724 ATGCATGATGCTTGAAATATGTTATC 57.018 30.769 19.19 0.00 45.31 1.75
191 192 7.942990 TGCATGATGCTTGAAATATGTTATCA 58.057 30.769 19.19 0.00 45.31 2.15
192 193 8.581578 TGCATGATGCTTGAAATATGTTATCAT 58.418 29.630 19.19 0.00 45.31 2.45
193 194 9.073368 GCATGATGCTTGAAATATGTTATCATC 57.927 33.333 10.72 0.00 40.96 2.92
194 195 9.569167 CATGATGCTTGAAATATGTTATCATCC 57.431 33.333 0.00 0.00 33.22 3.51
195 196 8.694581 TGATGCTTGAAATATGTTATCATCCA 57.305 30.769 0.00 0.00 35.70 3.41
196 197 9.134055 TGATGCTTGAAATATGTTATCATCCAA 57.866 29.630 0.00 0.00 35.70 3.53
197 198 9.970395 GATGCTTGAAATATGTTATCATCCAAA 57.030 29.630 0.00 0.00 35.70 3.28
209 210 8.592529 TGTTATCATCCAAAATGAATTCAGGA 57.407 30.769 14.54 14.54 0.00 3.86
210 211 9.204337 TGTTATCATCCAAAATGAATTCAGGAT 57.796 29.630 17.17 17.17 35.20 3.24
211 212 9.472361 GTTATCATCCAAAATGAATTCAGGATG 57.528 33.333 30.69 30.69 44.24 3.51
212 213 7.670605 ATCATCCAAAATGAATTCAGGATGT 57.329 32.000 32.62 24.07 43.81 3.06
213 214 6.869695 TCATCCAAAATGAATTCAGGATGTG 58.130 36.000 32.62 21.50 43.81 3.21
214 215 6.664384 TCATCCAAAATGAATTCAGGATGTGA 59.336 34.615 32.62 22.77 43.81 3.58
215 216 7.343574 TCATCCAAAATGAATTCAGGATGTGAT 59.656 33.333 32.62 21.76 43.81 3.06
216 217 8.635328 CATCCAAAATGAATTCAGGATGTGATA 58.365 33.333 29.38 12.54 41.39 2.15
217 218 8.771521 TCCAAAATGAATTCAGGATGTGATAT 57.228 30.769 14.54 0.00 37.40 1.63
218 219 8.635328 TCCAAAATGAATTCAGGATGTGATATG 58.365 33.333 14.54 1.77 37.40 1.78
219 220 7.384115 CCAAAATGAATTCAGGATGTGATATGC 59.616 37.037 14.54 0.00 37.40 3.14
220 221 7.834881 AAATGAATTCAGGATGTGATATGCT 57.165 32.000 14.54 0.00 37.40 3.79
221 222 7.450124 AATGAATTCAGGATGTGATATGCTC 57.550 36.000 14.54 0.00 37.40 4.26
222 223 5.932455 TGAATTCAGGATGTGATATGCTCA 58.068 37.500 3.38 0.00 37.40 4.26
223 224 6.358991 TGAATTCAGGATGTGATATGCTCAA 58.641 36.000 3.38 0.00 35.07 3.02
224 225 6.485648 TGAATTCAGGATGTGATATGCTCAAG 59.514 38.462 3.38 0.00 35.07 3.02
225 226 4.347360 TCAGGATGTGATATGCTCAAGG 57.653 45.455 0.00 0.00 35.07 3.61
226 227 3.969312 TCAGGATGTGATATGCTCAAGGA 59.031 43.478 0.00 0.00 35.07 3.36
227 228 4.409901 TCAGGATGTGATATGCTCAAGGAA 59.590 41.667 0.00 0.00 35.07 3.36
228 229 4.755629 CAGGATGTGATATGCTCAAGGAAG 59.244 45.833 0.00 0.00 35.07 3.46
229 230 4.657504 AGGATGTGATATGCTCAAGGAAGA 59.342 41.667 0.00 0.00 35.07 2.87
230 231 4.754114 GGATGTGATATGCTCAAGGAAGAC 59.246 45.833 0.00 0.00 35.07 3.01
231 232 4.824479 TGTGATATGCTCAAGGAAGACA 57.176 40.909 0.00 0.00 35.07 3.41
232 233 4.763073 TGTGATATGCTCAAGGAAGACAG 58.237 43.478 0.00 0.00 35.07 3.51
233 234 4.223700 TGTGATATGCTCAAGGAAGACAGT 59.776 41.667 0.00 0.00 35.07 3.55
234 235 4.808364 GTGATATGCTCAAGGAAGACAGTC 59.192 45.833 0.00 0.00 35.07 3.51
235 236 4.467438 TGATATGCTCAAGGAAGACAGTCA 59.533 41.667 2.66 0.00 0.00 3.41
236 237 3.777106 ATGCTCAAGGAAGACAGTCAA 57.223 42.857 2.66 0.00 0.00 3.18
237 238 3.558931 TGCTCAAGGAAGACAGTCAAA 57.441 42.857 2.66 0.00 0.00 2.69
238 239 3.206150 TGCTCAAGGAAGACAGTCAAAC 58.794 45.455 2.66 0.00 0.00 2.93
239 240 3.206150 GCTCAAGGAAGACAGTCAAACA 58.794 45.455 2.66 0.00 0.00 2.83
240 241 3.627577 GCTCAAGGAAGACAGTCAAACAA 59.372 43.478 2.66 0.00 0.00 2.83
241 242 4.096382 GCTCAAGGAAGACAGTCAAACAAA 59.904 41.667 2.66 0.00 0.00 2.83
242 243 5.221126 GCTCAAGGAAGACAGTCAAACAAAT 60.221 40.000 2.66 0.00 0.00 2.32
243 244 6.681368 GCTCAAGGAAGACAGTCAAACAAATT 60.681 38.462 2.66 0.00 0.00 1.82
244 245 7.169158 TCAAGGAAGACAGTCAAACAAATTT 57.831 32.000 2.66 0.00 0.00 1.82
245 246 7.610865 TCAAGGAAGACAGTCAAACAAATTTT 58.389 30.769 2.66 0.00 0.00 1.82
246 247 7.759433 TCAAGGAAGACAGTCAAACAAATTTTC 59.241 33.333 2.66 0.00 0.00 2.29
247 248 7.410120 AGGAAGACAGTCAAACAAATTTTCT 57.590 32.000 2.66 0.00 0.00 2.52
248 249 7.484140 AGGAAGACAGTCAAACAAATTTTCTC 58.516 34.615 2.66 0.00 0.00 2.87
249 250 7.122650 AGGAAGACAGTCAAACAAATTTTCTCA 59.877 33.333 2.66 0.00 0.00 3.27
250 251 7.922811 GGAAGACAGTCAAACAAATTTTCTCAT 59.077 33.333 2.66 0.00 0.00 2.90
251 252 8.638685 AAGACAGTCAAACAAATTTTCTCATG 57.361 30.769 2.66 0.00 0.00 3.07
252 253 6.698766 AGACAGTCAAACAAATTTTCTCATGC 59.301 34.615 2.66 0.00 0.00 4.06
253 254 6.339730 ACAGTCAAACAAATTTTCTCATGCA 58.660 32.000 0.00 0.00 0.00 3.96
254 255 6.817641 ACAGTCAAACAAATTTTCTCATGCAA 59.182 30.769 0.00 0.00 0.00 4.08
255 256 7.333921 ACAGTCAAACAAATTTTCTCATGCAAA 59.666 29.630 0.00 0.00 0.00 3.68
256 257 8.339714 CAGTCAAACAAATTTTCTCATGCAAAT 58.660 29.630 0.00 0.00 0.00 2.32
257 258 9.545105 AGTCAAACAAATTTTCTCATGCAAATA 57.455 25.926 0.00 0.00 0.00 1.40
263 264 8.662141 ACAAATTTTCTCATGCAAATAATCAGC 58.338 29.630 0.00 0.00 0.00 4.26
264 265 7.781548 AATTTTCTCATGCAAATAATCAGCC 57.218 32.000 0.00 0.00 0.00 4.85
265 266 5.918426 TTTCTCATGCAAATAATCAGCCA 57.082 34.783 0.00 0.00 0.00 4.75
266 267 4.906065 TCTCATGCAAATAATCAGCCAC 57.094 40.909 0.00 0.00 0.00 5.01
267 268 3.633525 TCTCATGCAAATAATCAGCCACC 59.366 43.478 0.00 0.00 0.00 4.61
268 269 2.358582 TCATGCAAATAATCAGCCACCG 59.641 45.455 0.00 0.00 0.00 4.94
269 270 2.121291 TGCAAATAATCAGCCACCGA 57.879 45.000 0.00 0.00 0.00 4.69
270 271 2.441410 TGCAAATAATCAGCCACCGAA 58.559 42.857 0.00 0.00 0.00 4.30
271 272 3.023119 TGCAAATAATCAGCCACCGAAT 58.977 40.909 0.00 0.00 0.00 3.34
272 273 4.203226 TGCAAATAATCAGCCACCGAATA 58.797 39.130 0.00 0.00 0.00 1.75
273 274 4.826733 TGCAAATAATCAGCCACCGAATAT 59.173 37.500 0.00 0.00 0.00 1.28
274 275 5.301551 TGCAAATAATCAGCCACCGAATATT 59.698 36.000 0.00 0.00 0.00 1.28
275 276 6.488344 TGCAAATAATCAGCCACCGAATATTA 59.512 34.615 0.00 0.00 0.00 0.98
276 277 7.176515 TGCAAATAATCAGCCACCGAATATTAT 59.823 33.333 0.00 0.00 0.00 1.28
277 278 7.485913 GCAAATAATCAGCCACCGAATATTATG 59.514 37.037 0.00 0.00 0.00 1.90
278 279 7.630242 AATAATCAGCCACCGAATATTATGG 57.370 36.000 8.04 8.04 35.17 2.74
279 280 3.417069 TCAGCCACCGAATATTATGGG 57.583 47.619 12.52 6.58 32.49 4.00
280 281 2.708861 TCAGCCACCGAATATTATGGGT 59.291 45.455 10.37 10.37 43.61 4.51
