Multiple sequence alignment - TraesCS5D01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G319100 chr5D 100.000 2580 0 0 1 2580 412101778 412104357 0.000000e+00 4765.0
1 TraesCS5D01G319100 chr5D 99.180 122 1 0 705 826 412107943 412107822 1.200000e-53 220.0
2 TraesCS5D01G319100 chr3D 99.205 1132 8 1 705 1836 608433365 608432235 0.000000e+00 2039.0
3 TraesCS5D01G319100 chr3D 99.457 737 4 0 1844 2580 608432078 608431342 0.000000e+00 1339.0
4 TraesCS5D01G319100 chr3D 100.000 122 0 0 705 826 608427625 608427746 2.580000e-55 226.0
5 TraesCS5D01G319100 chr7B 83.779 1159 124 28 705 1825 36969785 36970917 0.000000e+00 1040.0
6 TraesCS5D01G319100 chr5B 89.722 467 11 11 1 448 495213420 495213868 1.730000e-156 562.0
7 TraesCS5D01G319100 chr5B 92.593 189 7 2 514 702 495218489 495218670 5.470000e-67 265.0
8 TraesCS5D01G319100 chr5A 84.436 257 10 9 52 308 523837323 523837549 2.580000e-55 226.0
9 TraesCS5D01G319100 chr5A 94.595 37 1 1 317 352 523837545 523837581 3.590000e-04 56.5
10 TraesCS5D01G319100 chr4D 83.249 197 32 1 2383 2579 459225850 459225655 2.040000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G319100 chr5D 412101778 412104357 2579 False 4765 4765 100.000 1 2580 1 chr5D.!!$F1 2579
1 TraesCS5D01G319100 chr3D 608431342 608433365 2023 True 1689 2039 99.331 705 2580 2 chr3D.!!$R1 1875
2 TraesCS5D01G319100 chr7B 36969785 36970917 1132 False 1040 1040 83.779 705 1825 1 chr7B.!!$F1 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.025513 GAGCATGACACGAACGCATC 59.974 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2165 1.239347 GGAGAGGAACAGCAACAACC 58.761 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.696084 GTACCAGCGGACAGGACT 58.304 61.111 1.50 0.00 0.00 3.85
18 19 1.215647 GTACCAGCGGACAGGACTG 59.784 63.158 0.00 0.00 0.00 3.51
20 21 1.532604 TACCAGCGGACAGGACTGTG 61.533 60.000 10.08 0.00 45.05 3.66
21 22 2.047844 CAGCGGACAGGACTGTGG 60.048 66.667 10.08 2.93 45.05 4.17
22 23 2.524394 AGCGGACAGGACTGTGGT 60.524 61.111 10.08 0.00 45.05 4.16
23 24 2.357517 GCGGACAGGACTGTGGTG 60.358 66.667 10.08 0.65 45.05 4.17
24 25 2.343758 CGGACAGGACTGTGGTGG 59.656 66.667 10.08 0.00 45.05 4.61
25 26 2.032681 GGACAGGACTGTGGTGGC 59.967 66.667 10.08 0.00 45.05 5.01
26 27 2.520536 GGACAGGACTGTGGTGGCT 61.521 63.158 10.08 0.00 45.05 4.75
27 28 1.004440 GACAGGACTGTGGTGGCTC 60.004 63.158 10.08 0.00 45.05 4.70
28 29 2.348998 CAGGACTGTGGTGGCTCC 59.651 66.667 0.00 0.00 0.00 4.70
29 30 3.314331 AGGACTGTGGTGGCTCCG 61.314 66.667 0.53 0.00 39.52 4.63
30 31 3.311110 GGACTGTGGTGGCTCCGA 61.311 66.667 0.53 0.00 39.52 4.55
31 32 2.262915 GACTGTGGTGGCTCCGAG 59.737 66.667 0.53 2.29 39.52 4.63
32 33 3.302347 GACTGTGGTGGCTCCGAGG 62.302 68.421 0.53 0.00 39.52 4.63
33 34 4.087892 CTGTGGTGGCTCCGAGGG 62.088 72.222 0.53 0.00 39.52 4.30
34 35 4.631740 TGTGGTGGCTCCGAGGGA 62.632 66.667 0.53 0.00 39.52 4.20
35 36 4.083862 GTGGTGGCTCCGAGGGAC 62.084 72.222 0.53 0.00 39.52 4.46
38 39 3.083997 GTGGCTCCGAGGGACCAT 61.084 66.667 7.19 0.00 36.12 3.55
39 40 3.083349 TGGCTCCGAGGGACCATG 61.083 66.667 0.00 0.00 31.47 3.66
40 41 4.554036 GGCTCCGAGGGACCATGC 62.554 72.222 0.00 0.00 0.00 4.06
41 42 3.785859 GCTCCGAGGGACCATGCA 61.786 66.667 0.00 0.00 0.00 3.96
42 43 3.112205 GCTCCGAGGGACCATGCAT 62.112 63.158 0.00 0.00 0.00 3.96
43 44 1.227764 CTCCGAGGGACCATGCATG 60.228 63.158 20.19 20.19 0.00 4.06
44 45 1.688884 TCCGAGGGACCATGCATGA 60.689 57.895 28.31 1.16 0.00 3.07
45 46 1.227764 CCGAGGGACCATGCATGAG 60.228 63.158 28.31 19.16 0.00 2.90
46 47 1.890979 CGAGGGACCATGCATGAGC 60.891 63.158 28.31 17.77 42.57 4.26
57 58 3.847621 GCATGAGCATGAGCATGAC 57.152 52.632 24.01 14.93 45.49 3.06
58 59 1.021968 GCATGAGCATGAGCATGACA 58.978 50.000 24.01 12.39 45.49 3.58
59 60 1.268589 GCATGAGCATGAGCATGACAC 60.269 52.381 24.01 9.28 45.49 3.67
60 61 1.003866 CATGAGCATGAGCATGACACG 60.004 52.381 18.17 2.91 45.49 4.49
61 62 0.247185 TGAGCATGAGCATGACACGA 59.753 50.000 14.27 0.00 45.49 4.35
62 63 1.338011 TGAGCATGAGCATGACACGAA 60.338 47.619 14.27 0.00 45.49 3.85
63 64 1.061711 GAGCATGAGCATGACACGAAC 59.938 52.381 14.27 0.00 45.49 3.95
64 65 0.247419 GCATGAGCATGACACGAACG 60.247 55.000 14.27 0.00 41.20 3.95
65 66 0.247419 CATGAGCATGACACGAACGC 60.247 55.000 4.47 0.00 41.20 4.84
66 67 0.670239 ATGAGCATGACACGAACGCA 60.670 50.000 0.00 0.00 0.00 5.24
67 68 0.670239 TGAGCATGACACGAACGCAT 60.670 50.000 0.00 0.00 0.00 4.73
68 69 0.025513 GAGCATGACACGAACGCATC 59.974 55.000 0.00 0.00 0.00 3.91
69 70 0.670239 AGCATGACACGAACGCATCA 60.670 50.000 0.00 4.09 0.00 3.07
70 71 0.247419 GCATGACACGAACGCATCAG 60.247 55.000 0.00 2.41 0.00 2.90
71 72 1.070821 CATGACACGAACGCATCAGT 58.929 50.000 0.00 0.00 0.00 3.41
72 73 1.070821 ATGACACGAACGCATCAGTG 58.929 50.000 0.00 10.13 38.04 3.66
98 99 3.879912 CGGTGGTTACGCTATAGGG 57.120 57.895 14.84 14.84 0.00 3.53
99 100 0.316204 CGGTGGTTACGCTATAGGGG 59.684 60.000 19.83 3.68 0.00 4.79
100 101 1.708341 GGTGGTTACGCTATAGGGGA 58.292 55.000 19.83 9.75 0.00 4.81
101 102 1.617357 GGTGGTTACGCTATAGGGGAG 59.383 57.143 19.83 0.00 0.00 4.30
102 103 1.617357 GTGGTTACGCTATAGGGGAGG 59.383 57.143 19.83 0.00 0.00 4.30
103 104 1.264295 GGTTACGCTATAGGGGAGGG 58.736 60.000 19.83 0.00 0.00 4.30
104 105 1.203100 GGTTACGCTATAGGGGAGGGA 60.203 57.143 19.83 0.00 0.00 4.20
105 106 2.169330 GTTACGCTATAGGGGAGGGAG 58.831 57.143 19.83 0.00 0.00 4.30
106 107 0.702902 TACGCTATAGGGGAGGGAGG 59.297 60.000 19.83 0.00 0.00 4.30
107 108 1.305381 CGCTATAGGGGAGGGAGGG 60.305 68.421 8.91 0.00 0.00 4.30
108 109 1.869553 GCTATAGGGGAGGGAGGGT 59.130 63.158 1.04 0.00 0.00 4.34
109 110 0.193827 GCTATAGGGGAGGGAGGGTT 59.806 60.000 1.04 0.00 0.00 4.11
110 111 2.031495 CTATAGGGGAGGGAGGGTTG 57.969 60.000 0.00 0.00 0.00 3.77
111 112 0.104620 TATAGGGGAGGGAGGGTTGC 60.105 60.000 0.00 0.00 0.00 4.17
112 113 1.914496 ATAGGGGAGGGAGGGTTGCT 61.914 60.000 0.00 0.00 0.00 3.91
113 114 2.132946 TAGGGGAGGGAGGGTTGCTT 62.133 60.000 0.00 0.00 0.00 3.91
114 115 1.618447 GGGGAGGGAGGGTTGCTTA 60.618 63.158 0.00 0.00 0.00 3.09
115 116 1.212250 GGGGAGGGAGGGTTGCTTAA 61.212 60.000 0.00 0.00 0.00 1.85
116 117 0.256177 GGGAGGGAGGGTTGCTTAAG 59.744 60.000 0.00 0.00 0.00 1.85
117 118 0.256177 GGAGGGAGGGTTGCTTAAGG 59.744 60.000 4.29 0.00 0.00 2.69
118 119 0.394488 GAGGGAGGGTTGCTTAAGGC 60.394 60.000 4.29 0.00 42.22 4.35
119 120 0.846870 AGGGAGGGTTGCTTAAGGCT 60.847 55.000 4.29 0.00 42.39 4.58
120 121 0.039764 GGGAGGGTTGCTTAAGGCTT 59.960 55.000 4.58 4.58 42.39 4.35
121 122 1.177401 GGAGGGTTGCTTAAGGCTTG 58.823 55.000 10.69 0.00 42.39 4.01
122 123 1.177401 GAGGGTTGCTTAAGGCTTGG 58.823 55.000 10.69 3.83 42.39 3.61
123 124 0.251787 AGGGTTGCTTAAGGCTTGGG 60.252 55.000 10.69 3.45 42.39 4.12
124 125 0.541998 GGGTTGCTTAAGGCTTGGGT 60.542 55.000 10.69 0.00 42.39 4.51
125 126 1.272258 GGGTTGCTTAAGGCTTGGGTA 60.272 52.381 10.69 0.00 42.39 3.69
126 127 2.092323 GGTTGCTTAAGGCTTGGGTAG 58.908 52.381 10.69 3.29 42.39 3.18
135 136 1.830836 GCTTGGGTAGCTAGGGACC 59.169 63.158 0.00 0.00 46.77 4.46
138 139 2.281429 GGGTAGCTAGGGACCCGT 59.719 66.667 6.67 0.00 45.86 5.28
139 140 1.831726 GGGTAGCTAGGGACCCGTC 60.832 68.421 6.67 0.00 45.86 4.79
149 150 3.006728 GACCCGTCCATCCACCCA 61.007 66.667 0.00 0.00 0.00 4.51
150 151 2.286121 ACCCGTCCATCCACCCAT 60.286 61.111 0.00 0.00 0.00 4.00
151 152 2.192979 CCCGTCCATCCACCCATG 59.807 66.667 0.00 0.00 0.00 3.66
166 167 5.266733 CACCCATGGATTTGGAGTTAATG 57.733 43.478 15.22 0.00 39.25 1.90
167 168 4.711355 CACCCATGGATTTGGAGTTAATGT 59.289 41.667 15.22 0.00 39.25 2.71
168 169 4.956075 ACCCATGGATTTGGAGTTAATGTC 59.044 41.667 15.22 0.00 39.25 3.06
169 170 4.955450 CCCATGGATTTGGAGTTAATGTCA 59.045 41.667 15.22 0.00 39.25 3.58
