Multiple sequence alignment - TraesCS5D01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G320500 chr5D 100.000 3392 0 0 1 3392 412607546 412610937 0.000000e+00 6264
1 TraesCS5D01G320500 chr5D 84.055 508 79 2 1 508 375732036 375732541 3.930000e-134 488
2 TraesCS5D01G320500 chr5D 83.784 518 71 8 1 508 347014609 347015123 2.370000e-131 479
3 TraesCS5D01G320500 chr5D 78.011 523 101 11 1 511 512400294 512399774 1.960000e-82 316
4 TraesCS5D01G320500 chr5B 96.321 2446 57 7 979 3392 496992203 496994647 0.000000e+00 3988
5 TraesCS5D01G320500 chr5A 96.859 1910 55 3 979 2883 524719889 524721798 0.000000e+00 3190
6 TraesCS5D01G320500 chr5A 80.266 527 79 14 1 508 584422471 584421951 1.150000e-99 374
7 TraesCS5D01G320500 chr5A 93.625 251 8 6 3091 3340 524721839 524722082 5.350000e-98 368
8 TraesCS5D01G320500 chr5A 95.714 70 3 0 3323 3392 524723996 524724065 2.770000e-21 113
9 TraesCS5D01G320500 chr6D 87.365 649 63 7 1658 2303 2702457 2701825 0.000000e+00 726
10 TraesCS5D01G320500 chr6D 79.457 516 94 12 1 508 372426570 372427081 4.160000e-94 355
11 TraesCS5D01G320500 chr1A 85.602 507 71 2 1 507 32858191 32857687 6.440000e-147 531
12 TraesCS5D01G320500 chr1A 81.378 392 54 12 1 391 545754418 545754045 5.500000e-78 302
13 TraesCS5D01G320500 chr3A 84.158 505 75 3 1 502 639747470 639747972 5.090000e-133 484
14 TraesCS5D01G320500 chr2B 82.171 516 76 8 6 508 209080623 209080111 2.420000e-116 429
15 TraesCS5D01G320500 chr3D 79.029 515 87 20 8 508 95620239 95619732 1.950000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G320500 chr5D 412607546 412610937 3391 False 6264.000000 6264 100.000000 1 3392 1 chr5D.!!$F3 3391
1 TraesCS5D01G320500 chr5D 375732036 375732541 505 False 488.000000 488 84.055000 1 508 1 chr5D.!!$F2 507
2 TraesCS5D01G320500 chr5D 347014609 347015123 514 False 479.000000 479 83.784000 1 508 1 chr5D.!!$F1 507
3 TraesCS5D01G320500 chr5D 512399774 512400294 520 True 316.000000 316 78.011000 1 511 1 chr5D.!!$R1 510
4 TraesCS5D01G320500 chr5B 496992203 496994647 2444 False 3988.000000 3988 96.321000 979 3392 1 chr5B.!!$F1 2413
5 TraesCS5D01G320500 chr5A 524719889 524724065 4176 False 1223.666667 3190 95.399333 979 3392 3 chr5A.!!$F1 2413
6 TraesCS5D01G320500 chr5A 584421951 584422471 520 True 374.000000 374 80.266000 1 508 1 chr5A.!!$R1 507
7 TraesCS5D01G320500 chr6D 2701825 2702457 632 True 726.000000 726 87.365000 1658 2303 1 chr6D.!!$R1 645
8 TraesCS5D01G320500 chr6D 372426570 372427081 511 False 355.000000 355 79.457000 1 508 1 chr6D.!!$F1 507
9 TraesCS5D01G320500 chr1A 32857687 32858191 504 True 531.000000 531 85.602000 1 507 1 chr1A.!!$R1 506
10 TraesCS5D01G320500 chr3A 639747470 639747972 502 False 484.000000 484 84.158000 1 502 1 chr3A.!!$F1 501
11 TraesCS5D01G320500 chr2B 209080111 209080623 512 True 429.000000 429 82.171000 6 508 1 chr2B.!!$R1 502
12 TraesCS5D01G320500 chr3D 95619732 95620239 507 True 333.000000 333 79.029000 8 508 1 chr3D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 589 0.107848 ACGAGGCGGGTTTAAGATGG 60.108 55.0 0.0 0.0 0.0 3.51 F
1006 1055 0.107643 TCCACAAACCACGATGCTCA 59.892 50.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2002 1.370778 CGTGGTACGCTTGTCGACA 60.371 57.895 15.76 15.76 41.67 4.35 R
2907 2982 1.691196 TGAAGCCAAACAACAGAGGG 58.309 50.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 1.098050 ATCATTTGGTCAAGCTCCGC 58.902 50.000 0.00 0.00 0.00 5.54
95 97 4.789095 AATCGGAATCCATCGTTTTACG 57.211 40.909 0.00 0.00 44.19 3.18
251 268 1.207329 GGAGAGCCTGGTAACGATTGT 59.793 52.381 0.00 0.00 42.51 2.71
308 326 1.683629 GCGGAGGAGGAAGAAGAGAGA 60.684 57.143 0.00 0.00 0.00 3.10
358 383 4.529769 TCATGGTGGATTTGGTGCAATTTA 59.470 37.500 0.00 0.00 0.00 1.40
364 389 6.041979 GGTGGATTTGGTGCAATTTAGGATAT 59.958 38.462 0.00 0.00 0.00 1.63
429 474 3.993692 TCCCATATCCACCCCATATTTGT 59.006 43.478 0.00 0.00 0.00 2.83
430 475 5.174010 TCCCATATCCACCCCATATTTGTA 58.826 41.667 0.00 0.00 0.00 2.41
452 500 1.213296 AGATATGAAGGGTGCCGGTT 58.787 50.000 1.90 0.00 0.00 4.44
516 565 1.519408 AAAATCGTGACTGAACCCGG 58.481 50.000 0.00 0.00 0.00 5.73
517 566 0.321298 AAATCGTGACTGAACCCGGG 60.321 55.000 22.25 22.25 0.00 5.73
518 567 2.798148 AATCGTGACTGAACCCGGGC 62.798 60.000 24.08 5.60 0.00 6.13
519 568 4.308458 CGTGACTGAACCCGGGCA 62.308 66.667 24.08 11.03 33.32 5.36
520 569 2.351276 GTGACTGAACCCGGGCAT 59.649 61.111 24.08 10.49 39.27 4.40
521 570 1.600107 GTGACTGAACCCGGGCATA 59.400 57.895 24.08 5.57 39.27 3.14
522 571 0.743345 GTGACTGAACCCGGGCATAC 60.743 60.000 24.08 10.23 39.27 2.39
523 572 1.520787 GACTGAACCCGGGCATACG 60.521 63.158 24.08 8.22 0.00 3.06
524 573 1.952102 GACTGAACCCGGGCATACGA 61.952 60.000 24.08 0.00 35.47 3.43
525 574 1.227263 CTGAACCCGGGCATACGAG 60.227 63.158 24.08 4.11 35.47 4.18
526 575 2.108362 GAACCCGGGCATACGAGG 59.892 66.667 24.08 0.00 35.47 4.63
527 576 4.171103 AACCCGGGCATACGAGGC 62.171 66.667 24.08 0.00 35.47 4.70
532 581 4.171103 GGGCATACGAGGCGGGTT 62.171 66.667 0.00 0.00 34.40 4.11
533 582 2.124860 GGCATACGAGGCGGGTTT 60.125 61.111 0.00 0.00 0.00 3.27
534 583 1.144496 GGCATACGAGGCGGGTTTA 59.856 57.895 0.00 0.00 0.00 2.01
535 584 0.462403 GGCATACGAGGCGGGTTTAA 60.462 55.000 0.00 0.00 0.00 1.52
536 585 0.935196 GCATACGAGGCGGGTTTAAG 59.065 55.000 0.00 0.00 0.00 1.85
537 586 1.472026 GCATACGAGGCGGGTTTAAGA 60.472 52.381 0.00 0.00 0.00 2.10
538 587 2.805657 GCATACGAGGCGGGTTTAAGAT 60.806 50.000 0.00 0.00 0.00 2.40
539 588 2.589798 TACGAGGCGGGTTTAAGATG 57.410 50.000 0.00 0.00 0.00 2.90
540 589 0.107848 ACGAGGCGGGTTTAAGATGG 60.108 55.000 0.00 0.00 0.00 3.51
541 590 1.436983 CGAGGCGGGTTTAAGATGGC 61.437 60.000 0.00 0.00 0.00 4.40
542 591 1.076995 AGGCGGGTTTAAGATGGCC 60.077 57.895 0.00 0.00 40.80 5.36
543 592 2.478033 GGCGGGTTTAAGATGGCCG 61.478 63.158 0.00 0.00 0.00 6.13
544 593 1.450669 GCGGGTTTAAGATGGCCGA 60.451 57.895 0.00 0.00 0.00 5.54
