Multiple sequence alignment - TraesCS5D01G319700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G319700 chr5D 100.000 2897 0 0 1 2897 412351093 412353989 0.000000e+00 5350.0
1 TraesCS5D01G319700 chr5D 95.249 421 20 0 1 421 409543455 409543035 0.000000e+00 667.0
2 TraesCS5D01G319700 chr5D 82.203 118 19 2 2365 2481 446752687 446752803 1.840000e-17 100.0
3 TraesCS5D01G319700 chr5B 94.671 1839 63 14 543 2361 496484661 496486484 0.000000e+00 2820.0
4 TraesCS5D01G319700 chr5B 89.041 438 30 14 2472 2897 496486653 496487084 7.110000e-146 527.0
5 TraesCS5D01G319700 chr5B 87.441 422 53 0 1 422 694386241 694386662 1.210000e-133 486.0
6 TraesCS5D01G319700 chr5B 84.561 421 62 3 6 423 441109369 441109789 5.780000e-112 414.0
7 TraesCS5D01G319700 chr5A 94.260 1812 81 12 543 2338 524217032 524218836 0.000000e+00 2748.0
8 TraesCS5D01G319700 chr5A 91.946 447 26 5 2458 2897 524219267 524219710 4.100000e-173 617.0
9 TraesCS5D01G319700 chr5A 89.381 113 12 0 2370 2482 524218950 524219062 3.010000e-30 143.0
10 TraesCS5D01G319700 chr7A 92.299 896 63 2 1000 1889 731962430 731963325 0.000000e+00 1267.0
11 TraesCS5D01G319700 chr7A 87.838 74 9 0 2377 2450 50272969 50272896 1.430000e-13 87.9
12 TraesCS5D01G319700 chr7A 86.957 69 5 2 481 547 580482878 580482944 1.110000e-09 75.0
13 TraesCS5D01G319700 chr7A 85.075 67 8 2 481 547 27969707 27969771 1.860000e-07 67.6
14 TraesCS5D01G319700 chr7D 90.789 912 66 10 1000 1893 634412144 634411233 0.000000e+00 1203.0
15 TraesCS5D01G319700 chr7D 89.573 422 44 0 1 422 118817761 118818182 1.180000e-148 536.0
16 TraesCS5D01G319700 chr7D 86.607 112 11 3 2371 2480 20623079 20622970 1.410000e-23 121.0
17 TraesCS5D01G319700 chr7B 90.656 899 75 5 1000 1892 741719260 741718365 0.000000e+00 1186.0
18 TraesCS5D01G319700 chr7B 86.998 423 54 1 1 423 476596302 476595881 2.610000e-130 475.0
19 TraesCS5D01G319700 chr7B 86.635 419 56 0 3 421 23982549 23982131 5.650000e-127 464.0
20 TraesCS5D01G319700 chr1A 89.151 424 42 3 1 424 458212080 458212499 2.560000e-145 525.0
21 TraesCS5D01G319700 chr4A 86.651 427 53 2 3 427 696736395 696736819 1.220000e-128 470.0
22 TraesCS5D01G319700 chr2D 80.660 424 76 6 3 423 637347305 637347725 1.000000e-84 324.0
23 TraesCS5D01G319700 chr2D 75.718 383 78 13 39 415 528626168 528625795 8.250000e-41 178.0
24 TraesCS5D01G319700 chr2D 91.429 70 6 0 477 546 438007367 438007436 2.380000e-16 97.1
25 TraesCS5D01G319700 chr6B 94.203 69 4 0 477 545 221400012 221400080 3.950000e-19 106.0
26 TraesCS5D01G319700 chr6B 90.625 64 6 0 482 545 540572268 540572205 5.140000e-13 86.1
27 TraesCS5D01G319700 chr6B 90.625 64 6 0 482 545 560207650 560207713 5.140000e-13 86.1
28 TraesCS5D01G319700 chr2A 93.651 63 4 0 481 543 758450906 758450968 8.550000e-16 95.3
29 TraesCS5D01G319700 chr2A 88.889 63 7 0 481 543 758471988 758472050 8.610000e-11 78.7
30 TraesCS5D01G319700 chr2A 75.000 168 32 9 1318 1480 737341462 737341300 5.180000e-08 69.4
31 TraesCS5D01G319700 chr2B 90.909 66 6 0 481 546 153215323 153215258 3.980000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G319700 chr5D 412351093 412353989 2896 False 5350.000000 5350 100.000000 1 2897 1 chr5D.!!$F1 2896
1 TraesCS5D01G319700 chr5B 496484661 496487084 2423 False 1673.500000 2820 91.856000 543 2897 2 chr5B.!!$F3 2354
2 TraesCS5D01G319700 chr5A 524217032 524219710 2678 False 1169.333333 2748 91.862333 543 2897 3 chr5A.!!$F1 2354
3 TraesCS5D01G319700 chr7A 731962430 731963325 895 False 1267.000000 1267 92.299000 1000 1889 1 chr7A.!!$F3 889
4 TraesCS5D01G319700 chr7D 634411233 634412144 911 True 1203.000000 1203 90.789000 1000 1893 1 chr7D.!!$R2 893
5 TraesCS5D01G319700 chr7B 741718365 741719260 895 True 1186.000000 1186 90.656000 1000 1892 1 chr7B.!!$R3 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.03831 TGTCGCTTCCTCCTCAGAGA 59.962 55.0 0.0 0.0 43.39 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2152 1.308998 ACCACAGCTAACAACTGCAC 58.691 50.0 0.0 0.0 38.79 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.633668 CTCGATCACGTTTAGTCTCAAATT 57.366 37.500 0.00 0.00 40.69 1.82
24 25 6.627690 TCGATCACGTTTAGTCTCAAATTC 57.372 37.500 0.00 0.00 40.69 2.17
25 26 6.153756 TCGATCACGTTTAGTCTCAAATTCA 58.846 36.000 0.00 0.00 40.69 2.57
26 27 6.308041 TCGATCACGTTTAGTCTCAAATTCAG 59.692 38.462 0.00 0.00 40.69 3.02
27 28 5.591643 TCACGTTTAGTCTCAAATTCAGC 57.408 39.130 0.00 0.00 0.00 4.26
28 29 5.053811 TCACGTTTAGTCTCAAATTCAGCA 58.946 37.500 0.00 0.00 0.00 4.41
29 30 5.177511 TCACGTTTAGTCTCAAATTCAGCAG 59.822 40.000 0.00 0.00 0.00 4.24
30 31 4.083802 ACGTTTAGTCTCAAATTCAGCAGC 60.084 41.667 0.00 0.00 0.00 5.25
31 32 4.083855 CGTTTAGTCTCAAATTCAGCAGCA 60.084 41.667 0.00 0.00 0.00 4.41
32 33 5.560760 CGTTTAGTCTCAAATTCAGCAGCAA 60.561 40.000 0.00 0.00 0.00 3.91
33 34 6.208644 GTTTAGTCTCAAATTCAGCAGCAAA 58.791 36.000 0.00 0.00 0.00 3.68
34 35 4.234530 AGTCTCAAATTCAGCAGCAAAC 57.765 40.909 0.00 0.00 0.00 2.93
35 36 3.633525 AGTCTCAAATTCAGCAGCAAACA 59.366 39.130 0.00 0.00 0.00 2.83
36 37 4.280174 AGTCTCAAATTCAGCAGCAAACAT 59.720 37.500 0.00 0.00 0.00 2.71
37 38 4.384846 GTCTCAAATTCAGCAGCAAACATG 59.615 41.667 0.00 0.00 0.00 3.21
38 39 4.038282 TCTCAAATTCAGCAGCAAACATGT 59.962 37.500 0.00 0.00 0.00 3.21
39 40 4.695396 TCAAATTCAGCAGCAAACATGTT 58.305 34.783 4.92 4.92 0.00 2.71
40 41 4.746115 TCAAATTCAGCAGCAAACATGTTC 59.254 37.500 12.39 0.00 0.00 3.18
41 42 4.595762 AATTCAGCAGCAAACATGTTCT 57.404 36.364 12.39 2.47 0.00 3.01
42 43 3.631145 TTCAGCAGCAAACATGTTCTC 57.369 42.857 12.39 6.73 0.00 2.87
43 44 2.854963 TCAGCAGCAAACATGTTCTCT 58.145 42.857 12.39 9.01 0.00 3.10
44 45 2.810274 TCAGCAGCAAACATGTTCTCTC 59.190 45.455 12.39 6.50 0.00 3.20
45 46 2.095364 CAGCAGCAAACATGTTCTCTCC 60.095 50.000 12.39 2.31 0.00 3.71
46 47 1.200948 GCAGCAAACATGTTCTCTCCC 59.799 52.381 12.39 2.31 0.00 4.30
47 48 2.507484 CAGCAAACATGTTCTCTCCCA 58.493 47.619 12.39 0.00 0.00 4.37
48 49 2.486982 CAGCAAACATGTTCTCTCCCAG 59.513 50.000 12.39 0.00 0.00 4.45
49 50 1.815003 GCAAACATGTTCTCTCCCAGG 59.185 52.381 12.39 0.00 0.00 4.45
50 51 2.440409 CAAACATGTTCTCTCCCAGGG 58.560 52.381 12.39 0.00 0.00 4.45
51 52 0.995024 AACATGTTCTCTCCCAGGGG 59.005 55.000 4.92 0.92 0.00 4.79
52 53 0.119155 ACATGTTCTCTCCCAGGGGA 59.881 55.000 5.33 6.92 42.90 4.81
53 54 0.543749 CATGTTCTCTCCCAGGGGAC 59.456 60.000 5.33 0.00 39.76 4.46
54 55 0.978146 ATGTTCTCTCCCAGGGGACG 60.978 60.000 5.33 0.32 39.76 4.79
55 56 1.305046 GTTCTCTCCCAGGGGACGA 60.305 63.158 5.33 4.82 39.76 4.20
56 57 0.903454 GTTCTCTCCCAGGGGACGAA 60.903 60.000 5.33 6.60 39.76 3.85
57 58 0.178915 TTCTCTCCCAGGGGACGAAA 60.179 55.000 5.33 0.00 39.76 3.46
58 59 0.178915 TCTCTCCCAGGGGACGAAAA 60.179 55.000 5.33 0.00 39.76 2.29
59 60 0.690762 CTCTCCCAGGGGACGAAAAA 59.309 55.000 5.33 0.00 39.76 1.94
60 61 0.399075 TCTCCCAGGGGACGAAAAAC 59.601 55.000 5.33 0.00 39.76 2.43
61 62 0.608308 CTCCCAGGGGACGAAAAACC 60.608 60.000 5.33 0.00 39.76 3.27
62 63 1.151908 CCCAGGGGACGAAAAACCA 59.848 57.895 0.00 0.00 37.50 3.67
63 64 0.893727 CCCAGGGGACGAAAAACCAG 60.894 60.000 0.00 0.00 37.50 4.00
64 65 0.893727 CCAGGGGACGAAAAACCAGG 60.894 60.000 0.00 0.00 0.00 4.45
65 66 1.228459 AGGGGACGAAAAACCAGGC 60.228 57.895 0.00 0.00 0.00 4.85