170 171 5.599656 CCCATGGATTTGGAGTTAATGTCAT 59.400 40.000 15.22 0.00 39.25 3.06
171 172 6.098695 CCCATGGATTTGGAGTTAATGTCATT 59.901 38.462 15.22 3.06 39.25 2.57
172 173 6.982141 CCATGGATTTGGAGTTAATGTCATTG 59.018 38.462 5.56 0.00 39.25 2.82
173 174 6.528537 TGGATTTGGAGTTAATGTCATTGG 57.471 37.500 8.39 0.00 0.00 3.16
174 175 5.105392 TGGATTTGGAGTTAATGTCATTGGC 60.105 40.000 8.39 1.24 0.00 4.52
175 176 5.105392 GGATTTGGAGTTAATGTCATTGGCA 60.105 40.000 8.39 0.00 0.00 4.92
176 177 5.389859 TTTGGAGTTAATGTCATTGGCAG 57.610 39.130 8.39 0.00 0.00 4.85
177 178 2.754552 TGGAGTTAATGTCATTGGCAGC 59.245 45.455 8.39 0.00 0.00 5.25
178 179 3.019564 GGAGTTAATGTCATTGGCAGCT 58.980 45.455 8.39 0.00 0.00 4.24
179 180 4.199310 GGAGTTAATGTCATTGGCAGCTA 58.801 43.478 8.39 0.00 0.00 3.32
180 181 4.640201 GGAGTTAATGTCATTGGCAGCTAA 59.360 41.667 8.39 0.00 0.00 3.09
181 182 5.449177 GGAGTTAATGTCATTGGCAGCTAAC 60.449 44.000 8.39 13.98 0.00 2.34
182 183 5.256474 AGTTAATGTCATTGGCAGCTAACT 58.744 37.500 16.84 16.84 0.00 2.24
183 184 6.414732 AGTTAATGTCATTGGCAGCTAACTA 58.585 36.000 19.35 0.00 31.95 2.24
184 185 7.056635 AGTTAATGTCATTGGCAGCTAACTAT 58.943 34.615 19.35 5.11 31.95 2.12
185 186 8.210946 AGTTAATGTCATTGGCAGCTAACTATA 58.789 33.333 19.35 0.00 31.95 1.31
186 187 8.499162 GTTAATGTCATTGGCAGCTAACTATAG 58.501 37.037 8.39 0.00 0.00 1.31
187 188 5.614324 TGTCATTGGCAGCTAACTATAGT 57.386 39.130 0.00 0.00 0.00 2.12
188 189 6.724893 TGTCATTGGCAGCTAACTATAGTA 57.275 37.500 5.65 0.00 0.00 1.82
189 190 7.303182 TGTCATTGGCAGCTAACTATAGTAT 57.697 36.000 5.65 0.00 0.00 2.12
190 191 7.154656 TGTCATTGGCAGCTAACTATAGTATG 58.845 38.462 5.65 3.20 0.00 2.39
191 192 7.155328 GTCATTGGCAGCTAACTATAGTATGT 58.845 38.462 5.65 0.00 0.00 2.29
192 193 7.657761 GTCATTGGCAGCTAACTATAGTATGTT 59.342 37.037 5.65 0.00 0.00 2.71
193 194 7.657354 TCATTGGCAGCTAACTATAGTATGTTG 59.343 37.037 5.65 10.87 0.00 3.33
194 195 5.297547 TGGCAGCTAACTATAGTATGTTGC 58.702 41.667 24.86 24.86 37.11 4.17
195 196 5.070446 TGGCAGCTAACTATAGTATGTTGCT 59.930 40.000 28.18 19.20 37.56 3.91
196 197 6.266786 TGGCAGCTAACTATAGTATGTTGCTA 59.733 38.462 28.18 24.25 37.56 3.49
197 198 6.809196 GGCAGCTAACTATAGTATGTTGCTAG 59.191 42.308 28.18 17.56 37.56 3.42
198 199 7.371936 GCAGCTAACTATAGTATGTTGCTAGT 58.628 38.462 25.24 5.88 36.00 2.57
199 200 7.327275 GCAGCTAACTATAGTATGTTGCTAGTG 59.673 40.741 25.24 15.01 36.00 2.74
200 201 7.327275 CAGCTAACTATAGTATGTTGCTAGTGC 59.673 40.741 5.65 0.00 40.20 4.40
201 202 7.231722 AGCTAACTATAGTATGTTGCTAGTGCT 59.768 37.037 5.65 0.00 40.48 4.40
202 203 8.512956 GCTAACTATAGTATGTTGCTAGTGCTA 58.487 37.037 5.65 0.00 40.48 3.49
212 213 3.359194 CTAGTGCTAGCTGTGCCTG 57.641 57.895 17.23 0.00 0.00 4.85
213 214 0.820226 CTAGTGCTAGCTGTGCCTGA 59.180 55.000 17.23 0.00 0.00 3.86
214 215 1.411977 CTAGTGCTAGCTGTGCCTGAT 59.588 52.381 17.23 0.00 0.00 2.90
215 216 0.617413 AGTGCTAGCTGTGCCTGATT 59.383 50.000 17.23 0.00 0.00 2.57
216 217 1.833630 AGTGCTAGCTGTGCCTGATTA 59.166 47.619 17.23 0.00 0.00 1.75
217 218 2.158986 AGTGCTAGCTGTGCCTGATTAG 60.159 50.000 17.23 0.00 0.00 1.73
218 219 1.224965 GCTAGCTGTGCCTGATTAGC 58.775 55.000 7.70 0.00 36.45 3.09
219 220 1.473965 GCTAGCTGTGCCTGATTAGCA 60.474 52.381 7.70 0.00 38.59 3.49
220 221 2.481854 CTAGCTGTGCCTGATTAGCAG 58.518 52.381 0.00 0.00 41.87 4.24
221 222 1.726265 GCTGTGCCTGATTAGCAGC 59.274 57.895 0.00 0.00 43.50 5.25
222 223 3.164026 CTGTGCCTGATTAGCAGCA 57.836 52.632 0.00 0.00 43.50 4.41
223 224 1.015109 CTGTGCCTGATTAGCAGCAG 58.985 55.000 0.00 0.00 43.50 4.24
224 225 0.614812 TGTGCCTGATTAGCAGCAGA 59.385 50.000 0.00 0.00 43.50 4.26
225 226 1.297664 GTGCCTGATTAGCAGCAGAG 58.702 55.000 0.00 0.00 43.50 3.35
226 227 0.463295 TGCCTGATTAGCAGCAGAGC 60.463 55.000 0.00 0.00 43.50 4.09
227 228 0.463295 GCCTGATTAGCAGCAGAGCA 60.463 55.000 0.00 0.00 43.50 4.26
228 229 1.297664 CCTGATTAGCAGCAGAGCAC 58.702 55.000 0.00 0.00 43.50 4.40
229 230 0.928922 CTGATTAGCAGCAGAGCACG 59.071 55.000 0.00 0.00 37.90 5.34
230 231 0.460811 TGATTAGCAGCAGAGCACGG 60.461 55.000 0.00 0.00 36.85 4.94
231 232 1.770085 GATTAGCAGCAGAGCACGGC 61.770 60.000 0.00 0.00 36.85 5.68
232 233 4.801624 TAGCAGCAGAGCACGGCG 62.802 66.667 4.80 4.80 41.73 6.46
265 266 3.795041 CCAGAGGCCCCAGCTCAG 61.795 72.222 0.00 0.00 39.73 3.35
266 267 4.486503 CAGAGGCCCCAGCTCAGC 62.487 72.222 0.00 0.00 39.73 4.26
272 273 4.767255 CCCCAGCTCAGCCGTGTC 62.767 72.222 0.00 0.00 0.00 3.67
274 275 4.363990 CCAGCTCAGCCGTGTCGT 62.364 66.667 0.00 0.00 0.00 4.34
275 276 3.108289 CAGCTCAGCCGTGTCGTG 61.108 66.667 0.00 0.00 0.00 4.35
294 295 3.086600 CCTGGGGGAGAGGAGCAC 61.087 72.222 0.00 0.00 31.48 4.40
295 296 2.040278 CTGGGGGAGAGGAGCACT 59.960 66.667 0.00 0.00 0.00 4.40
296 297 2.284921 TGGGGGAGAGGAGCACTG 60.285 66.667 0.00 0.00 0.00 3.66
297 298 3.791586 GGGGGAGAGGAGCACTGC 61.792 72.222 0.00 0.00 0.00 4.40
298 299 3.005539 GGGGAGAGGAGCACTGCA 61.006 66.667 3.30 0.00 0.00 4.41
299 300 2.583520 GGGAGAGGAGCACTGCAG 59.416 66.667 13.48 13.48 0.00 4.41
300 301 1.986757 GGGAGAGGAGCACTGCAGA 60.987 63.158 23.35 0.00 0.00 4.26
301 302 1.516892 GGAGAGGAGCACTGCAGAG 59.483 63.158 23.35 14.77 0.00 3.35
302 303 1.153588 GAGAGGAGCACTGCAGAGC 60.154 63.158 26.32 26.32 0.00 4.09
303 304 1.886253 GAGAGGAGCACTGCAGAGCA 61.886 60.000 32.94 0.00 36.92 4.26
304 305 1.741032 GAGGAGCACTGCAGAGCAC 60.741 63.158 32.94 27.35 33.79 4.40
305 306 2.745492 GGAGCACTGCAGAGCACC 60.745 66.667 32.94 31.36 35.67 5.01
306 307 2.745492 GAGCACTGCAGAGCACCC 60.745 66.667 32.94 19.57 33.79 4.61
307 308 4.694233 AGCACTGCAGAGCACCCG 62.694 66.667 32.94 8.88 33.79 5.28
308 309 4.687215 GCACTGCAGAGCACCCGA 62.687 66.667 28.20 0.00 33.79 5.14
309 310 2.267006 CACTGCAGAGCACCCGAT 59.733 61.111 23.35 0.00 33.79 4.18
310 311 2.104859 CACTGCAGAGCACCCGATG 61.105 63.158 23.35 0.00 33.79 3.84
311 312 2.285773 ACTGCAGAGCACCCGATGA 61.286 57.895 23.35 0.00 33.79 2.92
312 313 1.145598 CTGCAGAGCACCCGATGAT 59.854 57.895 8.42 0.00 33.79 2.45
313 314 0.463295 CTGCAGAGCACCCGATGATT 60.463 55.000 8.42 0.00 33.79 2.57
314 315 0.035152 TGCAGAGCACCCGATGATTT 60.035 50.000 0.00 0.00 31.71 2.17
315 316 0.379669 GCAGAGCACCCGATGATTTG 59.620 55.000 0.00 0.00 32.10 2.32
316 317 2.013563 GCAGAGCACCCGATGATTTGA 61.014 52.381 0.63 0.00 30.48 2.69
317 318 1.667724 CAGAGCACCCGATGATTTGAC 59.332 52.381 0.00 0.00 30.48 3.18
318 319 1.017387 GAGCACCCGATGATTTGACC 58.983 55.000 0.00 0.00 0.00 4.02
319 320 0.394352 AGCACCCGATGATTTGACCC 60.394 55.000 0.00 0.00 0.00 4.46
320 321 1.714899 GCACCCGATGATTTGACCCG 61.715 60.000 0.00 0.00 0.00 5.28
321 322 1.095228 CACCCGATGATTTGACCCGG 61.095 60.000 0.00 0.00 39.85 5.73
322 323 4.141144 CCGATGATTTGACCCGGG 57.859 61.111 22.25 22.25 36.81 5.73
323 324 1.525995 CCGATGATTTGACCCGGGG 60.526 63.158 27.92 12.73 36.81 5.73
324 325 1.525995 CGATGATTTGACCCGGGGG 60.526 63.158 27.92 5.70 42.03 5.40
325 326 1.828224 GATGATTTGACCCGGGGGC 60.828 63.158 27.92 16.71 39.32 5.80
326 327 3.373932 ATGATTTGACCCGGGGGCC 62.374 63.158 27.92 14.23 39.32 5.80
355 356 4.306967 GCCCCGCCTAGCTAGCTG 62.307 72.222 27.68 16.13 0.00 4.24
356 357 4.306967 CCCCGCCTAGCTAGCTGC 62.307 72.222 27.68 20.94 43.29 5.25
365 366 4.477413 GCTAGCTGCTGCATCCAT 57.523 55.556 18.42 0.00 42.74 3.41
366 367 1.950007 GCTAGCTGCTGCATCCATG 59.050 57.895 18.42 0.00 42.74 3.66
406 407 4.559386 GCTGCATGCGTCGCGTAC 62.559 66.667 12.39 7.22 0.00 3.67
418 419 2.202570 GCGTACGTGCGTCCATCT 60.203 61.111 26.31 0.00 0.00 2.90
419 420 2.222217 GCGTACGTGCGTCCATCTC 61.222 63.158 26.31 4.90 0.00 2.75
420 421 1.135939 CGTACGTGCGTCCATCTCA 59.864 57.895 18.32 0.00 0.00 3.27
421 422 0.248498 CGTACGTGCGTCCATCTCAT 60.248 55.000 18.32 0.00 0.00 2.90