545 594 1.712018 GCGGGTTTAAGATGGCCGAC 61.712 60.000 0.00 0.00 0.00 4.79
546 595 1.093496 CGGGTTTAAGATGGCCGACC 61.093 60.000 0.00 0.00 0.00 4.79
547 596 1.093496 GGGTTTAAGATGGCCGACCG 61.093 60.000 0.00 0.00 39.70 4.79
548 597 0.392060 GGTTTAAGATGGCCGACCGT 60.392 55.000 0.00 0.00 39.70 4.83
549 598 1.134729 GGTTTAAGATGGCCGACCGTA 60.135 52.381 0.00 0.00 39.70 4.02
550 599 2.199236 GTTTAAGATGGCCGACCGTAG 58.801 52.381 0.00 0.00 39.70 3.51
551 600 1.766494 TTAAGATGGCCGACCGTAGA 58.234 50.000 0.00 0.00 39.70 2.59
552 601 1.991121 TAAGATGGCCGACCGTAGAT 58.009 50.000 0.00 0.00 39.70 1.98
553 602 0.389391 AAGATGGCCGACCGTAGATG 59.611 55.000 0.00 0.00 39.70 2.90
554 603 1.664965 GATGGCCGACCGTAGATGC 60.665 63.158 0.00 0.00 39.70 3.91
555 604 2.088674 GATGGCCGACCGTAGATGCT 62.089 60.000 0.00 0.00 39.70 3.79
556 605 2.027751 GGCCGACCGTAGATGCTC 59.972 66.667 0.00 0.00 0.00 4.26
557 606 2.491022 GGCCGACCGTAGATGCTCT 61.491 63.158 0.00 0.00 0.00 4.09
558 607 1.437986 GCCGACCGTAGATGCTCTT 59.562 57.895 0.00 0.00 0.00 2.85
559 608 0.666913 GCCGACCGTAGATGCTCTTA 59.333 55.000 0.00 0.00 0.00 2.10
560 609 1.066605 GCCGACCGTAGATGCTCTTAA 59.933 52.381 0.00 0.00 0.00 1.85
561 610 2.480759 GCCGACCGTAGATGCTCTTAAA 60.481 50.000 0.00 0.00 0.00 1.52
562 611 3.372954 CCGACCGTAGATGCTCTTAAAG 58.627 50.000 0.00 0.00 0.00 1.85
563 612 3.066342 CCGACCGTAGATGCTCTTAAAGA 59.934 47.826 0.00 0.00 0.00 2.52
564 613 4.283678 CGACCGTAGATGCTCTTAAAGAG 58.716 47.826 0.00 0.00 45.04 2.85
582 631 8.835467 TTAAAGAGCGTTAATATTGTTGATGC 57.165 30.769 0.00 0.00 0.00 3.91
583 632 5.424121 AGAGCGTTAATATTGTTGATGCC 57.576 39.130 0.00 0.00 0.00 4.40
584 633 5.126067 AGAGCGTTAATATTGTTGATGCCT 58.874 37.500 0.00 0.00 0.00 4.75
585 634 6.288294 AGAGCGTTAATATTGTTGATGCCTA 58.712 36.000 0.00 0.00 0.00 3.93
586 635 6.936900 AGAGCGTTAATATTGTTGATGCCTAT 59.063 34.615 0.00 0.00 0.00 2.57
587 636 7.118390 AGAGCGTTAATATTGTTGATGCCTATC 59.882 37.037 0.00 0.00 0.00 2.08
588 637 6.710295 AGCGTTAATATTGTTGATGCCTATCA 59.290 34.615 0.00 0.00 41.44 2.15
589 638 7.017645 GCGTTAATATTGTTGATGCCTATCAG 58.982 38.462 0.00 0.00 43.76 2.90
590 639 7.521529 CGTTAATATTGTTGATGCCTATCAGG 58.478 38.462 0.00 0.00 43.76 3.86
591 640 7.361201 CGTTAATATTGTTGATGCCTATCAGGG 60.361 40.741 0.00 0.00 43.76 4.45
592 641 3.959495 ATTGTTGATGCCTATCAGGGT 57.041 42.857 0.00 0.00 43.76 4.34
593 642 3.737559 TTGTTGATGCCTATCAGGGTT 57.262 42.857 0.00 0.00 43.76 4.11
594 643 3.737559 TGTTGATGCCTATCAGGGTTT 57.262 42.857 0.00 0.00 43.76 3.27
595 644 3.355378 TGTTGATGCCTATCAGGGTTTG 58.645 45.455 0.00 0.00 43.76 2.93
596 645 3.245229 TGTTGATGCCTATCAGGGTTTGT 60.245 43.478 0.00 0.00 43.76 2.83
597 646 3.737559 TGATGCCTATCAGGGTTTGTT 57.262 42.857 0.00 0.00 38.37 2.83
598 647 4.046286 TGATGCCTATCAGGGTTTGTTT 57.954 40.909 0.00 0.00 38.37 2.83
599 648 4.415596 TGATGCCTATCAGGGTTTGTTTT 58.584 39.130 0.00 0.00 38.37 2.43
600 649 4.220382 TGATGCCTATCAGGGTTTGTTTTG 59.780 41.667 0.00 0.00 38.37 2.44
601 650 2.896685 TGCCTATCAGGGTTTGTTTTGG 59.103 45.455 0.00 0.00 35.37 3.28
602 651 2.897326 GCCTATCAGGGTTTGTTTTGGT 59.103 45.455 0.00 0.00 35.37 3.67
603 652 3.323691 GCCTATCAGGGTTTGTTTTGGTT 59.676 43.478 0.00 0.00 35.37 3.67
604 653 4.525100 GCCTATCAGGGTTTGTTTTGGTTA 59.475 41.667 0.00 0.00 35.37 2.85
605 654 5.566032 GCCTATCAGGGTTTGTTTTGGTTAC 60.566 44.000 0.00 0.00 35.37 2.50
606 655 5.773176 CCTATCAGGGTTTGTTTTGGTTACT 59.227 40.000 0.00 0.00 0.00 2.24
607 656 4.993029 TCAGGGTTTGTTTTGGTTACTG 57.007 40.909 0.00 0.00 0.00 2.74
608 657 4.601084 TCAGGGTTTGTTTTGGTTACTGA 58.399 39.130 0.00 0.00 0.00 3.41
609 658 5.017490 TCAGGGTTTGTTTTGGTTACTGAA 58.983 37.500 0.00 0.00 30.39 3.02
610 659 5.659079 TCAGGGTTTGTTTTGGTTACTGAAT 59.341 36.000 0.00 0.00 30.39 2.57
611 660 5.983118 CAGGGTTTGTTTTGGTTACTGAATC 59.017 40.000 0.00 0.00 0.00 2.52
612 661 5.659079 AGGGTTTGTTTTGGTTACTGAATCA 59.341 36.000 0.00 0.00 0.00 2.57
613 662 6.155393 AGGGTTTGTTTTGGTTACTGAATCAA 59.845 34.615 0.00 0.00 33.73 2.57
614 663 6.819146 GGGTTTGTTTTGGTTACTGAATCAAA 59.181 34.615 0.00 0.00 42.61 2.69
615 664 7.201574 GGGTTTGTTTTGGTTACTGAATCAAAC 60.202 37.037 18.17 18.17 43.70 2.93
616 665 7.547722 GGTTTGTTTTGGTTACTGAATCAAACT 59.452 33.333 21.53 0.00 43.70 2.66
617 666 8.931775 GTTTGTTTTGGTTACTGAATCAAACTT 58.068 29.630 18.62 0.00 43.70 2.66
618 667 9.495572 TTTGTTTTGGTTACTGAATCAAACTTT 57.504 25.926 0.00 0.00 43.70 2.66
635 684 8.698973 TCAAACTTTATGATTTGTAAGGACCA 57.301 30.769 0.00 0.00 37.16 4.02
636 685 8.792633 TCAAACTTTATGATTTGTAAGGACCAG 58.207 33.333 0.00 0.00 37.16 4.00
637 686 6.759497 ACTTTATGATTTGTAAGGACCAGC 57.241 37.500 0.00 0.00 0.00 4.85
638 687 6.485171 ACTTTATGATTTGTAAGGACCAGCT 58.515 36.000 0.00 0.00 0.00 4.24
639 688 6.948309 ACTTTATGATTTGTAAGGACCAGCTT 59.052 34.615 0.00 0.00 0.00 3.74
640 689 7.451566 ACTTTATGATTTGTAAGGACCAGCTTT 59.548 33.333 0.00 0.00 0.00 3.51
641 690 5.649782 ATGATTTGTAAGGACCAGCTTTG 57.350 39.130 0.00 0.00 0.00 2.77
642 691 4.724399 TGATTTGTAAGGACCAGCTTTGA 58.276 39.130 0.00 0.00 0.00 2.69
643 692 4.518970 TGATTTGTAAGGACCAGCTTTGAC 59.481 41.667 0.00 0.00 0.00 3.18
644 693 3.857157 TTGTAAGGACCAGCTTTGACT 57.143 42.857 0.00 0.00 0.00 3.41
645 694 3.857157 TGTAAGGACCAGCTTTGACTT 57.143 42.857 0.00 0.00 0.00 3.01
646 695 4.164843 TGTAAGGACCAGCTTTGACTTT 57.835 40.909 0.00 0.00 0.00 2.66
647 696 3.882888 TGTAAGGACCAGCTTTGACTTTG 59.117 43.478 0.00 0.00 0.00 2.77
648 697 2.736670 AGGACCAGCTTTGACTTTGT 57.263 45.000 0.00 0.00 0.00 2.83
649 698 2.301346 AGGACCAGCTTTGACTTTGTG 58.699 47.619 0.00 0.00 0.00 3.33
650 699 2.092429 AGGACCAGCTTTGACTTTGTGA 60.092 45.455 0.00 0.00 0.00 3.58
651 700 2.887152 GGACCAGCTTTGACTTTGTGAT 59.113 45.455 0.00 0.00 0.00 3.06
652 701 3.057946 GGACCAGCTTTGACTTTGTGATC 60.058 47.826 0.00 0.00 0.00 2.92
653 702 3.817647 GACCAGCTTTGACTTTGTGATCT 59.182 43.478 0.00 0.00 0.00 2.75