66 67 2.273179 GGGGACGAAAAACCAGGCC 61.273 63.158 0.00 0.00 0.00 5.19
67 68 1.228459 GGGACGAAAAACCAGGCCT 60.228 57.895 0.00 0.00 0.00 5.19
68 69 1.241990 GGGACGAAAAACCAGGCCTC 61.242 60.000 0.00 0.00 0.00 4.70
69 70 0.250770 GGACGAAAAACCAGGCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
70 71 1.002773 GGACGAAAAACCAGGCCTCTA 59.997 52.381 0.00 0.00 0.00 2.43
71 72 2.347731 GACGAAAAACCAGGCCTCTAG 58.652 52.381 0.00 0.00 0.00 2.43
72 73 1.003233 ACGAAAAACCAGGCCTCTAGG 59.997 52.381 0.00 3.54 38.53 3.02
73 74 1.679032 CGAAAAACCAGGCCTCTAGGG 60.679 57.143 0.00 3.07 35.18 3.53
74 75 1.354705 GAAAAACCAGGCCTCTAGGGT 59.645 52.381 0.00 3.92 37.43 4.34
75 76 1.456919 AAAACCAGGCCTCTAGGGTT 58.543 50.000 17.45 17.45 45.13 4.11
76 77 1.456919 AAACCAGGCCTCTAGGGTTT 58.543 50.000 25.19 25.19 45.98 3.27
77 78 0.992695 AACCAGGCCTCTAGGGTTTC 59.007 55.000 17.45 0.00 40.59 2.78
78 79 0.914902 ACCAGGCCTCTAGGGTTTCC 60.915 60.000 0.00 0.00 37.43 3.13
79 80 1.636769 CCAGGCCTCTAGGGTTTCCC 61.637 65.000 0.00 0.00 45.90 3.97
106 107 4.131376 CGGAGCGCATTGGAGATT 57.869 55.556 11.47 0.00 0.00 2.40
107 108 1.645455 CGGAGCGCATTGGAGATTG 59.355 57.895 11.47 0.00 0.00 2.67
108 109 1.091771 CGGAGCGCATTGGAGATTGT 61.092 55.000 11.47 0.00 0.00 2.71
109 110 0.379669 GGAGCGCATTGGAGATTGTG 59.620 55.000 11.47 0.00 0.00 3.33
110 111 1.089920 GAGCGCATTGGAGATTGTGT 58.910 50.000 11.47 0.00 0.00 3.72
111 112 0.806868 AGCGCATTGGAGATTGTGTG 59.193 50.000 11.47 0.00 0.00 3.82
112 113 0.523072 GCGCATTGGAGATTGTGTGT 59.477 50.000 0.30 0.00 0.00 3.72
113 114 1.737236 GCGCATTGGAGATTGTGTGTA 59.263 47.619 0.30 0.00 0.00 2.90
114 115 2.355756 GCGCATTGGAGATTGTGTGTAT 59.644 45.455 0.30 0.00 0.00 2.29
115 116 3.789791 GCGCATTGGAGATTGTGTGTATG 60.790 47.826 0.30 0.00 0.00 2.39
116 117 3.374988 CGCATTGGAGATTGTGTGTATGT 59.625 43.478 0.00 0.00 0.00 2.29
117 118 4.665212 GCATTGGAGATTGTGTGTATGTG 58.335 43.478 0.00 0.00 0.00 3.21
118 119 4.395854 GCATTGGAGATTGTGTGTATGTGA 59.604 41.667 0.00 0.00 0.00 3.58
119 120 5.066893 GCATTGGAGATTGTGTGTATGTGAT 59.933 40.000 0.00 0.00 0.00 3.06
120 121 6.260714 GCATTGGAGATTGTGTGTATGTGATA 59.739 38.462 0.00 0.00 0.00 2.15
121 122 7.633621 CATTGGAGATTGTGTGTATGTGATAC 58.366 38.462 0.00 0.00 36.29 2.24
122 123 6.293004 TGGAGATTGTGTGTATGTGATACA 57.707 37.500 0.00 0.00 43.06 2.29
123 124 6.340522 TGGAGATTGTGTGTATGTGATACAG 58.659 40.000 0.00 0.00 45.62 2.74
124 125 6.154363 TGGAGATTGTGTGTATGTGATACAGA 59.846 38.462 0.00 0.00 45.62 3.41
125 126 7.147672 TGGAGATTGTGTGTATGTGATACAGAT 60.148 37.037 0.00 0.00 45.62 2.90
126 127 7.712639 GGAGATTGTGTGTATGTGATACAGATT 59.287 37.037 0.00 0.00 45.62 2.40
127 128 9.102757 GAGATTGTGTGTATGTGATACAGATTT 57.897 33.333 0.00 0.00 45.62 2.17
128 129 9.102757 AGATTGTGTGTATGTGATACAGATTTC 57.897 33.333 0.00 0.00 45.62 2.17
129 130 9.102757 GATTGTGTGTATGTGATACAGATTTCT 57.897 33.333 0.00 0.00 45.62 2.52
130 131 7.832503 TGTGTGTATGTGATACAGATTTCTG 57.167 36.000 6.03 6.03 45.62 3.02
131 132 7.610865 TGTGTGTATGTGATACAGATTTCTGA 58.389 34.615 14.29 0.00 45.62 3.27
132 133 8.093927 TGTGTGTATGTGATACAGATTTCTGAA 58.906 33.333 14.29 0.00 45.62 3.02
133 134 9.102757 GTGTGTATGTGATACAGATTTCTGAAT 57.897 33.333 14.29 0.00 45.62 2.57
136 137 9.481340 TGTATGTGATACAGATTTCTGAATAGC 57.519 33.333 14.29 1.24 46.59 2.97
137 138 9.481340 GTATGTGATACAGATTTCTGAATAGCA 57.519 33.333 14.29 3.73 46.59 3.49
138 139 7.776933 TGTGATACAGATTTCTGAATAGCAC 57.223 36.000 14.29 14.53 46.59 4.40
139 140 6.763135 TGTGATACAGATTTCTGAATAGCACC 59.237 38.462 14.29 3.15 46.59 5.01
140 141 6.989169 GTGATACAGATTTCTGAATAGCACCT 59.011 38.462 14.29 0.00 46.59 4.00
141 142 7.497249 GTGATACAGATTTCTGAATAGCACCTT 59.503 37.037 14.29 0.00 46.59 3.50
142 143 7.496920 TGATACAGATTTCTGAATAGCACCTTG 59.503 37.037 14.29 0.00 46.59 3.61
143 144 4.397417 ACAGATTTCTGAATAGCACCTTGC 59.603 41.667 14.29 0.00 46.59 4.01
144 145 3.950395 AGATTTCTGAATAGCACCTTGCC 59.050 43.478 0.00 0.00 46.52 4.52
145 146 2.128771 TTCTGAATAGCACCTTGCCC 57.871 50.000 0.00 0.00 46.52 5.36
146 147 0.107703 TCTGAATAGCACCTTGCCCG 60.108 55.000 0.00 0.00 46.52 6.13
147 148 1.718757 CTGAATAGCACCTTGCCCGC 61.719 60.000 0.00 0.00 46.52 6.13
148 149 2.440247 AATAGCACCTTGCCCGCC 60.440 61.111 0.00 0.00 46.52 6.13
149 150 3.280938 AATAGCACCTTGCCCGCCA 62.281 57.895 0.00 0.00 46.52 5.69
150 151 3.704231 ATAGCACCTTGCCCGCCAG 62.704 63.158 0.00 0.00 46.52 4.85
153 154 3.058160 CACCTTGCCCGCCAGAAG 61.058 66.667 0.00 0.00 0.00 2.85
160 161 2.747855 CCCGCCAGAAGCCACTTC 60.748 66.667 0.00 0.00 40.45 3.01
161 162 3.121030 CCGCCAGAAGCCACTTCG 61.121 66.667 1.90 0.00 44.34 3.79
162 163 3.121030 CGCCAGAAGCCACTTCGG 61.121 66.667 11.41 11.41 44.34 4.30
182 183 4.796231 GCGCACCATCGTCGGAGT 62.796 66.667 0.30 0.00 0.00 3.85
183 184 2.579787 CGCACCATCGTCGGAGTC 60.580 66.667 0.00 0.00 0.00 3.36
184 185 2.571757 GCACCATCGTCGGAGTCA 59.428 61.111 0.00 0.00 0.00 3.41
185 186 1.141881 GCACCATCGTCGGAGTCAT 59.858 57.895 0.00 0.00 0.00 3.06
186 187 0.872021 GCACCATCGTCGGAGTCATC 60.872 60.000 0.00 0.00 0.00 2.92
187 188 0.592500 CACCATCGTCGGAGTCATCG 60.593 60.000 0.00 0.00 0.00 3.84
188 189 0.746923 ACCATCGTCGGAGTCATCGA 60.747 55.000 0.00 0.00 36.77 3.59
189 190 0.593618 CCATCGTCGGAGTCATCGAT 59.406 55.000 0.00 0.00 42.44 3.59
190 191 1.400371 CCATCGTCGGAGTCATCGATC 60.400 57.143 0.00 0.00 40.29 3.69
191 192 1.264288 CATCGTCGGAGTCATCGATCA 59.736 52.381 0.00 0.00 40.29 2.92
192 193 0.656259 TCGTCGGAGTCATCGATCAC 59.344 55.000 0.00 0.00 38.93 3.06
193 194 0.317103 CGTCGGAGTCATCGATCACC 60.317 60.000 0.00 0.00 38.93 4.02
194 195 0.738975 GTCGGAGTCATCGATCACCA 59.261 55.000 0.00 0.00 38.93 4.17
195 196 1.025041 TCGGAGTCATCGATCACCAG 58.975 55.000 0.00 0.00 0.00 4.00
196 197 1.025041 CGGAGTCATCGATCACCAGA 58.975 55.000 0.00 0.00 0.00 3.86
197 198 1.001924 CGGAGTCATCGATCACCAGAG 60.002 57.143 0.00 0.00 0.00 3.35
198 199 1.339610 GGAGTCATCGATCACCAGAGG 59.660 57.143 0.00 0.00 0.00 3.69
199 200 2.028130 GAGTCATCGATCACCAGAGGT 58.972 52.381 0.00 0.00 35.62 3.85
208 209 3.060866 ACCAGAGGTGTCGCTTCC 58.939 61.111 0.00 0.00 32.98 3.46
209 210 1.534235 ACCAGAGGTGTCGCTTCCT 60.534 57.895 0.00 0.00 32.98 3.36
212 213 3.701454 GAGGTGTCGCTTCCTCCT 58.299 61.111 7.91 0.00 42.96 3.69
213 214 1.513622 GAGGTGTCGCTTCCTCCTC 59.486 63.158 7.91 0.00 42.96 3.71
214 215 1.228894 AGGTGTCGCTTCCTCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
215 216 1.216710 GGTGTCGCTTCCTCCTCAG 59.783 63.158 0.00 0.00 0.00 3.35
216 217 1.251527 GGTGTCGCTTCCTCCTCAGA 61.252 60.000 0.00 0.00 0.00 3.27
217 218 0.172352 GTGTCGCTTCCTCCTCAGAG 59.828 60.000 0.00 0.00 40.09 3.35
218 219 0.038310 TGTCGCTTCCTCCTCAGAGA 59.962 55.000 0.00 0.00 43.39 3.10
219 220 1.341482 TGTCGCTTCCTCCTCAGAGAT 60.341 52.381 0.00 0.00 43.39 2.75
220 221 2.092375 TGTCGCTTCCTCCTCAGAGATA 60.092 50.000 0.00 0.00 43.39 1.98
221 222 3.153919 GTCGCTTCCTCCTCAGAGATAT 58.846 50.000 0.00 0.00 43.39 1.63
222 223 3.190535 GTCGCTTCCTCCTCAGAGATATC 59.809 52.174 0.00 0.00 43.39 1.63
223 224 2.491693 CGCTTCCTCCTCAGAGATATCC 59.508 54.545 0.00 0.00 43.39 2.59
224 225 3.505386 GCTTCCTCCTCAGAGATATCCA 58.495 50.000 0.00 0.00 43.39 3.41
