Multiple sequence alignment - TraesCS5D01G318600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G318600 chr5D 100.000 2702 0 0 1 2702 411626627 411629328 0.000000e+00 4990.0
1 TraesCS5D01G318600 chr5D 80.216 925 136 29 813 1700 411196551 411197465 0.000000e+00 651.0
2 TraesCS5D01G318600 chr5D 78.912 588 94 20 1067 1630 411225750 411225169 3.290000e-99 372.0
3 TraesCS5D01G318600 chr5D 85.503 338 44 5 1067 1402 410444223 410444557 5.540000e-92 348.0
4 TraesCS5D01G318600 chr5A 95.255 1981 77 9 557 2531 523449641 523451610 0.000000e+00 3121.0
5 TraesCS5D01G318600 chr5A 80.238 926 139 25 809 1700 523136504 523137419 0.000000e+00 656.0
6 TraesCS5D01G318600 chr5A 86.027 365 42 6 2 361 523448489 523448849 1.520000e-102 383.0
7 TraesCS5D01G318600 chr5A 84.110 365 48 8 1067 1423 522066671 522067033 7.160000e-91 344.0
8 TraesCS5D01G318600 chr5A 84.091 88 9 3 438 524 523449195 523449278 2.230000e-11 80.5
9 TraesCS5D01G318600 chr5B 89.885 2264 156 34 272 2526 493930725 493932924 0.000000e+00 2844.0
10 TraesCS5D01G318600 chr5B 80.216 925 136 28 813 1700 493673860 493674774 0.000000e+00 651.0
11 TraesCS5D01G318600 chr5B 84.358 358 52 4 1068 1423 492619519 492619874 5.540000e-92 348.0
12 TraesCS5D01G318600 chr2B 93.785 177 9 2 2526 2702 66219778 66219952 5.740000e-67 265.0
13 TraesCS5D01G318600 chr2B 92.529 174 13 0 2529 2702 151649507 151649334 1.610000e-62 250.0
14 TraesCS5D01G318600 chr7A 93.642 173 11 0 2530 2702 631367419 631367591 2.670000e-65 259.0
15 TraesCS5D01G318600 chr1B 93.143 175 12 0 2528 2702 520524974 520524800 9.600000e-65 257.0
16 TraesCS5D01G318600 chr1B 92.614 176 13 0 2527 2702 166580292 166580467 1.240000e-63 254.0
17 TraesCS5D01G318600 chr2D 93.064 173 12 0 2530 2702 10049028 10049200 1.240000e-63 254.0
18 TraesCS5D01G318600 chr2A 93.103 174 11 1 2530 2702 362446136 362445963 1.240000e-63 254.0
19 TraesCS5D01G318600 chr7D 92.571 175 13 0 2528 2702 31062084 31061910 4.470000e-63 252.0
20 TraesCS5D01G318600 chr6B 92.529 174 13 0 2529 2702 523343636 523343809 1.610000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G318600 chr5D 411626627 411629328 2701 False 4990.000000 4990 100.000000 1 2702 1 chr5D.!!$F3 2701
1 TraesCS5D01G318600 chr5D 411196551 411197465 914 False 651.000000 651 80.216000 813 1700 1 chr5D.!!$F2 887
2 TraesCS5D01G318600 chr5D 411225169 411225750 581 True 372.000000 372 78.912000 1067 1630 1 chr5D.!!$R1 563