422 423 1.478137 GTACGTGCGTCCATCTCATC 58.522 55.000 0.00 0.00 0.00 2.92
423 424 0.028902 TACGTGCGTCCATCTCATCG 59.971 55.000 0.00 0.00 0.00 3.84
426 427 3.929389 GCGTCCATCTCATCGCTC 58.071 61.111 0.00 0.00 44.28 5.03
427 428 2.013483 GCGTCCATCTCATCGCTCG 61.013 63.158 0.00 0.00 44.28 5.03
428 429 1.649267 CGTCCATCTCATCGCTCGA 59.351 57.895 0.00 0.00 0.00 4.04
429 430 0.239613 CGTCCATCTCATCGCTCGAT 59.760 55.000 0.00 0.00 34.81 3.59
430 431 1.727535 CGTCCATCTCATCGCTCGATC 60.728 57.143 1.30 0.00 31.62 3.69
431 432 0.884514 TCCATCTCATCGCTCGATCC 59.115 55.000 1.30 0.00 31.62 3.36
432 433 0.600057 CCATCTCATCGCTCGATCCA 59.400 55.000 1.30 0.00 31.62 3.41
433 434 1.668337 CCATCTCATCGCTCGATCCAC 60.668 57.143 1.30 0.00 31.62 4.02
434 435 0.600557 ATCTCATCGCTCGATCCACC 59.399 55.000 1.30 0.00 31.62 4.61
435 436 1.371022 CTCATCGCTCGATCCACCG 60.371 63.158 1.30 0.00 31.62 4.94
436 437 3.032609 CATCGCTCGATCCACCGC 61.033 66.667 1.30 0.00 31.62 5.68
437 438 4.630785 ATCGCTCGATCCACCGCG 62.631 66.667 8.04 8.04 46.28 6.46
440 441 4.492160 GCTCGATCCACCGCGTGA 62.492 66.667 4.92 0.00 35.23 4.35
441 442 2.579787 CTCGATCCACCGCGTGAC 60.580 66.667 4.92 0.00 35.23 3.67
442 443 4.124351 TCGATCCACCGCGTGACC 62.124 66.667 4.92 0.00 35.23 4.02
443 444 4.429212 CGATCCACCGCGTGACCA 62.429 66.667 4.92 0.00 35.23 4.02
444 445 2.509336 GATCCACCGCGTGACCAG 60.509 66.667 4.92 0.00 35.23 4.00
445 446 4.760047 ATCCACCGCGTGACCAGC 62.760 66.667 4.92 0.00 35.23 4.85
468 469 3.842923 CTGGCGCACCTCGATCCT 61.843 66.667 10.83 0.00 41.67 3.24
469 470 4.147449 TGGCGCACCTCGATCCTG 62.147 66.667 10.83 0.00 41.67 3.86
471 472 4.521062 GCGCACCTCGATCCTGCT 62.521 66.667 0.30 0.00 41.67 4.24
472 473 2.279120 CGCACCTCGATCCTGCTC 60.279 66.667 7.32 0.00 41.67 4.26
473 474 2.780094 CGCACCTCGATCCTGCTCT 61.780 63.158 7.32 0.00 41.67 4.09
474 475 1.227205 GCACCTCGATCCTGCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
475 476 1.954362 GCACCTCGATCCTGCTCTGT 61.954 60.000 0.00 0.00 0.00 3.41
476 477 0.102120 CACCTCGATCCTGCTCTGTC 59.898 60.000 0.00 0.00 0.00 3.51
477 478 1.040339 ACCTCGATCCTGCTCTGTCC 61.040 60.000 0.00 0.00 0.00 4.02
478 479 1.739049 CTCGATCCTGCTCTGTCCC 59.261 63.158 0.00 0.00 0.00 4.46
479 480 1.000359 TCGATCCTGCTCTGTCCCA 60.000 57.895 0.00 0.00 0.00 4.37
480 481 1.142748 CGATCCTGCTCTGTCCCAC 59.857 63.158 0.00 0.00 0.00 4.61
481 482 1.142748 GATCCTGCTCTGTCCCACG 59.857 63.158 0.00 0.00 0.00 4.94
482 483 2.303549 GATCCTGCTCTGTCCCACGG 62.304 65.000 0.00 0.00 0.00 4.94
483 484 3.314331 CCTGCTCTGTCCCACGGT 61.314 66.667 0.00 0.00 0.00 4.83
484 485 2.262915 CTGCTCTGTCCCACGGTC 59.737 66.667 0.00 0.00 0.00 4.79
485 486 2.203640 TGCTCTGTCCCACGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
486 487 2.262915 GCTCTGTCCCACGGTCTG 59.737 66.667 0.00 0.00 0.00 3.51
487 488 2.574955 GCTCTGTCCCACGGTCTGT 61.575 63.158 0.00 0.00 0.00 3.41
488 489 1.248785 GCTCTGTCCCACGGTCTGTA 61.249 60.000 0.00 0.00 0.00 2.74
489 490 0.811915 CTCTGTCCCACGGTCTGTAG 59.188 60.000 0.00 0.00 0.00 2.74
490 491 1.215647 CTGTCCCACGGTCTGTAGC 59.784 63.158 0.00 0.00 0.00 3.58
491 492 2.227089 CTGTCCCACGGTCTGTAGCC 62.227 65.000 0.00 0.00 0.00 3.93
492 493 2.118732 TCCCACGGTCTGTAGCCA 59.881 61.111 0.00 0.00 0.00 4.75
493 494 1.305802 TCCCACGGTCTGTAGCCAT 60.306 57.895 0.00 0.00 0.00 4.40
494 495 1.144057 CCCACGGTCTGTAGCCATC 59.856 63.158 0.00 0.00 0.00 3.51
495 496 1.330655 CCCACGGTCTGTAGCCATCT 61.331 60.000 0.00 0.00 0.00 2.90
496 497 1.399714 CCACGGTCTGTAGCCATCTA 58.600 55.000 0.00 0.00 0.00 1.98
497 498 1.338337 CCACGGTCTGTAGCCATCTAG 59.662 57.143 0.00 0.00 0.00 2.43
498 499 2.025155 CACGGTCTGTAGCCATCTAGT 58.975 52.381 0.00 0.00 0.00 2.57
499 500 2.033550 CACGGTCTGTAGCCATCTAGTC 59.966 54.545 0.00 0.00 0.00 2.59
500 501 2.092321 ACGGTCTGTAGCCATCTAGTCT 60.092 50.000 0.00 0.00 0.00 3.24
501 502 3.136077 ACGGTCTGTAGCCATCTAGTCTA 59.864 47.826 0.00 0.00 0.00 2.59
502 503 3.749088 CGGTCTGTAGCCATCTAGTCTAG 59.251 52.174 0.00 0.00 0.00 2.43
503 504 4.503469 CGGTCTGTAGCCATCTAGTCTAGA 60.503 50.000 12.02 12.02 39.50 2.43
504 505 5.566469 GGTCTGTAGCCATCTAGTCTAGAT 58.434 45.833 15.50 15.50 46.06 1.98
505 506 6.007703 GGTCTGTAGCCATCTAGTCTAGATT 58.992 44.000 18.16 8.37 42.70 2.40
506 507 7.169591 GGTCTGTAGCCATCTAGTCTAGATTA 58.830 42.308 18.16 7.48 42.70 1.75
507 508 7.832187 GGTCTGTAGCCATCTAGTCTAGATTAT 59.168 40.741 18.16 10.42 42.70 1.28
508 509 9.238368 GTCTGTAGCCATCTAGTCTAGATTATT 57.762 37.037 18.16 9.82 42.70 1.40
513 514 8.817092 AGCCATCTAGTCTAGATTATTACTCC 57.183 38.462 18.16 3.31 42.70 3.85
514 515 8.620177 AGCCATCTAGTCTAGATTATTACTCCT 58.380 37.037 18.16 5.12 42.70 3.69
515 516 8.899771 GCCATCTAGTCTAGATTATTACTCCTC 58.100 40.741 18.16 0.00 42.70 3.71
516 517 9.403583 CCATCTAGTCTAGATTATTACTCCTCC 57.596 40.741 18.16 0.00 42.70 4.30
519 520 8.828751 TCTAGTCTAGATTATTACTCCTCCTCC 58.171 40.741 5.41 0.00 0.00 4.30
520 521 7.657352 AGTCTAGATTATTACTCCTCCTCCT 57.343 40.000 0.00 0.00 0.00 3.69
521 522 7.696017 AGTCTAGATTATTACTCCTCCTCCTC 58.304 42.308 0.00 0.00 0.00 3.71
522 523 6.888088 GTCTAGATTATTACTCCTCCTCCTCC 59.112 46.154 0.00 0.00 0.00 4.30
523 524 5.959547 AGATTATTACTCCTCCTCCTCCT 57.040 43.478 0.00 0.00 0.00 3.69
524 525 7.968324 TCTAGATTATTACTCCTCCTCCTCCTA 59.032 40.741 0.00 0.00 0.00 2.94
525 526 7.612953 AGATTATTACTCCTCCTCCTCCTAT 57.387 40.000 0.00 0.00 0.00 2.57
526 527 8.718217 AGATTATTACTCCTCCTCCTCCTATA 57.282 38.462 0.00 0.00 0.00 1.31
527 528 9.316453 AGATTATTACTCCTCCTCCTCCTATAT 57.684 37.037 0.00 0.00 0.00 0.86
530 531 9.591220 TTATTACTCCTCCTCCTCCTATATACT 57.409 37.037 0.00 0.00 0.00 2.12
531 532 5.789574 ACTCCTCCTCCTCCTATATACTG 57.210 47.826 0.00 0.00 0.00 2.74
532 533 5.174775 ACTCCTCCTCCTCCTATATACTGT 58.825 45.833 0.00 0.00 0.00 3.55
533 534 5.617851 ACTCCTCCTCCTCCTATATACTGTT 59.382 44.000 0.00 0.00 0.00 3.16
534 535 6.142259 TCCTCCTCCTCCTATATACTGTTC 57.858 45.833 0.00 0.00 0.00 3.18
535 536 5.015391 TCCTCCTCCTCCTATATACTGTTCC 59.985 48.000 0.00 0.00 0.00 3.62
536 537 5.265989 CTCCTCCTCCTATATACTGTTCCC 58.734 50.000 0.00 0.00 0.00 3.97
537 538 4.926987 TCCTCCTCCTATATACTGTTCCCT 59.073 45.833 0.00 0.00 0.00 4.20
538 539 5.020132 CCTCCTCCTATATACTGTTCCCTG 58.980 50.000 0.00 0.00 0.00 4.45
539 540 5.011982 TCCTCCTATATACTGTTCCCTGG 57.988 47.826 0.00 0.00 0.00 4.45
540 541 4.097418 CCTCCTATATACTGTTCCCTGGG 58.903 52.174 6.33 6.33 0.00 4.45
541 542 3.515901 CTCCTATATACTGTTCCCTGGGC 59.484 52.174 8.22 0.00 0.00 5.36
542 543 3.116512 TCCTATATACTGTTCCCTGGGCA 60.117 47.826 8.22 0.00 0.00 5.36
543 544 3.846588 CCTATATACTGTTCCCTGGGCAT 59.153 47.826 8.22 0.00 0.00 4.40
544 545 4.080863 CCTATATACTGTTCCCTGGGCATC 60.081 50.000 8.22 1.20 0.00 3.91
545 546 0.846693 ATACTGTTCCCTGGGCATCC 59.153 55.000 8.22 0.00 0.00 3.51
546 547 1.622607 TACTGTTCCCTGGGCATCCG 61.623 60.000 8.22 0.00 35.24 4.18
547 548 2.609299 TGTTCCCTGGGCATCCGA 60.609 61.111 8.22 0.00 35.24 4.55
548 549 2.124695 GTTCCCTGGGCATCCGAC 60.125 66.667 8.22 0.00 35.24 4.79
549 550 3.781307 TTCCCTGGGCATCCGACG 61.781 66.667 8.22 0.00 35.24 5.12
552 553 4.838152 CCTGGGCATCCGACGGTG 62.838 72.222 14.79 12.44 35.24 4.94
557 558 3.499737 GCATCCGACGGTGCCTTG 61.500 66.667 22.85 12.30 35.35 3.61
558 559 2.819595 CATCCGACGGTGCCTTGG 60.820 66.667 14.79 0.00 0.00 3.61
559 560 4.778143 ATCCGACGGTGCCTTGGC 62.778 66.667 14.79 4.43 0.00 4.52
562 563 4.379243 CGACGGTGCCTTGGCTCT 62.379 66.667 13.18 0.00 0.00 4.09
563 564 2.435059 GACGGTGCCTTGGCTCTC 60.435 66.667 13.18 0.77 0.00 3.20
564 565 2.925170 ACGGTGCCTTGGCTCTCT 60.925 61.111 13.18 0.00 0.00 3.10
565 566 2.125350 CGGTGCCTTGGCTCTCTC 60.125 66.667 13.18 0.00 0.00 3.20
566 567 2.947532 CGGTGCCTTGGCTCTCTCA 61.948 63.158 13.18 0.00 0.00 3.27