225 226 3.900601 GCTTCCTCCTCAGAGATATCCAA 59.099 47.826 0.00 0.00 43.39 3.53
226 227 4.262420 GCTTCCTCCTCAGAGATATCCAAC 60.262 50.000 0.00 0.00 43.39 3.77
227 228 4.823364 TCCTCCTCAGAGATATCCAACT 57.177 45.455 0.00 0.00 43.39 3.16
228 229 5.149584 TCCTCCTCAGAGATATCCAACTT 57.850 43.478 0.00 0.00 43.39 2.66
229 230 4.898265 TCCTCCTCAGAGATATCCAACTTG 59.102 45.833 0.00 0.00 43.39 3.16
230 231 4.502950 CCTCCTCAGAGATATCCAACTTGC 60.503 50.000 0.00 0.00 43.39 4.01
231 232 3.389329 TCCTCAGAGATATCCAACTTGCC 59.611 47.826 0.00 0.00 0.00 4.52
232 233 3.388308 CTCAGAGATATCCAACTTGCCG 58.612 50.000 0.00 0.00 0.00 5.69
233 234 3.031013 TCAGAGATATCCAACTTGCCGA 58.969 45.455 0.00 0.00 0.00 5.54
234 235 3.068732 TCAGAGATATCCAACTTGCCGAG 59.931 47.826 0.00 0.00 0.00 4.63
235 236 2.139118 GAGATATCCAACTTGCCGAGC 58.861 52.381 0.00 0.00 0.00 5.03
236 237 0.861837 GATATCCAACTTGCCGAGCG 59.138 55.000 0.00 0.00 0.00 5.03
237 238 1.160329 ATATCCAACTTGCCGAGCGC 61.160 55.000 0.00 0.00 38.31 5.92
240 241 3.793144 CAACTTGCCGAGCGCCTC 61.793 66.667 2.29 0.00 36.24 4.70
247 248 4.292178 CCGAGCGCCTCCTCCATC 62.292 72.222 2.29 0.00 0.00 3.51
248 249 3.222855 CGAGCGCCTCCTCCATCT 61.223 66.667 2.29 0.00 0.00 2.90
249 250 2.420890 GAGCGCCTCCTCCATCTG 59.579 66.667 2.29 0.00 0.00 2.90
250 251 3.805891 GAGCGCCTCCTCCATCTGC 62.806 68.421 2.29 0.00 0.00 4.26
253 254 4.925861 GCCTCCTCCATCTGCGCC 62.926 72.222 4.18 0.00 0.00 6.53
254 255 4.247380 CCTCCTCCATCTGCGCCC 62.247 72.222 4.18 0.00 0.00 6.13
255 256 4.598894 CTCCTCCATCTGCGCCCG 62.599 72.222 4.18 0.00 0.00 6.13
257 258 4.598894 CCTCCATCTGCGCCCGAG 62.599 72.222 4.18 2.01 0.00 4.63
261 262 4.519437 CATCTGCGCCCGAGCTGA 62.519 66.667 4.18 2.79 46.31 4.26
262 263 4.218578 ATCTGCGCCCGAGCTGAG 62.219 66.667 4.18 0.00 45.66 3.35
271 272 3.898509 CGAGCTGAGCGGGGAGAG 61.899 72.222 0.00 0.00 0.00 3.20
272 273 2.441164 GAGCTGAGCGGGGAGAGA 60.441 66.667 0.00 0.00 0.00 3.10
273 274 2.441901 AGCTGAGCGGGGAGAGAG 60.442 66.667 0.00 0.00 0.00 3.20
274 275 2.441164 GCTGAGCGGGGAGAGAGA 60.441 66.667 0.00 0.00 0.00 3.10
275 276 2.489275 GCTGAGCGGGGAGAGAGAG 61.489 68.421 0.00 0.00 0.00 3.20
276 277 2.441164 TGAGCGGGGAGAGAGAGC 60.441 66.667 0.00 0.00 0.00 4.09
277 278 3.591835 GAGCGGGGAGAGAGAGCG 61.592 72.222 0.00 0.00 0.00 5.03
282 283 3.894947 GGGAGAGAGAGCGCCGTC 61.895 72.222 2.29 0.00 0.00 4.79
283 284 2.826738 GGAGAGAGAGCGCCGTCT 60.827 66.667 2.29 6.24 0.00 4.18
284 285 2.713154 GAGAGAGAGCGCCGTCTC 59.287 66.667 23.00 23.00 43.03 3.36
285 286 2.826738 AGAGAGAGCGCCGTCTCC 60.827 66.667 25.47 15.94 43.64 3.71
286 287 2.826738 GAGAGAGCGCCGTCTCCT 60.827 66.667 20.87 10.53 43.64 3.69
287 288 2.826738 AGAGAGCGCCGTCTCCTC 60.827 66.667 19.73 10.22 43.64 3.71
288 289 4.244802 GAGAGCGCCGTCTCCTCG 62.245 72.222 14.14 0.00 37.59 4.63
293 294 4.838486 CGCCGTCTCCTCGCTGTC 62.838 72.222 0.00 0.00 0.00 3.51
294 295 4.500116 GCCGTCTCCTCGCTGTCC 62.500 72.222 0.00 0.00 0.00 4.02
295 296 4.180946 CCGTCTCCTCGCTGTCCG 62.181 72.222 0.00 0.00 38.61 4.79
296 297 3.432588 CGTCTCCTCGCTGTCCGT 61.433 66.667 0.00 0.00 38.35 4.69
297 298 2.963371 GTCTCCTCGCTGTCCGTT 59.037 61.111 0.00 0.00 38.35 4.44
298 299 1.153997 GTCTCCTCGCTGTCCGTTC 60.154 63.158 0.00 0.00 38.35 3.95
299 300 2.182030 CTCCTCGCTGTCCGTTCC 59.818 66.667 0.00 0.00 38.35 3.62
300 301 3.358076 CTCCTCGCTGTCCGTTCCC 62.358 68.421 0.00 0.00 38.35 3.97
301 302 3.691342 CCTCGCTGTCCGTTCCCA 61.691 66.667 0.00 0.00 38.35 4.37
302 303 2.125912 CTCGCTGTCCGTTCCCAG 60.126 66.667 0.00 0.00 38.35 4.45
319 320 2.202878 GCGGACGCTGAAGCCATA 60.203 61.111 9.76 0.00 37.91 2.74
320 321 2.240500 GCGGACGCTGAAGCCATAG 61.241 63.158 9.76 0.00 37.91 2.23
321 322 1.141881 CGGACGCTGAAGCCATAGT 59.858 57.895 0.00 0.00 37.91 2.12
322 323 0.872021 CGGACGCTGAAGCCATAGTC 60.872 60.000 0.00 0.00 37.91 2.59
323 324 0.530870 GGACGCTGAAGCCATAGTCC 60.531 60.000 10.17 10.17 39.64 3.85
324 325 0.530870 GACGCTGAAGCCATAGTCCC 60.531 60.000 0.00 0.00 37.91 4.46
325 326 1.264749 ACGCTGAAGCCATAGTCCCA 61.265 55.000 0.00 0.00 37.91 4.37
326 327 0.107703 CGCTGAAGCCATAGTCCCAA 60.108 55.000 0.00 0.00 37.91 4.12
327 328 1.678728 CGCTGAAGCCATAGTCCCAAA 60.679 52.381 0.00 0.00 37.91 3.28
328 329 2.019984 GCTGAAGCCATAGTCCCAAAG 58.980 52.381 0.00 0.00 34.31 2.77
329 330 2.356125 GCTGAAGCCATAGTCCCAAAGA 60.356 50.000 0.00 0.00 34.31 2.52
330 331 3.686691 GCTGAAGCCATAGTCCCAAAGAT 60.687 47.826 0.00 0.00 34.31 2.40
331 332 4.133078 CTGAAGCCATAGTCCCAAAGATC 58.867 47.826 0.00 0.00 0.00 2.75
332 333 2.918712 AGCCATAGTCCCAAAGATCG 57.081 50.000 0.00 0.00 0.00 3.69
333 334 1.202698 AGCCATAGTCCCAAAGATCGC 60.203 52.381 0.00 0.00 0.00 4.58
334 335 1.884235 CCATAGTCCCAAAGATCGCC 58.116 55.000 0.00 0.00 0.00 5.54
335 336 1.502231 CATAGTCCCAAAGATCGCCG 58.498 55.000 0.00 0.00 0.00 6.46
336 337 0.393077 ATAGTCCCAAAGATCGCCGG 59.607 55.000 0.00 0.00 0.00 6.13
337 338 0.974010 TAGTCCCAAAGATCGCCGGT 60.974 55.000 1.90 0.00 0.00 5.28
338 339 2.106683 GTCCCAAAGATCGCCGGTG 61.107 63.158 9.28 9.28 0.00 4.94
339 340 3.508840 CCCAAAGATCGCCGGTGC 61.509 66.667 11.05 0.00 0.00 5.01
357 358 3.620785 GCCCCGCCGATGAGATCT 61.621 66.667 0.00 0.00 0.00 2.75
358 359 2.341543 CCCCGCCGATGAGATCTG 59.658 66.667 0.00 0.00 0.00 2.90
359 360 2.356793 CCCGCCGATGAGATCTGC 60.357 66.667 0.00 0.00 36.34 4.26
362 363 2.356793 GCCGATGAGATCTGCGGG 60.357 66.667 22.41 10.90 43.73 6.13
363 364 2.356793 CCGATGAGATCTGCGGGC 60.357 66.667 16.53 0.00 40.08 6.13
364 365 2.732468 CGATGAGATCTGCGGGCG 60.732 66.667 0.00 0.00 0.00 6.13
365 366 3.040763 GATGAGATCTGCGGGCGC 61.041 66.667 0.00 0.00 42.35 6.53
380 381 3.733960 CGCAGTCGAGTCCACCGA 61.734 66.667 0.00 0.00 38.10 4.69
381 382 2.649034 GCAGTCGAGTCCACCGAA 59.351 61.111 0.00 0.00 37.81 4.30
382 383 1.733399 GCAGTCGAGTCCACCGAAC 60.733 63.158 0.00 0.00 37.81 3.95
383 384 1.080705 CAGTCGAGTCCACCGAACC 60.081 63.158 0.00 0.00 37.81 3.62
384 385 2.260743 GTCGAGTCCACCGAACCC 59.739 66.667 0.00 0.00 37.81 4.11
385 386 2.116772 TCGAGTCCACCGAACCCT 59.883 61.111 0.00 0.00 32.64 4.34
386 387 0.962356 GTCGAGTCCACCGAACCCTA 60.962 60.000 0.00 0.00 37.81 3.53
387 388 0.679002 TCGAGTCCACCGAACCCTAG 60.679 60.000 0.00 0.00 32.64 3.02
388 389 0.964358 CGAGTCCACCGAACCCTAGT 60.964 60.000 0.00 0.00 0.00 2.57
389 390 0.816373 GAGTCCACCGAACCCTAGTC 59.184 60.000 0.00 0.00 0.00 2.59
390 391 0.964358 AGTCCACCGAACCCTAGTCG 60.964 60.000 0.00 0.00 0.00 4.18
391 392 2.183555 CCACCGAACCCTAGTCGC 59.816 66.667 0.00 0.00 0.00 5.19
392 393 2.183555 CACCGAACCCTAGTCGCC 59.816 66.667 0.00 0.00 0.00 5.54
393 394 3.446570 ACCGAACCCTAGTCGCCG 61.447 66.667 0.00 0.00 0.00 6.46
394 395 4.867599 CCGAACCCTAGTCGCCGC 62.868 72.222 0.00 0.00 0.00 6.53
395 396 4.867599 CGAACCCTAGTCGCCGCC 62.868 72.222 0.00 0.00 0.00 6.13
396 397 3.766691 GAACCCTAGTCGCCGCCA 61.767 66.667 0.00 0.00 0.00 5.69
397 398 3.305177 GAACCCTAGTCGCCGCCAA 62.305 63.158 0.00 0.00 0.00 4.52
398 399 3.310860 AACCCTAGTCGCCGCCAAG 62.311 63.158 0.00 0.00 0.00 3.61
399 400 4.530857 CCCTAGTCGCCGCCAAGG 62.531 72.222 0.00 0.00 44.97 3.61
400 401 4.530857 CCTAGTCGCCGCCAAGGG 62.531 72.222 0.00 0.00 41.48 3.95
406 407 2.506962 CGCCGCCAAGGGGTATTA 59.493 61.111 2.34 0.00 46.82 0.98