282 283 2.441750 AGCCACCGAATATTATGGGTGT 59.558 45.455 21.86 9.51 46.64 4.16
283 284 2.552315 GCCACCGAATATTATGGGTGTG 59.448 50.000 21.86 16.76 46.64 3.82
284 285 3.815809 CCACCGAATATTATGGGTGTGT 58.184 45.455 21.86 0.00 46.64 3.72
285 286 3.563808 CCACCGAATATTATGGGTGTGTG 59.436 47.826 21.86 10.35 46.64 3.82
286 287 4.196193 CACCGAATATTATGGGTGTGTGT 58.804 43.478 18.16 0.00 43.82 3.72
287 288 4.035091 CACCGAATATTATGGGTGTGTGTG 59.965 45.833 18.16 2.30 43.82 3.82
288 289 4.196193 CCGAATATTATGGGTGTGTGTGT 58.804 43.478 0.00 0.00 0.00 3.72
289 290 5.104859 ACCGAATATTATGGGTGTGTGTGTA 60.105 40.000 10.18 0.00 0.00 2.90
290 291 5.465390 CCGAATATTATGGGTGTGTGTGTAG 59.535 44.000 0.00 0.00 0.00 2.74
291 292 5.465390 CGAATATTATGGGTGTGTGTGTAGG 59.535 44.000 0.00 0.00 0.00 3.18
292 293 6.569127 AATATTATGGGTGTGTGTGTAGGA 57.431 37.500 0.00 0.00 0.00 2.94
293 294 6.763715 ATATTATGGGTGTGTGTGTAGGAT 57.236 37.500 0.00 0.00 0.00 3.24
294 295 4.481368 TTATGGGTGTGTGTGTAGGATC 57.519 45.455 0.00 0.00 0.00 3.36
295 296 2.024176 TGGGTGTGTGTGTAGGATCT 57.976 50.000 0.00 0.00 0.00 2.75
296 297 1.899814 TGGGTGTGTGTGTAGGATCTC 59.100 52.381 0.00 0.00 0.00 2.75
297 298 1.135083 GGGTGTGTGTGTAGGATCTCG 60.135 57.143 0.00 0.00 0.00 4.04
298 299 1.816835 GGTGTGTGTGTAGGATCTCGA 59.183 52.381 0.00 0.00 0.00 4.04
299 300 2.427453 GGTGTGTGTGTAGGATCTCGAT 59.573 50.000 0.00 0.00 0.00 3.59
300 301 3.489398 GGTGTGTGTGTAGGATCTCGATC 60.489 52.174 0.00 0.00 37.11 3.69
301 302 3.128764 GTGTGTGTGTAGGATCTCGATCA 59.871 47.826 8.97 0.00 39.54 2.92
302 303 3.128764 TGTGTGTGTAGGATCTCGATCAC 59.871 47.826 8.97 0.82 39.54 3.06
303 304 2.688446 TGTGTGTAGGATCTCGATCACC 59.312 50.000 8.97 0.00 39.54 4.02
304 305 2.688446 GTGTGTAGGATCTCGATCACCA 59.312 50.000 8.97 0.11 39.54 4.17
305 306 3.319405 GTGTGTAGGATCTCGATCACCAT 59.681 47.826 8.97 0.00 39.54 3.55
306 307 3.960755 TGTGTAGGATCTCGATCACCATT 59.039 43.478 8.97 0.00 39.54 3.16
307 308 4.038042 TGTGTAGGATCTCGATCACCATTC 59.962 45.833 8.97 0.00 39.54 2.67
308 309 4.279671 GTGTAGGATCTCGATCACCATTCT 59.720 45.833 8.97 0.00 39.54 2.40
309 310 5.473846 GTGTAGGATCTCGATCACCATTCTA 59.526 44.000 8.97 0.00 39.54 2.10
310 311 6.151985 GTGTAGGATCTCGATCACCATTCTAT 59.848 42.308 8.97 0.00 39.54 1.98
311 312 5.657826 AGGATCTCGATCACCATTCTATG 57.342 43.478 8.97 0.00 39.54 2.23
312 313 4.465660 AGGATCTCGATCACCATTCTATGG 59.534 45.833 8.97 4.18 43.90 2.74
325 326 6.506500 CCATTCTATGGTATTTCTGGATGC 57.493 41.667 0.00 0.00 45.54 3.91
326 327 6.243900 CCATTCTATGGTATTTCTGGATGCT 58.756 40.000 0.00 0.00 45.54 3.79
327 328 6.718454 CCATTCTATGGTATTTCTGGATGCTT 59.282 38.462 0.00 0.00 45.54 3.91
328 329 7.232127 CCATTCTATGGTATTTCTGGATGCTTT 59.768 37.037 0.00 0.00 45.54 3.51
329 330 8.636213 CATTCTATGGTATTTCTGGATGCTTTT 58.364 33.333 0.00 0.00 0.00 2.27
330 331 7.572523 TCTATGGTATTTCTGGATGCTTTTG 57.427 36.000 0.00 0.00 0.00 2.44
331 332 7.345691 TCTATGGTATTTCTGGATGCTTTTGA 58.654 34.615 0.00 0.00 0.00 2.69
332 333 5.902613 TGGTATTTCTGGATGCTTTTGAG 57.097 39.130 0.00 0.00 0.00 3.02
333 334 5.569355 TGGTATTTCTGGATGCTTTTGAGA 58.431 37.500 0.00 0.00 0.00 3.27
334 335 6.009589 TGGTATTTCTGGATGCTTTTGAGAA 58.990 36.000 0.00 0.00 0.00 2.87
335 336 6.151648 TGGTATTTCTGGATGCTTTTGAGAAG 59.848 38.462 0.00 0.00 0.00 2.85
336 337 4.510038 TTTCTGGATGCTTTTGAGAAGC 57.490 40.909 0.11 0.11 43.29 3.86
337 338 3.430042 TCTGGATGCTTTTGAGAAGCT 57.570 42.857 9.20 0.00 43.38 3.74
338 339 3.759581 TCTGGATGCTTTTGAGAAGCTT 58.240 40.909 9.20 0.00 43.38 3.74
339 340 4.147321 TCTGGATGCTTTTGAGAAGCTTT 58.853 39.130 9.20 0.00 43.38 3.51
340 341 4.586001 TCTGGATGCTTTTGAGAAGCTTTT 59.414 37.500 9.20 0.00 43.38 2.27
341 342 4.874970 TGGATGCTTTTGAGAAGCTTTTC 58.125 39.130 10.00 10.00 43.38 2.29
342 343 4.240888 GGATGCTTTTGAGAAGCTTTTCC 58.759 43.478 13.97 8.70 43.38 3.13
343 344 4.021632 GGATGCTTTTGAGAAGCTTTTCCT 60.022 41.667 13.97 0.00 43.38 3.36
344 345 5.510349 GGATGCTTTTGAGAAGCTTTTCCTT 60.510 40.000 13.97 0.00 43.38 3.36
345 346 5.343307 TGCTTTTGAGAAGCTTTTCCTTT 57.657 34.783 13.97 0.00 43.38 3.11
346 347 5.733676 TGCTTTTGAGAAGCTTTTCCTTTT 58.266 33.333 13.97 0.00 43.38 2.27
347 348 6.872920 TGCTTTTGAGAAGCTTTTCCTTTTA 58.127 32.000 13.97 0.00 43.38 1.52
348 349 6.756542 TGCTTTTGAGAAGCTTTTCCTTTTAC 59.243 34.615 13.97 1.29 43.38 2.01
349 350 6.201044 GCTTTTGAGAAGCTTTTCCTTTTACC 59.799 38.462 13.97 0.00 40.01 2.85
350 351 7.418337 TTTTGAGAAGCTTTTCCTTTTACCT 57.582 32.000 13.97 0.00 0.00 3.08
351 352 8.528044 TTTTGAGAAGCTTTTCCTTTTACCTA 57.472 30.769 13.97 0.00 0.00 3.08
352 353 8.528044 TTTGAGAAGCTTTTCCTTTTACCTAA 57.472 30.769 13.97 0.00 0.00 2.69
353 354 8.706322 TTGAGAAGCTTTTCCTTTTACCTAAT 57.294 30.769 13.97 0.00 0.00 1.73
354 355 8.110860 TGAGAAGCTTTTCCTTTTACCTAATG 57.889 34.615 13.97 0.00 0.00 1.90
355 356 6.925211 AGAAGCTTTTCCTTTTACCTAATGC 58.075 36.000 0.00 0.00 0.00 3.56
356 357 5.661056 AGCTTTTCCTTTTACCTAATGCC 57.339 39.130 0.00 0.00 0.00 4.40
357 358 4.157840 AGCTTTTCCTTTTACCTAATGCCG 59.842 41.667 0.00 0.00 0.00 5.69
358 359 4.676986 GCTTTTCCTTTTACCTAATGCCGG 60.677 45.833 0.00 0.00 0.00 6.13
359 360 2.047002 TCCTTTTACCTAATGCCGGC 57.953 50.000 22.73 22.73 0.00 6.13
360 361 1.562475 TCCTTTTACCTAATGCCGGCT 59.438 47.619 29.70 11.31 0.00 5.52
361 362 2.773087 TCCTTTTACCTAATGCCGGCTA 59.227 45.455 29.70 14.84 0.00 3.93
362 363 2.876550 CCTTTTACCTAATGCCGGCTAC 59.123 50.000 29.70 0.00 0.00 3.58
363 364 2.625695 TTTACCTAATGCCGGCTACC 57.374 50.000 29.70 0.00 0.00 3.18
377 378 3.308438 GGCTACCGACAACTTACTTCA 57.692 47.619 0.00 0.00 0.00 3.02
378 379 3.858247 GGCTACCGACAACTTACTTCAT 58.142 45.455 0.00 0.00 0.00 2.57
379 380 3.617263 GGCTACCGACAACTTACTTCATG 59.383 47.826 0.00 0.00 0.00 3.07
380 381 3.062234 GCTACCGACAACTTACTTCATGC 59.938 47.826 0.00 0.00 0.00 4.06
381 382 3.402628 ACCGACAACTTACTTCATGCT 57.597 42.857 0.00 0.00 0.00 3.79