654 703 3.817647 ACCAGCTTTGACTTTGTGATCTC 59.182 43.478 0.00 0.00 0.00 2.75
655 704 3.190118 CCAGCTTTGACTTTGTGATCTCC 59.810 47.826 0.00 0.00 0.00 3.71
656 705 4.070716 CAGCTTTGACTTTGTGATCTCCT 58.929 43.478 0.00 0.00 0.00 3.69
657 706 4.070716 AGCTTTGACTTTGTGATCTCCTG 58.929 43.478 0.00 0.00 0.00 3.86
658 707 3.190118 GCTTTGACTTTGTGATCTCCTGG 59.810 47.826 0.00 0.00 0.00 4.45
659 708 2.479566 TGACTTTGTGATCTCCTGGC 57.520 50.000 0.00 0.00 0.00 4.85
660 709 1.699083 TGACTTTGTGATCTCCTGGCA 59.301 47.619 0.00 0.00 0.00 4.92
661 710 2.106338 TGACTTTGTGATCTCCTGGCAA 59.894 45.455 0.00 0.00 0.00 4.52
662 711 3.245016 TGACTTTGTGATCTCCTGGCAAT 60.245 43.478 0.00 0.00 0.00 3.56
663 712 4.019411 TGACTTTGTGATCTCCTGGCAATA 60.019 41.667 0.00 0.00 0.00 1.90
664 713 4.922206 ACTTTGTGATCTCCTGGCAATAA 58.078 39.130 0.00 0.00 0.00 1.40
665 714 5.513233 ACTTTGTGATCTCCTGGCAATAAT 58.487 37.500 0.00 0.00 0.00 1.28
666 715 5.954150 ACTTTGTGATCTCCTGGCAATAATT 59.046 36.000 0.00 0.00 0.00 1.40
667 716 6.438425 ACTTTGTGATCTCCTGGCAATAATTT 59.562 34.615 0.00 0.00 0.00 1.82
668 717 6.855763 TTGTGATCTCCTGGCAATAATTTT 57.144 33.333 0.00 0.00 0.00 1.82
669 718 6.855763 TGTGATCTCCTGGCAATAATTTTT 57.144 33.333 0.00 0.00 0.00 1.94
670 719 6.866480 TGTGATCTCCTGGCAATAATTTTTC 58.134 36.000 0.00 0.00 0.00 2.29
671 720 6.127366 TGTGATCTCCTGGCAATAATTTTTCC 60.127 38.462 0.00 0.00 0.00 3.13
672 721 5.957168 TGATCTCCTGGCAATAATTTTTCCA 59.043 36.000 0.00 0.00 0.00 3.53
673 722 6.612456 TGATCTCCTGGCAATAATTTTTCCAT 59.388 34.615 0.00 0.00 0.00 3.41
674 723 6.872585 TCTCCTGGCAATAATTTTTCCATT 57.127 33.333 0.00 0.00 0.00 3.16
675 724 7.256494 TCTCCTGGCAATAATTTTTCCATTT 57.744 32.000 0.00 0.00 0.00 2.32
676 725 7.688343 TCTCCTGGCAATAATTTTTCCATTTT 58.312 30.769 0.00 0.00 0.00 1.82
677 726 8.820831 TCTCCTGGCAATAATTTTTCCATTTTA 58.179 29.630 0.00 0.00 0.00 1.52
678 727 9.617523 CTCCTGGCAATAATTTTTCCATTTTAT 57.382 29.630 0.00 0.00 0.00 1.40
679 728 9.612066 TCCTGGCAATAATTTTTCCATTTTATC 57.388 29.630 0.00 0.00 0.00 1.75
680 729 9.617523 CCTGGCAATAATTTTTCCATTTTATCT 57.382 29.630 0.00 0.00 0.00 1.98
714 763 7.603297 ACAACATCAATTTAAGAAACGTTCG 57.397 32.000 0.00 0.00 34.02 3.95
715 764 7.411274 ACAACATCAATTTAAGAAACGTTCGA 58.589 30.769 0.00 0.00 34.02 3.71
716 765 8.073768 ACAACATCAATTTAAGAAACGTTCGAT 58.926 29.630 0.00 0.00 34.02 3.59
717 766 8.567221 CAACATCAATTTAAGAAACGTTCGATC 58.433 33.333 0.00 0.00 34.02 3.69
718 767 8.029642 ACATCAATTTAAGAAACGTTCGATCT 57.970 30.769 0.00 0.00 34.02 2.75
719 768 7.957484 ACATCAATTTAAGAAACGTTCGATCTG 59.043 33.333 0.00 0.00 34.02 2.90
720 769 7.646446 TCAATTTAAGAAACGTTCGATCTGA 57.354 32.000 0.00 0.00 34.02 3.27
721 770 8.078959 TCAATTTAAGAAACGTTCGATCTGAA 57.921 30.769 0.00 0.00 34.02 3.02
722 771 8.552865 TCAATTTAAGAAACGTTCGATCTGAAA 58.447 29.630 11.63 11.63 38.60 2.69
723 772 9.165014 CAATTTAAGAAACGTTCGATCTGAAAA 57.835 29.630 12.78 11.13 38.60 2.29
724 773 9.893305 AATTTAAGAAACGTTCGATCTGAAAAT 57.107 25.926 12.78 12.41 38.60 1.82
725 774 8.708075 TTTAAGAAACGTTCGATCTGAAAATG 57.292 30.769 0.00 0.14 38.60 2.32
726 775 5.924475 AGAAACGTTCGATCTGAAAATGT 57.076 34.783 0.00 0.62 38.60 2.71
727 776 5.679906 AGAAACGTTCGATCTGAAAATGTG 58.320 37.500 0.00 0.00 38.60 3.21
728 777 4.404507 AACGTTCGATCTGAAAATGTGG 57.595 40.909 0.00 0.00 38.60 4.17
729 778 3.399330 ACGTTCGATCTGAAAATGTGGT 58.601 40.909 0.00 0.00 38.60 4.16
730 779 3.813166 ACGTTCGATCTGAAAATGTGGTT 59.187 39.130 0.00 0.00 38.60 3.67
731 780 4.992319 ACGTTCGATCTGAAAATGTGGTTA 59.008 37.500 0.00 0.00 38.60 2.85
732 781 5.642063 ACGTTCGATCTGAAAATGTGGTTAT 59.358 36.000 0.00 0.00 38.60 1.89
733 782 6.183360 ACGTTCGATCTGAAAATGTGGTTATC 60.183 38.462 0.00 0.00 38.60 1.75
734 783 6.183360 CGTTCGATCTGAAAATGTGGTTATCA 60.183 38.462 2.31 0.00 38.60 2.15
735 784 6.662414 TCGATCTGAAAATGTGGTTATCAC 57.338 37.500 0.00 0.00 46.23 3.06
736 785 6.652900 TTCGATCTGAAAATGTGGTTATCACA 59.347 34.615 0.00 0.00 46.12 3.58
753 802 9.403110 GGTTATCACATCTCAAATTCATATTGC 57.597 33.333 0.00 0.00 0.00 3.56
754 803 9.403110 GTTATCACATCTCAAATTCATATTGCC 57.597 33.333 0.00 0.00 0.00 4.52
755 804 6.395426 TCACATCTCAAATTCATATTGCCC 57.605 37.500 0.00 0.00 0.00 5.36
756 805 5.008911 TCACATCTCAAATTCATATTGCCCG 59.991 40.000 0.00 0.00 0.00 6.13
757 806 5.008911 CACATCTCAAATTCATATTGCCCGA 59.991 40.000 0.00 0.00 0.00 5.14
758 807 5.240183 ACATCTCAAATTCATATTGCCCGAG 59.760 40.000 0.00 0.00 0.00 4.63
759 808 5.034852 TCTCAAATTCATATTGCCCGAGA 57.965 39.130 0.00 0.00 0.00 4.04
760 809 5.436175 TCTCAAATTCATATTGCCCGAGAA 58.564 37.500 0.00 0.00 0.00 2.87
761 810 5.528690 TCTCAAATTCATATTGCCCGAGAAG 59.471 40.000 0.00 0.00 0.00 2.85
762 811 5.436175 TCAAATTCATATTGCCCGAGAAGA 58.564 37.500 0.00 0.00 0.00 2.87
763 812 5.296780 TCAAATTCATATTGCCCGAGAAGAC 59.703 40.000 0.00 0.00 0.00 3.01
764 813 3.904800 TTCATATTGCCCGAGAAGACA 57.095 42.857 0.00 0.00 0.00 3.41
765 814 3.179443 TCATATTGCCCGAGAAGACAC 57.821 47.619 0.00 0.00 0.00 3.67
766 815 2.158957 TCATATTGCCCGAGAAGACACC 60.159 50.000 0.00 0.00 0.00 4.16
767 816 1.271856 TATTGCCCGAGAAGACACCA 58.728 50.000 0.00 0.00 0.00 4.17
768 817 0.400213 ATTGCCCGAGAAGACACCAA 59.600 50.000 0.00 0.00 0.00 3.67
769 818 0.181587 TTGCCCGAGAAGACACCAAA 59.818 50.000 0.00 0.00 0.00 3.28
770 819 0.250295 TGCCCGAGAAGACACCAAAG 60.250 55.000 0.00 0.00 0.00 2.77
771 820 1.578206 GCCCGAGAAGACACCAAAGC 61.578 60.000 0.00 0.00 0.00 3.51
772 821 1.291877 CCCGAGAAGACACCAAAGCG 61.292 60.000 0.00 0.00 0.00 4.68
773 822 0.600255 CCGAGAAGACACCAAAGCGT 60.600 55.000 0.00 0.00 0.00 5.07
774 823 0.784778 CGAGAAGACACCAAAGCGTC 59.215 55.000 0.00 0.00 0.00 5.19
775 824 0.784778 GAGAAGACACCAAAGCGTCG 59.215 55.000 0.00 0.00 37.23 5.12
776 825 0.387929 AGAAGACACCAAAGCGTCGA 59.612 50.000 0.00 0.00 37.23 4.20
777 826 1.202486 AGAAGACACCAAAGCGTCGAA 60.202 47.619 0.00 0.00 37.23 3.71
778 827 0.935196 AAGACACCAAAGCGTCGAAC 59.065 50.000 0.00 0.00 37.23 3.95