407 408 1.597027 CGCCGCCAAGGGGTATTAG 60.597 63.158 2.34 0.00 46.82 1.73
408 409 1.228154 GCCGCCAAGGGGTATTAGG 60.228 63.158 2.34 0.00 41.48 2.69
409 410 1.454539 CCGCCAAGGGGTATTAGGG 59.545 63.158 2.34 0.00 36.17 3.53
410 411 1.350310 CCGCCAAGGGGTATTAGGGT 61.350 60.000 2.34 0.00 36.17 4.34
411 412 0.549469 CGCCAAGGGGTATTAGGGTT 59.451 55.000 0.00 0.00 36.17 4.11
412 413 1.064240 CGCCAAGGGGTATTAGGGTTT 60.064 52.381 0.00 0.00 36.17 3.27
413 414 2.662866 GCCAAGGGGTATTAGGGTTTC 58.337 52.381 0.00 0.00 36.17 2.78
414 415 2.927028 CCAAGGGGTATTAGGGTTTCG 58.073 52.381 0.00 0.00 0.00 3.46
415 416 2.506644 CCAAGGGGTATTAGGGTTTCGA 59.493 50.000 0.00 0.00 0.00 3.71
416 417 3.433173 CCAAGGGGTATTAGGGTTTCGAG 60.433 52.174 0.00 0.00 0.00 4.04
417 418 2.405559 AGGGGTATTAGGGTTTCGAGG 58.594 52.381 0.00 0.00 0.00 4.63
418 419 2.022722 AGGGGTATTAGGGTTTCGAGGA 60.023 50.000 0.00 0.00 0.00 3.71
419 420 2.773661 GGGGTATTAGGGTTTCGAGGAA 59.226 50.000 0.00 0.00 0.00 3.36
420 421 3.200605 GGGGTATTAGGGTTTCGAGGAAA 59.799 47.826 0.00 0.00 0.00 3.13
421 422 4.324486 GGGGTATTAGGGTTTCGAGGAAAA 60.324 45.833 0.00 0.00 33.14 2.29
422 423 5.255687 GGGTATTAGGGTTTCGAGGAAAAA 58.744 41.667 0.00 0.00 33.14 1.94
440 441 3.477210 AAAAGTTCCACTTCTCGCTCT 57.523 42.857 0.00 0.00 37.47 4.09
441 442 4.602340 AAAAGTTCCACTTCTCGCTCTA 57.398 40.909 0.00 0.00 37.47 2.43
442 443 4.602340 AAAGTTCCACTTCTCGCTCTAA 57.398 40.909 0.00 0.00 37.47 2.10
443 444 4.810191 AAGTTCCACTTCTCGCTCTAAT 57.190 40.909 0.00 0.00 31.77 1.73
444 445 5.916661 AAGTTCCACTTCTCGCTCTAATA 57.083 39.130 0.00 0.00 31.77 0.98
445 446 6.472686 AAGTTCCACTTCTCGCTCTAATAT 57.527 37.500 0.00 0.00 31.77 1.28
446 447 6.472686 AGTTCCACTTCTCGCTCTAATATT 57.527 37.500 0.00 0.00 0.00 1.28
447 448 6.276847 AGTTCCACTTCTCGCTCTAATATTG 58.723 40.000 0.00 0.00 0.00 1.90
448 449 6.096987 AGTTCCACTTCTCGCTCTAATATTGA 59.903 38.462 0.00 0.00 0.00 2.57
449 450 6.656632 TCCACTTCTCGCTCTAATATTGAT 57.343 37.500 0.00 0.00 0.00 2.57
450 451 7.055667 TCCACTTCTCGCTCTAATATTGATT 57.944 36.000 0.00 0.00 0.00 2.57
451 452 6.925718 TCCACTTCTCGCTCTAATATTGATTG 59.074 38.462 0.00 0.00 0.00 2.67
452 453 6.146837 CCACTTCTCGCTCTAATATTGATTGG 59.853 42.308 0.00 0.00 0.00 3.16
453 454 6.925718 CACTTCTCGCTCTAATATTGATTGGA 59.074 38.462 0.00 0.00 32.20 3.53
458 459 4.574527 CTCTAATATTGATTGGAGCGCG 57.425 45.455 0.00 0.00 41.88 6.86
459 460 3.990092 TCTAATATTGATTGGAGCGCGT 58.010 40.909 8.43 0.00 29.84 6.01
460 461 3.740832 TCTAATATTGATTGGAGCGCGTG 59.259 43.478 8.43 0.00 29.84 5.34
461 462 2.238942 ATATTGATTGGAGCGCGTGA 57.761 45.000 8.43 0.00 0.00 4.35
462 463 2.017138 TATTGATTGGAGCGCGTGAA 57.983 45.000 8.43 0.00 0.00 3.18
463 464 1.164411 ATTGATTGGAGCGCGTGAAA 58.836 45.000 8.43 0.00 0.00 2.69
464 465 0.947960 TTGATTGGAGCGCGTGAAAA 59.052 45.000 8.43 0.00 0.00 2.29
465 466 0.237235 TGATTGGAGCGCGTGAAAAC 59.763 50.000 8.43 0.00 0.00 2.43
466 467 0.789383 GATTGGAGCGCGTGAAAACG 60.789 55.000 8.43 0.00 0.00 3.60
467 468 1.503818 ATTGGAGCGCGTGAAAACGT 61.504 50.000 8.43 0.00 35.26 3.99
468 469 2.096481 TTGGAGCGCGTGAAAACGTC 62.096 55.000 8.43 0.00 35.26 4.34
469 470 2.170273 GAGCGCGTGAAAACGTCC 59.830 61.111 8.43 0.00 35.26 4.79
470 471 3.291167 GAGCGCGTGAAAACGTCCC 62.291 63.158 8.43 0.00 35.26 4.46
471 472 4.712873 GCGCGTGAAAACGTCCCG 62.713 66.667 8.43 0.00 35.26 5.14
472 473 3.332409 CGCGTGAAAACGTCCCGT 61.332 61.111 0.00 0.00 43.97 5.28
473 474 2.247267 GCGTGAAAACGTCCCGTG 59.753 61.111 0.00 0.00 39.99 4.94
474 475 2.247267 CGTGAAAACGTCCCGTGC 59.753 61.111 0.00 0.00 39.99 5.34
475 476 2.247267 GTGAAAACGTCCCGTGCG 59.753 61.111 0.00 0.00 39.99 5.34
476 477 3.641986 TGAAAACGTCCCGTGCGC 61.642 61.111 0.00 0.00 39.99 6.09
477 478 4.379143 GAAAACGTCCCGTGCGCC 62.379 66.667 4.18 0.00 39.99 6.53
492 493 2.944049 GCCGTGCGCGCTAAAATG 60.944 61.111 33.29 16.89 36.67 2.32
493 494 2.277247 CCGTGCGCGCTAAAATGG 60.277 61.111 33.29 22.11 36.67 3.16
494 495 2.944049 CGTGCGCGCTAAAATGGC 60.944 61.111 33.29 10.48 0.00 4.40
495 496 2.178025 GTGCGCGCTAAAATGGCA 59.822 55.556 33.29 5.03 0.00 4.92
496 497 1.869132 GTGCGCGCTAAAATGGCAG 60.869 57.895 33.29 0.00 33.77 4.85
497 498 2.331893 TGCGCGCTAAAATGGCAGT 61.332 52.632 33.29 0.00 0.00 4.40
498 499 1.154035 GCGCGCTAAAATGGCAGTT 60.154 52.632 26.67 0.00 0.00 3.16
499 500 0.732538 GCGCGCTAAAATGGCAGTTT 60.733 50.000 26.67 17.55 0.00 2.66
500 501 1.466697 GCGCGCTAAAATGGCAGTTTA 60.467 47.619 26.67 17.91 0.00 2.01
501 502 2.173964 CGCGCTAAAATGGCAGTTTAC 58.826 47.619 15.41 11.51 0.00 2.01
502 503 2.526077 GCGCTAAAATGGCAGTTTACC 58.474 47.619 15.41 9.03 0.00 2.85
503 504 2.780993 CGCTAAAATGGCAGTTTACCG 58.219 47.619 17.21 17.21 0.00 4.02
504 505 2.526077 GCTAAAATGGCAGTTTACCGC 58.474 47.619 15.41 14.28 0.00 5.68
505 506 2.094957 GCTAAAATGGCAGTTTACCGCA 60.095 45.455 19.99 3.88 0.00 5.69
506 507 2.432206 AAAATGGCAGTTTACCGCAC 57.568 45.000 11.68 0.00 0.00 5.34
507 508 1.323412 AAATGGCAGTTTACCGCACA 58.677 45.000 0.00 0.00 0.00 4.57
508 509 0.596082 AATGGCAGTTTACCGCACAC 59.404 50.000 0.00 0.00 0.00 3.82
509 510 1.573829 ATGGCAGTTTACCGCACACG 61.574 55.000 0.00 0.00 39.67 4.49
510 511 2.127383 GCAGTTTACCGCACACGC 60.127 61.111 0.00 0.00 38.22 5.34
520 521 2.656973 GCACACGCGGGGTTTTTG 60.657 61.111 15.46 1.48 0.00 2.44
521 522 2.656973 CACACGCGGGGTTTTTGC 60.657 61.111 15.46 0.00 0.00 3.68
522 523 3.906879 ACACGCGGGGTTTTTGCC 61.907 61.111 15.46 0.00 0.00 4.52
523 524 4.992294 CACGCGGGGTTTTTGCCG 62.992 66.667 12.47 0.00 0.00 5.69
530 531 4.279043 GGTTTTTGCCGCCGCTGT 62.279 61.111 0.00 0.00 35.36 4.40
531 532 2.279186 GTTTTTGCCGCCGCTGTT 60.279 55.556 0.00 0.00 35.36 3.16
532 533 2.279120 TTTTTGCCGCCGCTGTTG 60.279 55.556 0.00 0.00 35.36 3.33
533 534 3.781770 TTTTTGCCGCCGCTGTTGG 62.782 57.895 0.00 0.00 35.36 3.77
538 539 3.197790 CCGCCGCTGTTGGAGATG 61.198 66.667 0.00 0.00 0.00 2.90
539 540 3.869272 CGCCGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
540 541 2.437359 GCCGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
541 542 2.467826 GCCGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
574 575 9.445786 TGATTTAAATGTTTCTCGAGACAAAAC 57.554 29.630 16.36 17.19 34.30 2.43
610 612 1.202440 TGATAATACCGTGGCCGACAC 60.202 52.381 0.00 0.00 46.78 3.67
895 906 4.141181 CCATCCTCCATTACCAATCTTCCA 60.141 45.833 0.00 0.00 0.00 3.53
904 920 0.471617 CCAATCTTCCATCGCCTCCT 59.528 55.000 0.00 0.00 0.00 3.69
915 931 0.898320 TCGCCTCCTCTTCCTTCAAG 59.102 55.000 0.00 0.00 0.00 3.02
926 942 4.521146 TCTTCCTTCAAGCATCATCTTCC 58.479 43.478 0.00 0.00 31.26 3.46
935 951 6.299141 TCAAGCATCATCTTCCCCTATAAAC 58.701 40.000 0.00 0.00 0.00 2.01
961 978 1.301401 CGACCCAAGAACCGAGCAA 60.301 57.895 0.00 0.00 0.00 3.91
1959 2008 1.066858 ACTGCACACCTACCTTGATCG 60.067 52.381 0.00 0.00 0.00 3.69
2014 2067 1.958579 CATGCCATACACCATTGGAGG 59.041 52.381 10.37 3.62 34.81 4.30
2015 2068 0.998928 TGCCATACACCATTGGAGGT 59.001 50.000 10.37 9.63 44.48 3.85
2016 2069 2.200955 TGCCATACACCATTGGAGGTA 58.799 47.619 10.37 11.52 40.77 3.08
2017 2070 2.172505 TGCCATACACCATTGGAGGTAG 59.827 50.000 10.37 2.66 40.77 3.18
2042 2095 0.456312 GGCGTCAGATCGAGAAACGT 60.456 55.000 12.09 0.00 43.13 3.99