3 TraesCS5D01G318600 chr5A 523448489 523451610 3121 False 1194.833333 3121 88.457667 2 2531 3 chr5A.!!$F3 2529
4 TraesCS5D01G318600 chr5A 523136504 523137419 915 False 656.000000 656 80.238000 809 1700 1 chr5A.!!$F2 891
5 TraesCS5D01G318600 chr5B 493930725 493932924 2199 False 2844.000000 2844 89.885000 272 2526 1 chr5B.!!$F3 2254
6 TraesCS5D01G318600 chr5B 493673860 493674774 914 False 651.000000 651 80.216000 813 1700 1 chr5B.!!$F2 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1576 0.179045 AACCTGCTCTCACACACCAC 60.179 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2608 3297 0.182775 ACTTTTTCTCCCGCCACAGT 59.817 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.083003 GGTGTGCCTCATTTTACGATTTCA 60.083 41.667 0.00 0.00 0.00 2.69
34 35 5.391950 CCTCATTTTACGATTTCACACAGGG 60.392 44.000 0.00 0.00 0.00 4.45
37 38 0.981183 TACGATTTCACACAGGGCCT 59.019 50.000 0.00 0.00 0.00 5.19
40 41 1.002134 ATTTCACACAGGGCCTCGG 60.002 57.895 0.95 0.06 0.00 4.63
45 46 1.026718 CACACAGGGCCTCGGATTTC 61.027 60.000 0.95 0.00 0.00 2.17
48 49 1.815421 CAGGGCCTCGGATTTCGTG 60.815 63.158 0.95 0.00 40.32 4.35
49 50 1.987855 AGGGCCTCGGATTTCGTGA 60.988 57.895 0.00 0.00 40.32 4.35
129 132 6.176896 TGCTAAAACACAACTAGATATGCCA 58.823 36.000 0.00 0.00 0.00 4.92
132 135 9.003658 GCTAAAACACAACTAGATATGCCATAT 57.996 33.333 0.00 0.00 0.00 1.78
192 195 6.128282 ACGCGAAGATTCATGTGAGTATTTTT 60.128 34.615 15.93 0.00 0.00 1.94
221 224 7.962964 ATTTCTGTTTGATCGAGTCACTTAA 57.037 32.000 0.00 0.00 36.32 1.85
227 230 5.530519 TTGATCGAGTCACTTAAATGTGC 57.469 39.130 0.00 0.00 36.32 4.57
228 231 4.565022 TGATCGAGTCACTTAAATGTGCA 58.435 39.130 0.00 0.00 37.81 4.57
229 232 4.994217 TGATCGAGTCACTTAAATGTGCAA 59.006 37.500 0.00 0.00 37.81 4.08
230 233 5.643348 TGATCGAGTCACTTAAATGTGCAAT 59.357 36.000 0.00 0.00 37.81 3.56
231 234 6.816140 TGATCGAGTCACTTAAATGTGCAATA 59.184 34.615 0.00 0.00 37.81 1.90
232 235 6.403333 TCGAGTCACTTAAATGTGCAATAC 57.597 37.500 0.00 0.00 37.81 1.89
236 239 8.440059 CGAGTCACTTAAATGTGCAATACTTAA 58.560 33.333 0.00 0.00 37.81 1.85
256 259 7.823635 ACTTAAGACACCTCTAGATATACCCA 58.176 38.462 10.09 0.00 0.00 4.51
257 260 7.945664 ACTTAAGACACCTCTAGATATACCCAG 59.054 40.741 10.09 0.00 0.00 4.45
258 261 6.532119 AAGACACCTCTAGATATACCCAGA 57.468 41.667 0.00 0.00 0.00 3.86
259 262 6.728366 AGACACCTCTAGATATACCCAGAT 57.272 41.667 0.00 0.00 0.00 2.90
260 263 7.832473 AGACACCTCTAGATATACCCAGATA 57.168 40.000 0.00 0.00 0.00 1.98