382 383 4.530710 ACCGACAACTTACTTCATGCTA 57.469 40.909 0.00 0.00 0.00 3.49
383 384 5.086104 ACCGACAACTTACTTCATGCTAT 57.914 39.130 0.00 0.00 0.00 2.97
384 385 5.488341 ACCGACAACTTACTTCATGCTATT 58.512 37.500 0.00 0.00 0.00 1.73
385 386 6.636705 ACCGACAACTTACTTCATGCTATTA 58.363 36.000 0.00 0.00 0.00 0.98
386 387 6.534079 ACCGACAACTTACTTCATGCTATTAC 59.466 38.462 0.00 0.00 0.00 1.89
387 388 6.757010 CCGACAACTTACTTCATGCTATTACT 59.243 38.462 0.00 0.00 0.00 2.24
388 389 7.919091 CCGACAACTTACTTCATGCTATTACTA 59.081 37.037 0.00 0.00 0.00 1.82
389 390 9.297586 CGACAACTTACTTCATGCTATTACTAA 57.702 33.333 0.00 0.00 0.00 2.24
391 392 9.938280 ACAACTTACTTCATGCTATTACTAACA 57.062 29.630 0.00 0.00 0.00 2.41
401 402 9.750125 TCATGCTATTACTAACACTTATGACTG 57.250 33.333 0.00 0.00 0.00 3.51
402 403 9.750125 CATGCTATTACTAACACTTATGACTGA 57.250 33.333 0.00 0.00 0.00 3.41
403 404 9.973450 ATGCTATTACTAACACTTATGACTGAG 57.027 33.333 0.00 0.00 0.00 3.35
404 405 7.921214 TGCTATTACTAACACTTATGACTGAGC 59.079 37.037 0.00 0.00 0.00 4.26
405 406 7.382759 GCTATTACTAACACTTATGACTGAGCC 59.617 40.741 0.00 0.00 0.00 4.70
406 407 4.111375 ACTAACACTTATGACTGAGCCG 57.889 45.455 0.00 0.00 0.00 5.52
407 408 1.726853 AACACTTATGACTGAGCCGC 58.273 50.000 0.00 0.00 0.00 6.53
408 409 0.608130 ACACTTATGACTGAGCCGCA 59.392 50.000 0.00 0.00 0.00 5.69
409 410 1.002366 CACTTATGACTGAGCCGCAC 58.998 55.000 0.00 0.00 0.00 5.34
410 411 0.898320 ACTTATGACTGAGCCGCACT 59.102 50.000 0.00 0.00 0.00 4.40
411 412 1.276421 ACTTATGACTGAGCCGCACTT 59.724 47.619 0.00 0.00 0.00 3.16
412 413 1.662629 CTTATGACTGAGCCGCACTTG 59.337 52.381 0.00 0.00 0.00 3.16
413 414 0.740868 TATGACTGAGCCGCACTTGC 60.741 55.000 0.00 0.00 37.78 4.01
414 415 2.358003 GACTGAGCCGCACTTGCT 60.358 61.111 0.00 0.00 43.03 3.91
415 416 1.963338 GACTGAGCCGCACTTGCTT 60.963 57.895 0.00 0.00 39.69 3.91
416 417 1.510480 GACTGAGCCGCACTTGCTTT 61.510 55.000 0.00 0.00 39.69 3.51
417 418 1.208614 CTGAGCCGCACTTGCTTTC 59.791 57.895 0.00 0.00 39.69 2.62
418 419 2.192608 CTGAGCCGCACTTGCTTTCC 62.193 60.000 0.00 0.00 39.69 3.13
419 420 2.203337 AGCCGCACTTGCTTTCCA 60.203 55.556 0.00 0.00 34.87 3.53
420 421 1.795170 GAGCCGCACTTGCTTTCCAA 61.795 55.000 0.00 0.00 39.69 3.53
421 422 1.067250 GCCGCACTTGCTTTCCAAA 59.933 52.632 0.00 0.00 39.32 3.28
422 423 0.529555 GCCGCACTTGCTTTCCAAAA 60.530 50.000 0.00 0.00 39.32 2.44
423 424 1.490621 CCGCACTTGCTTTCCAAAAG 58.509 50.000 0.00 0.00 39.32 2.27
424 425 1.066908 CCGCACTTGCTTTCCAAAAGA 59.933 47.619 3.68 0.00 39.32 2.52
425 426 2.481104 CCGCACTTGCTTTCCAAAAGAA 60.481 45.455 3.68 0.00 39.32 2.52
426 427 3.186119 CGCACTTGCTTTCCAAAAGAAA 58.814 40.909 3.68 0.00 42.28 2.52
427 428 3.803778 CGCACTTGCTTTCCAAAAGAAAT 59.196 39.130 3.68 0.00 43.50 2.17
428 429 4.270808 CGCACTTGCTTTCCAAAAGAAATT 59.729 37.500 3.68 0.00 43.50 1.82
429 430 5.504392 GCACTTGCTTTCCAAAAGAAATTG 58.496 37.500 3.68 5.17 43.50 2.32
430 431 5.294060 GCACTTGCTTTCCAAAAGAAATTGA 59.706 36.000 12.29 0.00 43.50 2.57
431 432 6.183360 GCACTTGCTTTCCAAAAGAAATTGAA 60.183 34.615 12.29 0.00 43.50 2.69
432 433 7.626028 GCACTTGCTTTCCAAAAGAAATTGAAA 60.626 33.333 12.29 0.00 43.50 2.69
433 434 7.693536 CACTTGCTTTCCAAAAGAAATTGAAAC 59.306 33.333 3.68 0.00 43.50 2.78
434 435 7.607607 ACTTGCTTTCCAAAAGAAATTGAAACT 59.392 29.630 3.68 0.00 43.50 2.66
435 436 9.097257 CTTGCTTTCCAAAAGAAATTGAAACTA 57.903 29.630 3.68 0.00 43.50 2.24
436 437 9.612066 TTGCTTTCCAAAAGAAATTGAAACTAT 57.388 25.926 3.68 0.00 43.50 2.12
437 438 9.260002 TGCTTTCCAAAAGAAATTGAAACTATC 57.740 29.630 3.68 0.00 43.50 2.08
438 439 9.260002 GCTTTCCAAAAGAAATTGAAACTATCA 57.740 29.630 3.68 0.00 43.50 2.15
441 442 8.761575 TCCAAAAGAAATTGAAACTATCATGC 57.238 30.769 0.00 0.00 38.03 4.06
442 443 7.818930 TCCAAAAGAAATTGAAACTATCATGCC 59.181 33.333 0.00 0.00 38.03 4.40
443 444 7.820872 CCAAAAGAAATTGAAACTATCATGCCT 59.179 33.333 0.00 0.00 38.03 4.75
516 517 2.507886 TCAAGTCACCAAGAAGTTCCCA 59.492 45.455 0.00 0.00 0.00 4.37
662 666 3.176924 TCTTGGCTCTTCTCCACTAGT 57.823 47.619 0.00 0.00 32.45 2.57
1032 1044 3.229293 TGTCATTCAGGAATTTGTGGCA 58.771 40.909 0.00 0.00 0.00 4.92
1089 1101 1.207089 CCCTACTTGGTCGATGAAGCA 59.793 52.381 6.35 0.00 0.00 3.91
1135 1147 4.627058 TCACGCAACTGATTCTTTCACTA 58.373 39.130 0.00 0.00 0.00 2.74
1173 1185 2.702478 TCAAGATCTGCGGGAGAATGAT 59.298 45.455 2.54 0.00 33.12 2.45
1744 1769 8.327941 TGCATATTAGTATGAAGCTTTGGATC 57.672 34.615 9.28 0.00 40.12 3.36
1778 1803 3.927142 GTCTTCTTCCACACGTTATCAGG 59.073 47.826 0.00 0.00 0.00 3.86
1837 1862 6.377712 TCAGCATGATATGTGAACAATTTCCA 59.622 34.615 0.00 0.00 42.56 3.53
1839 1864 5.461078 GCATGATATGTGAACAATTTCCAGC 59.539 40.000 0.00 0.00 0.00 4.85
1854 1879 1.607612 CAGCCCAAGATACCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
1881 1906 5.046878 TCTCAGCAAGATACCTCGGTAAAAA 60.047 40.000 0.00 0.00 33.99 1.94
1901 1926 6.885735 AAAACTTTTGACAGACGAAAATGG 57.114 33.333 0.00 0.00 32.28 3.16
1986 2012 5.769662 AGCACAATAATCAGACCAAGTTTCA 59.230 36.000 0.00 0.00 0.00 2.69
2021 2047 3.453717 AGAGCCTTCTTCTGCATGATACA 59.546 43.478 0.00 0.00 0.00 2.29
2196 2224 4.935885 AGAATCAGACTCGCAACATTTC 57.064 40.909 0.00 0.00 0.00 2.17
2232 2260 1.162698 CAGTCAGGGCATGTGTCTTG 58.837 55.000 0.00 0.00 0.00 3.02
2235 2263 1.267806 GTCAGGGCATGTGTCTTGTTG 59.732 52.381 0.00 0.00 0.00 3.33
2244 2272 4.913924 GCATGTGTCTTGTTGAAGAATCAC 59.086 41.667 0.00 0.00 40.00 3.06
2259 2287 0.516877 ATCACGTGTTTGGTCGCATG 59.483 50.000 16.51 0.00 0.00 4.06
2296 2324 0.818445 GAGCATGCATCCCCAGTCAG 60.818 60.000 21.98 0.00 0.00 3.51
2305 2333 3.072184 GCATCCCCAGTCAGATTAGTCAT 59.928 47.826 0.00 0.00 0.00 3.06
2332 2360 1.153086 GATGCGGCAAGGATCCAGT 60.153 57.895 15.82 0.00 41.23 4.00
2382 2410 0.034059 AACCTCACGAGTCAGGCAAG 59.966 55.000 0.00 0.00 32.32 4.01
2395 2423 3.448660 GTCAGGCAAGGGAAAATAAGCAT 59.551 43.478 0.00 0.00 0.00 3.79
2436 2464 5.350504 ACAAGAATCGACAAGATCTGGAT 57.649 39.130 3.42 0.00 38.98 3.41