567 568 1.376466 GGTGCCTTGGCTCTCTCAA 59.624 57.895 13.18 0.00 0.00 3.02
568 569 0.957888 GGTGCCTTGGCTCTCTCAAC 60.958 60.000 13.18 0.63 0.00 3.18
569 570 0.250467 GTGCCTTGGCTCTCTCAACA 60.250 55.000 13.18 0.00 0.00 3.33
570 571 0.250467 TGCCTTGGCTCTCTCAACAC 60.250 55.000 13.18 0.00 0.00 3.32
571 572 0.036022 GCCTTGGCTCTCTCAACACT 59.964 55.000 4.11 0.00 0.00 3.55
572 573 1.805869 CCTTGGCTCTCTCAACACTG 58.194 55.000 0.00 0.00 0.00 3.66
573 574 1.071385 CCTTGGCTCTCTCAACACTGT 59.929 52.381 0.00 0.00 0.00 3.55
574 575 2.300152 CCTTGGCTCTCTCAACACTGTA 59.700 50.000 0.00 0.00 0.00 2.74
575 576 3.583806 CTTGGCTCTCTCAACACTGTAG 58.416 50.000 0.00 0.00 0.00 2.74
576 577 1.273606 TGGCTCTCTCAACACTGTAGC 59.726 52.381 0.00 0.00 0.00 3.58
577 578 1.623359 GCTCTCTCAACACTGTAGCG 58.377 55.000 0.00 0.00 0.00 4.26
578 579 1.068194 GCTCTCTCAACACTGTAGCGT 60.068 52.381 0.00 0.00 0.00 5.07
579 580 2.608261 GCTCTCTCAACACTGTAGCGTT 60.608 50.000 0.00 0.00 0.00 4.84
580 581 2.983136 CTCTCTCAACACTGTAGCGTTG 59.017 50.000 6.47 6.47 43.09 4.10
581 582 2.361119 TCTCTCAACACTGTAGCGTTGT 59.639 45.455 11.27 0.00 42.48 3.32
582 583 2.469826 TCTCAACACTGTAGCGTTGTG 58.530 47.619 11.27 9.56 42.48 3.33
583 584 0.934496 TCAACACTGTAGCGTTGTGC 59.066 50.000 11.27 0.00 42.48 4.57
597 598 2.483583 TTGTGCGCCAACTTTACTTG 57.516 45.000 4.18 0.00 0.00 3.16
598 599 0.030101 TGTGCGCCAACTTTACTTGC 59.970 50.000 4.18 0.00 0.00 4.01
599 600 0.663269 GTGCGCCAACTTTACTTGCC 60.663 55.000 4.18 0.00 0.00 4.52
600 601 1.080772 GCGCCAACTTTACTTGCCC 60.081 57.895 0.00 0.00 0.00 5.36
601 602 1.584495 CGCCAACTTTACTTGCCCC 59.416 57.895 0.00 0.00 0.00 5.80
602 603 0.893727 CGCCAACTTTACTTGCCCCT 60.894 55.000 0.00 0.00 0.00 4.79
603 604 1.338107 GCCAACTTTACTTGCCCCTT 58.662 50.000 0.00 0.00 0.00 3.95
604 605 1.000843 GCCAACTTTACTTGCCCCTTG 59.999 52.381 0.00 0.00 0.00 3.61
605 606 2.316108 CCAACTTTACTTGCCCCTTGT 58.684 47.619 0.00 0.00 0.00 3.16
606 607 3.492337 CCAACTTTACTTGCCCCTTGTA 58.508 45.455 0.00 0.00 0.00 2.41
607 608 3.506067 CCAACTTTACTTGCCCCTTGTAG 59.494 47.826 0.00 0.00 0.00 2.74
608 609 2.791655 ACTTTACTTGCCCCTTGTAGC 58.208 47.619 0.00 0.00 0.00 3.58
609 610 2.375509 ACTTTACTTGCCCCTTGTAGCT 59.624 45.455 0.00 0.00 0.00 3.32
610 611 2.781681 TTACTTGCCCCTTGTAGCTC 57.218 50.000 0.00 0.00 0.00 4.09
611 612 0.909623 TACTTGCCCCTTGTAGCTCC 59.090 55.000 0.00 0.00 0.00 4.70
612 613 0.842467 ACTTGCCCCTTGTAGCTCCT 60.842 55.000 0.00 0.00 0.00 3.69
613 614 0.107459 CTTGCCCCTTGTAGCTCCTC 60.107 60.000 0.00 0.00 0.00 3.71
614 615 0.840288 TTGCCCCTTGTAGCTCCTCA 60.840 55.000 0.00 0.00 0.00 3.86
615 616 0.621571 TGCCCCTTGTAGCTCCTCAT 60.622 55.000 0.00 0.00 0.00 2.90
616 617 1.343985 TGCCCCTTGTAGCTCCTCATA 60.344 52.381 0.00 0.00 0.00 2.15
617 618 1.768870 GCCCCTTGTAGCTCCTCATAA 59.231 52.381 0.00 0.00 0.00 1.90
618 619 2.224402 GCCCCTTGTAGCTCCTCATAAG 60.224 54.545 0.00 0.00 0.00 1.73
619 620 2.224402 CCCCTTGTAGCTCCTCATAAGC 60.224 54.545 0.00 0.00 40.14 3.09
626 627 1.521580 GCTCCTCATAAGCTGGATGC 58.478 55.000 4.33 1.26 43.29 3.91
627 628 1.881498 GCTCCTCATAAGCTGGATGCC 60.881 57.143 4.33 0.00 44.23 4.40
628 629 0.767375 TCCTCATAAGCTGGATGCCC 59.233 55.000 4.33 0.00 44.23 5.36
629 630 0.604780 CCTCATAAGCTGGATGCCCG 60.605 60.000 4.33 0.00 44.23 6.13
630 631 0.604780 CTCATAAGCTGGATGCCCGG 60.605 60.000 0.00 0.00 44.23 5.73
646 647 3.866582 GGCCTGGCCGCACTAGAT 61.867 66.667 24.16 0.00 39.62 1.98
647 648 2.190578 GCCTGGCCGCACTAGATT 59.809 61.111 7.66 0.00 0.00 2.40
648 649 1.445942 GCCTGGCCGCACTAGATTA 59.554 57.895 7.66 0.00 0.00 1.75
649 650 0.035458 GCCTGGCCGCACTAGATTAT 59.965 55.000 7.66 0.00 0.00 1.28
650 651 1.543429 GCCTGGCCGCACTAGATTATT 60.543 52.381 7.66 0.00 0.00 1.40
651 652 2.146342 CCTGGCCGCACTAGATTATTG 58.854 52.381 0.00 0.00 0.00 1.90
652 653 1.532868 CTGGCCGCACTAGATTATTGC 59.467 52.381 0.00 0.00 0.00 3.56
653 654 1.140852 TGGCCGCACTAGATTATTGCT 59.859 47.619 0.00 0.00 32.80 3.91
654 655 1.801178 GGCCGCACTAGATTATTGCTC 59.199 52.381 0.00 0.00 32.80 4.26
655 656 2.483876 GCCGCACTAGATTATTGCTCA 58.516 47.619 0.00 0.00 32.80 4.26
656 657 2.221981 GCCGCACTAGATTATTGCTCAC 59.778 50.000 0.00 0.00 32.80 3.51
657 658 3.722147 CCGCACTAGATTATTGCTCACT 58.278 45.455 0.00 0.00 32.80 3.41
658 659 3.738282 CCGCACTAGATTATTGCTCACTC 59.262 47.826 0.00 0.00 32.80 3.51
659 660 3.738282 CGCACTAGATTATTGCTCACTCC 59.262 47.826 0.00 0.00 32.80 3.85
660 661 4.061596 GCACTAGATTATTGCTCACTCCC 58.938 47.826 0.00 0.00 32.32 4.30
661 662 4.636249 CACTAGATTATTGCTCACTCCCC 58.364 47.826 0.00 0.00 0.00 4.81
662 663 4.346418 CACTAGATTATTGCTCACTCCCCT 59.654 45.833 0.00 0.00 0.00 4.79
663 664 4.591072 ACTAGATTATTGCTCACTCCCCTC 59.409 45.833 0.00 0.00 0.00 4.30
664 665 3.663198 AGATTATTGCTCACTCCCCTCT 58.337 45.455 0.00 0.00 0.00 3.69
665 666 3.645687 AGATTATTGCTCACTCCCCTCTC 59.354 47.826 0.00 0.00 0.00 3.20
666 667 2.856760 TATTGCTCACTCCCCTCTCT 57.143 50.000 0.00 0.00 0.00 3.10
667 668 1.494960 ATTGCTCACTCCCCTCTCTC 58.505 55.000 0.00 0.00 0.00 3.20
668 669 0.616111 TTGCTCACTCCCCTCTCTCC 60.616 60.000 0.00 0.00 0.00 3.71
669 670 1.000993 GCTCACTCCCCTCTCTCCA 59.999 63.158 0.00 0.00 0.00 3.86
670 671 0.616111 GCTCACTCCCCTCTCTCCAA 60.616 60.000 0.00 0.00 0.00 3.53
671 672 1.944177 CTCACTCCCCTCTCTCCAAA 58.056 55.000 0.00 0.00 0.00 3.28
672 673 2.260822 CTCACTCCCCTCTCTCCAAAA 58.739 52.381 0.00 0.00 0.00 2.44
673 674 1.978580 TCACTCCCCTCTCTCCAAAAC 59.021 52.381 0.00 0.00 0.00 2.43
674 675 1.699634 CACTCCCCTCTCTCCAAAACA 59.300 52.381 0.00 0.00 0.00 2.83
675 676 2.307098 CACTCCCCTCTCTCCAAAACAT 59.693 50.000 0.00 0.00 0.00 2.71
676 677 2.307098 ACTCCCCTCTCTCCAAAACATG 59.693 50.000 0.00 0.00 0.00 3.21
677 678 1.004745 TCCCCTCTCTCCAAAACATGC 59.995 52.381 0.00 0.00 0.00 4.06
678 679 1.005215 CCCCTCTCTCCAAAACATGCT 59.995 52.381 0.00 0.00 0.00 3.79
679 680 2.089980 CCCTCTCTCCAAAACATGCTG 58.910 52.381 0.00 0.00 0.00 4.41
680 681 1.471684 CCTCTCTCCAAAACATGCTGC 59.528 52.381 0.00 0.00 0.00 5.25
681 682 1.471684 CTCTCTCCAAAACATGCTGCC 59.528 52.381 0.00 0.00 0.00 4.85
682 683 0.529378 CTCTCCAAAACATGCTGCCC 59.471 55.000 0.00 0.00 0.00 5.36
683 684 1.213537 CTCCAAAACATGCTGCCCG 59.786 57.895 0.00 0.00 0.00 6.13
684 685 1.228398 TCCAAAACATGCTGCCCGA 60.228 52.632 0.00 0.00 0.00 5.14
685 686 1.213537 CCAAAACATGCTGCCCGAG 59.786 57.895 0.00 0.00 0.00 4.63
686 687 1.526575 CCAAAACATGCTGCCCGAGT 61.527 55.000 0.00 0.00 0.00 4.18
687 688 0.387622 CAAAACATGCTGCCCGAGTG 60.388 55.000 0.00 0.00 0.00 3.51
688 689 0.537143 AAAACATGCTGCCCGAGTGA 60.537 50.000 0.00 0.00 0.00 3.41
689 690 0.957395 AAACATGCTGCCCGAGTGAG 60.957 55.000 0.00 0.00 0.00 3.51
690 691 2.116983 AACATGCTGCCCGAGTGAGT 62.117 55.000 0.00 0.00 0.00 3.41
691 692 1.257750 ACATGCTGCCCGAGTGAGTA 61.258 55.000 0.00 0.00 0.00 2.59
692 693 0.105593 CATGCTGCCCGAGTGAGTAT 59.894 55.000 0.00 0.00 0.00 2.12
693 694 1.341209 CATGCTGCCCGAGTGAGTATA 59.659 52.381 0.00 0.00 0.00 1.47
694 695 1.704641 TGCTGCCCGAGTGAGTATAT 58.295 50.000 0.00 0.00 0.00 0.86
695 696 1.341209 TGCTGCCCGAGTGAGTATATG 59.659 52.381 0.00 0.00 0.00 1.78
696 697 1.937108 GCTGCCCGAGTGAGTATATGC 60.937 57.143 0.00 0.00 0.00 3.14
697 698 0.679505 TGCCCGAGTGAGTATATGCC 59.320 55.000 0.00 0.00 0.00 4.40
698 699 0.969894 GCCCGAGTGAGTATATGCCT 59.030 55.000 0.00 0.00 0.00 4.75
699 700 1.337260 GCCCGAGTGAGTATATGCCTG 60.337 57.143 0.00 0.00 0.00 4.85
700 701 1.337260 CCCGAGTGAGTATATGCCTGC 60.337 57.143 0.00 0.00 0.00 4.85
701 702 1.341209 CCGAGTGAGTATATGCCTGCA 59.659 52.381 0.00 0.00 0.00 4.41
702 703 2.608998 CCGAGTGAGTATATGCCTGCAG 60.609 54.545 6.78 6.78 0.00 4.41
703 704 2.608998 CGAGTGAGTATATGCCTGCAGG 60.609 54.545 29.34 29.34 38.53 4.85