261 264 7.867921 AGACACCTCTAGATATACCCAGATAG 58.132 42.308 0.00 0.00 0.00 2.08
262 265 7.685052 AGACACCTCTAGATATACCCAGATAGA 59.315 40.741 0.00 0.00 0.00 1.98
263 266 7.635648 ACACCTCTAGATATACCCAGATAGAC 58.364 42.308 0.00 0.00 0.00 2.59
264 267 7.239984 ACACCTCTAGATATACCCAGATAGACA 59.760 40.741 0.00 0.00 0.00 3.41
265 268 7.554835 CACCTCTAGATATACCCAGATAGACAC 59.445 44.444 0.00 0.00 0.00 3.67
266 269 7.462972 ACCTCTAGATATACCCAGATAGACACT 59.537 40.741 0.00 0.00 0.00 3.55
295 301 0.673985 TCCAGTTCAGTCGGTCACAG 59.326 55.000 0.00 0.00 0.00 3.66
313 319 3.901797 GAAGGGCCACTCCACACGG 62.902 68.421 6.18 0.00 36.21 4.94
326 332 4.082523 CACGGGCGTGGAGGTGAT 62.083 66.667 0.00 0.00 42.00 3.06
334 340 1.293924 CGTGGAGGTGATTGATGAGC 58.706 55.000 0.00 0.00 0.00 4.26
370 376 2.887152 AGTGTTCTTTTGCACTGGATCC 59.113 45.455 4.20 4.20 43.45 3.36
401 694 1.153628 GTACGCTCAATCTGGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
423 716 5.623673 CGTTTGTGATTGCAAAAGTAGGTAC 59.376 40.000 1.71 0.00 39.65 3.34
428 721 5.062308 GTGATTGCAAAAGTAGGTACGAGAG 59.938 44.000 1.71 0.00 0.00 3.20
432 725 4.167268 GCAAAAGTAGGTACGAGAGAGTG 58.833 47.826 0.00 0.00 0.00 3.51
436 729 1.401199 GTAGGTACGAGAGAGTGGTGC 59.599 57.143 0.00 0.00 0.00 5.01
493 786 9.796120 TTTCTCTGTGTTAAACATACTTTTTGG 57.204 29.630 0.00 0.00 38.39 3.28
494 787 7.422399 TCTCTGTGTTAAACATACTTTTTGGC 58.578 34.615 0.00 0.00 38.39 4.52
496 789 5.282510 TGTGTTAAACATACTTTTTGGCGG 58.717 37.500 0.00 0.00 32.36 6.13
498 791 4.239304 GTTAAACATACTTTTTGGCGGGG 58.761 43.478 0.00 0.00 0.00 5.73
499 792 2.003937 AACATACTTTTTGGCGGGGT 57.996 45.000 0.00 0.00 0.00 4.95
500 793 2.883122 ACATACTTTTTGGCGGGGTA 57.117 45.000 0.00 0.00 0.00 3.69
501 794 2.439409 ACATACTTTTTGGCGGGGTAC 58.561 47.619 0.00 0.00 0.00 3.34
524 821 5.704515 ACATACTGTACACGAGACTGTAGTT 59.295 40.000 0.00 0.00 35.52 2.24
532 829 6.674694 ACACGAGACTGTAGTTATACGATT 57.325 37.500 0.00 0.00 34.39 3.34
551 848 5.047847 CGATTAGAGGATTTGTAAAGGCGA 58.952 41.667 0.00 0.00 0.00 5.54
587 1214 0.547471 TCCATCTTGGTCAGGGAGCA 60.547 55.000 0.00 0.00 39.03 4.26
598 1225 2.997315 GGGAGCAAAACCTGGGGC 60.997 66.667 0.00 0.00 0.00 5.80
772 1399 2.100197 CACGAGAAGGATCCACCACTA 58.900 52.381 15.82 0.00 42.04 2.74
806 1433 3.873952 CACGAGAAGGATCCTTTGGATTC 59.126 47.826 27.68 14.17 43.27 2.52
853 1480 3.869272 CGATGCCGCTTGTCCAGC 61.869 66.667 0.00 0.00 46.31 4.85
941 1572 0.250038 GCTCAACCTGCTCTCACACA 60.250 55.000 0.00 0.00 0.00 3.72