779 828 0.179094 AGACACCAAAGCGTCGAACA 60.179 50.000 0.00 0.00 37.23 3.18
780 829 0.653636 GACACCAAAGCGTCGAACAA 59.346 50.000 0.00 0.00 0.00 2.83
781 830 1.062880 GACACCAAAGCGTCGAACAAA 59.937 47.619 0.00 0.00 0.00 2.83
782 831 1.469308 ACACCAAAGCGTCGAACAAAA 59.531 42.857 0.00 0.00 0.00 2.44
783 832 2.098443 ACACCAAAGCGTCGAACAAAAT 59.902 40.909 0.00 0.00 0.00 1.82
784 833 3.312973 ACACCAAAGCGTCGAACAAAATA 59.687 39.130 0.00 0.00 0.00 1.40
785 834 4.023536 ACACCAAAGCGTCGAACAAAATAT 60.024 37.500 0.00 0.00 0.00 1.28
786 835 5.179742 ACACCAAAGCGTCGAACAAAATATA 59.820 36.000 0.00 0.00 0.00 0.86
787 836 6.128117 ACACCAAAGCGTCGAACAAAATATAT 60.128 34.615 0.00 0.00 0.00 0.86
788 837 7.064847 ACACCAAAGCGTCGAACAAAATATATA 59.935 33.333 0.00 0.00 0.00 0.86
789 838 7.906010 CACCAAAGCGTCGAACAAAATATATAA 59.094 33.333 0.00 0.00 0.00 0.98
790 839 8.617809 ACCAAAGCGTCGAACAAAATATATAAT 58.382 29.630 0.00 0.00 0.00 1.28
791 840 9.103048 CCAAAGCGTCGAACAAAATATATAATC 57.897 33.333 0.00 0.00 0.00 1.75
792 841 9.864034 CAAAGCGTCGAACAAAATATATAATCT 57.136 29.630 0.00 0.00 0.00 2.40
795 844 8.861101 AGCGTCGAACAAAATATATAATCTAGC 58.139 33.333 0.00 0.00 0.00 3.42
796 845 8.644619 GCGTCGAACAAAATATATAATCTAGCA 58.355 33.333 0.00 0.00 0.00 3.49
865 914 3.418068 GCCGATAGCGCATCTGGC 61.418 66.667 23.98 23.98 42.19 4.85
896 945 4.735132 CCGCTCGCTCGGGAACAA 62.735 66.667 7.20 0.00 45.38 2.83
897 946 3.479269 CGCTCGCTCGGGAACAAC 61.479 66.667 0.00 0.00 0.00 3.32
898 947 3.479269 GCTCGCTCGGGAACAACG 61.479 66.667 0.00 0.00 0.00 4.10
899 948 2.809601 CTCGCTCGGGAACAACGG 60.810 66.667 0.00 0.00 0.00 4.44
902 951 2.746277 GCTCGGGAACAACGGCAT 60.746 61.111 0.00 0.00 0.00 4.40
903 952 2.750888 GCTCGGGAACAACGGCATC 61.751 63.158 0.00 0.00 0.00 3.91
904 953 2.433491 TCGGGAACAACGGCATCG 60.433 61.111 0.00 0.00 43.02 3.84
905 954 4.160635 CGGGAACAACGGCATCGC 62.161 66.667 0.00 0.00 40.63 4.58
906 955 4.160635 GGGAACAACGGCATCGCG 62.161 66.667 0.00 0.00 40.63 5.87
907 956 4.811761 GGAACAACGGCATCGCGC 62.812 66.667 0.00 0.00 40.63 6.86
923 972 4.945433 GCGCGCGCATTTCCTAGC 62.945 66.667 46.11 19.55 41.49 3.42
924 973 3.563088 CGCGCGCATTTCCTAGCA 61.563 61.111 32.61 0.00 0.00 3.49
925 974 2.023320 GCGCGCATTTCCTAGCAC 59.977 61.111 29.10 0.00 0.00 4.40
926 975 2.464459 GCGCGCATTTCCTAGCACT 61.464 57.895 29.10 0.00 0.00 4.40
927 976 1.638467 CGCGCATTTCCTAGCACTC 59.362 57.895 8.75 0.00 0.00 3.51
928 977 1.638467 GCGCATTTCCTAGCACTCG 59.362 57.895 0.30 0.00 0.00 4.18
929 978 1.766143 GCGCATTTCCTAGCACTCGG 61.766 60.000 0.30 0.00 0.00 4.63
930 979 1.766143 CGCATTTCCTAGCACTCGGC 61.766 60.000 0.00 0.00 45.30 5.54
931 980 1.440145 GCATTTCCTAGCACTCGGCC 61.440 60.000 0.00 0.00 46.50 6.13
932 981 0.179000 CATTTCCTAGCACTCGGCCT 59.821 55.000 0.00 0.00 46.50 5.19
933 982 0.466124 ATTTCCTAGCACTCGGCCTC 59.534 55.000 0.00 0.00 46.50 4.70
934 983 0.614979 TTTCCTAGCACTCGGCCTCT 60.615 55.000 0.00 0.00 46.50 3.69
935 984 1.038130 TTCCTAGCACTCGGCCTCTC 61.038 60.000 0.00 0.00 46.50 3.20
936 985 2.494530 CCTAGCACTCGGCCTCTCC 61.495 68.421 0.00 0.00 46.50 3.71
937 986 1.454847 CTAGCACTCGGCCTCTCCT 60.455 63.158 0.00 0.00 46.50 3.69
938 987 1.452145 CTAGCACTCGGCCTCTCCTC 61.452 65.000 0.00 0.00 46.50 3.71
939 988 2.912987 TAGCACTCGGCCTCTCCTCC 62.913 65.000 0.00 0.00 46.50 4.30
940 989 2.043450 CACTCGGCCTCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
941 990 2.124693 CACTCGGCCTCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
942 991 2.313427 ACTCGGCCTCTCCTCCTCT 61.313 63.158 0.00 0.00 0.00 3.69
943 992 1.528309 CTCGGCCTCTCCTCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
944 993 1.994885 CTCGGCCTCTCCTCCTCTCT 61.995 65.000 0.00 0.00 0.00 3.10
945 994 1.528309 CGGCCTCTCCTCCTCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
946 995 1.930520 GGCCTCTCCTCCTCTCTCT 59.069 63.158 0.00 0.00 0.00 3.10
947 996 0.261696 GGCCTCTCCTCCTCTCTCTT 59.738 60.000 0.00 0.00 0.00 2.85
948 997 1.342975 GGCCTCTCCTCCTCTCTCTTT 60.343 57.143 0.00 0.00 0.00 2.52
949 998 2.031870 GCCTCTCCTCCTCTCTCTTTC 58.968 57.143 0.00 0.00 0.00 2.62
950 999 2.622977 GCCTCTCCTCCTCTCTCTTTCA 60.623 54.545 0.00 0.00 0.00 2.69
951 1000 3.023832 CCTCTCCTCCTCTCTCTTTCAC 58.976 54.545 0.00 0.00 0.00 3.18
952 1001 3.309121 CCTCTCCTCCTCTCTCTTTCACT 60.309 52.174 0.00 0.00 0.00 3.41
953 1002 3.696045 TCTCCTCCTCTCTCTTTCACTG 58.304 50.000 0.00 0.00 0.00 3.66
954 1003 2.760092 CTCCTCCTCTCTCTTTCACTGG 59.240 54.545 0.00 0.00 0.00 4.00
955 1004 2.110899 TCCTCCTCTCTCTTTCACTGGT 59.889 50.000 0.00 0.00 0.00 4.00
956 1005 2.495669 CCTCCTCTCTCTTTCACTGGTC 59.504 54.545 0.00 0.00 0.00 4.02
957 1006 3.161067 CTCCTCTCTCTTTCACTGGTCA 58.839 50.000 0.00 0.00 0.00 4.02
958 1007 3.576118 CTCCTCTCTCTTTCACTGGTCAA 59.424 47.826 0.00 0.00 0.00 3.18
959 1008 3.576118 TCCTCTCTCTTTCACTGGTCAAG 59.424 47.826 0.00 0.00 0.00 3.02
960 1009 3.324993 CTCTCTCTTTCACTGGTCAAGC 58.675 50.000 0.00 0.00 0.00 4.01
961 1010 2.064762 CTCTCTTTCACTGGTCAAGCG 58.935 52.381 0.00 0.00 0.00 4.68
962 1011 1.151668 CTCTTTCACTGGTCAAGCGG 58.848 55.000 0.00 0.00 0.00 5.52
963 1012 0.884704 TCTTTCACTGGTCAAGCGGC 60.885 55.000 0.00 0.00 0.00 6.53
964 1013 1.856265 CTTTCACTGGTCAAGCGGCC 61.856 60.000 0.00 0.00 0.00 6.13
965 1014 3.842925 TTCACTGGTCAAGCGGCCC 62.843 63.158 0.00 0.00 0.00 5.80
966 1015 4.641645 CACTGGTCAAGCGGCCCA 62.642 66.667 0.00 0.00 0.00 5.36
982 1031 4.619320 CAGCCCAGCCCACCCAAA 62.619 66.667 0.00 0.00 0.00 3.28
983 1032 3.843800 AGCCCAGCCCACCCAAAA 61.844 61.111 0.00 0.00 0.00 2.44
984 1033 3.625897 GCCCAGCCCACCCAAAAC 61.626 66.667 0.00 0.00 0.00 2.43
985 1034 2.922503 CCCAGCCCACCCAAAACC 60.923 66.667 0.00 0.00 0.00 3.27
990 1039 1.535202 GCCCACCCAAAACCATCCA 60.535 57.895 0.00 0.00 0.00 3.41
996 1045 1.765904 ACCCAAAACCATCCACAAACC 59.234 47.619 0.00 0.00 0.00 3.27
1006 1055 0.107643 TCCACAAACCACGATGCTCA 59.892 50.000 0.00 0.00 0.00 4.26