2440 2468 6.035368 AGAATCGACAAGATCTGGATATGG 57.965 41.667 3.42 0.00 38.98 2.74
2447 2475 4.350225 ACAAGATCTGGATATGGCATCACT 59.650 41.667 1.65 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.253044 TGAGGAGTGCCCACTAATGC 59.747 55.000 0.12 0.00 42.66 3.56
1 2 1.278985 TGTGAGGAGTGCCCACTAATG 59.721 52.381 0.12 0.00 42.66 1.90
2 3 1.656587 TGTGAGGAGTGCCCACTAAT 58.343 50.000 0.12 0.00 42.66 1.73
4 5 0.685097 GTTGTGAGGAGTGCCCACTA 59.315 55.000 0.12 0.00 42.66 2.74
5 6 1.344953 TGTTGTGAGGAGTGCCCACT 61.345 55.000 0.00 0.00 45.84 4.00
6 7 0.886490 CTGTTGTGAGGAGTGCCCAC 60.886 60.000 0.00 0.00 37.41 4.61
7 8 1.344953 ACTGTTGTGAGGAGTGCCCA 61.345 55.000 0.00 0.00 37.41 5.36
8 9 0.685097 TACTGTTGTGAGGAGTGCCC 59.315 55.000 0.00 0.00 33.31 5.36
9 10 1.797025 GTACTGTTGTGAGGAGTGCC 58.203 55.000 0.00 0.00 0.00 5.01
10 11 1.419374 CGTACTGTTGTGAGGAGTGC 58.581 55.000 0.00 0.00 0.00 4.40
11 12 1.611977 TCCGTACTGTTGTGAGGAGTG 59.388 52.381 0.00 0.00 32.29 3.51
12 13 1.991121 TCCGTACTGTTGTGAGGAGT 58.009 50.000 0.00 0.00 32.29 3.85
13 14 4.158025 AGTTATCCGTACTGTTGTGAGGAG 59.842 45.833 0.00 0.00 36.83 3.69
14 15 4.084287 AGTTATCCGTACTGTTGTGAGGA 58.916 43.478 0.00 0.00 37.43 3.71
15 16 4.082408 TGAGTTATCCGTACTGTTGTGAGG 60.082 45.833 0.00 0.00 0.00 3.86
16 17 5.055642 TGAGTTATCCGTACTGTTGTGAG 57.944 43.478 0.00 0.00 0.00 3.51
17 18 5.010314 ACTTGAGTTATCCGTACTGTTGTGA 59.990 40.000 0.00 0.00 0.00 3.58
18 19 5.227908 ACTTGAGTTATCCGTACTGTTGTG 58.772 41.667 0.00 0.00 0.00 3.33
19 20 5.243283 AGACTTGAGTTATCCGTACTGTTGT 59.757 40.000 0.00 0.00 0.00 3.32
20 21 5.710984 AGACTTGAGTTATCCGTACTGTTG 58.289 41.667 0.00 0.00 0.00 3.33
21 22 5.979288 AGACTTGAGTTATCCGTACTGTT 57.021 39.130 0.00 0.00 0.00 3.16
22 23 5.942236 TGTAGACTTGAGTTATCCGTACTGT 59.058 40.000 0.00 0.00 0.00 3.55
23 24 6.432607 TGTAGACTTGAGTTATCCGTACTG 57.567 41.667 0.00 0.00 0.00 2.74
24 25 6.827251 TGATGTAGACTTGAGTTATCCGTACT 59.173 38.462 0.00 0.00 0.00 2.73
25 26 7.024340 TGATGTAGACTTGAGTTATCCGTAC 57.976 40.000 0.00 0.00 0.00 3.67
26 27 6.827251 ACTGATGTAGACTTGAGTTATCCGTA 59.173 38.462 0.00 0.00 0.00 4.02
27 28 5.652891 ACTGATGTAGACTTGAGTTATCCGT 59.347 40.000 0.00 0.00 0.00 4.69
28 29 6.137794 ACTGATGTAGACTTGAGTTATCCG 57.862 41.667 0.00 0.00 0.00 4.18
29 30 7.997482 TGTACTGATGTAGACTTGAGTTATCC 58.003 38.462 0.00 0.00 0.00 2.59
30 31 9.856488 TTTGTACTGATGTAGACTTGAGTTATC 57.144 33.333 0.00 0.00 0.00 1.75
33 34 9.209175 GAATTTGTACTGATGTAGACTTGAGTT 57.791 33.333 0.00 0.00 0.00 3.01
34 35 7.819900 GGAATTTGTACTGATGTAGACTTGAGT 59.180 37.037 0.00 0.00 0.00 3.41
35 36 8.037758 AGGAATTTGTACTGATGTAGACTTGAG 58.962 37.037 0.00 0.00 0.00 3.02
36 37 7.907389 AGGAATTTGTACTGATGTAGACTTGA 58.093 34.615 0.00 0.00 0.00 3.02
37 38 7.819415 TGAGGAATTTGTACTGATGTAGACTTG 59.181 37.037 0.00 0.00 0.00 3.16
38 39 7.819900 GTGAGGAATTTGTACTGATGTAGACTT 59.180 37.037 0.00 0.00 0.00 3.01
39 40 7.039011 TGTGAGGAATTTGTACTGATGTAGACT 60.039 37.037 0.00 0.00 0.00 3.24
40 41 7.097192 TGTGAGGAATTTGTACTGATGTAGAC 58.903 38.462 0.00 0.00 0.00 2.59
41 42 7.239763 TGTGAGGAATTTGTACTGATGTAGA 57.760 36.000 0.00 0.00 0.00 2.59
42 43 6.036517 GCTGTGAGGAATTTGTACTGATGTAG 59.963 42.308 0.00 0.00 0.00 2.74
43 44 5.874810 GCTGTGAGGAATTTGTACTGATGTA 59.125 40.000 0.00 0.00 0.00 2.29
44 45 4.697352 GCTGTGAGGAATTTGTACTGATGT 59.303 41.667 0.00 0.00 0.00 3.06
45 46 4.940046 AGCTGTGAGGAATTTGTACTGATG 59.060 41.667 0.00 0.00 0.00 3.07
46 47 4.940046 CAGCTGTGAGGAATTTGTACTGAT 59.060 41.667 5.25 0.00 0.00 2.90
47 48 4.202357 ACAGCTGTGAGGAATTTGTACTGA 60.202 41.667 20.97 0.00 0.00 3.41
48 49 4.067896 ACAGCTGTGAGGAATTTGTACTG 58.932 43.478 20.97 0.00 0.00 2.74
49 50 4.357918 ACAGCTGTGAGGAATTTGTACT 57.642 40.909 20.97 0.00 0.00 2.73
50 51 6.371548 TCATTACAGCTGTGAGGAATTTGTAC 59.628 38.462 29.57 0.00 0.00 2.90
51 52 6.472016 TCATTACAGCTGTGAGGAATTTGTA 58.528 36.000 29.57 1.97 0.00 2.41
52 53 5.316167 TCATTACAGCTGTGAGGAATTTGT 58.684 37.500 29.57 0.00 0.00 2.83
53 54 5.885230 TCATTACAGCTGTGAGGAATTTG 57.115 39.130 29.57 14.65 0.00 2.32
54 55 6.182627 TGATCATTACAGCTGTGAGGAATTT 58.817 36.000 26.51 12.97 28.65 1.82
55 56 5.748402 TGATCATTACAGCTGTGAGGAATT 58.252 37.500 26.51 13.65 28.65 2.17
56 57 5.363562 TGATCATTACAGCTGTGAGGAAT 57.636 39.130 26.51 16.75 28.65 3.01
57 58 4.824479 TGATCATTACAGCTGTGAGGAA 57.176 40.909 26.51 15.23 28.65 3.36
58 59 4.223700 ACTTGATCATTACAGCTGTGAGGA 59.776 41.667 29.57 27.26 0.00 3.71
59 60 4.511527 ACTTGATCATTACAGCTGTGAGG 58.488 43.478 29.57 22.76 0.00 3.86
60 61 5.173664 TGACTTGATCATTACAGCTGTGAG 58.826 41.667 29.57 17.72 29.99 3.51
61 62 5.151297 TGACTTGATCATTACAGCTGTGA 57.849 39.130 29.57 22.22 29.99 3.58
62 63 4.201792 GCTGACTTGATCATTACAGCTGTG 60.202 45.833 29.57 13.08 44.51 3.66
63 64 3.937706 GCTGACTTGATCATTACAGCTGT 59.062 43.478 25.12 25.12 44.51 4.40
64 65 3.937079 TGCTGACTTGATCATTACAGCTG 59.063 43.478 29.88 13.48 46.87 4.24
65 66 4.190001 CTGCTGACTTGATCATTACAGCT 58.810 43.478 29.88 7.90 46.87 4.24
66 67 3.242673 GCTGCTGACTTGATCATTACAGC 60.243 47.826 26.70 26.70 44.54 4.40
67 68 3.937079 TGCTGCTGACTTGATCATTACAG 59.063 43.478 14.82 14.82 36.48 2.74
68 69 3.941573 TGCTGCTGACTTGATCATTACA 58.058 40.909 0.00 0.00 36.48 2.41
69 70 4.730035 GCTTGCTGCTGACTTGATCATTAC 60.730 45.833 0.00 0.00 36.48 1.89
70 71 3.376234 GCTTGCTGCTGACTTGATCATTA 59.624 43.478 0.00 0.00 36.48 1.90
71 72 2.163815 GCTTGCTGCTGACTTGATCATT 59.836 45.455 0.00 0.00 36.48 2.57
72 73 1.743958 GCTTGCTGCTGACTTGATCAT 59.256 47.619 0.00 0.00 36.48 2.45
73 74 1.162698 GCTTGCTGCTGACTTGATCA 58.837 50.000 0.00 0.00 38.95 2.92
74 75 0.450983 GGCTTGCTGCTGACTTGATC 59.549 55.000 0.00 0.00 42.39 2.92
75 76 0.251033 TGGCTTGCTGCTGACTTGAT 60.251 50.000 0.00 0.00 42.39 2.57
76 77 0.466007 TTGGCTTGCTGCTGACTTGA 60.466 50.000 0.00 0.00 42.39 3.02
77 78 0.039437 CTTGGCTTGCTGCTGACTTG 60.039 55.000 0.00 0.00 42.39 3.16
78 79 0.466922 ACTTGGCTTGCTGCTGACTT 60.467 50.000 0.00 0.00 42.39 3.01