1559 1586 4.225042 TGCTATTTCTGTCTGGTATGGTGT 59.775 41.667 0.00 0.00 0.00 4.16
1608 1636 3.258622 AGTTAGTAGTGAGTTGGAGGCAC 59.741 47.826 0.00 0.00 0.00 5.01
1839 1872 5.173774 TGTCAAAATGTTGAGAGTTCAGC 57.826 39.130 0.00 0.00 44.44 4.26
1840 1873 4.639755 TGTCAAAATGTTGAGAGTTCAGCA 59.360 37.500 0.00 0.00 46.49 4.41
1842 1875 6.035843 GTCAAAATGTTGAGAGTTCAGCAAA 58.964 36.000 0.00 0.00 45.74 3.68
1879 2061 4.559862 AACATGGTTTTTCACCCAACAA 57.440 36.364 0.00 0.00 46.68 2.83
1983 2165 1.205893 GTTCCTCTCCCTGTAGCACTG 59.794 57.143 0.00 0.00 0.00 3.66
2224 2406 2.550830 TTGAGGAGCTTGTGTCCTTC 57.449 50.000 0.00 0.00 45.00 3.46
2548 2730 1.895131 GCTCAATTTCTTGCCCTTGGA 59.105 47.619 0.00 0.00 32.11 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.215647 CAGTCCTGTCCGCTGGTAC 59.784 63.158 0.00 0.00 35.49 3.34
1 2 1.228769 ACAGTCCTGTCCGCTGGTA 60.229 57.895 0.00 0.00 40.24 3.25
2 3 2.524394 ACAGTCCTGTCCGCTGGT 60.524 61.111 0.00 0.00 40.24 4.00
3 4 2.047844 CACAGTCCTGTCCGCTGG 60.048 66.667 0.00 0.00 42.83 4.85
4 5 2.047844 CCACAGTCCTGTCCGCTG 60.048 66.667 0.00 0.00 42.83 5.18
5 6 2.524394 ACCACAGTCCTGTCCGCT 60.524 61.111 0.00 0.00 42.83 5.52
6 7 2.357517 CACCACAGTCCTGTCCGC 60.358 66.667 0.00 0.00 42.83 5.54
7 8 2.343758 CCACCACAGTCCTGTCCG 59.656 66.667 0.00 0.00 42.83 4.79
8 9 2.032681 GCCACCACAGTCCTGTCC 59.967 66.667 0.00 0.00 42.83 4.02
9 10 1.004440 GAGCCACCACAGTCCTGTC 60.004 63.158 0.00 0.00 42.83 3.51
10 11 2.520536 GGAGCCACCACAGTCCTGT 61.521 63.158 0.00 0.00 46.17 4.00
11 12 2.348998 GGAGCCACCACAGTCCTG 59.651 66.667 0.00 0.00 38.79 3.86
12 13 3.314331 CGGAGCCACCACAGTCCT 61.314 66.667 0.00 0.00 38.90 3.85
13 14 3.302347 CTCGGAGCCACCACAGTCC 62.302 68.421 0.00 0.00 38.90 3.85
14 15 2.262915 CTCGGAGCCACCACAGTC 59.737 66.667 0.00 0.00 38.90 3.51
15 16 3.314331 CCTCGGAGCCACCACAGT 61.314 66.667 0.00 0.00 38.90 3.55
16 17 4.087892 CCCTCGGAGCCACCACAG 62.088 72.222 0.00 0.00 38.90 3.66
17 18 4.631740 TCCCTCGGAGCCACCACA 62.632 66.667 0.00 0.00 38.90 4.17
18 19 4.083862 GTCCCTCGGAGCCACCAC 62.084 72.222 0.00 0.00 38.90 4.16
25 26 1.227764 CATGCATGGTCCCTCGGAG 60.228 63.158 19.40 0.00 29.39 4.63
26 27 1.688884 TCATGCATGGTCCCTCGGA 60.689 57.895 25.97 0.55 0.00 4.55
27 28 1.227764 CTCATGCATGGTCCCTCGG 60.228 63.158 25.97 0.00 0.00 4.63
28 29 1.890979 GCTCATGCATGGTCCCTCG 60.891 63.158 25.97 7.63 39.41 4.63
29 30 1.225426 TGCTCATGCATGGTCCCTC 59.775 57.895 25.97 9.66 45.31 4.30
30 31 3.418687 TGCTCATGCATGGTCCCT 58.581 55.556 25.97 0.00 45.31 4.20
39 40 1.021968 TGTCATGCTCATGCTCATGC 58.978 50.000 17.06 13.71 39.76 4.06
40 41 1.003866 CGTGTCATGCTCATGCTCATG 60.004 52.381 16.21 16.21 40.92 3.07
41 42 1.134610 TCGTGTCATGCTCATGCTCAT 60.135 47.619 5.04 0.00 38.65 2.90
42 43 0.247185 TCGTGTCATGCTCATGCTCA 59.753 50.000 5.04 4.69 38.65 4.26
43 44 1.061711 GTTCGTGTCATGCTCATGCTC 59.938 52.381 5.04 2.43 38.65 4.26
44 45 1.081892 GTTCGTGTCATGCTCATGCT 58.918 50.000 5.04 0.00 38.65 3.79
45 46 0.247419 CGTTCGTGTCATGCTCATGC 60.247 55.000 5.04 2.05 38.65 4.06
46 47 0.247419 GCGTTCGTGTCATGCTCATG 60.247 55.000 3.55 3.55 40.09 3.07
47 48 0.670239 TGCGTTCGTGTCATGCTCAT 60.670 50.000 0.00 0.00 0.00 2.90
48 49 0.670239 ATGCGTTCGTGTCATGCTCA 60.670 50.000 0.00 0.00 0.00 4.26
49 50 0.025513 GATGCGTTCGTGTCATGCTC 59.974 55.000 0.00 0.00 0.00 4.26
50 51 0.670239 TGATGCGTTCGTGTCATGCT 60.670 50.000 0.00 0.00 0.00 3.79
51 52 0.247419 CTGATGCGTTCGTGTCATGC 60.247 55.000 0.00 0.00 0.00 4.06
52 53 1.070821 ACTGATGCGTTCGTGTCATG 58.929 50.000 0.00 0.00 0.00 3.07
53 54 1.070821 CACTGATGCGTTCGTGTCAT 58.929 50.000 1.58 0.00 0.00 3.06
54 55 1.556591 GCACTGATGCGTTCGTGTCA 61.557 55.000 9.40 0.00 43.33 3.58
55 56 1.130613 GCACTGATGCGTTCGTGTC 59.869 57.895 9.40 1.05 43.33 3.67
56 57 3.244105 GCACTGATGCGTTCGTGT 58.756 55.556 9.40 0.00 43.33 4.49
74 75 3.419759 GCGTAACCACCGCCAGTG 61.420 66.667 0.00 0.00 45.20 3.66
80 81 0.316204 CCCCTATAGCGTAACCACCG 59.684 60.000 0.00 0.00 0.00 4.94
81 82 1.617357 CTCCCCTATAGCGTAACCACC 59.383 57.143 0.00 0.00 0.00 4.61
82 83 1.617357 CCTCCCCTATAGCGTAACCAC 59.383 57.143 0.00 0.00 0.00 4.16
83 84 1.481802 CCCTCCCCTATAGCGTAACCA 60.482 57.143 0.00 0.00 0.00 3.67
84 85 1.203100 TCCCTCCCCTATAGCGTAACC 60.203 57.143 0.00 0.00 0.00 2.85
85 86 2.169330 CTCCCTCCCCTATAGCGTAAC 58.831 57.143 0.00 0.00 0.00 2.50
86 87 1.076677 CCTCCCTCCCCTATAGCGTAA 59.923 57.143 0.00 0.00 0.00 3.18
87 88 0.702902 CCTCCCTCCCCTATAGCGTA 59.297 60.000 0.00 0.00 0.00 4.42
88 89 1.465623 CCTCCCTCCCCTATAGCGT 59.534 63.158 0.00 0.00 0.00 5.07
89 90 1.305381 CCCTCCCTCCCCTATAGCG 60.305 68.421 0.00 0.00 0.00 4.26
90 91 0.193827 AACCCTCCCTCCCCTATAGC 59.806 60.000 0.00 0.00 0.00 2.97
91 92 2.031495 CAACCCTCCCTCCCCTATAG 57.969 60.000 0.00 0.00 0.00 1.31
92 93 0.104620 GCAACCCTCCCTCCCCTATA 60.105 60.000 0.00 0.00 0.00 1.31
93 94 1.386057 GCAACCCTCCCTCCCCTAT 60.386 63.158 0.00 0.00 0.00 2.57
94 95 2.042261 GCAACCCTCCCTCCCCTA 59.958 66.667 0.00 0.00 0.00 3.53
95 96 2.132946 TAAGCAACCCTCCCTCCCCT 62.133 60.000 0.00 0.00 0.00 4.79
96 97 1.212250 TTAAGCAACCCTCCCTCCCC 61.212 60.000 0.00 0.00 0.00 4.81
97 98 0.256177 CTTAAGCAACCCTCCCTCCC 59.744 60.000 0.00 0.00 0.00 4.30
98 99 0.256177 CCTTAAGCAACCCTCCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
99 100 0.394488 GCCTTAAGCAACCCTCCCTC 60.394 60.000 0.00 0.00 42.97 4.30
100 101 1.691823 GCCTTAAGCAACCCTCCCT 59.308 57.895 0.00 0.00 42.97 4.20
101 102 4.338815 GCCTTAAGCAACCCTCCC 57.661 61.111 0.00 0.00 42.97 4.30
106 107 3.779975 GCTACCCAAGCCTTAAGCAACC 61.780 54.545 0.00 0.00 46.25 3.77
107 108 1.472878 GCTACCCAAGCCTTAAGCAAC 59.527 52.381 0.00 0.00 46.25 4.17
108 109 1.834188 GCTACCCAAGCCTTAAGCAA 58.166 50.000 0.00 0.00 46.25 3.91
109 110 3.569873 GCTACCCAAGCCTTAAGCA 57.430 52.632 0.00 0.00 46.25 3.91
122 123 1.831726 GGACGGGTCCCTAGCTACC 60.832 68.421 6.29 3.66 43.94 3.18
123 124 3.853404 GGACGGGTCCCTAGCTAC 58.147 66.667 6.29 0.00 43.94 3.58
132 133 2.375345 ATGGGTGGATGGACGGGTC 61.375 63.158 0.00 0.00 0.00 4.46
133 134 2.286121 ATGGGTGGATGGACGGGT 60.286 61.111 0.00 0.00 0.00 5.28
134 135 2.192979 CATGGGTGGATGGACGGG 59.807 66.667 0.00 0.00 0.00 5.28
144 145 4.711355 ACATTAACTCCAAATCCATGGGTG 59.289 41.667 13.02 7.92 41.05 4.61
145 146 4.946646 ACATTAACTCCAAATCCATGGGT 58.053 39.130 13.02 0.00 41.05 4.51
146 147 4.955450 TGACATTAACTCCAAATCCATGGG 59.045 41.667 13.02 0.00 41.05 4.00
147 148 6.720112 ATGACATTAACTCCAAATCCATGG 57.280 37.500 4.97 4.97 42.12 3.66
148 149 6.982141 CCAATGACATTAACTCCAAATCCATG 59.018 38.462 0.00 0.00 0.00 3.66
149 150 6.407299 GCCAATGACATTAACTCCAAATCCAT 60.407 38.462 0.00 0.00 0.00 3.41
150 151 5.105392 GCCAATGACATTAACTCCAAATCCA 60.105 40.000 0.00 0.00 0.00 3.41
151 152 5.105392 TGCCAATGACATTAACTCCAAATCC 60.105 40.000 0.00 0.00 0.00 3.01
152 153 5.964758 TGCCAATGACATTAACTCCAAATC 58.035 37.500 0.00 0.00 0.00 2.17
153 154 5.625197 GCTGCCAATGACATTAACTCCAAAT 60.625 40.000 0.00 0.00 0.00 2.32
154 155 4.321899 GCTGCCAATGACATTAACTCCAAA 60.322 41.667 0.00 0.00 0.00 3.28
155 156 3.193267 GCTGCCAATGACATTAACTCCAA 59.807 43.478 0.00 0.00 0.00 3.53
156 157 2.754552 GCTGCCAATGACATTAACTCCA 59.245 45.455 0.00 0.00 0.00 3.86
157 158 3.019564 AGCTGCCAATGACATTAACTCC 58.980 45.455 0.00 0.00 0.00 3.85
158 159 5.355350 AGTTAGCTGCCAATGACATTAACTC 59.645 40.000 0.00 0.00 28.92 3.01
159 160 5.256474 AGTTAGCTGCCAATGACATTAACT 58.744 37.500 0.00 2.71 0.00 2.24
160 161 5.567138 AGTTAGCTGCCAATGACATTAAC 57.433 39.130 0.00 0.37 0.00 2.01
161 162 8.210946 ACTATAGTTAGCTGCCAATGACATTAA 58.789 33.333 0.00 0.00 0.00 1.40
162 163 7.735917 ACTATAGTTAGCTGCCAATGACATTA 58.264 34.615 0.00 0.00 0.00 1.90
163 164 6.595682 ACTATAGTTAGCTGCCAATGACATT 58.404 36.000 0.00 0.00 0.00 2.71