945 1576 0.179045 AACCTGCTCTCACACACCAC 60.179 55.000 0.00 0.00 0.00 4.16
949 1584 0.829990 TGCTCTCACACACCACAGAA 59.170 50.000 0.00 0.00 0.00 3.02
1010 1648 2.202919 TGCCGCGATGGACATGAG 60.203 61.111 8.23 0.00 42.00 2.90
1736 2411 3.198863 CTGAATCAGCTGCTTTGACAC 57.801 47.619 9.47 0.00 0.00 3.67
1742 2417 3.593096 TCAGCTGCTTTGACACTCTATG 58.407 45.455 9.47 0.00 0.00 2.23
1851 2526 3.599046 GCAATCAGATGCGGTTCTAAG 57.401 47.619 0.00 0.00 36.45 2.18
1852 2527 2.286654 GCAATCAGATGCGGTTCTAAGC 60.287 50.000 0.00 0.00 36.45 3.09
1932 2613 2.184322 CGTGATGGTCCCGGACAG 59.816 66.667 19.43 0.00 33.68 3.51
1948 2629 1.519455 CAGACGGCGACAGGATTCC 60.519 63.158 16.62 0.00 0.00 3.01
1956 2637 1.066143 GCGACAGGATTCCAAAGGAGA 60.066 52.381 5.29 0.00 31.21 3.71
1962 2643 4.468153 ACAGGATTCCAAAGGAGAGTACTC 59.532 45.833 15.41 15.41 41.94 2.59
2215 2896 1.469335 CCGCGCCTCCCTTCCTATAA 61.469 60.000 0.00 0.00 0.00 0.98
2301 2986 6.118170 AGATGACATGTGAACCTAGATTTGG 58.882 40.000 1.15 0.00 0.00 3.28
2513 3202 8.184192 ACATTGTATTTATTCTTGTACTGCTGC 58.816 33.333 0.00 0.00 0.00 5.25
2516 3205 8.105097 TGTATTTATTCTTGTACTGCTGCAAA 57.895 30.769 3.02 0.00 0.00 3.68
2526 3215 1.068588 ACTGCTGCAAACGTCTCAGTA 59.931 47.619 3.02 7.55 33.56 2.74
2527 3216 1.457303 CTGCTGCAAACGTCTCAGTAC 59.543 52.381 3.02 0.00 0.00 2.73
2528 3217 1.202475 TGCTGCAAACGTCTCAGTACA 60.202 47.619 0.00 2.38 0.00 2.90
2529 3218 2.069273 GCTGCAAACGTCTCAGTACAT 58.931 47.619 11.55 0.00 0.00 2.29
2530 3219 3.250744 GCTGCAAACGTCTCAGTACATA 58.749 45.455 11.55 0.00 0.00 2.29
2531 3220 3.060895 GCTGCAAACGTCTCAGTACATAC 59.939 47.826 11.55 0.00 0.00 2.39
2532 3221 4.486090 CTGCAAACGTCTCAGTACATACT 58.514 43.478 0.00 0.00 36.90 2.12
2533 3222 4.482386 TGCAAACGTCTCAGTACATACTC 58.518 43.478 0.00 0.00 33.46 2.59
2534 3223 3.858238 GCAAACGTCTCAGTACATACTCC 59.142 47.826 0.00 0.00 33.46 3.85
2535 3224 4.421948 CAAACGTCTCAGTACATACTCCC 58.578 47.826 0.00 0.00 33.46 4.30
2536 3225 3.648507 ACGTCTCAGTACATACTCCCT 57.351 47.619 0.00 0.00 33.46 4.20
2537 3226 3.543665 ACGTCTCAGTACATACTCCCTC 58.456 50.000 0.00 0.00 33.46 4.30
2538 3227 2.879646 CGTCTCAGTACATACTCCCTCC 59.120 54.545 0.00 0.00 33.46 4.30
2539 3228 3.684697 CGTCTCAGTACATACTCCCTCCA 60.685 52.174 0.00 0.00 33.46 3.86
2540 3229 4.475345 GTCTCAGTACATACTCCCTCCAT 58.525 47.826 0.00 0.00 33.46 3.41
2541 3230 4.896482 GTCTCAGTACATACTCCCTCCATT 59.104 45.833 0.00 0.00 33.46 3.16