79 80 0.888285 GACTTGGCTTGCTGCTGACT 60.888 55.000 0.00 0.00 42.39 3.41
80 81 1.168407 TGACTTGGCTTGCTGCTGAC 61.168 55.000 0.00 0.00 42.39 3.51
81 82 0.887836 CTGACTTGGCTTGCTGCTGA 60.888 55.000 0.00 0.00 42.39 4.26
82 83 1.579932 CTGACTTGGCTTGCTGCTG 59.420 57.895 0.00 0.00 42.39 4.41
83 84 1.602888 CCTGACTTGGCTTGCTGCT 60.603 57.895 0.00 0.00 42.39 4.24
84 85 0.606401 TACCTGACTTGGCTTGCTGC 60.606 55.000 0.00 0.00 41.94 5.25
85 86 1.160137 GTACCTGACTTGGCTTGCTG 58.840 55.000 0.00 0.00 0.00 4.41
86 87 0.764890 TGTACCTGACTTGGCTTGCT 59.235 50.000 0.00 0.00 0.00 3.91
87 88 1.537202 CTTGTACCTGACTTGGCTTGC 59.463 52.381 0.00 0.00 0.00 4.01
88 89 3.126001 TCTTGTACCTGACTTGGCTTG 57.874 47.619 0.00 0.00 0.00 4.01
89 90 3.327757 TGATCTTGTACCTGACTTGGCTT 59.672 43.478 0.00 0.00 0.00 4.35
90 91 2.906389 TGATCTTGTACCTGACTTGGCT 59.094 45.455 0.00 0.00 0.00 4.75
91 92 3.334583 TGATCTTGTACCTGACTTGGC 57.665 47.619 0.00 0.00 0.00 4.52
92 93 3.679980 CGTTGATCTTGTACCTGACTTGG 59.320 47.826 0.00 0.00 0.00 3.61
93 94 4.556233 TCGTTGATCTTGTACCTGACTTG 58.444 43.478 0.00 0.00 0.00 3.16
94 95 4.866508 TCGTTGATCTTGTACCTGACTT 57.133 40.909 0.00 0.00 0.00 3.01
95 96 6.716934 ATATCGTTGATCTTGTACCTGACT 57.283 37.500 0.00 0.00 0.00 3.41
96 97 9.477484 AAATATATCGTTGATCTTGTACCTGAC 57.523 33.333 0.00 0.00 0.00 3.51
103 104 9.599866 TGACTGAAAATATATCGTTGATCTTGT 57.400 29.630 0.00 0.00 0.00 3.16
107 108 9.869844 CCTTTGACTGAAAATATATCGTTGATC 57.130 33.333 0.00 0.00 0.00 2.92
108 109 9.396022 ACCTTTGACTGAAAATATATCGTTGAT 57.604 29.630 0.00 0.00 0.00 2.57
109 110 8.786826 ACCTTTGACTGAAAATATATCGTTGA 57.213 30.769 0.00 0.00 0.00 3.18
112 113 9.273016 CCATACCTTTGACTGAAAATATATCGT 57.727 33.333 0.00 0.00 0.00 3.73
113 114 9.489084 TCCATACCTTTGACTGAAAATATATCG 57.511 33.333 0.00 0.00 0.00 2.92
117 118 9.872684 ATGATCCATACCTTTGACTGAAAATAT 57.127 29.630 0.00 0.00 0.00 1.28
119 120 9.872684 ATATGATCCATACCTTTGACTGAAAAT 57.127 29.630 0.00 0.00 0.00 1.82
121 122 9.778741 GTATATGATCCATACCTTTGACTGAAA 57.221 33.333 0.00 0.00 0.00 2.69
122 123 8.933653 TGTATATGATCCATACCTTTGACTGAA 58.066 33.333 10.48 0.00 0.00 3.02
123 124 8.491045 TGTATATGATCCATACCTTTGACTGA 57.509 34.615 10.48 0.00 0.00 3.41
124 125 9.559732 TTTGTATATGATCCATACCTTTGACTG 57.440 33.333 10.48 0.00 0.00 3.51
132 133 9.423061 GCCAAAATTTTGTATATGATCCATACC 57.577 33.333 25.25 0.00 36.45 2.73
135 136 8.926374 TGAGCCAAAATTTTGTATATGATCCAT 58.074 29.630 25.25 2.00 36.45 3.41
136 137 8.303780 TGAGCCAAAATTTTGTATATGATCCA 57.696 30.769 25.25 9.91 36.45 3.41
137 138 7.383300 GCTGAGCCAAAATTTTGTATATGATCC 59.617 37.037 25.25 6.55 36.45 3.36
138 139 7.922278 TGCTGAGCCAAAATTTTGTATATGATC 59.078 33.333 25.25 18.38 36.45 2.92
139 140 7.784037 TGCTGAGCCAAAATTTTGTATATGAT 58.216 30.769 25.25 11.43 36.45 2.45
140 141 7.167924 TGCTGAGCCAAAATTTTGTATATGA 57.832 32.000 25.25 7.14 36.45 2.15
141 142 7.830940 TTGCTGAGCCAAAATTTTGTATATG 57.169 32.000 25.25 13.23 36.45 1.78
142 143 7.011669 GCATTGCTGAGCCAAAATTTTGTATAT 59.988 33.333 25.25 11.00 36.45 0.86
143 144 6.313411 GCATTGCTGAGCCAAAATTTTGTATA 59.687 34.615 25.25 10.82 36.45 1.47
144 145 5.122711 GCATTGCTGAGCCAAAATTTTGTAT 59.877 36.000 25.25 15.37 36.45 2.29
145 146 4.451774 GCATTGCTGAGCCAAAATTTTGTA 59.548 37.500 25.25 10.82 36.45 2.41
146 147 3.251487 GCATTGCTGAGCCAAAATTTTGT 59.749 39.130 25.25 11.28 36.45 2.83
147 148 3.251245 TGCATTGCTGAGCCAAAATTTTG 59.749 39.130 21.65 21.65 37.90 2.44
148 149 3.478509 TGCATTGCTGAGCCAAAATTTT 58.521 36.364 10.49 0.00 0.00 1.82
149 150 3.128852 TGCATTGCTGAGCCAAAATTT 57.871 38.095 10.49 0.00 0.00 1.82
150 151 2.843401 TGCATTGCTGAGCCAAAATT 57.157 40.000 10.49 0.00 0.00 1.82
151 152 2.235155 TCATGCATTGCTGAGCCAAAAT 59.765 40.909 10.49 0.00 0.00 1.82
152 153 1.619332 TCATGCATTGCTGAGCCAAAA 59.381 42.857 10.49 0.00 0.00 2.44
153 154 1.258676 TCATGCATTGCTGAGCCAAA 58.741 45.000 10.49 0.00 0.00 3.28
154 155 1.136110 CATCATGCATTGCTGAGCCAA 59.864 47.619 10.49 0.00 0.00 4.52
155 156 0.744281 CATCATGCATTGCTGAGCCA 59.256 50.000 10.49 0.00 0.00 4.75
156 157 0.597637 GCATCATGCATTGCTGAGCC 60.598 55.000 14.76 3.46 44.26 4.70
157 158 2.886859 GCATCATGCATTGCTGAGC 58.113 52.632 14.76 0.00 44.26 4.26
166 167 8.581578 ATGATAACATATTTCAAGCATCATGCA 58.418 29.630 13.38 0.00 39.42 3.96
167 168 8.981724 ATGATAACATATTTCAAGCATCATGC 57.018 30.769 0.00 0.00 38.14 4.06
168 169 9.569167 GGATGATAACATATTTCAAGCATCATG 57.431 33.333 0.00 0.00 36.82 3.07
169 170 9.304335 TGGATGATAACATATTTCAAGCATCAT 57.696 29.630 0.00 0.00 36.82 2.45
170 171 8.694581 TGGATGATAACATATTTCAAGCATCA 57.305 30.769 0.00 0.00 36.82 3.07
171 172 9.970395 TTTGGATGATAACATATTTCAAGCATC 57.030 29.630 0.00 0.00 36.82 3.91
183 184 9.204337 TCCTGAATTCATTTTGGATGATAACAT 57.796 29.630 8.96 0.00 39.67 2.71
184 185 8.592529 TCCTGAATTCATTTTGGATGATAACA 57.407 30.769 8.96 0.00 0.00 2.41
185 186 9.472361 CATCCTGAATTCATTTTGGATGATAAC 57.528 33.333 31.84 0.00 43.98 1.89
186 187 9.204337 ACATCCTGAATTCATTTTGGATGATAA 57.796 29.630 36.92 13.11 43.98 1.75
187 188 8.635328 CACATCCTGAATTCATTTTGGATGATA 58.365 33.333 36.92 13.64 43.98 2.15
188 189 7.343574 TCACATCCTGAATTCATTTTGGATGAT 59.656 33.333 36.92 26.12 43.98 2.45
189 190 6.664384 TCACATCCTGAATTCATTTTGGATGA 59.336 34.615 36.92 25.00 43.98 2.92
190 191 6.869695 TCACATCCTGAATTCATTTTGGATG 58.130 36.000 32.67 32.67 45.16 3.51
191 192 7.670605 ATCACATCCTGAATTCATTTTGGAT 57.329 32.000 17.17 17.17 34.67 3.41
192 193 8.635328 CATATCACATCCTGAATTCATTTTGGA 58.365 33.333 14.55 14.55 30.60 3.53
193 194 7.384115 GCATATCACATCCTGAATTCATTTTGG 59.616 37.037 8.96 6.86 30.60 3.28
194 195 8.141909 AGCATATCACATCCTGAATTCATTTTG 58.858 33.333 8.96 9.02 30.60 2.44
195 196 8.246430 AGCATATCACATCCTGAATTCATTTT 57.754 30.769 8.96 0.00 30.60 1.82
196 197 7.504574 TGAGCATATCACATCCTGAATTCATTT 59.495 33.333 8.96 0.00 31.12 2.32
197 198 7.002276 TGAGCATATCACATCCTGAATTCATT 58.998 34.615 8.96 0.00 31.12 2.57