2060 2113 1.609932 GTGCGTTCACGATCGAGTAA 58.390 50.000 24.34 9.67 43.02 2.24
2098 2152 1.312815 GATTTCCTTCCATCTGCGGG 58.687 55.000 0.00 0.00 0.00 6.13
2112 2166 1.966451 GCGGGTGCAGTTGTTAGCT 60.966 57.895 0.00 0.00 42.15 3.32
2139 2193 0.035152 TAGCTCCATGGTTGCTGGTG 60.035 55.000 30.76 4.93 37.62 4.17
2185 2239 9.830975 TGTATCATGCAAACTATATGTTGTACT 57.169 29.630 0.00 0.00 39.13 2.73
2254 2312 6.183360 GCCTTTCTATTGTGTGGCTCATAATT 60.183 38.462 15.08 2.72 38.48 1.40
2263 2321 7.129457 TGTGTGGCTCATAATTAGAGAGATT 57.871 36.000 17.40 0.00 35.09 2.40
2265 2323 7.712639 TGTGTGGCTCATAATTAGAGAGATTTC 59.287 37.037 17.40 7.97 35.09 2.17
2306 2364 7.494298 GCGGATAATGTGGGATTTATTTGTTTT 59.506 33.333 0.00 0.00 0.00 2.43
2317 2375 7.068955 GGATTTATTTGTTTTGTTTGAAGCGG 58.931 34.615 0.00 0.00 0.00 5.52
2344 2450 8.839310 AATACCAGTGATGAATATAAGCACTC 57.161 34.615 6.32 0.00 37.69 3.51
2366 2472 6.095440 ACTCGCTACTTGCATATTTTTGGAAT 59.905 34.615 0.00 0.00 43.06 3.01
2373 2479 2.874086 GCATATTTTTGGAATGCAGGCC 59.126 45.455 0.00 0.00 44.27 5.19
2385 2491 0.912006 TGCAGGCCATAGTGGTGGTA 60.912 55.000 5.01 0.00 40.46 3.25
2386 2492 0.254747 GCAGGCCATAGTGGTGGTAA 59.745 55.000 5.01 0.00 40.46 2.85
2433 2573 5.583854 AGACTAGCAAACATGATGATGTGAC 59.416 40.000 0.00 0.00 42.30 3.67
2435 2575 5.706833 ACTAGCAAACATGATGATGTGACAA 59.293 36.000 0.00 0.00 42.30 3.18
2437 2577 5.224888 AGCAAACATGATGATGTGACAAAC 58.775 37.500 0.00 0.00 42.30 2.93
2443 2583 8.975410 AACATGATGATGTGACAAACAATTAG 57.025 30.769 0.00 0.00 42.30 1.73
2444 2584 8.339344 ACATGATGATGTGACAAACAATTAGA 57.661 30.769 0.00 0.00 43.61 2.10
2452 2592 6.943981 TGTGACAAACAATTAGAGAAGAACG 58.056 36.000 0.00 0.00 35.24 3.95
2468 2608 7.612633 AGAGAAGAACGAGAAGGTTAGAGTAAT 59.387 37.037 0.00 0.00 0.00 1.89
2469 2609 8.804912 AGAAGAACGAGAAGGTTAGAGTAATA 57.195 34.615 0.00 0.00 0.00 0.98
2473 2613 9.287373 AGAACGAGAAGGTTAGAGTAATATAGG 57.713 37.037 0.00 0.00 0.00 2.57
2535 3000 2.872245 CGTCCATCGGCTTCAACATTAT 59.128 45.455 0.00 0.00 35.71 1.28
2537 3002 4.509970 CGTCCATCGGCTTCAACATTATTA 59.490 41.667 0.00 0.00 35.71 0.98
2538 3003 5.333339 CGTCCATCGGCTTCAACATTATTAG 60.333 44.000 0.00 0.00 35.71 1.73
2539 3004 5.527582 GTCCATCGGCTTCAACATTATTAGT 59.472 40.000 0.00 0.00 0.00 2.24
2542 3007 6.038161 CCATCGGCTTCAACATTATTAGTTCA 59.962 38.462 0.00 0.00 0.00 3.18
2612 3084 5.388111 CATGTGTGTTCTGCAGTTTCTATG 58.612 41.667 14.67 7.52 0.00 2.23
2721 3193 1.068055 CAGTGAACTGCCTGCCATTTC 60.068 52.381 0.00 0.00 37.15 2.17
2794 3268 1.004277 GCCCCATGAACTGTACCTTGA 59.996 52.381 0.00 0.00 0.00 3.02
2850 3326 4.813296 GGAACGAGATTCAACAACTTGT 57.187 40.909 0.00 0.00 39.30 3.16
2886 3362 2.051076 TGCGTGTGACGTACGTCC 60.051 61.111 37.57 29.30 44.73 4.79
2892 3368 1.128507 GTGTGACGTACGTCCGATGTA 59.871 52.381 37.57 20.46 43.97 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.308041 TGAATTTGAGACTAAACGTGATCGAG 59.692 38.462 0.00 0.00 40.62 4.04
1 2 6.153756 TGAATTTGAGACTAAACGTGATCGA 58.846 36.000 0.00 0.00 40.62 3.59
2 3 6.389622 TGAATTTGAGACTAAACGTGATCG 57.610 37.500 0.00 0.00 43.34 3.69
3 4 6.128553 TGCTGAATTTGAGACTAAACGTGATC 60.129 38.462 0.00 0.00 0.00 2.92
4 5 5.700832 TGCTGAATTTGAGACTAAACGTGAT 59.299 36.000 0.00 0.00 0.00 3.06
5 6 5.053811 TGCTGAATTTGAGACTAAACGTGA 58.946 37.500 0.00 0.00 0.00 4.35
6 7 5.342806 TGCTGAATTTGAGACTAAACGTG 57.657 39.130 0.00 0.00 0.00 4.49
7 8 4.083802 GCTGCTGAATTTGAGACTAAACGT 60.084 41.667 0.00 0.00 0.00 3.99
8 9 4.083855 TGCTGCTGAATTTGAGACTAAACG 60.084 41.667 0.00 0.00 0.00 3.60
9 10 5.362556 TGCTGCTGAATTTGAGACTAAAC 57.637 39.130 0.00 0.00 0.00 2.01
10 11 6.183360 TGTTTGCTGCTGAATTTGAGACTAAA 60.183 34.615 0.00 0.00 0.00 1.85
11 12 5.299028 TGTTTGCTGCTGAATTTGAGACTAA 59.701 36.000 0.00 0.00 0.00 2.24
12 13 4.821260 TGTTTGCTGCTGAATTTGAGACTA 59.179 37.500 0.00 0.00 0.00 2.59
13 14 3.633525 TGTTTGCTGCTGAATTTGAGACT 59.366 39.130 0.00 0.00 0.00 3.24
14 15 3.968649 TGTTTGCTGCTGAATTTGAGAC 58.031 40.909 0.00 0.00 0.00 3.36
15 16 4.038282 ACATGTTTGCTGCTGAATTTGAGA 59.962 37.500 0.00 0.00 0.00 3.27
16 17 4.304110 ACATGTTTGCTGCTGAATTTGAG 58.696 39.130 0.00 0.00 0.00 3.02
17 18 4.325028 ACATGTTTGCTGCTGAATTTGA 57.675 36.364 0.00 0.00 0.00 2.69
18 19 4.748102 AGAACATGTTTGCTGCTGAATTTG 59.252 37.500 13.36 1.57 0.00 2.32
19 20 4.952460 AGAACATGTTTGCTGCTGAATTT 58.048 34.783 13.36 0.00 0.00 1.82
20 21 4.280174 AGAGAACATGTTTGCTGCTGAATT 59.720 37.500 13.36 0.00 0.00 2.17
21 22 3.825014 AGAGAACATGTTTGCTGCTGAAT 59.175 39.130 13.36 0.00 0.00 2.57
22 23 3.216800 AGAGAACATGTTTGCTGCTGAA 58.783 40.909 13.36 0.00 0.00 3.02
23 24 2.810274 GAGAGAACATGTTTGCTGCTGA 59.190 45.455 13.36 0.00 0.00 4.26
24 25 2.095364 GGAGAGAACATGTTTGCTGCTG 60.095 50.000 13.36 0.00 0.00 4.41
25 26 2.157738 GGAGAGAACATGTTTGCTGCT 58.842 47.619 13.36 4.39 0.00 4.24
26 27 1.200948 GGGAGAGAACATGTTTGCTGC 59.799 52.381 13.36 16.58 0.00 5.25
27 28 2.486982 CTGGGAGAGAACATGTTTGCTG 59.513 50.000 13.36 0.00 0.00 4.41
28 29 2.553904 CCTGGGAGAGAACATGTTTGCT 60.554 50.000 13.36 12.73 0.00 3.91
29 30 1.815003 CCTGGGAGAGAACATGTTTGC 59.185 52.381 13.36 7.96 0.00 3.68
30 31 2.440409 CCCTGGGAGAGAACATGTTTG 58.560 52.381 13.36 0.00 0.00 2.93
31 32 1.355720 CCCCTGGGAGAGAACATGTTT 59.644 52.381 16.20 2.74 37.50 2.83
32 33 0.995024 CCCCTGGGAGAGAACATGTT 59.005 55.000 16.20 11.78 37.50 2.71
33 34 0.119155 TCCCCTGGGAGAGAACATGT 59.881 55.000 16.20 0.00 39.76 3.21
34 35 0.543749 GTCCCCTGGGAGAGAACATG 59.456 60.000 16.20 0.00 46.16 3.21
35 36 0.978146 CGTCCCCTGGGAGAGAACAT 60.978 60.000 16.20 0.00 46.16 2.71
36 37 1.609501 CGTCCCCTGGGAGAGAACA 60.610 63.158 16.20 0.00 46.16 3.18
37 38 0.903454 TTCGTCCCCTGGGAGAGAAC 60.903 60.000 16.20 3.36 46.16 3.01
38 39 0.178915 TTTCGTCCCCTGGGAGAGAA 60.179 55.000 16.20 12.94 46.16 2.87
39 40 0.178915 TTTTCGTCCCCTGGGAGAGA 60.179 55.000 16.20 7.11 46.16 3.10
40 41 0.690762 TTTTTCGTCCCCTGGGAGAG 59.309 55.000 16.20 4.56 46.16 3.20
41 42 0.399075 GTTTTTCGTCCCCTGGGAGA 59.601 55.000 16.20 7.09 46.16 3.71
42 43 0.608308 GGTTTTTCGTCCCCTGGGAG 60.608 60.000 16.20 4.42 46.16 4.30
43 44 1.354168 TGGTTTTTCGTCCCCTGGGA 61.354 55.000 16.20 3.95 42.90 4.37
44 45 0.893727 CTGGTTTTTCGTCCCCTGGG 60.894 60.000 5.50 5.50 0.00 4.45
45 46 0.893727 CCTGGTTTTTCGTCCCCTGG 60.894 60.000 0.00 0.00 0.00 4.45
46 47 1.524008 GCCTGGTTTTTCGTCCCCTG 61.524 60.000 0.00 0.00 0.00 4.45
47 48 1.228459 GCCTGGTTTTTCGTCCCCT 60.228 57.895 0.00 0.00 0.00 4.79
48 49 2.273179 GGCCTGGTTTTTCGTCCCC 61.273 63.158 0.00 0.00 0.00 4.81
49 50 1.228459 AGGCCTGGTTTTTCGTCCC 60.228 57.895 3.11 0.00 0.00 4.46
50 51 0.250770 AGAGGCCTGGTTTTTCGTCC 60.251 55.000 12.00 0.00 0.00 4.79
51 52 2.347731 CTAGAGGCCTGGTTTTTCGTC 58.652 52.381 12.00 0.00 0.00 4.20
52 53 1.003233 CCTAGAGGCCTGGTTTTTCGT 59.997 52.381 12.00 0.00 0.00 3.85
53 54 1.679032 CCCTAGAGGCCTGGTTTTTCG 60.679 57.143 12.00 0.00 0.00 3.46
54 55 1.354705 ACCCTAGAGGCCTGGTTTTTC 59.645 52.381 12.00 0.00 40.58 2.29
55 56 1.456919 ACCCTAGAGGCCTGGTTTTT 58.543 50.000 12.00 0.00 40.58 1.94
56 57 1.456919 AACCCTAGAGGCCTGGTTTT 58.543 50.000 12.00 0.00 37.84 2.43
57 58 1.456919 AAACCCTAGAGGCCTGGTTT 58.543 50.000 25.19 25.19 44.17 3.27