2542 3231 5.010213 GTCTCAGTACATACTCCCTCCATTC 59.990 48.000 0.00 0.00 33.46 2.67
2543 3232 4.223953 TCAGTACATACTCCCTCCATTCC 58.776 47.826 0.00 0.00 33.46 3.01
2544 3233 3.967326 CAGTACATACTCCCTCCATTCCA 59.033 47.826 0.00 0.00 33.46 3.53
2545 3234 4.408921 CAGTACATACTCCCTCCATTCCAA 59.591 45.833 0.00 0.00 33.46 3.53
2546 3235 5.036916 AGTACATACTCCCTCCATTCCAAA 58.963 41.667 0.00 0.00 0.00 3.28
2547 3236 4.946160 ACATACTCCCTCCATTCCAAAA 57.054 40.909 0.00 0.00 0.00 2.44
2548 3237 5.472301 ACATACTCCCTCCATTCCAAAAT 57.528 39.130 0.00 0.00 0.00 1.82
2549 3238 6.590656 ACATACTCCCTCCATTCCAAAATA 57.409 37.500 0.00 0.00 0.00 1.40
2550 3239 7.166758 ACATACTCCCTCCATTCCAAAATAT 57.833 36.000 0.00 0.00 0.00 1.28
2551 3240 8.287904 ACATACTCCCTCCATTCCAAAATATA 57.712 34.615 0.00 0.00 0.00 0.86
2552 3241 8.386264 ACATACTCCCTCCATTCCAAAATATAG 58.614 37.037 0.00 0.00 0.00 1.31
2553 3242 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2554 3243 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2555 3244 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2556 3245 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2557 3246 4.821805 CCTCCATTCCAAAATATAGTGCGT 59.178 41.667 0.00 0.00 0.00 5.24
2558 3247 5.049405 CCTCCATTCCAAAATATAGTGCGTC 60.049 44.000 0.00 0.00 0.00 5.19
2559 3248 4.819630 TCCATTCCAAAATATAGTGCGTCC 59.180 41.667 0.00 0.00 0.00 4.79
2560 3249 4.319477 CCATTCCAAAATATAGTGCGTCCG 60.319 45.833 0.00 0.00 0.00 4.79
2561 3250 2.206750 TCCAAAATATAGTGCGTCCGC 58.793 47.619 4.42 4.42 42.35 5.54
2571 3260 3.479269 GCGTCCGCACTTTCCGAG 61.479 66.667 6.82 0.00 41.49 4.63
2572 3261 2.809601 CGTCCGCACTTTCCGAGG 60.810 66.667 0.00 0.00 0.00 4.63
2573 3262 2.342648 GTCCGCACTTTCCGAGGT 59.657 61.111 0.00 0.00 0.00 3.85
2574 3263 1.737008 GTCCGCACTTTCCGAGGTC 60.737 63.158 0.00 0.00 0.00 3.85
2575 3264 2.434359 CCGCACTTTCCGAGGTCC 60.434 66.667 0.00 0.00 0.00 4.46
2576 3265 2.342279 CGCACTTTCCGAGGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
2577 3266 1.301401 CGCACTTTCCGAGGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
2578 3267 1.566018 CGCACTTTCCGAGGTCCAAC 61.566 60.000 0.00 0.00 0.00 3.77
2579 3268 0.250338 GCACTTTCCGAGGTCCAACT 60.250 55.000 0.00 0.00 0.00 3.16
2580 3269 1.814248 GCACTTTCCGAGGTCCAACTT 60.814 52.381 0.00 0.00 0.00 2.66
2581 3270 2.572290 CACTTTCCGAGGTCCAACTTT 58.428 47.619 0.00 0.00 0.00 2.66
2582 3271 2.290641 CACTTTCCGAGGTCCAACTTTG 59.709 50.000 0.00 0.00 0.00 2.77