164 165 6.179906 ACTATAGTTAGCTGCCAATGACAT 57.820 37.500 0.00 0.00 0.00 3.06
165 166 5.614324 ACTATAGTTAGCTGCCAATGACA 57.386 39.130 0.00 0.00 0.00 3.58
166 167 7.155328 ACATACTATAGTTAGCTGCCAATGAC 58.845 38.462 11.40 0.00 0.00 3.06
167 168 7.303182 ACATACTATAGTTAGCTGCCAATGA 57.697 36.000 11.40 0.00 0.00 2.57
168 169 7.571983 GCAACATACTATAGTTAGCTGCCAATG 60.572 40.741 11.40 7.71 0.00 2.82
169 170 6.428159 GCAACATACTATAGTTAGCTGCCAAT 59.572 38.462 11.40 0.00 0.00 3.16
170 171 5.758296 GCAACATACTATAGTTAGCTGCCAA 59.242 40.000 11.40 0.00 0.00 4.52
171 172 5.070446 AGCAACATACTATAGTTAGCTGCCA 59.930 40.000 20.12 0.98 33.82 4.92
172 173 5.542779 AGCAACATACTATAGTTAGCTGCC 58.457 41.667 20.12 9.51 33.82 4.85
173 174 7.327275 CACTAGCAACATACTATAGTTAGCTGC 59.673 40.741 11.40 15.59 35.41 5.25
174 175 7.327275 GCACTAGCAACATACTATAGTTAGCTG 59.673 40.741 11.40 6.95 41.58 4.24
175 176 7.231722 AGCACTAGCAACATACTATAGTTAGCT 59.768 37.037 11.40 14.54 45.49 3.32
176 177 7.371936 AGCACTAGCAACATACTATAGTTAGC 58.628 38.462 11.40 8.38 45.49 3.09
194 195 0.820226 TCAGGCACAGCTAGCACTAG 59.180 55.000 18.83 6.22 36.29 2.57
195 196 1.489481 ATCAGGCACAGCTAGCACTA 58.511 50.000 18.83 0.00 0.00 2.74
196 197 0.617413 AATCAGGCACAGCTAGCACT 59.383 50.000 18.83 3.83 0.00 4.40
197 198 2.208431 CTAATCAGGCACAGCTAGCAC 58.792 52.381 18.83 2.90 0.00 4.40
198 199 1.473965 GCTAATCAGGCACAGCTAGCA 60.474 52.381 18.83 0.00 33.54 3.49
199 200 1.224965 GCTAATCAGGCACAGCTAGC 58.775 55.000 6.62 6.62 0.00 3.42
200 201 2.481854 CTGCTAATCAGGCACAGCTAG 58.518 52.381 0.00 0.00 39.15 3.42
201 202 2.609427 CTGCTAATCAGGCACAGCTA 57.391 50.000 0.00 0.00 39.15 3.32
202 203 3.473147 CTGCTAATCAGGCACAGCT 57.527 52.632 0.00 0.00 39.15 4.24
203 204 1.726265 GCTGCTAATCAGGCACAGC 59.274 57.895 0.00 0.00 45.95 4.40
204 205 1.015109 CTGCTGCTAATCAGGCACAG 58.985 55.000 0.00 0.00 43.06 3.66
205 206 0.614812 TCTGCTGCTAATCAGGCACA 59.385 50.000 0.00 0.00 43.06 4.57
206 207 1.297664 CTCTGCTGCTAATCAGGCAC 58.702 55.000 0.00 0.00 43.06 5.01
207 208 0.463295 GCTCTGCTGCTAATCAGGCA 60.463 55.000 0.00 0.00 43.06 4.75
208 209 0.463295 TGCTCTGCTGCTAATCAGGC 60.463 55.000 0.00 0.00 43.06 4.85
209 210 1.297664 GTGCTCTGCTGCTAATCAGG 58.702 55.000 0.00 0.00 43.06 3.86
210 211 0.928922 CGTGCTCTGCTGCTAATCAG 59.071 55.000 0.00 0.00 45.62 2.90
211 212 0.460811 CCGTGCTCTGCTGCTAATCA 60.461 55.000 0.00 0.00 0.00 2.57
212 213 1.770085 GCCGTGCTCTGCTGCTAATC 61.770 60.000 0.00 0.00 0.00 1.75
213 214 1.817099 GCCGTGCTCTGCTGCTAAT 60.817 57.895 0.00 0.00 0.00 1.73
214 215 2.434884 GCCGTGCTCTGCTGCTAA 60.435 61.111 0.00 0.00 0.00 3.09
215 216 4.801624 CGCCGTGCTCTGCTGCTA 62.802 66.667 0.00 0.00 0.00 3.49
229 230 4.424566 CATGCCAACAGTGCCGCC 62.425 66.667 0.00 0.00 0.00 6.13
230 231 4.424566 CCATGCCAACAGTGCCGC 62.425 66.667 0.00 0.00 0.00 6.53
231 232 4.424566 GCCATGCCAACAGTGCCG 62.425 66.667 0.00 0.00 0.00 5.69
248 249 3.795041 CTGAGCTGGGGCCTCTGG 61.795 72.222 12.02 1.45 39.73 3.86
249 250 4.486503 GCTGAGCTGGGGCCTCTG 62.487 72.222 3.07 4.05 39.73 3.35
255 256 4.767255 GACACGGCTGAGCTGGGG 62.767 72.222 21.11 12.76 43.60 4.96
257 258 4.363990 ACGACACGGCTGAGCTGG 62.364 66.667 18.73 9.08 39.57 4.85
258 259 3.108289 CACGACACGGCTGAGCTG 61.108 66.667 12.53 12.53 41.29 4.24
273 274 4.741239 TCCTCTCCCCCAGGGCAC 62.741 72.222 0.00 0.00 43.94 5.01
274 275 4.421554 CTCCTCTCCCCCAGGGCA 62.422 72.222 0.00 0.00 43.94 5.36
276 277 4.421554 TGCTCCTCTCCCCCAGGG 62.422 72.222 0.00 0.00 46.11 4.45
277 278 3.086600 GTGCTCCTCTCCCCCAGG 61.087 72.222 0.00 0.00 0.00 4.45
278 279 2.040278 AGTGCTCCTCTCCCCCAG 59.960 66.667 0.00 0.00 0.00 4.45
279 280 2.284921 CAGTGCTCCTCTCCCCCA 60.285 66.667 0.00 0.00 0.00 4.96
280 281 3.791586 GCAGTGCTCCTCTCCCCC 61.792 72.222 8.18 0.00 0.00 5.40
281 282 3.005539 TGCAGTGCTCCTCTCCCC 61.006 66.667 17.60 0.00 0.00 4.81
282 283 1.958902 CTCTGCAGTGCTCCTCTCCC 61.959 65.000 17.60 0.00 0.00 4.30
283 284 1.516892 CTCTGCAGTGCTCCTCTCC 59.483 63.158 17.60 0.00 0.00 3.71
284 285 1.153588 GCTCTGCAGTGCTCCTCTC 60.154 63.158 28.75 2.90 0.00 3.20
285 286 1.912264 TGCTCTGCAGTGCTCCTCT 60.912 57.895 33.41 0.00 35.73 3.69
286 287 1.741032 GTGCTCTGCAGTGCTCCTC 60.741 63.158 33.41 20.20 40.08 3.71
287 288 2.346739 GTGCTCTGCAGTGCTCCT 59.653 61.111 33.41 0.00 40.08 3.69
288 289 2.745492 GGTGCTCTGCAGTGCTCC 60.745 66.667 33.42 33.42 40.08 4.70
289 290 2.745492 GGGTGCTCTGCAGTGCTC 60.745 66.667 33.41 29.88 40.08 4.26
290 291 4.694233 CGGGTGCTCTGCAGTGCT 62.694 66.667 33.41 0.00 40.08 4.40
291 292 3.965539 ATCGGGTGCTCTGCAGTGC 62.966 63.158 29.18 29.18 40.08 4.40
292 293 2.104859 CATCGGGTGCTCTGCAGTG 61.105 63.158 14.67 12.95 40.08 3.66
293 294 1.620739 ATCATCGGGTGCTCTGCAGT 61.621 55.000 14.67 0.00 40.08 4.40
294 295 0.463295 AATCATCGGGTGCTCTGCAG 60.463 55.000 7.63 7.63 40.08 4.41
295 296 0.035152 AAATCATCGGGTGCTCTGCA 60.035 50.000 0.00 0.00 35.60 4.41
296 297 0.379669 CAAATCATCGGGTGCTCTGC 59.620 55.000 0.00 0.00 0.00 4.26
297 298 1.667724 GTCAAATCATCGGGTGCTCTG 59.332 52.381 0.00 0.00 0.00 3.35
298 299 1.407437 GGTCAAATCATCGGGTGCTCT 60.407 52.381 0.00 0.00 0.00 4.09
299 300 1.017387 GGTCAAATCATCGGGTGCTC 58.983 55.000 0.00 0.00 0.00 4.26
300 301 0.394352 GGGTCAAATCATCGGGTGCT 60.394 55.000 0.00 0.00 0.00 4.40
301 302 1.714899 CGGGTCAAATCATCGGGTGC 61.715 60.000 0.00 0.00 0.00 5.01
302 303 1.095228 CCGGGTCAAATCATCGGGTG 61.095 60.000 0.00 0.00 37.35 4.61
303 304 1.223487 CCGGGTCAAATCATCGGGT 59.777 57.895 0.00 0.00 37.35 5.28
304 305 4.141144 CCGGGTCAAATCATCGGG 57.859 61.111 0.00 0.00 37.35 5.14
305 306 1.525995 CCCCGGGTCAAATCATCGG 60.526 63.158 21.85 0.00 40.32 4.18
306 307 1.525995 CCCCCGGGTCAAATCATCG 60.526 63.158 21.85 0.00 0.00 3.84
307 308 1.828224 GCCCCCGGGTCAAATCATC 60.828 63.158 21.85 0.00 37.65 2.92
308 309 2.278738 GCCCCCGGGTCAAATCAT 59.721 61.111 21.85 0.00 37.65 2.45
309 310 4.055227 GGCCCCCGGGTCAAATCA 62.055 66.667 21.85 0.00 40.19 2.57
338 339 4.306967 CAGCTAGCTAGGCGGGGC 62.307 72.222 18.86 7.57 34.52 5.80
339 340 4.306967 GCAGCTAGCTAGGCGGGG 62.307 72.222 18.86 4.09 41.15 5.73
348 349 1.950007 CATGGATGCAGCAGCTAGC 59.050 57.895 11.16 6.62 46.19 3.42
389 390 4.559386 GTACGCGACGCATGCAGC 62.559 66.667 21.35 17.93 40.87 5.25
390 391 4.251909 CGTACGCGACGCATGCAG 62.252 66.667 21.35 12.98 46.27 4.41
401 402 2.202570 AGATGGACGCACGTACGC 60.203 61.111 16.72 0.00 36.19 4.42
402 403 0.248498 ATGAGATGGACGCACGTACG 60.248 55.000 15.01 15.01 39.50 3.67
403 404 1.478137 GATGAGATGGACGCACGTAC 58.522 55.000 0.00 0.00 0.00 3.67
404 405 0.028902 CGATGAGATGGACGCACGTA 59.971 55.000 0.00 0.00 0.00 3.57
405 406 1.226688 CGATGAGATGGACGCACGT 60.227 57.895 0.00 0.00 0.00 4.49
406 407 3.605612 CGATGAGATGGACGCACG 58.394 61.111 0.00 0.00 0.00 5.34
410 411 0.239613 ATCGAGCGATGAGATGGACG 59.760 55.000 4.37 0.00 32.98 4.79
411 412 1.402194 GGATCGAGCGATGAGATGGAC 60.402 57.143 10.42 0.00 34.60 4.02
412 413 0.884514 GGATCGAGCGATGAGATGGA 59.115 55.000 10.42 0.00 34.60 3.41
413 414 0.600057 TGGATCGAGCGATGAGATGG 59.400 55.000 10.42 0.00 34.60 3.51
414 415 1.668337 GGTGGATCGAGCGATGAGATG 60.668 57.143 10.42 0.00 34.60 2.90
415 416 0.600557 GGTGGATCGAGCGATGAGAT 59.399 55.000 10.42 0.00 34.60 2.75
416 417 1.786049 CGGTGGATCGAGCGATGAGA 61.786 60.000 22.61 0.00 39.17 3.27
417 418 1.371022 CGGTGGATCGAGCGATGAG 60.371 63.158 22.61 0.00 39.17 2.90
418 419 2.721859 CGGTGGATCGAGCGATGA 59.278 61.111 22.61 0.00 39.17 2.92
419 420 3.032609 GCGGTGGATCGAGCGATG 61.033 66.667 29.54 4.86 39.17 3.84
423 424 4.492160 TCACGCGGTGGATCGAGC 62.492 66.667 12.47 0.00 33.87 5.03
424 425 2.579787 GTCACGCGGTGGATCGAG 60.580 66.667 12.47 0.00 33.87 4.04