58 59 0.992695 GAAACCCTAGAGGCCTGGTT 59.007 55.000 12.00 15.56 42.73 3.67
59 60 0.914902 GGAAACCCTAGAGGCCTGGT 60.915 60.000 12.00 8.74 40.58 4.00
60 61 1.915983 GGAAACCCTAGAGGCCTGG 59.084 63.158 12.00 7.89 40.58 4.45
89 90 1.091771 ACAATCTCCAATGCGCTCCG 61.092 55.000 9.73 0.00 0.00 4.63
90 91 0.379669 CACAATCTCCAATGCGCTCC 59.620 55.000 9.73 0.00 0.00 4.70
91 92 1.089920 ACACAATCTCCAATGCGCTC 58.910 50.000 9.73 0.00 0.00 5.03
92 93 0.806868 CACACAATCTCCAATGCGCT 59.193 50.000 9.73 0.00 0.00 5.92
93 94 0.523072 ACACACAATCTCCAATGCGC 59.477 50.000 0.00 0.00 0.00 6.09
94 95 3.374988 ACATACACACAATCTCCAATGCG 59.625 43.478 0.00 0.00 0.00 4.73
95 96 4.395854 TCACATACACACAATCTCCAATGC 59.604 41.667 0.00 0.00 0.00 3.56
96 97 6.688637 ATCACATACACACAATCTCCAATG 57.311 37.500 0.00 0.00 0.00 2.82
97 98 7.337938 TGTATCACATACACACAATCTCCAAT 58.662 34.615 0.00 0.00 40.60 3.16
98 99 6.706295 TGTATCACATACACACAATCTCCAA 58.294 36.000 0.00 0.00 40.60 3.53
99 100 6.154363 TCTGTATCACATACACACAATCTCCA 59.846 38.462 0.00 0.00 40.60 3.86
100 101 6.573434 TCTGTATCACATACACACAATCTCC 58.427 40.000 0.00 0.00 40.60 3.71
101 102 8.654230 AATCTGTATCACATACACACAATCTC 57.346 34.615 0.00 0.00 40.60 2.75
102 103 9.102757 GAAATCTGTATCACATACACACAATCT 57.897 33.333 0.00 0.00 40.60 2.40
103 104 9.102757 AGAAATCTGTATCACATACACACAATC 57.897 33.333 0.00 0.00 40.60 2.67
104 105 8.886719 CAGAAATCTGTATCACATACACACAAT 58.113 33.333 2.18 0.00 40.60 2.71
105 106 8.093927 TCAGAAATCTGTATCACATACACACAA 58.906 33.333 10.06 0.00 44.12 3.33
106 107 7.610865 TCAGAAATCTGTATCACATACACACA 58.389 34.615 10.06 0.00 44.12 3.72
107 108 8.479313 TTCAGAAATCTGTATCACATACACAC 57.521 34.615 10.06 0.00 44.12 3.82
110 111 9.481340 GCTATTCAGAAATCTGTATCACATACA 57.519 33.333 10.06 0.00 44.12 2.29
111 112 9.481340 TGCTATTCAGAAATCTGTATCACATAC 57.519 33.333 10.06 0.00 44.12 2.39
112 113 9.481340 GTGCTATTCAGAAATCTGTATCACATA 57.519 33.333 10.06 0.04 44.12 2.29
113 114 7.443575 GGTGCTATTCAGAAATCTGTATCACAT 59.556 37.037 16.43 4.86 44.12 3.21
114 115 6.763135 GGTGCTATTCAGAAATCTGTATCACA 59.237 38.462 16.43 10.20 44.12 3.58
115 116 6.989169 AGGTGCTATTCAGAAATCTGTATCAC 59.011 38.462 10.06 10.43 44.12 3.06
116 117 7.129457 AGGTGCTATTCAGAAATCTGTATCA 57.871 36.000 10.06 0.06 44.12 2.15
117 118 7.519649 GCAAGGTGCTATTCAGAAATCTGTATC 60.520 40.741 10.06 0.00 41.49 2.24
118 119 6.261826 GCAAGGTGCTATTCAGAAATCTGTAT 59.738 38.462 10.06 8.71 41.49 2.29
119 120 5.586243 GCAAGGTGCTATTCAGAAATCTGTA 59.414 40.000 10.06 1.37 41.49 2.74
120 121 4.397417 GCAAGGTGCTATTCAGAAATCTGT 59.603 41.667 10.06 0.00 41.49 3.41
121 122 4.201990 GGCAAGGTGCTATTCAGAAATCTG 60.202 45.833 3.99 3.99 44.28 2.90
122 123 3.950395 GGCAAGGTGCTATTCAGAAATCT 59.050 43.478 0.00 0.00 44.28 2.40
123 124 3.067320 GGGCAAGGTGCTATTCAGAAATC 59.933 47.826 0.00 0.00 44.28 2.17
124 125 3.026694 GGGCAAGGTGCTATTCAGAAAT 58.973 45.455 0.00 0.00 44.28 2.17
125 126 2.446435 GGGCAAGGTGCTATTCAGAAA 58.554 47.619 0.00 0.00 44.28 2.52
126 127 1.678728 CGGGCAAGGTGCTATTCAGAA 60.679 52.381 0.00 0.00 44.28 3.02
127 128 0.107703 CGGGCAAGGTGCTATTCAGA 60.108 55.000 0.00 0.00 44.28 3.27
128 129 1.718757 GCGGGCAAGGTGCTATTCAG 61.719 60.000 0.00 0.00 44.28 3.02
129 130 1.748879 GCGGGCAAGGTGCTATTCA 60.749 57.895 0.00 0.00 44.28 2.57
130 131 2.481471 GGCGGGCAAGGTGCTATTC 61.481 63.158 0.00 0.00 44.28 1.75
131 132 2.440247 GGCGGGCAAGGTGCTATT 60.440 61.111 0.00 0.00 44.28 1.73
132 133 3.704231 CTGGCGGGCAAGGTGCTAT 62.704 63.158 5.54 0.00 44.28 2.97
133 134 4.408821 CTGGCGGGCAAGGTGCTA 62.409 66.667 5.54 0.00 44.28 3.49
136 137 3.058160 CTTCTGGCGGGCAAGGTG 61.058 66.667 5.54 0.00 0.00 4.00
143 144 2.747855 GAAGTGGCTTCTGGCGGG 60.748 66.667 0.00 0.00 42.94 6.13
144 145 3.121030 CGAAGTGGCTTCTGGCGG 61.121 66.667 7.21 0.00 42.94 6.13
145 146 3.121030 CCGAAGTGGCTTCTGGCG 61.121 66.667 7.21 0.00 42.94 5.69
165 166 4.796231 ACTCCGACGATGGTGCGC 62.796 66.667 0.00 0.00 33.86 6.09
166 167 2.579787 GACTCCGACGATGGTGCG 60.580 66.667 0.00 0.00 37.29 5.34
167 168 0.872021 GATGACTCCGACGATGGTGC 60.872 60.000 0.00 0.00 0.00 5.01
168 169 0.592500 CGATGACTCCGACGATGGTG 60.593 60.000 0.00 0.00 0.00 4.17
169 170 0.746923 TCGATGACTCCGACGATGGT 60.747 55.000 0.00 0.00 0.00 3.55
170 171 0.593618 ATCGATGACTCCGACGATGG 59.406 55.000 0.00 0.00 42.46 3.51
171 172 1.264288 TGATCGATGACTCCGACGATG 59.736 52.381 0.54 0.00 43.72 3.84
172 173 1.264557 GTGATCGATGACTCCGACGAT 59.735 52.381 7.83 0.00 45.77 3.73
173 174 0.656259 GTGATCGATGACTCCGACGA 59.344 55.000 7.83 0.00 38.97 4.20
174 175 0.317103 GGTGATCGATGACTCCGACG 60.317 60.000 14.74 0.00 38.97 5.12
175 176 0.738975 TGGTGATCGATGACTCCGAC 59.261 55.000 14.74 0.00 38.97 4.79
176 177 1.025041 CTGGTGATCGATGACTCCGA 58.975 55.000 14.74 0.00 40.53 4.55
177 178 1.001924 CTCTGGTGATCGATGACTCCG 60.002 57.143 14.74 4.06 0.00 4.63
178 179 1.339610 CCTCTGGTGATCGATGACTCC 59.660 57.143 14.74 6.61 0.00 3.85
179 180 2.028130 ACCTCTGGTGATCGATGACTC 58.972 52.381 14.74 5.84 32.98 3.36
180 181 2.151502 ACCTCTGGTGATCGATGACT 57.848 50.000 14.74 0.00 32.98 3.41
191 192 1.534235 AGGAAGCGACACCTCTGGT 60.534 57.895 0.00 0.00 35.62 4.00
192 193 1.216710 GAGGAAGCGACACCTCTGG 59.783 63.158 12.64 0.00 46.28 3.86
193 194 4.900154 GAGGAAGCGACACCTCTG 57.100 61.111 12.64 0.00 46.28 3.35
196 197 1.228894 TGAGGAGGAAGCGACACCT 60.229 57.895 0.00 0.00 39.41 4.00
197 198 1.216710 CTGAGGAGGAAGCGACACC 59.783 63.158 0.00 0.00 0.00 4.16
198 199 0.172352 CTCTGAGGAGGAAGCGACAC 59.828 60.000 0.00 0.00 36.03 3.67
199 200 0.038310 TCTCTGAGGAGGAAGCGACA 59.962 55.000 4.59 0.00 39.86 4.35
200 201 1.398692 ATCTCTGAGGAGGAAGCGAC 58.601 55.000 4.59 0.00 39.86 5.19
201 202 3.417101 GATATCTCTGAGGAGGAAGCGA 58.583 50.000 4.59 0.00 39.86 4.93
202 203 2.491693 GGATATCTCTGAGGAGGAAGCG 59.508 54.545 4.59 0.00 39.86 4.68
203 204 3.505386 TGGATATCTCTGAGGAGGAAGC 58.495 50.000 4.59 0.00 39.86 3.86
204 205 5.147032 AGTTGGATATCTCTGAGGAGGAAG 58.853 45.833 4.59 0.00 39.86 3.46
205 206 5.149584 AGTTGGATATCTCTGAGGAGGAA 57.850 43.478 4.59 0.00 39.86 3.36
206 207 4.823364 AGTTGGATATCTCTGAGGAGGA 57.177 45.455 4.59 0.00 39.86 3.71
207 208 4.502950 GCAAGTTGGATATCTCTGAGGAGG 60.503 50.000 4.75 0.00 39.86 4.30
208 209 4.502950 GGCAAGTTGGATATCTCTGAGGAG 60.503 50.000 4.75 0.00 40.73 3.69
209 210 3.389329 GGCAAGTTGGATATCTCTGAGGA 59.611 47.826 4.75 0.00 0.00 3.71
210 211 3.737850 GGCAAGTTGGATATCTCTGAGG 58.262 50.000 4.75 0.00 0.00 3.86
211 212 3.068732 TCGGCAAGTTGGATATCTCTGAG 59.931 47.826 4.75 0.00 0.00 3.35
212 213 3.031013 TCGGCAAGTTGGATATCTCTGA 58.969 45.455 4.75 0.00 0.00 3.27
213 214 3.388308 CTCGGCAAGTTGGATATCTCTG 58.612 50.000 4.75 0.00 0.00 3.35
214 215 2.224161 GCTCGGCAAGTTGGATATCTCT 60.224 50.000 4.75 0.00 0.00 3.10
215 216 2.139118 GCTCGGCAAGTTGGATATCTC 58.861 52.381 4.75 0.00 0.00 2.75
216 217 1.539065 CGCTCGGCAAGTTGGATATCT 60.539 52.381 4.75 0.00 0.00 1.98
217 218 0.861837 CGCTCGGCAAGTTGGATATC 59.138 55.000 4.75 0.00 0.00 1.63
218 219 1.160329 GCGCTCGGCAAGTTGGATAT 61.160 55.000 0.00 0.00 42.87 1.63
219 220 1.813753 GCGCTCGGCAAGTTGGATA 60.814 57.895 0.00 0.00 42.87 2.59
220 221 3.127533 GCGCTCGGCAAGTTGGAT 61.128 61.111 0.00 0.00 42.87 3.41
223 224 3.793144 GAGGCGCTCGGCAAGTTG 61.793 66.667 17.74 0.00 46.16 3.16