2583 3272 2.171870 ACTTTCCGAGGTCCAACTTTGA 59.828 45.455 0.00 0.00 0.00 2.69
2584 3273 3.181443 ACTTTCCGAGGTCCAACTTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
2585 3274 2.762535 TCCGAGGTCCAACTTTGATC 57.237 50.000 0.00 0.00 0.00 2.92
2586 3275 1.974957 TCCGAGGTCCAACTTTGATCA 59.025 47.619 0.00 0.00 0.00 2.92
2587 3276 2.571653 TCCGAGGTCCAACTTTGATCAT 59.428 45.455 0.00 0.00 0.00 2.45
2588 3277 3.772572 TCCGAGGTCCAACTTTGATCATA 59.227 43.478 0.00 0.00 0.00 2.15
2589 3278 4.224147 TCCGAGGTCCAACTTTGATCATAA 59.776 41.667 0.00 0.00 0.00 1.90
2590 3279 4.941263 CCGAGGTCCAACTTTGATCATAAA 59.059 41.667 0.00 0.00 0.00 1.40
2591 3280 5.590259 CCGAGGTCCAACTTTGATCATAAAT 59.410 40.000 0.00 0.00 0.00 1.40
2592 3281 6.095440 CCGAGGTCCAACTTTGATCATAAATT 59.905 38.462 0.00 0.00 0.00 1.82
2593 3282 7.362920 CCGAGGTCCAACTTTGATCATAAATTT 60.363 37.037 0.00 0.00 0.00 1.82
2594 3283 8.673711 CGAGGTCCAACTTTGATCATAAATTTA 58.326 33.333 0.00 0.00 0.00 1.40
2597 3286 9.366216 GGTCCAACTTTGATCATAAATTTAACC 57.634 33.333 1.21 0.00 0.00 2.85
2598 3287 9.921637 GTCCAACTTTGATCATAAATTTAACCA 57.078 29.630 1.21 0.00 0.00 3.67
2606 3295 8.973835 TGATCATAAATTTAACCAACGAAACC 57.026 30.769 1.21 0.00 0.00 3.27
2607 3296 7.751348 TGATCATAAATTTAACCAACGAAACCG 59.249 33.333 1.21 0.00 0.00 4.44
2608 3297 7.199541 TCATAAATTTAACCAACGAAACCGA 57.800 32.000 1.21 0.00 0.00 4.69
2609 3298 7.076983 TCATAAATTTAACCAACGAAACCGAC 58.923 34.615 1.21 0.00 0.00 4.79
2610 3299 5.503662 AAATTTAACCAACGAAACCGACT 57.496 34.783 0.00 0.00 0.00 4.18
2611 3300 3.948196 TTTAACCAACGAAACCGACTG 57.052 42.857 0.00 0.00 0.00 3.51
2612 3301 2.600470 TAACCAACGAAACCGACTGT 57.400 45.000 0.00 0.00 0.00 3.55
2613 3302 1.011333 AACCAACGAAACCGACTGTG 58.989 50.000 0.00 0.00 0.00 3.66
2614 3303 0.812412 ACCAACGAAACCGACTGTGG 60.812 55.000 0.00 0.00 0.00 4.17
2615 3304 1.278637 CAACGAAACCGACTGTGGC 59.721 57.895 0.00 0.00 0.00 5.01
2616 3305 2.241880 AACGAAACCGACTGTGGCG 61.242 57.895 0.00 0.00 0.00 5.69
2622 3311 3.691342 CCGACTGTGGCGGGAGAA 61.691 66.667 3.58 0.00 44.87 2.87
2623 3312 2.342279 CGACTGTGGCGGGAGAAA 59.658 61.111 0.00 0.00 0.00 2.52
2624 3313 1.301401 CGACTGTGGCGGGAGAAAA 60.301 57.895 0.00 0.00 0.00 2.29
2625 3314 0.882927 CGACTGTGGCGGGAGAAAAA 60.883 55.000 0.00 0.00 0.00 1.94
2626 3315 0.875059 GACTGTGGCGGGAGAAAAAG 59.125 55.000 0.00 0.00 0.00 2.27
2627 3316 0.182775 ACTGTGGCGGGAGAAAAAGT 59.817 50.000 0.00 0.00 0.00 2.66
2628 3317 1.318576 CTGTGGCGGGAGAAAAAGTT 58.681 50.000 0.00 0.00 0.00 2.66