198 199 6.540083 TGAGCATATCACATCCTGAATTCAT 58.460 36.000 8.96 0.00 31.12 2.57
199 200 5.932455 TGAGCATATCACATCCTGAATTCA 58.068 37.500 8.12 8.12 31.12 2.57
200 201 6.072618 CCTTGAGCATATCACATCCTGAATTC 60.073 42.308 0.00 0.00 37.77 2.17
201 202 5.768662 CCTTGAGCATATCACATCCTGAATT 59.231 40.000 0.00 0.00 37.77 2.17
202 203 5.072736 TCCTTGAGCATATCACATCCTGAAT 59.927 40.000 0.00 0.00 37.77 2.57
203 204 4.409901 TCCTTGAGCATATCACATCCTGAA 59.590 41.667 0.00 0.00 37.77 3.02
204 205 3.969312 TCCTTGAGCATATCACATCCTGA 59.031 43.478 0.00 0.00 37.77 3.86
205 206 4.347360 TCCTTGAGCATATCACATCCTG 57.653 45.455 0.00 0.00 37.77 3.86
206 207 4.657504 TCTTCCTTGAGCATATCACATCCT 59.342 41.667 0.00 0.00 37.77 3.24
207 208 4.754114 GTCTTCCTTGAGCATATCACATCC 59.246 45.833 0.00 0.00 37.77 3.51
208 209 5.363101 TGTCTTCCTTGAGCATATCACATC 58.637 41.667 0.00 0.00 37.77 3.06
209 210 5.104610 ACTGTCTTCCTTGAGCATATCACAT 60.105 40.000 0.00 0.00 37.77 3.21
210 211 4.223700 ACTGTCTTCCTTGAGCATATCACA 59.776 41.667 0.00 0.00 37.77 3.58
211 212 4.764172 ACTGTCTTCCTTGAGCATATCAC 58.236 43.478 0.00 0.00 37.77 3.06
212 213 4.467438 TGACTGTCTTCCTTGAGCATATCA 59.533 41.667 9.51 0.00 35.62 2.15
213 214 5.016051 TGACTGTCTTCCTTGAGCATATC 57.984 43.478 9.51 0.00 0.00 1.63
214 215 5.426689 TTGACTGTCTTCCTTGAGCATAT 57.573 39.130 9.51 0.00 0.00 1.78
215 216 4.890158 TTGACTGTCTTCCTTGAGCATA 57.110 40.909 9.51 0.00 0.00 3.14
216 217 3.777106 TTGACTGTCTTCCTTGAGCAT 57.223 42.857 9.51 0.00 0.00 3.79
217 218 3.206150 GTTTGACTGTCTTCCTTGAGCA 58.794 45.455 9.51 0.00 0.00 4.26
218 219 3.206150 TGTTTGACTGTCTTCCTTGAGC 58.794 45.455 9.51 0.00 0.00 4.26
219 220 5.818136 TTTGTTTGACTGTCTTCCTTGAG 57.182 39.130 9.51 0.00 0.00 3.02
220 221 6.773976 AATTTGTTTGACTGTCTTCCTTGA 57.226 33.333 9.51 0.00 0.00 3.02
221 222 7.761249 AGAAAATTTGTTTGACTGTCTTCCTTG 59.239 33.333 9.51 0.00 0.00 3.61
222 223 7.840931 AGAAAATTTGTTTGACTGTCTTCCTT 58.159 30.769 9.51 0.00 0.00 3.36
223 224 7.122650 TGAGAAAATTTGTTTGACTGTCTTCCT 59.877 33.333 9.51 0.00 0.00 3.36
224 225 7.257722 TGAGAAAATTTGTTTGACTGTCTTCC 58.742 34.615 9.51 0.00 0.00 3.46
225 226 8.749499 CATGAGAAAATTTGTTTGACTGTCTTC 58.251 33.333 9.51 1.42 0.00 2.87
226 227 7.223387 GCATGAGAAAATTTGTTTGACTGTCTT 59.777 33.333 9.51 0.00 0.00 3.01
227 228 6.698766 GCATGAGAAAATTTGTTTGACTGTCT 59.301 34.615 9.51 0.00 0.00 3.41
228 229 6.476380 TGCATGAGAAAATTTGTTTGACTGTC 59.524 34.615 0.00 0.00 0.00 3.51
229 230 6.339730 TGCATGAGAAAATTTGTTTGACTGT 58.660 32.000 0.00 0.00 0.00 3.55
230 231 6.831727 TGCATGAGAAAATTTGTTTGACTG 57.168 33.333 0.00 0.00 0.00 3.51
231 232 7.846644 TTTGCATGAGAAAATTTGTTTGACT 57.153 28.000 0.00 0.00 0.00 3.41
237 238 8.662141 GCTGATTATTTGCATGAGAAAATTTGT 58.338 29.630 0.00 0.00 34.73 2.83
238 239 8.120465 GGCTGATTATTTGCATGAGAAAATTTG 58.880 33.333 0.00 0.00 34.73 2.32
239 240 7.825270 TGGCTGATTATTTGCATGAGAAAATTT 59.175 29.630 0.00 0.00 34.73 1.82
240 241 7.279313 GTGGCTGATTATTTGCATGAGAAAATT 59.721 33.333 0.00 0.00 34.73 1.82
241 242 6.759827 GTGGCTGATTATTTGCATGAGAAAAT 59.240 34.615 0.00 1.84 36.87 1.82
242 243 6.101332 GTGGCTGATTATTTGCATGAGAAAA 58.899 36.000 0.00 0.00 0.00 2.29
243 244 5.394443 GGTGGCTGATTATTTGCATGAGAAA 60.394 40.000 0.00 0.00 0.00 2.52
244 245 4.098349 GGTGGCTGATTATTTGCATGAGAA 59.902 41.667 0.00 0.00 0.00 2.87
245 246 3.633525 GGTGGCTGATTATTTGCATGAGA 59.366 43.478 0.00 0.00 0.00 3.27
246 247 3.549423 CGGTGGCTGATTATTTGCATGAG 60.549 47.826 0.00 0.00 0.00 2.90
247 248 2.358582 CGGTGGCTGATTATTTGCATGA 59.641 45.455 0.00 0.00 0.00 3.07
248 249 2.358582 TCGGTGGCTGATTATTTGCATG 59.641 45.455 0.00 0.00 0.00 4.06
249 250 2.653726 TCGGTGGCTGATTATTTGCAT 58.346 42.857 0.00 0.00 0.00 3.96
250 251 2.121291 TCGGTGGCTGATTATTTGCA 57.879 45.000 0.00 0.00 0.00 4.08
251 252 3.715628 ATTCGGTGGCTGATTATTTGC 57.284 42.857 0.00 0.00 0.00 3.68
252 253 7.970061 CCATAATATTCGGTGGCTGATTATTTG 59.030 37.037 0.00 7.99 31.78 2.32
253 254 7.122650 CCCATAATATTCGGTGGCTGATTATTT 59.877 37.037 8.29 0.00 31.78 1.40
254 255 6.603201 CCCATAATATTCGGTGGCTGATTATT 59.397 38.462 8.29 8.94 33.09 1.40
255 256 6.122277 CCCATAATATTCGGTGGCTGATTAT 58.878 40.000 8.29 0.00 0.00 1.28
256 257 5.013704 ACCCATAATATTCGGTGGCTGATTA 59.986 40.000 8.29 0.00 0.00 1.75
257 258 4.202567 ACCCATAATATTCGGTGGCTGATT 60.203 41.667 8.29 0.00 0.00 2.57
258 259 3.330701 ACCCATAATATTCGGTGGCTGAT 59.669 43.478 8.29 0.00 0.00 2.90
259 260 2.708861 ACCCATAATATTCGGTGGCTGA 59.291 45.455 8.29 0.00 0.00 4.26
260 261 2.813754 CACCCATAATATTCGGTGGCTG 59.186 50.000 16.31 7.80 41.75 4.85
261 262 3.140325 CACCCATAATATTCGGTGGCT 57.860 47.619 16.31 0.91 41.75 4.75
265 266 4.196193 CACACACACCCATAATATTCGGT 58.804 43.478 0.00 0.00 0.00 4.69
266 267 4.196193 ACACACACACCCATAATATTCGG 58.804 43.478 0.00 0.00 0.00 4.30
267 268 5.465390 CCTACACACACACCCATAATATTCG 59.535 44.000 0.00 0.00 0.00 3.34
268 269 6.588204 TCCTACACACACACCCATAATATTC 58.412 40.000 0.00 0.00 0.00 1.75
269 270 6.569127 TCCTACACACACACCCATAATATT 57.431 37.500 0.00 0.00 0.00 1.28
270 271 6.558775 AGATCCTACACACACACCCATAATAT 59.441 38.462 0.00 0.00 0.00 1.28
271 272 5.903010 AGATCCTACACACACACCCATAATA 59.097 40.000 0.00 0.00 0.00 0.98
272 273 4.721776 AGATCCTACACACACACCCATAAT 59.278 41.667 0.00 0.00 0.00 1.28
273 274 4.101114 AGATCCTACACACACACCCATAA 58.899 43.478 0.00 0.00 0.00 1.90
274 275 3.704566 GAGATCCTACACACACACCCATA 59.295 47.826 0.00 0.00 0.00 2.74
275 276 2.501723 GAGATCCTACACACACACCCAT 59.498 50.000 0.00 0.00 0.00 4.00
276 277 1.899814 GAGATCCTACACACACACCCA 59.100 52.381 0.00 0.00 0.00 4.51
277 278 1.135083 CGAGATCCTACACACACACCC 60.135 57.143 0.00 0.00 0.00 4.61
278 279 1.816835 TCGAGATCCTACACACACACC 59.183 52.381 0.00 0.00 0.00 4.16
279 280 3.128764 TGATCGAGATCCTACACACACAC 59.871 47.826 10.24 0.00 37.02 3.82
280 281 3.128764 GTGATCGAGATCCTACACACACA 59.871 47.826 10.24 0.00 37.02 3.72
281 282 3.489398 GGTGATCGAGATCCTACACACAC 60.489 52.174 10.24 0.00 37.02 3.82