1008 1057 1.229428 CACAAACCACGATGCTCAGT 58.771 50.000 0.00 0.00 0.00 3.41
1021 1070 4.733371 TCAGTCGCATCGCCGCAA 62.733 61.111 0.00 0.00 0.00 4.85
1101 1153 0.842467 CCTCCAAGTCCACCTCCCTT 60.842 60.000 0.00 0.00 0.00 3.95
1947 2002 1.752498 CATGAGCTGCTCTCTCTCACT 59.248 52.381 28.04 2.73 42.38 3.41
2262 2317 3.920196 GGTGGTGGTCGTCGTGGT 61.920 66.667 0.00 0.00 0.00 4.16
2519 2574 4.813161 CACCATGGTGTAGTGATCTTGATC 59.187 45.833 32.94 3.82 40.91 2.92
2567 2622 5.532779 GGTGAAAATTTGAGTGAGAGGTCTT 59.467 40.000 0.00 0.00 0.00 3.01
2568 2623 6.710744 GGTGAAAATTTGAGTGAGAGGTCTTA 59.289 38.462 0.00 0.00 0.00 2.10
2826 2882 4.377021 TGGAATATCACCATAGCAACGTC 58.623 43.478 0.00 0.00 32.03 4.34
3031 3112 1.434696 GTGCACATGGTGGCATAGC 59.565 57.895 13.17 0.00 42.75 2.97
3032 3113 1.001145 TGCACATGGTGGCATAGCA 60.001 52.632 0.00 0.00 41.72 3.49
3086 3167 1.913951 ATCAGGGTTGCCGCTCATGA 61.914 55.000 0.00 0.00 0.00 3.07
3133 3216 4.032786 GTGCTTTGGTGATGTTTTTGTGTC 59.967 41.667 0.00 0.00 0.00 3.67
3200 3283 2.686915 GAGCTATGCATTCAGCCACTTT 59.313 45.455 16.20 0.00 44.83 2.66
3241 3324 1.726791 ACGATAAGCAGCTTCGTTGTG 59.273 47.619 12.07 0.00 42.99 3.33
3357 5372 4.835284 TGACAGGCCACTTATGATGTAA 57.165 40.909 5.01 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.151648 TGACCAAATGATTCAAGATGAGTTCC 59.848 38.462 0.00 0.00 0.00 3.62
47 49 1.033574 GGACGAGGAGTATGGACTGG 58.966 60.000 0.00 0.00 35.45 4.00
73 75 5.350633 ACGTAAAACGATGGATTCCGATTA 58.649 37.500 6.44 0.00 46.05 1.75
74 76 4.186159 ACGTAAAACGATGGATTCCGATT 58.814 39.130 6.44 0.00 46.05 3.34
130 132 2.485426 CCTTGTGCTTGATGTGTTCGAT 59.515 45.455 0.00 0.00 0.00 3.59
242 259 1.448893 GCCCGCTCCACAATCGTTA 60.449 57.895 0.00 0.00 0.00 3.18
308 326 2.243221 AGCCAGACCCATTTGCTATCTT 59.757 45.455 0.00 0.00 0.00 2.40
358 383 2.311463 CCGATAGCCCGATCATATCCT 58.689 52.381 0.00 0.00 0.00 3.24
364 389 1.906824 GGACCCGATAGCCCGATCA 60.907 63.158 0.00 0.00 0.00 2.92
429 474 3.162666 CCGGCACCCTTCATATCTAGTA 58.837 50.000 0.00 0.00 0.00 1.82
430 475 1.971357 CCGGCACCCTTCATATCTAGT 59.029 52.381 0.00 0.00 0.00 2.57
452 500 1.596934 CTCTCAAACGCCTGGGCTA 59.403 57.895 10.04 0.00 39.32 3.93
458 506 0.883833 CAAATGGCTCTCAAACGCCT 59.116 50.000 0.00 0.00 46.42 5.52
469 517 0.250513 GACGGTCCTCTCAAATGGCT 59.749 55.000 0.00 0.00 0.00 4.75
515 564 2.314415 TAAACCCGCCTCGTATGCCC 62.314 60.000 0.00 0.00 0.00 5.36
516 565 0.462403 TTAAACCCGCCTCGTATGCC 60.462 55.000 0.00 0.00 0.00 4.40
517 566 0.935196 CTTAAACCCGCCTCGTATGC 59.065 55.000 0.00 0.00 0.00 3.14
518 567 2.589798 TCTTAAACCCGCCTCGTATG 57.410 50.000 0.00 0.00 0.00 2.39
519 568 2.224209 CCATCTTAAACCCGCCTCGTAT 60.224 50.000 0.00 0.00 0.00 3.06
520 569 1.137479 CCATCTTAAACCCGCCTCGTA 59.863 52.381 0.00 0.00 0.00 3.43
521 570 0.107848 CCATCTTAAACCCGCCTCGT 60.108 55.000 0.00 0.00 0.00 4.18
522 571 1.436983 GCCATCTTAAACCCGCCTCG 61.437 60.000 0.00 0.00 0.00 4.63
523 572 1.101635 GGCCATCTTAAACCCGCCTC 61.102 60.000 0.00 0.00 33.50 4.70
524 573 1.076995 GGCCATCTTAAACCCGCCT 60.077 57.895 0.00 0.00 33.50 5.52
525 574 2.478033 CGGCCATCTTAAACCCGCC 61.478 63.158 2.24 0.00 31.87 6.13
526 575 1.450669 TCGGCCATCTTAAACCCGC 60.451 57.895 2.24 0.00 38.85 6.13
527 576 1.093496 GGTCGGCCATCTTAAACCCG 61.093 60.000 0.00 0.00 40.25 5.28
528 577 1.093496 CGGTCGGCCATCTTAAACCC 61.093 60.000 6.96 0.00 34.09 4.11
529 578 0.392060 ACGGTCGGCCATCTTAAACC 60.392 55.000 6.96 0.00 34.09 3.27
530 579 2.159198 TCTACGGTCGGCCATCTTAAAC 60.159 50.000 6.96 0.00 34.09 2.01
531 580 2.101783 TCTACGGTCGGCCATCTTAAA 58.898 47.619 6.96 0.00 34.09 1.52
532 581 1.766494 TCTACGGTCGGCCATCTTAA 58.234 50.000 6.96 0.00 34.09 1.85
533 582 1.611977 CATCTACGGTCGGCCATCTTA 59.388 52.381 6.96 0.00 34.09 2.10
534 583 0.389391 CATCTACGGTCGGCCATCTT 59.611 55.000 6.96 0.00 34.09 2.40
535 584 2.041976 CATCTACGGTCGGCCATCT 58.958 57.895 6.96 0.00 34.09 2.90
536 585 1.664965 GCATCTACGGTCGGCCATC 60.665 63.158 6.96 0.00 34.09 3.51
537 586 2.088674 GAGCATCTACGGTCGGCCAT 62.089 60.000 6.96 0.00 34.09 4.40
538 587 2.758327 AGCATCTACGGTCGGCCA 60.758 61.111 6.96 0.00 34.09 5.36
539 588 2.027751 GAGCATCTACGGTCGGCC 59.972 66.667 0.00 0.00 0.00 6.13
556 605 8.947940 GCATCAACAATATTAACGCTCTTTAAG 58.052 33.333 0.00 0.00 0.00 1.85
557 606 7.913297 GGCATCAACAATATTAACGCTCTTTAA 59.087 33.333 0.00 0.00 0.00 1.52
558 607 7.282224 AGGCATCAACAATATTAACGCTCTTTA 59.718 33.333 0.00 0.00 0.00 1.85
559 608 6.095440 AGGCATCAACAATATTAACGCTCTTT 59.905 34.615 0.00 0.00 0.00 2.52
560 609 5.590259 AGGCATCAACAATATTAACGCTCTT 59.410 36.000 0.00 0.00 0.00 2.85
561 610 5.126067 AGGCATCAACAATATTAACGCTCT 58.874 37.500 0.00 0.00 0.00 4.09
562 611 5.424121 AGGCATCAACAATATTAACGCTC 57.576 39.130 0.00 0.00 0.00 5.03
563 612 6.710295 TGATAGGCATCAACAATATTAACGCT 59.290 34.615 0.00 0.00 38.25 5.07
564 613 6.898041 TGATAGGCATCAACAATATTAACGC 58.102 36.000 0.00 0.00 38.25 4.84
565 614 7.361201 CCCTGATAGGCATCAACAATATTAACG 60.361 40.741 0.00 0.00 40.66 3.18
566 615 7.448469 ACCCTGATAGGCATCAACAATATTAAC 59.552 37.037 0.00 0.00 40.66 2.01
567 616 7.526041 ACCCTGATAGGCATCAACAATATTAA 58.474 34.615 0.00 0.00 40.66 1.40
568 617 7.090319 ACCCTGATAGGCATCAACAATATTA 57.910 36.000 0.00 0.00 40.66 0.98
569 618 5.957132 ACCCTGATAGGCATCAACAATATT 58.043 37.500 0.00 0.00 40.66 1.28
570 619 5.589367 ACCCTGATAGGCATCAACAATAT 57.411 39.130 0.00 0.00 40.66 1.28
571 620 5.387113 AACCCTGATAGGCATCAACAATA 57.613 39.130 0.00 0.00 40.66 1.90
572 621 3.959495 ACCCTGATAGGCATCAACAAT 57.041 42.857 0.00 0.00 40.66 2.71
573 622 3.737559 AACCCTGATAGGCATCAACAA 57.262 42.857 0.00 0.00 40.66 2.83
574 623 3.245229 ACAAACCCTGATAGGCATCAACA 60.245 43.478 0.00 0.00 40.66 3.33
575 624 3.356290 ACAAACCCTGATAGGCATCAAC 58.644 45.455 0.00 0.00 40.66 3.18
576 625 3.737559 ACAAACCCTGATAGGCATCAA 57.262 42.857 0.00 0.00 40.66 2.57