425 426 4.124351 GGTCACGCGGTGGATCGA 62.124 66.667 12.47 0.00 33.87 3.59
426 427 4.429212 TGGTCACGCGGTGGATCG 62.429 66.667 12.47 0.00 33.87 3.69
427 428 2.509336 CTGGTCACGCGGTGGATC 60.509 66.667 12.47 5.99 33.87 3.36
428 429 4.760047 GCTGGTCACGCGGTGGAT 62.760 66.667 12.47 0.00 33.87 3.41
451 452 3.842923 AGGATCGAGGTGCGCCAG 61.843 66.667 20.59 12.34 40.61 4.85
452 453 4.147449 CAGGATCGAGGTGCGCCA 62.147 66.667 20.59 0.00 40.61 5.69
454 455 4.521062 AGCAGGATCGAGGTGCGC 62.521 66.667 0.00 0.00 42.26 6.09
455 456 2.279120 GAGCAGGATCGAGGTGCG 60.279 66.667 9.91 0.00 42.26 5.34
456 457 1.227205 CAGAGCAGGATCGAGGTGC 60.227 63.158 8.07 8.07 37.48 5.01
457 458 0.102120 GACAGAGCAGGATCGAGGTG 59.898 60.000 0.00 0.00 0.00 4.00
458 459 1.040339 GGACAGAGCAGGATCGAGGT 61.040 60.000 0.00 0.00 0.00 3.85
459 460 1.739049 GGACAGAGCAGGATCGAGG 59.261 63.158 0.00 0.00 0.00 4.63
460 461 1.039785 TGGGACAGAGCAGGATCGAG 61.040 60.000 0.00 0.00 0.00 4.04
461 462 1.000359 TGGGACAGAGCAGGATCGA 60.000 57.895 0.00 0.00 0.00 3.59
462 463 1.142748 GTGGGACAGAGCAGGATCG 59.857 63.158 0.00 0.00 41.80 3.69
463 464 1.142748 CGTGGGACAGAGCAGGATC 59.857 63.158 0.00 0.00 41.80 3.36
464 465 2.362369 CCGTGGGACAGAGCAGGAT 61.362 63.158 0.00 0.00 41.80 3.24
465 466 2.997315 CCGTGGGACAGAGCAGGA 60.997 66.667 0.00 0.00 41.80 3.86
466 467 3.302347 GACCGTGGGACAGAGCAGG 62.302 68.421 0.00 0.00 41.80 4.85
467 468 2.262915 GACCGTGGGACAGAGCAG 59.737 66.667 0.00 0.00 41.80 4.24
468 469 2.203640 AGACCGTGGGACAGAGCA 60.204 61.111 0.00 0.00 41.80 4.26
469 470 1.248785 TACAGACCGTGGGACAGAGC 61.249 60.000 0.00 0.00 41.80 4.09
470 471 0.811915 CTACAGACCGTGGGACAGAG 59.188 60.000 0.00 0.00 41.80 3.35
471 472 1.248785 GCTACAGACCGTGGGACAGA 61.249 60.000 0.00 0.00 41.80 3.41
472 473 1.215647 GCTACAGACCGTGGGACAG 59.784 63.158 0.00 0.00 41.80 3.51
473 474 2.280552 GGCTACAGACCGTGGGACA 61.281 63.158 0.00 0.00 0.00 4.02
474 475 1.614241 ATGGCTACAGACCGTGGGAC 61.614 60.000 0.00 0.00 0.00 4.46
475 476 1.305802 ATGGCTACAGACCGTGGGA 60.306 57.895 0.00 0.00 0.00 4.37
476 477 1.144057 GATGGCTACAGACCGTGGG 59.856 63.158 0.00 0.00 0.00 4.61
477 478 1.338337 CTAGATGGCTACAGACCGTGG 59.662 57.143 0.00 0.00 0.00 4.94
478 479 2.025155 ACTAGATGGCTACAGACCGTG 58.975 52.381 0.00 0.00 0.00 4.94
479 480 2.092321 AGACTAGATGGCTACAGACCGT 60.092 50.000 0.00 0.00 27.54 4.83
480 481 2.577700 AGACTAGATGGCTACAGACCG 58.422 52.381 0.00 0.00 27.54 4.79
481 482 4.975631 TCTAGACTAGATGGCTACAGACC 58.024 47.826 8.17 0.00 34.56 3.85
482 483 8.801882 ATAATCTAGACTAGATGGCTACAGAC 57.198 38.462 22.84 0.00 44.44 3.51
487 488 9.908747 GGAGTAATAATCTAGACTAGATGGCTA 57.091 37.037 22.84 13.47 44.44 3.93
488 489 8.620177 AGGAGTAATAATCTAGACTAGATGGCT 58.380 37.037 22.84 16.01 44.44 4.75
489 490 8.817092 AGGAGTAATAATCTAGACTAGATGGC 57.183 38.462 22.84 12.49 44.44 4.40
490 491 9.403583 GGAGGAGTAATAATCTAGACTAGATGG 57.596 40.741 22.84 0.00 44.44 3.51
493 494 8.828751 GGAGGAGGAGTAATAATCTAGACTAGA 58.171 40.741 14.53 14.53 39.50 2.43
494 495 8.832735 AGGAGGAGGAGTAATAATCTAGACTAG 58.167 40.741 2.81 2.81 0.00 2.57
495 496 8.760362 AGGAGGAGGAGTAATAATCTAGACTA 57.240 38.462 0.00 0.00 0.00 2.59
496 497 7.257272 GGAGGAGGAGGAGTAATAATCTAGACT 60.257 44.444 0.00 0.00 0.00 3.24
497 498 6.888088 GGAGGAGGAGGAGTAATAATCTAGAC 59.112 46.154 0.00 0.00 0.00 2.59
498 499 6.800606 AGGAGGAGGAGGAGTAATAATCTAGA 59.199 42.308 0.00 0.00 0.00 2.43
499 500 7.039722 AGGAGGAGGAGGAGTAATAATCTAG 57.960 44.000 0.00 0.00 0.00 2.43
500 501 8.718217 ATAGGAGGAGGAGGAGTAATAATCTA 57.282 38.462 0.00 0.00 0.00 1.98
501 502 5.959547 AGGAGGAGGAGGAGTAATAATCT 57.040 43.478 0.00 0.00 0.00 2.40
504 505 9.591220 AGTATATAGGAGGAGGAGGAGTAATAA 57.409 37.037 0.00 0.00 0.00 1.40
505 506 9.005318 CAGTATATAGGAGGAGGAGGAGTAATA 57.995 40.741 0.00 0.00 0.00 0.98
506 507 7.466213 ACAGTATATAGGAGGAGGAGGAGTAAT 59.534 40.741 0.00 0.00 0.00 1.89
507 508 6.798560 ACAGTATATAGGAGGAGGAGGAGTAA 59.201 42.308 0.00 0.00 0.00 2.24
508 509 6.340868 ACAGTATATAGGAGGAGGAGGAGTA 58.659 44.000 0.00 0.00 0.00 2.59
509 510 5.174775 ACAGTATATAGGAGGAGGAGGAGT 58.825 45.833 0.00 0.00 0.00 3.85
510 511 5.789574 ACAGTATATAGGAGGAGGAGGAG 57.210 47.826 0.00 0.00 0.00 3.69
511 512 5.015391 GGAACAGTATATAGGAGGAGGAGGA 59.985 48.000 0.00 0.00 0.00 3.71
512 513 5.265989 GGAACAGTATATAGGAGGAGGAGG 58.734 50.000 0.00 0.00 0.00 4.30
513 514 5.015817 AGGGAACAGTATATAGGAGGAGGAG 59.984 48.000 0.00 0.00 0.00 3.69
514 515 4.926987 AGGGAACAGTATATAGGAGGAGGA 59.073 45.833 0.00 0.00 0.00 3.71
515 516 5.020132 CAGGGAACAGTATATAGGAGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
516 517 5.020132 CCAGGGAACAGTATATAGGAGGAG 58.980 50.000 0.00 0.00 0.00 3.69
517 518 4.202792 CCCAGGGAACAGTATATAGGAGGA 60.203 50.000 0.00 0.00 0.00 3.71
518 519 4.097418 CCCAGGGAACAGTATATAGGAGG 58.903 52.174 0.00 0.00 0.00 4.30
519 520 3.515901 GCCCAGGGAACAGTATATAGGAG 59.484 52.174 10.89 0.00 0.00 3.69
520 521 3.116512 TGCCCAGGGAACAGTATATAGGA 60.117 47.826 10.89 0.00 0.00 2.94
521 522 3.248024 TGCCCAGGGAACAGTATATAGG 58.752 50.000 10.89 0.00 0.00 2.57
522 523 4.080863 GGATGCCCAGGGAACAGTATATAG 60.081 50.000 10.89 0.00 0.00 1.31
523 524 3.844211 GGATGCCCAGGGAACAGTATATA 59.156 47.826 10.89 0.00 0.00 0.86
524 525 2.644798 GGATGCCCAGGGAACAGTATAT 59.355 50.000 10.89 0.00 0.00 0.86
525 526 2.054799 GGATGCCCAGGGAACAGTATA 58.945 52.381 10.89 0.00 0.00 1.47
526 527 0.846693 GGATGCCCAGGGAACAGTAT 59.153 55.000 10.89 0.00 0.00 2.12
527 528 1.622607 CGGATGCCCAGGGAACAGTA 61.623 60.000 10.89 0.00 0.00 2.74
528 529 2.971598 CGGATGCCCAGGGAACAGT 61.972 63.158 10.89 0.00 0.00 3.55
529 530 2.124570 CGGATGCCCAGGGAACAG 60.125 66.667 10.89 0.00 0.00 3.16
530 531 2.609299 TCGGATGCCCAGGGAACA 60.609 61.111 10.89 0.00 0.00 3.18
531 532 2.124695 GTCGGATGCCCAGGGAAC 60.125 66.667 10.89 0.00 0.00 3.62
532 533 3.781307 CGTCGGATGCCCAGGGAA 61.781 66.667 10.89 0.00 0.00 3.97
535 536 4.838152 CACCGTCGGATGCCCAGG 62.838 72.222 20.51 0.00 0.00 4.45
540 541 3.499737 CAAGGCACCGTCGGATGC 61.500 66.667 20.51 21.92 41.29 3.91
541 542 2.819595 CCAAGGCACCGTCGGATG 60.820 66.667 20.51 13.46 0.00 3.51
542 543 4.778143 GCCAAGGCACCGTCGGAT 62.778 66.667 20.51 0.00 41.49 4.18
545 546 4.379243 AGAGCCAAGGCACCGTCG 62.379 66.667 14.40 0.00 44.88 5.12
546 547 2.435059 GAGAGCCAAGGCACCGTC 60.435 66.667 14.40 1.79 44.88 4.79
547 548 2.925170 AGAGAGCCAAGGCACCGT 60.925 61.111 14.40 0.00 44.88 4.83
548 549 2.125350 GAGAGAGCCAAGGCACCG 60.125 66.667 14.40 0.00 44.88 4.94
549 550 0.957888 GTTGAGAGAGCCAAGGCACC 60.958 60.000 14.40 4.66 44.88 5.01
550 551 0.250467 TGTTGAGAGAGCCAAGGCAC 60.250 55.000 14.40 7.18 44.88 5.01
551 552 0.250467 GTGTTGAGAGAGCCAAGGCA 60.250 55.000 14.40 0.00 44.88 4.75
552 553 0.036022 AGTGTTGAGAGAGCCAAGGC 59.964 55.000 2.02 2.02 42.33 4.35
553 554 1.071385 ACAGTGTTGAGAGAGCCAAGG 59.929 52.381 0.00 0.00 0.00 3.61
554 555 2.540265 ACAGTGTTGAGAGAGCCAAG 57.460 50.000 0.00 0.00 0.00 3.61
555 556 2.289072 GCTACAGTGTTGAGAGAGCCAA 60.289 50.000 9.00 0.00 0.00 4.52
556 557 1.273606 GCTACAGTGTTGAGAGAGCCA 59.726 52.381 9.00 0.00 0.00 4.75
557 558 1.734047 CGCTACAGTGTTGAGAGAGCC 60.734 57.143 9.00 0.00 0.00 4.70
558 559 1.068194 ACGCTACAGTGTTGAGAGAGC 60.068 52.381 14.58 9.12 34.75 4.09
559 560 2.999507 ACGCTACAGTGTTGAGAGAG 57.000 50.000 14.58 4.43 34.75 3.20
567 568 3.625232 CGCACAACGCTACAGTGT 58.375 55.556 0.00 0.00 41.05 3.55
578 579 1.535015 GCAAGTAAAGTTGGCGCACAA 60.535 47.619 10.83 8.61 36.54 3.33
579 580 0.030101 GCAAGTAAAGTTGGCGCACA 59.970 50.000 10.83 1.22 0.00 4.57
580 581 0.663269 GGCAAGTAAAGTTGGCGCAC 60.663 55.000 10.83 0.00 42.40 5.34
581 582 1.657556 GGCAAGTAAAGTTGGCGCA 59.342 52.632 10.83 0.00 42.40 6.09
582 583 4.552278 GGCAAGTAAAGTTGGCGC 57.448 55.556 0.00 0.00 42.40 6.53