282 283 2.688446 GGTGATCGAGATCCTACACACA 59.312 50.000 10.24 0.00 37.02 3.72
283 284 2.688446 TGGTGATCGAGATCCTACACAC 59.312 50.000 10.24 0.00 37.02 3.82
284 285 3.012934 TGGTGATCGAGATCCTACACA 57.987 47.619 10.24 2.15 37.02 3.72
285 286 4.279671 AGAATGGTGATCGAGATCCTACAC 59.720 45.833 10.24 3.01 37.02 2.90
286 287 4.474394 AGAATGGTGATCGAGATCCTACA 58.526 43.478 10.24 7.14 37.02 2.74
287 288 6.405286 CCATAGAATGGTGATCGAGATCCTAC 60.405 46.154 10.24 3.38 45.54 3.18
288 289 5.654209 CCATAGAATGGTGATCGAGATCCTA 59.346 44.000 10.24 4.37 45.54 2.94
289 290 4.465660 CCATAGAATGGTGATCGAGATCCT 59.534 45.833 10.24 2.46 45.54 3.24
290 291 4.753233 CCATAGAATGGTGATCGAGATCC 58.247 47.826 10.24 2.64 45.54 3.36
303 304 7.756395 AAGCATCCAGAAATACCATAGAATG 57.244 36.000 0.00 0.00 0.00 2.67
304 305 8.636213 CAAAAGCATCCAGAAATACCATAGAAT 58.364 33.333 0.00 0.00 0.00 2.40
305 306 7.833682 TCAAAAGCATCCAGAAATACCATAGAA 59.166 33.333 0.00 0.00 0.00 2.10
306 307 7.345691 TCAAAAGCATCCAGAAATACCATAGA 58.654 34.615 0.00 0.00 0.00 1.98
307 308 7.500227 TCTCAAAAGCATCCAGAAATACCATAG 59.500 37.037 0.00 0.00 0.00 2.23
308 309 7.345691 TCTCAAAAGCATCCAGAAATACCATA 58.654 34.615 0.00 0.00 0.00 2.74
309 310 6.189859 TCTCAAAAGCATCCAGAAATACCAT 58.810 36.000 0.00 0.00 0.00 3.55
310 311 5.569355 TCTCAAAAGCATCCAGAAATACCA 58.431 37.500 0.00 0.00 0.00 3.25
311 312 6.515272 TTCTCAAAAGCATCCAGAAATACC 57.485 37.500 0.00 0.00 0.00 2.73
312 313 6.032717 GCTTCTCAAAAGCATCCAGAAATAC 58.967 40.000 4.96 0.00 42.56 1.89
313 314 5.948162 AGCTTCTCAAAAGCATCCAGAAATA 59.052 36.000 11.90 0.00 45.30 1.40
314 315 4.771054 AGCTTCTCAAAAGCATCCAGAAAT 59.229 37.500 11.90 0.00 45.30 2.17
315 316 4.147321 AGCTTCTCAAAAGCATCCAGAAA 58.853 39.130 11.90 0.00 45.30 2.52
316 317 3.759581 AGCTTCTCAAAAGCATCCAGAA 58.240 40.909 11.90 0.00 45.30 3.02
317 318 3.430042 AGCTTCTCAAAAGCATCCAGA 57.570 42.857 11.90 0.00 45.30 3.86
318 319 4.516365 AAAGCTTCTCAAAAGCATCCAG 57.484 40.909 11.90 0.00 45.30 3.86
319 320 4.262164 GGAAAAGCTTCTCAAAAGCATCCA 60.262 41.667 17.19 0.00 45.30 3.41
320 321 4.021632 AGGAAAAGCTTCTCAAAAGCATCC 60.022 41.667 11.90 14.07 45.30 3.51
321 322 5.131594 AGGAAAAGCTTCTCAAAAGCATC 57.868 39.130 11.90 7.00 45.30 3.91
322 323 5.541953 AAGGAAAAGCTTCTCAAAAGCAT 57.458 34.783 11.90 0.00 45.30 3.79
323 324 5.343307 AAAGGAAAAGCTTCTCAAAAGCA 57.657 34.783 11.90 0.00 45.30 3.91
324 325 6.201044 GGTAAAAGGAAAAGCTTCTCAAAAGC 59.799 38.462 0.00 1.57 43.31 3.51
325 326 7.492524 AGGTAAAAGGAAAAGCTTCTCAAAAG 58.507 34.615 0.00 0.00 0.00 2.27
326 327 7.418337 AGGTAAAAGGAAAAGCTTCTCAAAA 57.582 32.000 0.00 0.00 0.00 2.44
327 328 8.528044 TTAGGTAAAAGGAAAAGCTTCTCAAA 57.472 30.769 0.00 0.00 0.00 2.69
328 329 8.576442 CATTAGGTAAAAGGAAAAGCTTCTCAA 58.424 33.333 0.00 0.00 0.00 3.02
329 330 7.309194 GCATTAGGTAAAAGGAAAAGCTTCTCA 60.309 37.037 0.00 0.00 0.00 3.27
330 331 7.030165 GCATTAGGTAAAAGGAAAAGCTTCTC 58.970 38.462 0.00 0.00 0.00 2.87
331 332 6.071334 GGCATTAGGTAAAAGGAAAAGCTTCT 60.071 38.462 0.00 0.00 0.00 2.85
332 333 6.100004 GGCATTAGGTAAAAGGAAAAGCTTC 58.900 40.000 0.00 0.00 0.00 3.86
333 334 5.336451 CGGCATTAGGTAAAAGGAAAAGCTT 60.336 40.000 0.00 0.00 0.00 3.74
334 335 4.157840 CGGCATTAGGTAAAAGGAAAAGCT 59.842 41.667 0.00 0.00 0.00 3.74
335 336 4.421058 CGGCATTAGGTAAAAGGAAAAGC 58.579 43.478 0.00 0.00 0.00 3.51
336 337 4.676986 GCCGGCATTAGGTAAAAGGAAAAG 60.677 45.833 24.80 0.00 0.00 2.27
337 338 3.193903 GCCGGCATTAGGTAAAAGGAAAA 59.806 43.478 24.80 0.00 0.00 2.29
338 339 2.756207 GCCGGCATTAGGTAAAAGGAAA 59.244 45.455 24.80 0.00 0.00 3.13
339 340 2.025699 AGCCGGCATTAGGTAAAAGGAA 60.026 45.455 31.54 0.00 0.00 3.36
340 341 1.562475 AGCCGGCATTAGGTAAAAGGA 59.438 47.619 31.54 0.00 0.00 3.36
341 342 2.052782 AGCCGGCATTAGGTAAAAGG 57.947 50.000 31.54 0.00 0.00 3.11
342 343 2.876550 GGTAGCCGGCATTAGGTAAAAG 59.123 50.000 31.54 0.00 0.00 2.27
343 344 2.742530 CGGTAGCCGGCATTAGGTAAAA 60.743 50.000 31.54 0.00 44.15 1.52
344 345 1.202557 CGGTAGCCGGCATTAGGTAAA 60.203 52.381 31.54 0.00 44.15 2.01
345 346 0.390124 CGGTAGCCGGCATTAGGTAA 59.610 55.000 31.54 0.00 44.15 2.85
346 347 2.043625 CGGTAGCCGGCATTAGGTA 58.956 57.895 31.54 8.16 44.15 3.08
347 348 2.819550 CGGTAGCCGGCATTAGGT 59.180 61.111 31.54 9.39 44.15 3.08
357 358 3.308438 TGAAGTAAGTTGTCGGTAGCC 57.692 47.619 0.00 0.00 0.00 3.93
358 359 3.062234 GCATGAAGTAAGTTGTCGGTAGC 59.938 47.826 0.00 0.00 0.00 3.58
359 360 4.495422 AGCATGAAGTAAGTTGTCGGTAG 58.505 43.478 0.00 0.00 0.00 3.18
360 361 4.530710 AGCATGAAGTAAGTTGTCGGTA 57.469 40.909 0.00 0.00 0.00 4.02
361 362 3.402628 AGCATGAAGTAAGTTGTCGGT 57.597 42.857 0.00 0.00 0.00 4.69
362 363 6.757010 AGTAATAGCATGAAGTAAGTTGTCGG 59.243 38.462 0.00 0.00 0.00 4.79
363 364 7.757097 AGTAATAGCATGAAGTAAGTTGTCG 57.243 36.000 0.00 0.00 0.00 4.35
365 366 9.938280 TGTTAGTAATAGCATGAAGTAAGTTGT 57.062 29.630 0.00 0.00 0.00 3.32
375 376 9.750125 CAGTCATAAGTGTTAGTAATAGCATGA 57.250 33.333 0.00 0.00 0.00 3.07
376 377 9.750125 TCAGTCATAAGTGTTAGTAATAGCATG 57.250 33.333 0.00 0.00 0.00 4.06
377 378 9.973450 CTCAGTCATAAGTGTTAGTAATAGCAT 57.027 33.333 0.00 0.00 0.00 3.79
378 379 7.921214 GCTCAGTCATAAGTGTTAGTAATAGCA 59.079 37.037 0.00 0.00 0.00 3.49
379 380 7.382759 GGCTCAGTCATAAGTGTTAGTAATAGC 59.617 40.741 0.00 0.00 0.00 2.97
380 381 7.591795 CGGCTCAGTCATAAGTGTTAGTAATAG 59.408 40.741 0.00 0.00 0.00 1.73
381 382 7.423199 CGGCTCAGTCATAAGTGTTAGTAATA 58.577 38.462 0.00 0.00 0.00 0.98
382 383 6.273825 CGGCTCAGTCATAAGTGTTAGTAAT 58.726 40.000 0.00 0.00 0.00 1.89
383 384 5.647589 CGGCTCAGTCATAAGTGTTAGTAA 58.352 41.667 0.00 0.00 0.00 2.24
384 385 4.439700 GCGGCTCAGTCATAAGTGTTAGTA 60.440 45.833 0.00 0.00 0.00 1.82
385 386 3.676324 GCGGCTCAGTCATAAGTGTTAGT 60.676 47.826 0.00 0.00 0.00 2.24
386 387 2.860735 GCGGCTCAGTCATAAGTGTTAG 59.139 50.000 0.00 0.00 0.00 2.34
387 388 2.232696 TGCGGCTCAGTCATAAGTGTTA 59.767 45.455 0.00 0.00 0.00 2.41