577 626 3.737559 AACAAACCCTGATAGGCATCA 57.262 42.857 0.00 0.00 38.90 3.07
578 627 4.381932 CCAAAACAAACCCTGATAGGCATC 60.382 45.833 0.00 0.00 32.73 3.91
579 628 3.515104 CCAAAACAAACCCTGATAGGCAT 59.485 43.478 0.00 0.00 32.73 4.40
580 629 2.896685 CCAAAACAAACCCTGATAGGCA 59.103 45.455 0.00 0.00 32.73 4.75
581 630 2.897326 ACCAAAACAAACCCTGATAGGC 59.103 45.455 0.00 0.00 32.73 3.93
582 631 5.773176 AGTAACCAAAACAAACCCTGATAGG 59.227 40.000 0.00 0.00 34.30 2.57
583 632 6.488683 TCAGTAACCAAAACAAACCCTGATAG 59.511 38.462 0.00 0.00 0.00 2.08
584 633 6.366340 TCAGTAACCAAAACAAACCCTGATA 58.634 36.000 0.00 0.00 0.00 2.15
585 634 5.205056 TCAGTAACCAAAACAAACCCTGAT 58.795 37.500 0.00 0.00 0.00 2.90
586 635 4.601084 TCAGTAACCAAAACAAACCCTGA 58.399 39.130 0.00 0.00 0.00 3.86
587 636 4.993029 TCAGTAACCAAAACAAACCCTG 57.007 40.909 0.00 0.00 0.00 4.45
588 637 5.659079 TGATTCAGTAACCAAAACAAACCCT 59.341 36.000 0.00 0.00 0.00 4.34
589 638 5.908341 TGATTCAGTAACCAAAACAAACCC 58.092 37.500 0.00 0.00 0.00 4.11
590 639 7.547722 AGTTTGATTCAGTAACCAAAACAAACC 59.452 33.333 0.59 0.00 42.64 3.27
591 640 8.474006 AGTTTGATTCAGTAACCAAAACAAAC 57.526 30.769 0.00 0.00 42.26 2.93
592 641 9.495572 AAAGTTTGATTCAGTAACCAAAACAAA 57.504 25.926 0.00 0.00 31.39 2.83
609 658 9.308000 TGGTCCTTACAAATCATAAAGTTTGAT 57.692 29.630 0.00 0.00 38.39 2.57
610 659 8.698973 TGGTCCTTACAAATCATAAAGTTTGA 57.301 30.769 0.00 0.00 38.39 2.69
611 660 7.542130 GCTGGTCCTTACAAATCATAAAGTTTG 59.458 37.037 0.00 0.00 40.29 2.93
612 661 7.451566 AGCTGGTCCTTACAAATCATAAAGTTT 59.548 33.333 0.00 0.00 0.00 2.66
613 662 6.948309 AGCTGGTCCTTACAAATCATAAAGTT 59.052 34.615 0.00 0.00 0.00 2.66
614 663 6.485171 AGCTGGTCCTTACAAATCATAAAGT 58.515 36.000 0.00 0.00 0.00 2.66
615 664 7.396540 AAGCTGGTCCTTACAAATCATAAAG 57.603 36.000 0.00 0.00 0.00 1.85
616 665 7.450014 TCAAAGCTGGTCCTTACAAATCATAAA 59.550 33.333 0.00 0.00 0.00 1.40
617 666 6.945435 TCAAAGCTGGTCCTTACAAATCATAA 59.055 34.615 0.00 0.00 0.00 1.90
618 667 6.374333 GTCAAAGCTGGTCCTTACAAATCATA 59.626 38.462 0.00 0.00 0.00 2.15
619 668 5.183904 GTCAAAGCTGGTCCTTACAAATCAT 59.816 40.000 0.00 0.00 0.00 2.45
620 669 4.518970 GTCAAAGCTGGTCCTTACAAATCA 59.481 41.667 0.00 0.00 0.00 2.57
621 670 4.762251 AGTCAAAGCTGGTCCTTACAAATC 59.238 41.667 0.00 0.00 0.00 2.17
622 671 4.729868 AGTCAAAGCTGGTCCTTACAAAT 58.270 39.130 0.00 0.00 0.00 2.32
623 672 4.164843 AGTCAAAGCTGGTCCTTACAAA 57.835 40.909 0.00 0.00 0.00 2.83
624 673 3.857157 AGTCAAAGCTGGTCCTTACAA 57.143 42.857 0.00 0.00 0.00 2.41
625 674 3.857157 AAGTCAAAGCTGGTCCTTACA 57.143 42.857 0.00 0.00 0.00 2.41
626 675 3.883489 ACAAAGTCAAAGCTGGTCCTTAC 59.117 43.478 0.00 0.00 0.00 2.34
627 676 3.882888 CACAAAGTCAAAGCTGGTCCTTA 59.117 43.478 0.00 0.00 0.00 2.69
628 677 2.689983 CACAAAGTCAAAGCTGGTCCTT 59.310 45.455 0.00 0.00 0.00 3.36
629 678 2.092429 TCACAAAGTCAAAGCTGGTCCT 60.092 45.455 0.00 0.00 0.00 3.85
630 679 2.297701 TCACAAAGTCAAAGCTGGTCC 58.702 47.619 0.00 0.00 0.00 4.46
631 680 3.817647 AGATCACAAAGTCAAAGCTGGTC 59.182 43.478 0.00 0.00 0.00 4.02
632 681 3.817647 GAGATCACAAAGTCAAAGCTGGT 59.182 43.478 0.00 0.00 0.00 4.00
633 682 3.190118 GGAGATCACAAAGTCAAAGCTGG 59.810 47.826 0.00 0.00 0.00 4.85
634 683 4.070716 AGGAGATCACAAAGTCAAAGCTG 58.929 43.478 0.00 0.00 0.00 4.24
635 684 4.070716 CAGGAGATCACAAAGTCAAAGCT 58.929 43.478 0.00 0.00 0.00 3.74
636 685 3.190118 CCAGGAGATCACAAAGTCAAAGC 59.810 47.826 0.00 0.00 0.00 3.51
637 686 3.190118 GCCAGGAGATCACAAAGTCAAAG 59.810 47.826 0.00 0.00 0.00 2.77
638 687 3.149196 GCCAGGAGATCACAAAGTCAAA 58.851 45.455 0.00 0.00 0.00 2.69
639 688 2.106338 TGCCAGGAGATCACAAAGTCAA 59.894 45.455 0.00 0.00 0.00 3.18
640 689 1.699083 TGCCAGGAGATCACAAAGTCA 59.301 47.619 0.00 0.00 0.00 3.41
641 690 2.479566 TGCCAGGAGATCACAAAGTC 57.520 50.000 0.00 0.00 0.00 3.01
642 691 2.957402 TTGCCAGGAGATCACAAAGT 57.043 45.000 0.00 0.00 0.00 2.66
643 692 6.461110 AATTATTGCCAGGAGATCACAAAG 57.539 37.500 0.00 0.00 0.00 2.77
644 693 6.855763 AAATTATTGCCAGGAGATCACAAA 57.144 33.333 0.00 0.00 0.00 2.83
645 694 6.855763 AAAATTATTGCCAGGAGATCACAA 57.144 33.333 0.00 0.00 0.00 3.33
646 695 6.127366 GGAAAAATTATTGCCAGGAGATCACA 60.127 38.462 0.00 0.00 0.00 3.58
647 696 6.127366 TGGAAAAATTATTGCCAGGAGATCAC 60.127 38.462 0.00 0.00 0.00 3.06
648 697 5.957168 TGGAAAAATTATTGCCAGGAGATCA 59.043 36.000 0.00 0.00 0.00 2.92
649 698 6.469782 TGGAAAAATTATTGCCAGGAGATC 57.530 37.500 0.00 0.00 0.00 2.75
650 699 7.441903 AATGGAAAAATTATTGCCAGGAGAT 57.558 32.000 0.00 0.00 30.23 2.75
651 700 6.872585 AATGGAAAAATTATTGCCAGGAGA 57.127 33.333 0.00 0.00 30.23 3.71
652 701 7.926674 AAAATGGAAAAATTATTGCCAGGAG 57.073 32.000 0.00 0.00 30.23 3.69
653 702 9.612066 GATAAAATGGAAAAATTATTGCCAGGA 57.388 29.630 0.00 0.00 30.23 3.86
654 703 9.617523 AGATAAAATGGAAAAATTATTGCCAGG 57.382 29.630 6.33 0.00 30.23 4.45
688 737 9.160576 CGAACGTTTCTTAAATTGATGTTGTAA 57.839 29.630 0.46 0.00 0.00 2.41
689 738 8.549548 TCGAACGTTTCTTAAATTGATGTTGTA 58.450 29.630 0.46 0.00 0.00 2.41
690 739 7.411274 TCGAACGTTTCTTAAATTGATGTTGT 58.589 30.769 0.46 0.00 0.00 3.32
691 740 7.830217 TCGAACGTTTCTTAAATTGATGTTG 57.170 32.000 0.46 0.00 0.00 3.33
692 741 8.504005 AGATCGAACGTTTCTTAAATTGATGTT 58.496 29.630 0.46 0.00 0.00 2.71
693 742 7.957484 CAGATCGAACGTTTCTTAAATTGATGT 59.043 33.333 0.46 0.00 0.00 3.06
694 743 8.168626 TCAGATCGAACGTTTCTTAAATTGATG 58.831 33.333 0.46 0.00 0.00 3.07
695 744 8.251750 TCAGATCGAACGTTTCTTAAATTGAT 57.748 30.769 0.46 0.00 0.00 2.57
696 745 7.646446 TCAGATCGAACGTTTCTTAAATTGA 57.354 32.000 0.46 0.00 0.00 2.57
697 746 8.708075 TTTCAGATCGAACGTTTCTTAAATTG 57.292 30.769 0.46 0.00 31.73 2.32
698 747 9.893305 ATTTTCAGATCGAACGTTTCTTAAATT 57.107 25.926 0.46 0.29 31.73 1.82
699 748 9.329913 CATTTTCAGATCGAACGTTTCTTAAAT 57.670 29.630 0.46 7.24 31.73 1.40
700 749 8.339714 ACATTTTCAGATCGAACGTTTCTTAAA 58.660 29.630 0.46 3.11 31.73 1.52