2629 3318 2.158726 ACTGTGGCGGGAGAAAAAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
2630 3319 3.081804 CTGTGGCGGGAGAAAAAGTTAT 58.918 45.455 0.00 0.00 0.00 1.89
2631 3320 4.258543 CTGTGGCGGGAGAAAAAGTTATA 58.741 43.478 0.00 0.00 0.00 0.98
2632 3321 4.004982 TGTGGCGGGAGAAAAAGTTATAC 58.995 43.478 0.00 0.00 0.00 1.47
2633 3322 4.004982 GTGGCGGGAGAAAAAGTTATACA 58.995 43.478 0.00 0.00 0.00 2.29
2634 3323 4.456566 GTGGCGGGAGAAAAAGTTATACAA 59.543 41.667 0.00 0.00 0.00 2.41
2635 3324 5.124936 GTGGCGGGAGAAAAAGTTATACAAT 59.875 40.000 0.00 0.00 0.00 2.71
2636 3325 5.712917 TGGCGGGAGAAAAAGTTATACAATT 59.287 36.000 0.00 0.00 0.00 2.32
2637 3326 6.033966 GGCGGGAGAAAAAGTTATACAATTG 58.966 40.000 3.24 3.24 0.00 2.32
2638 3327 6.127842 GGCGGGAGAAAAAGTTATACAATTGA 60.128 38.462 13.59 0.00 0.00 2.57
2639 3328 7.309920 GCGGGAGAAAAAGTTATACAATTGAA 58.690 34.615 13.59 0.00 0.00 2.69
2640 3329 7.810759 GCGGGAGAAAAAGTTATACAATTGAAA 59.189 33.333 13.59 0.00 0.00 2.69
2641 3330 9.685828 CGGGAGAAAAAGTTATACAATTGAAAA 57.314 29.630 13.59 0.10 0.00 2.29
2680 3369 9.807649 ATGAATTCATTGGTATAACTTTTGCTC 57.192 29.630 15.36 0.00 31.37 4.26
2681 3370 8.250332 TGAATTCATTGGTATAACTTTTGCTCC 58.750 33.333 3.38 0.00 0.00 4.70
2682 3371 6.524101 TTCATTGGTATAACTTTTGCTCCC 57.476 37.500 0.00 0.00 0.00 4.30
2683 3372 4.638421 TCATTGGTATAACTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
2684 3373 2.361789 TGGTATAACTTTTGCTCCCGC 58.638 47.619 0.00 0.00 0.00 6.13
2685 3374 1.674441 GGTATAACTTTTGCTCCCGCC 59.326 52.381 0.00 0.00 34.43 6.13
2686 3375 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
2687 3376 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
2688 3377 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
2689 3378 4.107051 CTTTTGCTCCCGCCGCAG 62.107 66.667 0.00 0.00 38.80 5.18
2690 3379 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.851558 GTGAAATCGTAAAATGAGGCACAC 59.148 41.667 0.00 0.00 0.00 3.82
8 9 4.517075 TGTGTGAAATCGTAAAATGAGGCA 59.483 37.500 0.00 0.00 0.00 4.75
12 13 4.083003 GCCCTGTGTGAAATCGTAAAATGA 60.083 41.667 0.00 0.00 0.00 2.57
27 28 1.299976 GAAATCCGAGGCCCTGTGT 59.700 57.895 0.00 0.00 0.00 3.72
34 35 2.174319 GGCTCACGAAATCCGAGGC 61.174 63.158 0.00 0.00 43.85 4.70
37 38 2.183300 CGGGCTCACGAAATCCGA 59.817 61.111 0.00 0.00 42.94 4.55
40 41 3.202706 GGCCGGGCTCACGAAATC 61.203 66.667 22.87 0.00 35.47 2.17
112 115 9.440773 CAATACATATGGCATATCTAGTTGTGT 57.559 33.333 16.95 12.97 0.00 3.72