230 231 4.292178 GATGGAGGAGGCGCTCGG 62.292 72.222 7.64 0.00 0.00 4.63
231 232 3.222855 AGATGGAGGAGGCGCTCG 61.223 66.667 7.64 0.00 0.00 5.03
232 233 2.420890 CAGATGGAGGAGGCGCTC 59.579 66.667 7.64 2.45 0.00 5.03
233 234 3.859414 GCAGATGGAGGAGGCGCT 61.859 66.667 7.64 0.00 0.00 5.92
236 237 4.925861 GGCGCAGATGGAGGAGGC 62.926 72.222 10.83 0.00 0.00 4.70
237 238 4.247380 GGGCGCAGATGGAGGAGG 62.247 72.222 10.83 0.00 0.00 4.30
238 239 4.598894 CGGGCGCAGATGGAGGAG 62.599 72.222 10.83 0.00 0.00 3.69
240 241 4.598894 CTCGGGCGCAGATGGAGG 62.599 72.222 10.83 0.00 0.00 4.30
244 245 4.519437 TCAGCTCGGGCGCAGATG 62.519 66.667 10.83 7.54 44.37 2.90
245 246 4.218578 CTCAGCTCGGGCGCAGAT 62.219 66.667 10.83 0.00 44.37 2.90
254 255 3.898509 CTCTCCCCGCTCAGCTCG 61.899 72.222 0.00 0.00 0.00 5.03
255 256 2.441164 TCTCTCCCCGCTCAGCTC 60.441 66.667 0.00 0.00 0.00 4.09
256 257 2.441901 CTCTCTCCCCGCTCAGCT 60.442 66.667 0.00 0.00 0.00 4.24
257 258 2.441164 TCTCTCTCCCCGCTCAGC 60.441 66.667 0.00 0.00 0.00 4.26
258 259 2.489275 GCTCTCTCTCCCCGCTCAG 61.489 68.421 0.00 0.00 0.00 3.35
259 260 2.441164 GCTCTCTCTCCCCGCTCA 60.441 66.667 0.00 0.00 0.00 4.26
260 261 3.591835 CGCTCTCTCTCCCCGCTC 61.592 72.222 0.00 0.00 0.00 5.03
265 266 3.894947 GACGGCGCTCTCTCTCCC 61.895 72.222 6.90 0.00 0.00 4.30
266 267 2.826738 AGACGGCGCTCTCTCTCC 60.827 66.667 6.90 0.00 0.00 3.71
267 268 2.713154 GAGACGGCGCTCTCTCTC 59.287 66.667 23.11 16.84 34.83 3.20
268 269 2.826738 GGAGACGGCGCTCTCTCT 60.827 66.667 26.57 15.54 37.44 3.10
269 270 2.826738 AGGAGACGGCGCTCTCTC 60.827 66.667 26.57 21.72 37.44 3.20
270 271 2.826738 GAGGAGACGGCGCTCTCT 60.827 66.667 26.57 21.16 37.44 3.10
271 272 4.244802 CGAGGAGACGGCGCTCTC 62.245 72.222 23.42 23.02 36.67 3.20
276 277 4.838486 GACAGCGAGGAGACGGCG 62.838 72.222 4.80 4.80 39.26 6.46
277 278 4.500116 GGACAGCGAGGAGACGGC 62.500 72.222 0.00 0.00 35.29 5.68
278 279 4.180946 CGGACAGCGAGGAGACGG 62.181 72.222 0.00 0.00 0.00 4.79
279 280 2.852431 GAACGGACAGCGAGGAGACG 62.852 65.000 0.00 0.00 0.00 4.18
280 281 1.153997 GAACGGACAGCGAGGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
281 282 2.341101 GGAACGGACAGCGAGGAGA 61.341 63.158 0.00 0.00 0.00 3.71
282 283 2.182030 GGAACGGACAGCGAGGAG 59.818 66.667 0.00 0.00 0.00 3.69
283 284 3.379445 GGGAACGGACAGCGAGGA 61.379 66.667 0.00 0.00 0.00 3.71
284 285 3.649277 CTGGGAACGGACAGCGAGG 62.649 68.421 0.00 0.00 39.98 4.63
285 286 2.125912 CTGGGAACGGACAGCGAG 60.126 66.667 0.00 0.00 39.98 5.03
302 303 2.202878 TATGGCTTCAGCGTCCGC 60.203 61.111 2.94 2.94 43.26 5.54
303 304 0.872021 GACTATGGCTTCAGCGTCCG 60.872 60.000 0.00 0.00 43.26 4.79
304 305 0.530870 GGACTATGGCTTCAGCGTCC 60.531 60.000 7.56 7.56 43.26 4.79
305 306 0.530870 GGGACTATGGCTTCAGCGTC 60.531 60.000 0.00 0.00 43.26 5.19
306 307 1.264749 TGGGACTATGGCTTCAGCGT 61.265 55.000 0.00 0.00 43.26 5.07
307 308 0.107703 TTGGGACTATGGCTTCAGCG 60.108 55.000 0.00 0.00 43.26 5.18
308 309 2.019984 CTTTGGGACTATGGCTTCAGC 58.980 52.381 0.00 0.00 41.14 4.26
309 310 3.634397 TCTTTGGGACTATGGCTTCAG 57.366 47.619 0.00 0.00 0.00 3.02
310 311 3.432186 CGATCTTTGGGACTATGGCTTCA 60.432 47.826 0.00 0.00 0.00 3.02
311 312 3.134458 CGATCTTTGGGACTATGGCTTC 58.866 50.000 0.00 0.00 0.00 3.86
312 313 2.746472 GCGATCTTTGGGACTATGGCTT 60.746 50.000 0.00 0.00 0.00 4.35
313 314 1.202698 GCGATCTTTGGGACTATGGCT 60.203 52.381 0.00 0.00 0.00 4.75
314 315 1.230324 GCGATCTTTGGGACTATGGC 58.770 55.000 0.00 0.00 0.00 4.40
315 316 1.873903 CGGCGATCTTTGGGACTATGG 60.874 57.143 0.00 0.00 0.00 2.74
316 317 1.502231 CGGCGATCTTTGGGACTATG 58.498 55.000 0.00 0.00 0.00 2.23
317 318 0.393077 CCGGCGATCTTTGGGACTAT 59.607 55.000 9.30 0.00 0.00 2.12
318 319 0.974010 ACCGGCGATCTTTGGGACTA 60.974 55.000 9.30 0.00 0.00 2.59
319 320 2.291043 ACCGGCGATCTTTGGGACT 61.291 57.895 9.30 0.00 0.00 3.85
320 321 2.106683 CACCGGCGATCTTTGGGAC 61.107 63.158 9.30 0.00 0.00 4.46
321 322 2.267642 CACCGGCGATCTTTGGGA 59.732 61.111 9.30 0.00 0.00 4.37
322 323 3.508840 GCACCGGCGATCTTTGGG 61.509 66.667 9.30 0.00 0.00 4.12
340 341 3.620785 AGATCTCATCGGCGGGGC 61.621 66.667 7.21 0.00 0.00 5.80
341 342 2.341543 CAGATCTCATCGGCGGGG 59.658 66.667 7.21 0.00 0.00 5.73
342 343 2.356793 GCAGATCTCATCGGCGGG 60.357 66.667 7.21 0.00 40.42 6.13
345 346 2.356793 CCCGCAGATCTCATCGGC 60.357 66.667 17.59 6.93 45.21 5.54
346 347 2.356793 GCCCGCAGATCTCATCGG 60.357 66.667 16.56 16.56 41.41 4.18
347 348 2.732468 CGCCCGCAGATCTCATCG 60.732 66.667 0.00 0.00 0.00 3.84
348 349 3.040763 GCGCCCGCAGATCTCATC 61.041 66.667 7.91 0.00 41.49 2.92
363 364 3.263503 TTCGGTGGACTCGACTGCG 62.264 63.158 0.00 0.00 36.30 5.18
364 365 1.733399 GTTCGGTGGACTCGACTGC 60.733 63.158 0.00 0.00 36.30 4.40
365 366 1.080705 GGTTCGGTGGACTCGACTG 60.081 63.158 0.00 0.00 36.30 3.51
366 367 2.273912 GGGTTCGGTGGACTCGACT 61.274 63.158 0.00 0.00 36.30 4.18
367 368 0.962356 TAGGGTTCGGTGGACTCGAC 60.962 60.000 0.00 0.00 36.30 4.20
368 369 0.679002 CTAGGGTTCGGTGGACTCGA 60.679 60.000 0.00 0.00 34.62 4.04
369 370 0.964358 ACTAGGGTTCGGTGGACTCG 60.964 60.000 0.00 0.00 0.00 4.18
370 371 0.816373 GACTAGGGTTCGGTGGACTC 59.184 60.000 0.00 0.00 0.00 3.36
371 372 0.964358 CGACTAGGGTTCGGTGGACT 60.964 60.000 0.00 0.00 0.00 3.85
372 373 1.509923 CGACTAGGGTTCGGTGGAC 59.490 63.158 0.00 0.00 0.00 4.02
373 374 2.345760 GCGACTAGGGTTCGGTGGA 61.346 63.158 3.74 0.00 0.00 4.02
374 375 2.183555 GCGACTAGGGTTCGGTGG 59.816 66.667 3.74 0.00 0.00 4.61
375 376 2.183555 GGCGACTAGGGTTCGGTG 59.816 66.667 3.74 0.00 0.00 4.94
376 377 3.446570 CGGCGACTAGGGTTCGGT 61.447 66.667 0.00 0.00 0.00 4.69
377 378 4.867599 GCGGCGACTAGGGTTCGG 62.868 72.222 12.98 0.00 0.00 4.30
378 379 4.867599 GGCGGCGACTAGGGTTCG 62.868 72.222 12.98 0.00 0.00 3.95
379 380 3.305177 TTGGCGGCGACTAGGGTTC 62.305 63.158 16.45 0.00 0.00 3.62
380 381 3.310860 CTTGGCGGCGACTAGGGTT 62.311 63.158 16.45 0.00 0.00 4.11
381 382 3.771160 CTTGGCGGCGACTAGGGT 61.771 66.667 16.45 0.00 0.00 4.34
382 383 4.530857 CCTTGGCGGCGACTAGGG 62.531 72.222 31.76 18.43 0.00 3.53
383 384 4.530857 CCCTTGGCGGCGACTAGG 62.531 72.222 32.30 32.30 0.00 3.02
384 385 4.530857 CCCCTTGGCGGCGACTAG 62.531 72.222 17.44 17.44 0.00 2.57
385 386 3.961225 TACCCCTTGGCGGCGACTA 62.961 63.158 16.45 5.16 33.59 2.59
387 388 2.314415 TAATACCCCTTGGCGGCGAC 62.314 60.000 12.98 9.31 33.59 5.19
388 389 2.035237 CTAATACCCCTTGGCGGCGA 62.035 60.000 12.98 0.14 33.59 5.54
389 390 1.597027 CTAATACCCCTTGGCGGCG 60.597 63.158 0.51 0.51 33.59 6.46
390 391 1.228154 CCTAATACCCCTTGGCGGC 60.228 63.158 0.00 0.00 33.59 6.53
391 392 1.350310 ACCCTAATACCCCTTGGCGG 61.350 60.000 0.00 0.00 33.59 6.13
392 393 0.549469 AACCCTAATACCCCTTGGCG 59.451 55.000 0.00 0.00 33.59 5.69
393 394 2.662866 GAAACCCTAATACCCCTTGGC 58.337 52.381 0.00 0.00 33.59 4.52
394 395 2.506644 TCGAAACCCTAATACCCCTTGG 59.493 50.000 0.00 0.00 37.80 3.61
395 396 3.433173 CCTCGAAACCCTAATACCCCTTG 60.433 52.174 0.00 0.00 0.00 3.61
396 397 2.775960 CCTCGAAACCCTAATACCCCTT 59.224 50.000 0.00 0.00 0.00 3.95
397 398 2.022722 TCCTCGAAACCCTAATACCCCT 60.023 50.000 0.00 0.00 0.00 4.79
398 399 2.401568 TCCTCGAAACCCTAATACCCC 58.598 52.381 0.00 0.00 0.00 4.95