701 750 7.796660 CACATTTTCAGATCGAACGTTTCTTAA 59.203 33.333 0.46 0.00 31.73 1.85
702 751 7.287950 CACATTTTCAGATCGAACGTTTCTTA 58.712 34.615 0.46 0.00 31.73 2.10
703 752 6.136071 CACATTTTCAGATCGAACGTTTCTT 58.864 36.000 0.46 0.00 31.73 2.52
704 753 5.334105 CCACATTTTCAGATCGAACGTTTCT 60.334 40.000 0.46 0.00 31.73 2.52
705 754 4.846137 CCACATTTTCAGATCGAACGTTTC 59.154 41.667 0.46 0.00 31.73 2.78
706 755 4.274950 ACCACATTTTCAGATCGAACGTTT 59.725 37.500 0.46 0.00 31.73 3.60
707 756 3.813166 ACCACATTTTCAGATCGAACGTT 59.187 39.130 0.00 0.00 31.73 3.99
708 757 3.399330 ACCACATTTTCAGATCGAACGT 58.601 40.909 0.00 0.00 31.73 3.99
709 758 4.404507 AACCACATTTTCAGATCGAACG 57.595 40.909 0.00 0.00 31.73 3.95
710 759 6.961554 GTGATAACCACATTTTCAGATCGAAC 59.038 38.462 0.00 0.00 45.03 3.95
711 760 7.072177 GTGATAACCACATTTTCAGATCGAA 57.928 36.000 0.00 0.00 45.03 3.71
712 761 6.662414 GTGATAACCACATTTTCAGATCGA 57.338 37.500 0.00 0.00 45.03 3.59
727 776 9.403110 GCAATATGAATTTGAGATGTGATAACC 57.597 33.333 0.00 0.00 0.00 2.85
728 777 9.403110 GGCAATATGAATTTGAGATGTGATAAC 57.597 33.333 0.00 0.00 0.00 1.89
729 778 8.579006 GGGCAATATGAATTTGAGATGTGATAA 58.421 33.333 0.00 0.00 0.00 1.75
730 779 7.094677 CGGGCAATATGAATTTGAGATGTGATA 60.095 37.037 0.00 0.00 0.00 2.15
731 780 6.294342 CGGGCAATATGAATTTGAGATGTGAT 60.294 38.462 0.00 0.00 0.00 3.06
732 781 5.008911 CGGGCAATATGAATTTGAGATGTGA 59.991 40.000 0.00 0.00 0.00 3.58
733 782 5.008911 TCGGGCAATATGAATTTGAGATGTG 59.991 40.000 0.00 0.00 0.00 3.21
734 783 5.132502 TCGGGCAATATGAATTTGAGATGT 58.867 37.500 0.00 0.00 0.00 3.06
735 784 5.471116 TCTCGGGCAATATGAATTTGAGATG 59.529 40.000 0.00 0.00 0.00 2.90
736 785 5.624159 TCTCGGGCAATATGAATTTGAGAT 58.376 37.500 0.00 0.00 0.00 2.75
737 786 5.034852 TCTCGGGCAATATGAATTTGAGA 57.965 39.130 0.00 0.00 0.00 3.27
738 787 5.528690 TCTTCTCGGGCAATATGAATTTGAG 59.471 40.000 0.00 0.00 0.00 3.02
739 788 5.296780 GTCTTCTCGGGCAATATGAATTTGA 59.703 40.000 0.00 0.00 0.00 2.69
740 789 5.066375 TGTCTTCTCGGGCAATATGAATTTG 59.934 40.000 0.00 0.00 0.00 2.32
741 790 5.066505 GTGTCTTCTCGGGCAATATGAATTT 59.933 40.000 0.00 0.00 0.00 1.82
742 791 4.576463 GTGTCTTCTCGGGCAATATGAATT 59.424 41.667 0.00 0.00 0.00 2.17
743 792 4.130118 GTGTCTTCTCGGGCAATATGAAT 58.870 43.478 0.00 0.00 0.00 2.57
744 793 3.531538 GTGTCTTCTCGGGCAATATGAA 58.468 45.455 0.00 0.00 0.00 2.57
745 794 2.158957 GGTGTCTTCTCGGGCAATATGA 60.159 50.000 0.00 0.00 0.00 2.15
746 795 2.213499 GGTGTCTTCTCGGGCAATATG 58.787 52.381 0.00 0.00 0.00 1.78
747 796 1.837439 TGGTGTCTTCTCGGGCAATAT 59.163 47.619 0.00 0.00 0.00 1.28
748 797 1.271856 TGGTGTCTTCTCGGGCAATA 58.728 50.000 0.00 0.00 0.00 1.90
749 798 0.400213 TTGGTGTCTTCTCGGGCAAT 59.600 50.000 0.00 0.00 0.00 3.56
750 799 0.181587 TTTGGTGTCTTCTCGGGCAA 59.818 50.000 0.00 0.00 0.00 4.52
751 800 0.250295 CTTTGGTGTCTTCTCGGGCA 60.250 55.000 0.00 0.00 0.00 5.36
752 801 1.578206 GCTTTGGTGTCTTCTCGGGC 61.578 60.000 0.00 0.00 0.00 6.13
753 802 1.291877 CGCTTTGGTGTCTTCTCGGG 61.292 60.000 0.00 0.00 0.00 5.14
754 803 0.600255 ACGCTTTGGTGTCTTCTCGG 60.600 55.000 0.00 0.00 0.00 4.63
755 804 0.784778 GACGCTTTGGTGTCTTCTCG 59.215 55.000 2.93 0.00 46.12 4.04
761 810 0.653636 TTGTTCGACGCTTTGGTGTC 59.346 50.000 0.00 0.00 46.14 3.67
762 811 1.088306 TTTGTTCGACGCTTTGGTGT 58.912 45.000 0.00 0.00 39.06 4.16
763 812 2.181426 TTTTGTTCGACGCTTTGGTG 57.819 45.000 0.00 0.00 0.00 4.17
764 813 4.759516 ATATTTTGTTCGACGCTTTGGT 57.240 36.364 0.00 0.00 0.00 3.67
765 814 9.103048 GATTATATATTTTGTTCGACGCTTTGG 57.897 33.333 0.00 0.00 0.00 3.28
766 815 9.864034 AGATTATATATTTTGTTCGACGCTTTG 57.136 29.630 0.00 0.00 0.00 2.77
769 818 8.861101 GCTAGATTATATATTTTGTTCGACGCT 58.139 33.333 0.00 0.00 0.00 5.07
770 819 8.644619 TGCTAGATTATATATTTTGTTCGACGC 58.355 33.333 0.00 0.00 0.00 5.19
836 885 4.142578 TGCGCTATCGGCTCAAAATAAAAA 60.143 37.500 9.73 0.00 39.13 1.94
837 886 3.375610 TGCGCTATCGGCTCAAAATAAAA 59.624 39.130 9.73 0.00 39.13 1.52
838 887 2.939756 TGCGCTATCGGCTCAAAATAAA 59.060 40.909 9.73 0.00 39.13 1.40
839 888 2.556257 TGCGCTATCGGCTCAAAATAA 58.444 42.857 9.73 0.00 39.13 1.40
840 889 2.232756 TGCGCTATCGGCTCAAAATA 57.767 45.000 9.73 0.00 39.13 1.40
841 890 1.532868 GATGCGCTATCGGCTCAAAAT 59.467 47.619 9.73 0.00 39.21 1.82
842 891 0.937304 GATGCGCTATCGGCTCAAAA 59.063 50.000 9.73 0.00 39.21 2.44
843 892 0.104855 AGATGCGCTATCGGCTCAAA 59.895 50.000 9.73 0.00 39.21 2.69
844 893 0.598419 CAGATGCGCTATCGGCTCAA 60.598 55.000 9.73 0.00 39.21 3.02
845 894 1.006922 CAGATGCGCTATCGGCTCA 60.007 57.895 9.73 0.00 40.86 4.26
846 895 1.735920 CCAGATGCGCTATCGGCTC 60.736 63.158 9.73 0.00 40.86 4.70
847 896 2.341543 CCAGATGCGCTATCGGCT 59.658 61.111 9.73 0.00 40.86 5.52
848 897 3.418068 GCCAGATGCGCTATCGGC 61.418 66.667 23.98 23.98 43.18 5.54
880 929 3.479269 GTTGTTCCCGAGCGAGCG 61.479 66.667 0.00 0.00 0.00 5.03
881 930 3.479269 CGTTGTTCCCGAGCGAGC 61.479 66.667 0.00 0.00 0.00 5.03
882 931 2.809601 CCGTTGTTCCCGAGCGAG 60.810 66.667 0.00 0.00 0.00 5.03
885 934 2.746277 ATGCCGTTGTTCCCGAGC 60.746 61.111 0.00 0.00 0.00 5.03
886 935 2.452813 CGATGCCGTTGTTCCCGAG 61.453 63.158 0.00 0.00 0.00 4.63
887 936 2.433491 CGATGCCGTTGTTCCCGA 60.433 61.111 0.00 0.00 0.00 5.14
888 937 4.160635 GCGATGCCGTTGTTCCCG 62.161 66.667 0.00 0.00 38.24 5.14
889 938 4.160635 CGCGATGCCGTTGTTCCC 62.161 66.667 0.00 0.00 38.24 3.97
890 939 4.811761 GCGCGATGCCGTTGTTCC 62.812 66.667 12.10 0.00 37.76 3.62
905 954 4.633596 CTAGGAAATGCGCGCGCG 62.634 66.667 45.73 45.73 45.51 6.86
906 955 4.945433 GCTAGGAAATGCGCGCGC 62.945 66.667 45.02 45.02 42.35 6.86
907 956 3.563088 TGCTAGGAAATGCGCGCG 61.563 61.111 28.44 28.44 0.00 6.86
908 957 2.023320 GTGCTAGGAAATGCGCGC 59.977 61.111 27.26 27.26 0.00 6.86
909 958 1.638467 GAGTGCTAGGAAATGCGCG 59.362 57.895 0.00 0.00 43.55 6.86
910 959 1.638467 CGAGTGCTAGGAAATGCGC 59.362 57.895 0.00 0.00 39.68 6.09
911 960 1.766143 GCCGAGTGCTAGGAAATGCG 61.766 60.000 2.48 0.00 36.87 4.73