585 586 2.316108 ACAAGGGGCAAGTAAAGTTGG 58.684 47.619 0.03 0.00 0.00 3.77
586 587 3.057526 GCTACAAGGGGCAAGTAAAGTTG 60.058 47.826 0.00 0.00 0.00 3.16
587 588 3.154710 GCTACAAGGGGCAAGTAAAGTT 58.845 45.455 0.00 0.00 0.00 2.66
588 589 2.375509 AGCTACAAGGGGCAAGTAAAGT 59.624 45.455 0.00 0.00 0.00 2.66
589 590 3.010420 GAGCTACAAGGGGCAAGTAAAG 58.990 50.000 0.00 0.00 0.00 1.85
590 591 2.290705 GGAGCTACAAGGGGCAAGTAAA 60.291 50.000 0.00 0.00 0.00 2.01
591 592 1.280998 GGAGCTACAAGGGGCAAGTAA 59.719 52.381 0.00 0.00 0.00 2.24
592 593 0.909623 GGAGCTACAAGGGGCAAGTA 59.090 55.000 0.00 0.00 0.00 2.24
593 594 0.842467 AGGAGCTACAAGGGGCAAGT 60.842 55.000 0.00 0.00 0.00 3.16
594 595 0.107459 GAGGAGCTACAAGGGGCAAG 60.107 60.000 0.00 0.00 0.00 4.01
595 596 0.840288 TGAGGAGCTACAAGGGGCAA 60.840 55.000 0.00 0.00 0.00 4.52
596 597 0.621571 ATGAGGAGCTACAAGGGGCA 60.622 55.000 0.00 0.00 0.00 5.36
597 598 1.424638 TATGAGGAGCTACAAGGGGC 58.575 55.000 0.00 0.00 0.00 5.80
598 599 2.224402 GCTTATGAGGAGCTACAAGGGG 60.224 54.545 0.00 0.00 37.18 4.79
599 600 3.118905 GCTTATGAGGAGCTACAAGGG 57.881 52.381 0.00 0.00 37.18 3.95
607 608 1.521580 GCATCCAGCTTATGAGGAGC 58.478 55.000 9.53 3.65 41.15 4.70
608 609 1.271271 GGGCATCCAGCTTATGAGGAG 60.271 57.143 9.53 0.00 44.79 3.69
609 610 0.767375 GGGCATCCAGCTTATGAGGA 59.233 55.000 9.53 1.20 44.79 3.71
610 611 0.604780 CGGGCATCCAGCTTATGAGG 60.605 60.000 9.53 0.00 44.79 3.86
611 612 0.604780 CCGGGCATCCAGCTTATGAG 60.605 60.000 9.53 1.33 44.79 2.90
612 613 1.451504 CCGGGCATCCAGCTTATGA 59.548 57.895 9.53 0.00 44.79 2.15
613 614 2.263741 GCCGGGCATCCAGCTTATG 61.264 63.158 15.62 2.03 44.79 1.90
614 615 2.113986 GCCGGGCATCCAGCTTAT 59.886 61.111 15.62 0.00 44.79 1.73
615 616 4.189580 GGCCGGGCATCCAGCTTA 62.190 66.667 25.33 0.00 44.79 3.09
629 630 2.040009 TAATCTAGTGCGGCCAGGCC 62.040 60.000 22.33 22.33 46.75 5.19
630 631 0.035458 ATAATCTAGTGCGGCCAGGC 59.965 55.000 1.26 1.26 0.00 4.85
631 632 2.146342 CAATAATCTAGTGCGGCCAGG 58.854 52.381 2.24 0.00 0.00 4.45
632 633 1.532868 GCAATAATCTAGTGCGGCCAG 59.467 52.381 2.24 0.00 40.08 4.85
633 634 1.593196 GCAATAATCTAGTGCGGCCA 58.407 50.000 2.24 0.00 40.08 5.36
639 640 4.346418 AGGGGAGTGAGCAATAATCTAGTG 59.654 45.833 0.00 0.00 0.00 2.74
640 641 4.561752 AGGGGAGTGAGCAATAATCTAGT 58.438 43.478 0.00 0.00 0.00 2.57
641 642 4.837860 AGAGGGGAGTGAGCAATAATCTAG 59.162 45.833 0.00 0.00 0.00 2.43
642 643 4.820775 AGAGGGGAGTGAGCAATAATCTA 58.179 43.478 0.00 0.00 0.00 1.98
643 644 3.645687 GAGAGGGGAGTGAGCAATAATCT 59.354 47.826 0.00 0.00 0.00 2.40
644 645 3.645687 AGAGAGGGGAGTGAGCAATAATC 59.354 47.826 0.00 0.00 0.00 1.75
645 646 3.645687 GAGAGAGGGGAGTGAGCAATAAT 59.354 47.826 0.00 0.00 0.00 1.28
646 647 3.034635 GAGAGAGGGGAGTGAGCAATAA 58.965 50.000 0.00 0.00 0.00 1.40
647 648 2.672098 GAGAGAGGGGAGTGAGCAATA 58.328 52.381 0.00 0.00 0.00 1.90
648 649 1.494960 GAGAGAGGGGAGTGAGCAAT 58.505 55.000 0.00 0.00 0.00 3.56
649 650 0.616111 GGAGAGAGGGGAGTGAGCAA 60.616 60.000 0.00 0.00 0.00 3.91
650 651 1.000993 GGAGAGAGGGGAGTGAGCA 59.999 63.158 0.00 0.00 0.00 4.26
651 652 0.616111 TTGGAGAGAGGGGAGTGAGC 60.616 60.000 0.00 0.00 0.00 4.26
652 653 1.944177 TTTGGAGAGAGGGGAGTGAG 58.056 55.000 0.00 0.00 0.00 3.51
653 654 1.978580 GTTTTGGAGAGAGGGGAGTGA 59.021 52.381 0.00 0.00 0.00 3.41
654 655 1.699634 TGTTTTGGAGAGAGGGGAGTG 59.300 52.381 0.00 0.00 0.00 3.51
655 656 2.118403 TGTTTTGGAGAGAGGGGAGT 57.882 50.000 0.00 0.00 0.00 3.85
656 657 2.943199 GCATGTTTTGGAGAGAGGGGAG 60.943 54.545 0.00 0.00 0.00 4.30
657 658 1.004745 GCATGTTTTGGAGAGAGGGGA 59.995 52.381 0.00 0.00 0.00 4.81
658 659 1.005215 AGCATGTTTTGGAGAGAGGGG 59.995 52.381 0.00 0.00 0.00 4.79
659 660 2.089980 CAGCATGTTTTGGAGAGAGGG 58.910 52.381 0.00 0.00 0.00 4.30
660 661 1.471684 GCAGCATGTTTTGGAGAGAGG 59.528 52.381 0.00 0.00 39.31 3.69
661 662 1.471684 GGCAGCATGTTTTGGAGAGAG 59.528 52.381 0.00 0.00 39.31 3.20
662 663 1.538047 GGCAGCATGTTTTGGAGAGA 58.462 50.000 0.00 0.00 39.31 3.10
663 664 0.529378 GGGCAGCATGTTTTGGAGAG 59.471 55.000 0.00 0.00 39.31 3.20
664 665 1.243342 CGGGCAGCATGTTTTGGAGA 61.243 55.000 0.00 0.00 39.31 3.71
665 666 1.213537 CGGGCAGCATGTTTTGGAG 59.786 57.895 0.00 0.00 39.31 3.86
666 667 1.228398 TCGGGCAGCATGTTTTGGA 60.228 52.632 0.00 0.00 39.31 3.53
667 668 1.213537 CTCGGGCAGCATGTTTTGG 59.786 57.895 0.00 0.00 39.31 3.28
668 669 0.387622 CACTCGGGCAGCATGTTTTG 60.388 55.000 0.00 0.00 39.31 2.44
669 670 0.537143 TCACTCGGGCAGCATGTTTT 60.537 50.000 0.00 0.00 39.31 2.43
670 671 0.957395 CTCACTCGGGCAGCATGTTT 60.957 55.000 0.00 0.00 39.31 2.83
671 672 1.376424 CTCACTCGGGCAGCATGTT 60.376 57.895 0.00 0.00 39.31 2.71
672 673 1.257750 TACTCACTCGGGCAGCATGT 61.258 55.000 0.00 0.00 39.31 3.21
673 674 0.105593 ATACTCACTCGGGCAGCATG 59.894 55.000 0.00 0.00 40.87 4.06
674 675 1.704641 TATACTCACTCGGGCAGCAT 58.295 50.000 0.00 0.00 0.00 3.79
675 676 1.341209 CATATACTCACTCGGGCAGCA 59.659 52.381 0.00 0.00 0.00 4.41
676 677 1.937108 GCATATACTCACTCGGGCAGC 60.937 57.143 0.00 0.00 0.00 5.25
677 678 1.337260 GGCATATACTCACTCGGGCAG 60.337 57.143 0.00 0.00 0.00 4.85
678 679 0.679505 GGCATATACTCACTCGGGCA 59.320 55.000 0.00 0.00 0.00 5.36
679 680 0.969894 AGGCATATACTCACTCGGGC 59.030 55.000 0.00 0.00 0.00 6.13
680 681 1.337260 GCAGGCATATACTCACTCGGG 60.337 57.143 0.00 0.00 0.00 5.14
681 682 1.341209 TGCAGGCATATACTCACTCGG 59.659 52.381 0.00 0.00 0.00 4.63
682 683 2.608998 CCTGCAGGCATATACTCACTCG 60.609 54.545 22.33 0.00 0.00 4.18
683 684 2.289320 CCCTGCAGGCATATACTCACTC 60.289 54.545 28.39 0.00 0.00 3.51
684 685 1.696336 CCCTGCAGGCATATACTCACT 59.304 52.381 28.39 0.00 0.00 3.41
685 686 1.417890 ACCCTGCAGGCATATACTCAC 59.582 52.381 28.39 0.00 40.58 3.51
686 687 1.417517 CACCCTGCAGGCATATACTCA 59.582 52.381 28.39 0.00 40.58 3.41
687 688 1.694150 TCACCCTGCAGGCATATACTC 59.306 52.381 28.39 0.00 40.58 2.59
688 689 1.806496 TCACCCTGCAGGCATATACT 58.194 50.000 28.39 0.00 40.58 2.12
689 690 2.158755 ACTTCACCCTGCAGGCATATAC 60.159 50.000 28.39 0.00 40.58 1.47
690 691 2.104792 GACTTCACCCTGCAGGCATATA 59.895 50.000 28.39 9.70 40.58 0.86
691 692 0.921896 ACTTCACCCTGCAGGCATAT 59.078 50.000 28.39 9.24 40.58 1.78
692 693 0.253044 GACTTCACCCTGCAGGCATA 59.747 55.000 28.39 11.15 40.58 3.14
693 694 1.001641 GACTTCACCCTGCAGGCAT 60.002 57.895 28.39 14.78 40.58 4.40
694 695 2.149383 AGACTTCACCCTGCAGGCA 61.149 57.895 28.39 10.30 40.58 4.75
695 696 1.673665 CAGACTTCACCCTGCAGGC 60.674 63.158 28.39 11.76 40.58 4.85
696 697 0.109342 AACAGACTTCACCCTGCAGG 59.891 55.000 26.87 26.87 43.78 4.85
697 698 1.972872 AAACAGACTTCACCCTGCAG 58.027 50.000 6.78 6.78 33.90 4.41
698 699 2.023673 CAAAACAGACTTCACCCTGCA 58.976 47.619 0.00 0.00 33.90 4.41
699 700 2.297701 TCAAAACAGACTTCACCCTGC 58.702 47.619 0.00 0.00 33.90 4.85
700 701 3.066760 GGTTCAAAACAGACTTCACCCTG 59.933 47.826 0.00 0.00 36.53 4.45
701 702 3.288092 GGTTCAAAACAGACTTCACCCT 58.712 45.455 0.00 0.00 0.00 4.34
702 703 2.361119 GGGTTCAAAACAGACTTCACCC 59.639 50.000 0.00 0.00 36.07 4.61
703 704 3.066760 CAGGGTTCAAAACAGACTTCACC 59.933 47.826 0.00 0.00 0.00 4.02
1559 1586 7.446106 TTCACTAGCCTAAAATCATCCCTAA 57.554 36.000 0.00 0.00 0.00 2.69
1608 1636 9.926751 CATTACATTGCTCTAAATTCAGTACAG 57.073 33.333 0.00 0.00 0.00 2.74
1675 1703 8.139989 GGCACTGCATATCTCATTAAAAGAATT 58.860 33.333 2.82 0.00 0.00 2.17
1838 1871 9.248291 CCATGTTAGAATGTGGTTATATTTTGC 57.752 33.333 0.00 0.00 0.00 3.68
1983 2165 1.239347 GGAGAGGAACAGCAACAACC 58.761 55.000 0.00 0.00 0.00 3.77
2224 2406 3.243501 ACAGCAAATACACAACCTGCAAG 60.244 43.478 0.00 0.00 35.44 4.01
2548 2730 1.978361 AAGAGAAGAGGGGGAAGCAT 58.022 50.000 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.