388 389 1.001974 TGCGGCTCAGTCATAAGTGTT 59.998 47.619 0.00 0.00 0.00 3.32
389 390 0.608130 TGCGGCTCAGTCATAAGTGT 59.392 50.000 0.00 0.00 0.00 3.55
390 391 1.002366 GTGCGGCTCAGTCATAAGTG 58.998 55.000 0.00 0.00 0.00 3.16
391 392 0.898320 AGTGCGGCTCAGTCATAAGT 59.102 50.000 0.00 0.00 0.00 2.24
392 393 1.662629 CAAGTGCGGCTCAGTCATAAG 59.337 52.381 0.00 0.00 0.00 1.73
393 394 1.725641 CAAGTGCGGCTCAGTCATAA 58.274 50.000 0.00 0.00 0.00 1.90
394 395 0.740868 GCAAGTGCGGCTCAGTCATA 60.741 55.000 0.00 0.00 0.00 2.15
395 396 2.037136 GCAAGTGCGGCTCAGTCAT 61.037 57.895 0.00 0.00 0.00 3.06
396 397 2.666190 GCAAGTGCGGCTCAGTCA 60.666 61.111 0.00 0.00 0.00 3.41
404 405 5.269805 ATTTCTTTTGGAAAGCAAGTGCGG 61.270 41.667 0.00 0.00 45.61 5.69
405 406 3.803778 ATTTCTTTTGGAAAGCAAGTGCG 59.196 39.130 0.00 0.00 45.61 5.34
406 407 5.294060 TCAATTTCTTTTGGAAAGCAAGTGC 59.706 36.000 7.87 0.00 45.61 4.40
407 408 6.907206 TCAATTTCTTTTGGAAAGCAAGTG 57.093 33.333 6.83 6.83 45.61 3.16
408 409 7.607607 AGTTTCAATTTCTTTTGGAAAGCAAGT 59.392 29.630 0.00 0.00 45.61 3.16
409 410 7.977904 AGTTTCAATTTCTTTTGGAAAGCAAG 58.022 30.769 0.00 0.00 45.61 4.01
410 411 7.920160 AGTTTCAATTTCTTTTGGAAAGCAA 57.080 28.000 0.00 0.00 45.61 3.91
411 412 9.260002 GATAGTTTCAATTTCTTTTGGAAAGCA 57.740 29.630 0.00 0.00 45.61 3.91
412 413 9.260002 TGATAGTTTCAATTTCTTTTGGAAAGC 57.740 29.630 0.00 0.00 45.61 3.51
415 416 9.206870 GCATGATAGTTTCAATTTCTTTTGGAA 57.793 29.630 0.00 0.00 38.03 3.53
416 417 7.818930 GGCATGATAGTTTCAATTTCTTTTGGA 59.181 33.333 0.00 0.00 38.03 3.53
417 418 7.820872 AGGCATGATAGTTTCAATTTCTTTTGG 59.179 33.333 0.00 0.00 38.03 3.28
418 419 8.653338 CAGGCATGATAGTTTCAATTTCTTTTG 58.347 33.333 0.00 0.00 38.03 2.44
419 420 8.587608 TCAGGCATGATAGTTTCAATTTCTTTT 58.412 29.630 0.00 0.00 38.03 2.27
420 421 8.125978 TCAGGCATGATAGTTTCAATTTCTTT 57.874 30.769 0.00 0.00 38.03 2.52
421 422 7.613022 TCTCAGGCATGATAGTTTCAATTTCTT 59.387 33.333 0.00 0.00 38.03 2.52
422 423 7.114754 TCTCAGGCATGATAGTTTCAATTTCT 58.885 34.615 0.00 0.00 38.03 2.52
423 424 7.325660 TCTCAGGCATGATAGTTTCAATTTC 57.674 36.000 0.00 0.00 38.03 2.17
424 425 7.558807 TGATCTCAGGCATGATAGTTTCAATTT 59.441 33.333 0.00 0.00 38.03 1.82
425 426 7.013083 GTGATCTCAGGCATGATAGTTTCAATT 59.987 37.037 0.00 0.00 38.03 2.32
426 427 6.485984 GTGATCTCAGGCATGATAGTTTCAAT 59.514 38.462 0.00 0.00 38.03 2.57
427 428 5.819379 GTGATCTCAGGCATGATAGTTTCAA 59.181 40.000 0.00 0.00 38.03 2.69
428 429 5.363101 GTGATCTCAGGCATGATAGTTTCA 58.637 41.667 0.00 0.00 39.12 2.69
429 430 4.754114 GGTGATCTCAGGCATGATAGTTTC 59.246 45.833 0.00 0.00 34.12 2.78
430 431 4.411540 AGGTGATCTCAGGCATGATAGTTT 59.588 41.667 0.00 0.00 34.12 2.66
431 432 3.972638 AGGTGATCTCAGGCATGATAGTT 59.027 43.478 0.00 0.00 34.12 2.24
432 433 3.585360 AGGTGATCTCAGGCATGATAGT 58.415 45.455 0.00 0.00 34.12 2.12
433 434 4.040095 TGAAGGTGATCTCAGGCATGATAG 59.960 45.833 0.00 0.00 34.12 2.08
434 435 3.969312 TGAAGGTGATCTCAGGCATGATA 59.031 43.478 0.00 0.00 34.12 2.15
435 436 2.775960 TGAAGGTGATCTCAGGCATGAT 59.224 45.455 0.00 0.00 34.12 2.45
436 437 2.093288 GTGAAGGTGATCTCAGGCATGA 60.093 50.000 0.00 0.00 0.00 3.07
437 438 2.286872 GTGAAGGTGATCTCAGGCATG 58.713 52.381 0.00 0.00 0.00 4.06
438 439 1.134580 CGTGAAGGTGATCTCAGGCAT 60.135 52.381 0.00 0.00 0.00 4.40
439 440 0.247460 CGTGAAGGTGATCTCAGGCA 59.753 55.000 0.00 0.00 0.00 4.75
440 441 0.460987 CCGTGAAGGTGATCTCAGGC 60.461 60.000 0.00 0.00 34.51 4.85
441 442 0.176680 CCCGTGAAGGTGATCTCAGG 59.823 60.000 0.00 0.00 38.74 3.86
442 443 1.186200 TCCCGTGAAGGTGATCTCAG 58.814 55.000 0.00 0.00 38.74 3.35
443 444 1.639722 TTCCCGTGAAGGTGATCTCA 58.360 50.000 0.00 0.00 38.74 3.27
644 647 3.245658 ACCTACTAGTGGAGAAGAGCCAA 60.246 47.826 7.98 0.00 37.12 4.52
662 666 6.940298 AGTGCAAATAGAAAGCAGTAAACCTA 59.060 34.615 0.00 0.00 39.93 3.08
929 936 5.285401 TCCAGAGGGGTATTGTGATTAAGA 58.715 41.667 0.00 0.00 38.11 2.10
1032 1044 8.728098 AGATAAGGCCCTATTCTTTGATAAAGT 58.272 33.333 0.00 0.00 39.52 2.66
1135 1147 5.344743 TCTTGATAAGACGCTTGGAGAAT 57.655 39.130 2.86 0.00 31.20 2.40
1173 1185 6.935240 TCTCTAAAGAAAACAGATCCTCCA 57.065 37.500 0.00 0.00 0.00 3.86
1427 1450 1.356059 GAGAAAAGAAAGAGGGGCCCT 59.644 52.381 29.30 29.30 36.03 5.19
1744 1769 6.422400 GTGTGGAAGAAGACTGAGTTTCTTAG 59.578 42.308 16.84 0.00 42.13 2.18
1778 1803 5.301298 AGGAGCCTTGCATCATAAATTTCTC 59.699 40.000 0.00 0.00 0.00 2.87
1837 1862 0.702316 AAAACCGGGTATCTTGGGCT 59.298 50.000 6.32 0.00 0.00 5.19
1839 1864 3.014623 GAGAAAAACCGGGTATCTTGGG 58.985 50.000 6.32 0.00 0.00 4.12
1854 1879 3.260884 ACCGAGGTATCTTGCTGAGAAAA 59.739 43.478 0.00 0.00 38.06 2.29
1881 1906 6.391227 AATCCATTTTCGTCTGTCAAAAGT 57.609 33.333 0.00 0.00 0.00 2.66
1901 1926 4.209080 CGGGTTTGCTTGTTGAGAAAAATC 59.791 41.667 0.00 0.00 34.63 2.17
1944 1969 1.535444 TGGAGAAGCCCGAGTTCCA 60.535 57.895 0.00 0.00 35.67 3.53
2021 2047 5.128919 ACTTCTGCTCAATCTTTTGTCTGT 58.871 37.500 0.00 0.00 34.32 3.41
2169 2197 1.285578 GCGAGTCTGATTCTTGAGCC 58.714 55.000 0.00 0.00 0.00 4.70
2196 2224 2.146342 ACTGATTTGTGCTTCCGACAG 58.854 47.619 0.00 0.00 0.00 3.51
2232 2260 4.279659 GACCAAACACGTGATTCTTCAAC 58.720 43.478 25.01 1.25 32.48 3.18
2235 2263 2.661979 GCGACCAAACACGTGATTCTTC 60.662 50.000 25.01 13.37 0.00 2.87
2244 2272 1.082169 CCACATGCGACCAAACACG 60.082 57.895 0.00 0.00 0.00 4.49
2259 2287 6.128172 GCATGCTCACCATATATAAGAACCAC 60.128 42.308 11.37 0.00 31.47 4.16
2296 2324 5.287274 CCGCATCTCGTATGAATGACTAATC 59.713 44.000 9.79 0.00 36.19 1.75
2305 2333 1.570813 CTTGCCGCATCTCGTATGAA 58.429 50.000 0.00 0.00 36.19 2.57
2382 2410 9.678260 ATGAGATGTATCTATGCTTATTTTCCC 57.322 33.333 0.00 0.00 37.25 3.97
2436 2464 4.847198 ACTGTTGATTCAGTGATGCCATA 58.153 39.130 0.00 0.00 45.40 2.74
2440 2468 4.453478 TCAAGACTGTTGATTCAGTGATGC 59.547 41.667 4.06 0.00 46.81 3.91
2447 2475 5.132502 ACCATTGTCAAGACTGTTGATTCA 58.867 37.500 1.53 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.