912 961 1.440145 GGCCGAGTGCTAGGAAATGC 61.440 60.000 2.48 0.00 40.92 3.56
913 962 0.179000 AGGCCGAGTGCTAGGAAATG 59.821 55.000 0.00 0.00 40.92 2.32
914 963 0.466124 GAGGCCGAGTGCTAGGAAAT 59.534 55.000 0.00 0.00 40.92 2.17
915 964 0.614979 AGAGGCCGAGTGCTAGGAAA 60.615 55.000 0.00 0.00 40.92 3.13
916 965 1.000486 AGAGGCCGAGTGCTAGGAA 60.000 57.895 0.00 0.00 40.92 3.36
917 966 1.454111 GAGAGGCCGAGTGCTAGGA 60.454 63.158 0.00 0.00 40.92 2.94
918 967 2.494530 GGAGAGGCCGAGTGCTAGG 61.495 68.421 0.00 0.00 40.92 3.02
919 968 1.452145 GAGGAGAGGCCGAGTGCTAG 61.452 65.000 0.00 0.00 43.43 3.42
920 969 1.454111 GAGGAGAGGCCGAGTGCTA 60.454 63.158 0.00 0.00 43.43 3.49
921 970 2.757917 GAGGAGAGGCCGAGTGCT 60.758 66.667 0.00 0.00 43.43 4.40
922 971 3.844090 GGAGGAGAGGCCGAGTGC 61.844 72.222 0.00 0.00 43.43 4.40
923 972 2.043450 AGGAGGAGAGGCCGAGTG 60.043 66.667 0.00 0.00 43.43 3.51
924 973 2.277404 GAGGAGGAGAGGCCGAGT 59.723 66.667 0.00 0.00 43.43 4.18
925 974 1.528309 GAGAGGAGGAGAGGCCGAG 60.528 68.421 0.00 0.00 43.43 4.63
926 975 1.990160 GAGAGAGGAGGAGAGGCCGA 61.990 65.000 0.00 0.00 43.43 5.54
927 976 1.528309 GAGAGAGGAGGAGAGGCCG 60.528 68.421 0.00 0.00 43.43 6.13
928 977 0.261696 AAGAGAGAGGAGGAGAGGCC 59.738 60.000 0.00 0.00 0.00 5.19
929 978 2.031870 GAAAGAGAGAGGAGGAGAGGC 58.968 57.143 0.00 0.00 0.00 4.70
930 979 3.023832 GTGAAAGAGAGAGGAGGAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
931 980 3.696051 CAGTGAAAGAGAGAGGAGGAGAG 59.304 52.174 0.00 0.00 0.00 3.20
932 981 3.563261 CCAGTGAAAGAGAGAGGAGGAGA 60.563 52.174 0.00 0.00 0.00 3.71
933 982 2.760092 CCAGTGAAAGAGAGAGGAGGAG 59.240 54.545 0.00 0.00 0.00 3.69
934 983 2.110899 ACCAGTGAAAGAGAGAGGAGGA 59.889 50.000 0.00 0.00 0.00 3.71
935 984 2.495669 GACCAGTGAAAGAGAGAGGAGG 59.504 54.545 0.00 0.00 0.00 4.30
936 985 3.161067 TGACCAGTGAAAGAGAGAGGAG 58.839 50.000 0.00 0.00 0.00 3.69
937 986 3.244887 TGACCAGTGAAAGAGAGAGGA 57.755 47.619 0.00 0.00 0.00 3.71
938 987 3.864160 GCTTGACCAGTGAAAGAGAGAGG 60.864 52.174 0.00 0.00 0.00 3.69
939 988 3.324993 GCTTGACCAGTGAAAGAGAGAG 58.675 50.000 0.00 0.00 0.00 3.20
940 989 2.288457 CGCTTGACCAGTGAAAGAGAGA 60.288 50.000 0.00 0.00 34.56 3.10
941 990 2.064762 CGCTTGACCAGTGAAAGAGAG 58.935 52.381 0.00 0.00 34.56 3.20
942 991 1.270305 CCGCTTGACCAGTGAAAGAGA 60.270 52.381 0.00 0.00 34.56 3.10
943 992 1.151668 CCGCTTGACCAGTGAAAGAG 58.848 55.000 0.00 0.00 34.56 2.85
944 993 0.884704 GCCGCTTGACCAGTGAAAGA 60.885 55.000 0.00 0.00 34.56 2.52
945 994 1.576421 GCCGCTTGACCAGTGAAAG 59.424 57.895 0.00 0.00 34.56 2.62
946 995 1.896660 GGCCGCTTGACCAGTGAAA 60.897 57.895 0.00 0.00 34.56 2.69
947 996 2.281484 GGCCGCTTGACCAGTGAA 60.281 61.111 0.00 0.00 34.56 3.18
948 997 4.329545 GGGCCGCTTGACCAGTGA 62.330 66.667 0.00 0.00 34.56 3.41
949 998 4.641645 TGGGCCGCTTGACCAGTG 62.642 66.667 0.00 0.00 0.00 3.66
950 999 4.335647 CTGGGCCGCTTGACCAGT 62.336 66.667 15.16 0.00 45.21 4.00
965 1014 4.619320 TTTGGGTGGGCTGGGCTG 62.619 66.667 0.00 0.00 0.00 4.85
966 1015 3.843800 TTTTGGGTGGGCTGGGCT 61.844 61.111 0.00 0.00 0.00 5.19
967 1016 3.625897 GTTTTGGGTGGGCTGGGC 61.626 66.667 0.00 0.00 0.00 5.36
968 1017 2.922503 GGTTTTGGGTGGGCTGGG 60.923 66.667 0.00 0.00 0.00 4.45
969 1018 1.536174 ATGGTTTTGGGTGGGCTGG 60.536 57.895 0.00 0.00 0.00 4.85
970 1019 1.543944 GGATGGTTTTGGGTGGGCTG 61.544 60.000 0.00 0.00 0.00 4.85
971 1020 1.229177 GGATGGTTTTGGGTGGGCT 60.229 57.895 0.00 0.00 0.00 5.19
972 1021 1.535202 TGGATGGTTTTGGGTGGGC 60.535 57.895 0.00 0.00 0.00 5.36
973 1022 0.470833 TGTGGATGGTTTTGGGTGGG 60.471 55.000 0.00 0.00 0.00 4.61
974 1023 1.418334 TTGTGGATGGTTTTGGGTGG 58.582 50.000 0.00 0.00 0.00 4.61
975 1024 2.484594 GGTTTGTGGATGGTTTTGGGTG 60.485 50.000 0.00 0.00 0.00 4.61
976 1025 1.765904 GGTTTGTGGATGGTTTTGGGT 59.234 47.619 0.00 0.00 0.00 4.51
977 1026 1.765314 TGGTTTGTGGATGGTTTTGGG 59.235 47.619 0.00 0.00 0.00 4.12
978 1027 2.801342 CGTGGTTTGTGGATGGTTTTGG 60.801 50.000 0.00 0.00 0.00 3.28
979 1028 2.099921 TCGTGGTTTGTGGATGGTTTTG 59.900 45.455 0.00 0.00 0.00 2.44
980 1029 2.379972 TCGTGGTTTGTGGATGGTTTT 58.620 42.857 0.00 0.00 0.00 2.43
981 1030 2.060050 TCGTGGTTTGTGGATGGTTT 57.940 45.000 0.00 0.00 0.00 3.27
982 1031 1.885887 CATCGTGGTTTGTGGATGGTT 59.114 47.619 0.00 0.00 34.16 3.67
983 1032 1.533625 CATCGTGGTTTGTGGATGGT 58.466 50.000 0.00 0.00 34.16 3.55
984 1033 0.171007 GCATCGTGGTTTGTGGATGG 59.829 55.000 2.51 0.00 37.38 3.51
985 1034 1.131126 GAGCATCGTGGTTTGTGGATG 59.869 52.381 0.00 0.00 39.35 3.51
990 1039 1.512926 GACTGAGCATCGTGGTTTGT 58.487 50.000 0.00 0.00 38.61 2.83
1006 1055 3.566853 CATTGCGGCGATGCGACT 61.567 61.111 16.77 0.00 37.81 4.18
1074 1126 0.970937 TGGACTTGGAGGAGTAGCCG 60.971 60.000 0.00 0.00 43.43 5.52
1101 1153 4.399395 CGCTGCTGCTTCTGGGGA 62.399 66.667 14.03 0.00 36.97 4.81
1947 2002 1.370778 CGTGGTACGCTTGTCGACA 60.371 57.895 15.76 15.76 41.67 4.35
2001 2056 5.613358 ACTCTTTAATCTTCTTTGGCACG 57.387 39.130 0.00 0.00 0.00 5.34
2106 2161 9.713713 GAATCTAAAAGCTCCCCTTTATAGTAG 57.286 37.037 0.00 0.00 42.82 2.57
2262 2317 1.956869 TCTCCCTCAATTCTGCTCCA 58.043 50.000 0.00 0.00 0.00 3.86
2519 2574 8.788806 ACCTCAGAATATAACACTCTCTTATCG 58.211 37.037 0.00 0.00 0.00 2.92
2567 2622 5.361571 TCATAGTGTCCGCAAGTTTAGGATA 59.638 40.000 0.00 0.00 36.34 2.59
2568 2623 4.161565 TCATAGTGTCCGCAAGTTTAGGAT 59.838 41.667 0.00 0.00 36.34 3.24
2907 2982 1.691196 TGAAGCCAAACAACAGAGGG 58.309 50.000 0.00 0.00 0.00 4.30
3031 3112 2.094182 AGCTGCCTGCATGAAAATTCTG 60.094 45.455 0.00 0.00 45.94 3.02
3032 3113 2.165845 GAGCTGCCTGCATGAAAATTCT 59.834 45.455 0.00 0.00 45.94 2.40
3079 3160 0.879400 CTGACGCCCTCATCATGAGC 60.879 60.000 9.41 0.00 42.98 4.26
3086 3167 2.359900 GATGTTTTCTGACGCCCTCAT 58.640 47.619 0.00 0.00 0.00 2.90
3133 3216 3.119531 TGTGTTCAAGCACTGACCAAAAG 60.120 43.478 0.00 0.00 39.89 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.