399 400 4.492494 TTTCCTCGAAACCCTAATACCC 57.508 45.455 0.00 0.00 0.00 3.69
424 425 6.273825 TCAATATTAGAGCGAGAAGTGGAAC 58.726 40.000 0.00 0.00 0.00 3.62
425 426 6.465439 TCAATATTAGAGCGAGAAGTGGAA 57.535 37.500 0.00 0.00 0.00 3.53
426 427 6.656632 ATCAATATTAGAGCGAGAAGTGGA 57.343 37.500 0.00 0.00 0.00 4.02
427 428 6.146837 CCAATCAATATTAGAGCGAGAAGTGG 59.853 42.308 0.00 0.00 0.00 4.00
428 429 6.925718 TCCAATCAATATTAGAGCGAGAAGTG 59.074 38.462 0.00 0.00 0.00 3.16
429 430 7.055667 TCCAATCAATATTAGAGCGAGAAGT 57.944 36.000 0.00 0.00 0.00 3.01
430 431 6.090628 GCTCCAATCAATATTAGAGCGAGAAG 59.909 42.308 3.43 0.00 43.64 2.85
431 432 5.928839 GCTCCAATCAATATTAGAGCGAGAA 59.071 40.000 3.43 0.00 43.64 2.87
432 433 5.473931 GCTCCAATCAATATTAGAGCGAGA 58.526 41.667 3.43 0.00 43.64 4.04
433 434 5.776519 GCTCCAATCAATATTAGAGCGAG 57.223 43.478 3.43 3.57 43.64 5.03
436 437 3.181526 CGCGCTCCAATCAATATTAGAGC 60.182 47.826 5.56 8.03 46.89 4.09
437 438 3.990469 ACGCGCTCCAATCAATATTAGAG 59.010 43.478 5.73 0.00 34.90 2.43
438 439 3.740832 CACGCGCTCCAATCAATATTAGA 59.259 43.478 5.73 0.00 0.00 2.10
439 440 3.740832 TCACGCGCTCCAATCAATATTAG 59.259 43.478 5.73 0.00 0.00 1.73
440 441 3.723260 TCACGCGCTCCAATCAATATTA 58.277 40.909 5.73 0.00 0.00 0.98
441 442 2.560504 TCACGCGCTCCAATCAATATT 58.439 42.857 5.73 0.00 0.00 1.28
442 443 2.238942 TCACGCGCTCCAATCAATAT 57.761 45.000 5.73 0.00 0.00 1.28
443 444 2.017138 TTCACGCGCTCCAATCAATA 57.983 45.000 5.73 0.00 0.00 1.90
444 445 1.164411 TTTCACGCGCTCCAATCAAT 58.836 45.000 5.73 0.00 0.00 2.57
445 446 0.947960 TTTTCACGCGCTCCAATCAA 59.052 45.000 5.73 0.00 0.00 2.57
446 447 0.237235 GTTTTCACGCGCTCCAATCA 59.763 50.000 5.73 0.00 0.00 2.57
447 448 0.789383 CGTTTTCACGCGCTCCAATC 60.789 55.000 5.73 0.00 40.18 2.67
448 449 1.206578 CGTTTTCACGCGCTCCAAT 59.793 52.632 5.73 0.00 40.18 3.16
449 450 2.629210 CGTTTTCACGCGCTCCAA 59.371 55.556 5.73 0.00 40.18 3.53
475 476 2.944049 CATTTTAGCGCGCACGGC 60.944 61.111 35.10 2.36 40.57 5.68
476 477 2.277247 CCATTTTAGCGCGCACGG 60.277 61.111 35.10 18.90 40.57 4.94
477 478 2.944049 GCCATTTTAGCGCGCACG 60.944 61.111 35.10 13.78 44.07 5.34
478 479 1.869132 CTGCCATTTTAGCGCGCAC 60.869 57.895 35.10 11.76 0.00 5.34
479 480 1.861542 AACTGCCATTTTAGCGCGCA 61.862 50.000 35.10 16.82 0.00 6.09
480 481 0.732538 AAACTGCCATTTTAGCGCGC 60.733 50.000 26.66 26.66 0.00 6.86
481 482 2.173964 GTAAACTGCCATTTTAGCGCG 58.826 47.619 0.00 0.00 0.00 6.86
482 483 2.526077 GGTAAACTGCCATTTTAGCGC 58.474 47.619 0.00 0.00 29.87 5.92
484 485 2.526077 GCGGTAAACTGCCATTTTAGC 58.474 47.619 2.34 6.66 42.27 3.09
503 504 2.656973 CAAAAACCCCGCGTGTGC 60.657 61.111 4.92 0.00 37.91 4.57
504 505 2.656973 GCAAAAACCCCGCGTGTG 60.657 61.111 4.92 0.00 0.00 3.82
505 506 3.906879 GGCAAAAACCCCGCGTGT 61.907 61.111 4.92 0.00 0.00 4.49
506 507 4.992294 CGGCAAAAACCCCGCGTG 62.992 66.667 4.92 0.00 37.85 5.34
513 514 3.783478 AACAGCGGCGGCAAAAACC 62.783 57.895 19.21 0.00 43.41 3.27
514 515 2.279186 AACAGCGGCGGCAAAAAC 60.279 55.556 19.21 0.00 43.41 2.43
515 516 2.279120 CAACAGCGGCGGCAAAAA 60.279 55.556 19.21 0.00 43.41 1.94
516 517 4.277593 CCAACAGCGGCGGCAAAA 62.278 61.111 19.21 0.00 43.41 2.44
521 522 3.197790 CATCTCCAACAGCGGCGG 61.198 66.667 9.78 0.00 0.00 6.13
522 523 3.869272 GCATCTCCAACAGCGGCG 61.869 66.667 0.51 0.51 0.00 6.46
523 524 2.437359 AGCATCTCCAACAGCGGC 60.437 61.111 0.00 0.00 0.00 6.53
524 525 3.805267 GAGCATCTCCAACAGCGG 58.195 61.111 0.00 0.00 0.00 5.52
610 612 0.750546 TAGACGTCGTGAGGGATGGG 60.751 60.000 10.46 0.00 0.00 4.00
895 906 1.484240 CTTGAAGGAAGAGGAGGCGAT 59.516 52.381 0.00 0.00 32.82 4.58
904 920 4.521146 GGAAGATGATGCTTGAAGGAAGA 58.479 43.478 0.00 0.00 32.82 2.87
915 931 4.043435 AGGGTTTATAGGGGAAGATGATGC 59.957 45.833 0.00 0.00 0.00 3.91
926 942 2.364647 GGTCGTGAGAGGGTTTATAGGG 59.635 54.545 0.00 0.00 43.49 3.53
935 951 0.037232 GTTCTTGGGTCGTGAGAGGG 60.037 60.000 0.00 0.00 43.49 4.30
976 993 1.865340 GAAAGCTCGTCGGTTCTTGTT 59.135 47.619 0.00 0.00 31.82 2.83
978 995 1.784525 AGAAAGCTCGTCGGTTCTTG 58.215 50.000 0.00 0.00 31.82 3.02
1482 1529 4.710167 TCGTCGGCCTCGGTCAGA 62.710 66.667 15.20 0.00 36.95 3.27
1765 1812 2.047179 GAACCTGTCCTCCACCGC 60.047 66.667 0.00 0.00 0.00 5.68
1959 2008 1.445871 TCAGCATGCATGTGTGTCTC 58.554 50.000 26.79 9.16 34.76 3.36
2014 2067 3.961182 TCGATCTGACGCCATTAACTAC 58.039 45.455 0.00 0.00 0.00 2.73
2015 2068 3.881089 TCTCGATCTGACGCCATTAACTA 59.119 43.478 0.00 0.00 0.00 2.24
2016 2069 2.688446 TCTCGATCTGACGCCATTAACT 59.312 45.455 0.00 0.00 0.00 2.24
2017 2070 3.079960 TCTCGATCTGACGCCATTAAC 57.920 47.619 0.00 0.00 0.00 2.01
2042 2095 2.447250 GATTACTCGATCGTGAACGCA 58.553 47.619 22.80 0.00 39.60 5.24
2060 2113 3.981071 TCACACTGAATTTCTCCGGAT 57.019 42.857 3.57 0.00 0.00 4.18
2098 2152 1.308998 ACCACAGCTAACAACTGCAC 58.691 50.000 0.00 0.00 38.79 4.57
2112 2166 1.656587 ACCATGGAGCTAGAACCACA 58.343 50.000 21.47 0.00 39.06 4.17
2139 2193 2.618709 CAGGTTCCACTCTTGTTCAACC 59.381 50.000 0.00 0.00 36.35 3.77
2254 2312 3.489229 CCACGTGCATCGAAATCTCTCTA 60.489 47.826 10.91 0.00 42.86 2.43
2263 2321 4.260194 CACTCCACGTGCATCGAA 57.740 55.556 10.91 0.00 42.86 3.71
2306 2364 3.749088 CACTGGTATTACCGCTTCAAACA 59.251 43.478 8.32 0.00 42.58 2.83
2317 2375 9.712305 AGTGCTTATATTCATCACTGGTATTAC 57.288 33.333 0.00 0.00 36.72 1.89
2366 2472 0.912006 TACCACCACTATGGCCTGCA 60.912 55.000 3.32 0.00 44.33 4.41
2373 2479 3.454375 CGGCTAAGTTACCACCACTATG 58.546 50.000 0.00 0.00 0.00 2.23
2385 2491 3.492102 ATGCATGATACCGGCTAAGTT 57.508 42.857 0.00 0.00 0.00 2.66
2386 2492 3.181455 TGAATGCATGATACCGGCTAAGT 60.181 43.478 0.00 0.00 0.00 2.24
2433 2573 7.171678 ACCTTCTCGTTCTTCTCTAATTGTTTG 59.828 37.037 0.00 0.00 0.00 2.93
2435 2575 6.760291 ACCTTCTCGTTCTTCTCTAATTGTT 58.240 36.000 0.00 0.00 0.00 2.83
2437 2577 8.244802 TCTAACCTTCTCGTTCTTCTCTAATTG 58.755 37.037 0.00 0.00 0.00 2.32
2443 2583 5.632244 ACTCTAACCTTCTCGTTCTTCTC 57.368 43.478 0.00 0.00 0.00 2.87
2444 2584 7.706100 ATTACTCTAACCTTCTCGTTCTTCT 57.294 36.000 0.00 0.00 0.00 2.85
2535 3000 7.015877 AGGTACATGGACAAGTACTTGAACTAA 59.984 37.037 36.14 21.44 42.93 2.24
2537 3002 5.307196 AGGTACATGGACAAGTACTTGAACT 59.693 40.000 36.14 19.91 42.93 3.01
2538 3003 5.548406 AGGTACATGGACAAGTACTTGAAC 58.452 41.667 36.14 27.11 42.93 3.18
2539 3004 5.818678 AGGTACATGGACAAGTACTTGAA 57.181 39.130 36.14 22.70 42.93 2.69
2542 3007 6.435292 AGAAAGGTACATGGACAAGTACTT 57.565 37.500 10.99 1.12 40.26 2.24
2778 3252 3.748048 CCTGTGTCAAGGTACAGTTCATG 59.252 47.826 0.00 0.00 42.04 3.07
2779 3253 3.646162 TCCTGTGTCAAGGTACAGTTCAT 59.354 43.478 0.00 0.00 42.04 2.57
2780 3254 3.035363 TCCTGTGTCAAGGTACAGTTCA 58.965 45.455 0.00 0.00 42.04 3.18
2794 3268 3.498774 ATCAAAACTCAGCTCCTGTGT 57.501 42.857 0.00 0.00 39.43 3.72
2831 3305 6.685403 CGTTAAACAAGTTGTTGAATCTCGTT 59.315 34.615 21.53 5.61 40.14 3.85
2837 3311 7.531716 TGAACTCGTTAAACAAGTTGTTGAAT 58.468 30.769 21.53 9.13 40.14 2.57
2839 3313 6.483385 TGAACTCGTTAAACAAGTTGTTGA 57.517 33.333 21.53 11.98 40.14 3.18
2849 3325 3.958151 GCACGTTCTTGAACTCGTTAAAC 59.042 43.478 11.11 0.00 34.30 2.01
2850 3326 3.301963 CGCACGTTCTTGAACTCGTTAAA 60.302 43.478 11.11 0.00 34.30 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.