124 127 1.200716 GCTGCGCAATACATATGGCAT 59.799 47.619 13.05 4.88 32.01 4.40
129 132 4.887748 AGACTTAGCTGCGCAATACATAT 58.112 39.130 13.05 0.00 0.00 1.78
132 135 2.672874 CAAGACTTAGCTGCGCAATACA 59.327 45.455 13.05 0.00 0.00 2.29
144 147 7.478667 GCGTAAAATCAATGTCACAAGACTTAG 59.521 37.037 0.00 0.00 45.20 2.18
192 195 7.872993 AGTGACTCGATCAAACAGAAATAGAAA 59.127 33.333 0.00 0.00 39.72 2.52
201 204 7.011773 CACATTTAAGTGACTCGATCAAACAG 58.988 38.462 4.81 0.00 42.05 3.16
210 213 6.408858 AGTATTGCACATTTAAGTGACTCG 57.591 37.500 4.81 0.00 42.05 4.18
221 224 6.476378 AGAGGTGTCTTAAGTATTGCACATT 58.524 36.000 1.63 0.00 0.00 2.71
229 232 9.978336 GGGTATATCTAGAGGTGTCTTAAGTAT 57.022 37.037 1.63 0.00 33.84 2.12
230 233 8.952602 TGGGTATATCTAGAGGTGTCTTAAGTA 58.047 37.037 1.63 0.00 33.84 2.24
231 234 7.823635 TGGGTATATCTAGAGGTGTCTTAAGT 58.176 38.462 1.63 0.00 33.84 2.24
232 235 8.164733 TCTGGGTATATCTAGAGGTGTCTTAAG 58.835 40.741 0.00 0.00 33.84 1.85
236 239 6.728366 ATCTGGGTATATCTAGAGGTGTCT 57.272 41.667 5.24 0.00 36.75 3.41
252 255 7.147707 GGAGTATGTTTTAGTGTCTATCTGGGT 60.148 40.741 0.00 0.00 0.00 4.51
253 256 7.147724 TGGAGTATGTTTTAGTGTCTATCTGGG 60.148 40.741 0.00 0.00 0.00 4.45
256 259 8.596781 ACTGGAGTATGTTTTAGTGTCTATCT 57.403 34.615 0.00 0.00 0.00 1.98
257 260 9.303537 GAACTGGAGTATGTTTTAGTGTCTATC 57.696 37.037 0.00 0.00 0.00 2.08
258 261 8.812972 TGAACTGGAGTATGTTTTAGTGTCTAT 58.187 33.333 0.00 0.00 0.00 1.98
259 262 8.185506 TGAACTGGAGTATGTTTTAGTGTCTA 57.814 34.615 0.00 0.00 0.00 2.59
260 263 7.062749 TGAACTGGAGTATGTTTTAGTGTCT 57.937 36.000 0.00 0.00 0.00 3.41
261 264 6.929606 ACTGAACTGGAGTATGTTTTAGTGTC 59.070 38.462 0.00 0.00 0.00 3.67
262 265 6.827727 ACTGAACTGGAGTATGTTTTAGTGT 58.172 36.000 0.00 0.00 0.00 3.55
263 266 6.089551 CGACTGAACTGGAGTATGTTTTAGTG 59.910 42.308 0.00 0.00 30.15 2.74
264 267 6.157211 CGACTGAACTGGAGTATGTTTTAGT 58.843 40.000 0.00 0.00 31.52 2.24
265 268 5.577164 CCGACTGAACTGGAGTATGTTTTAG 59.423 44.000 0.00 0.00 0.00 1.85
266 269 5.011329 ACCGACTGAACTGGAGTATGTTTTA 59.989 40.000 0.00 0.00 0.00 1.52
269 275 2.897969 ACCGACTGAACTGGAGTATGTT 59.102 45.455 0.00 0.00 0.00 2.71
295 301 2.358737 CGTGTGGAGTGGCCCTTC 60.359 66.667 0.00 0.00 34.97 3.46
313 319 0.107703 TCATCAATCACCTCCACGCC 60.108 55.000 0.00 0.00 0.00 5.68
315 321 1.293924 GCTCATCAATCACCTCCACG 58.706 55.000 0.00 0.00 0.00 4.94
323 329 7.039853 TCAGTGTTTTAATTGGCTCATCAATCA 60.040 33.333 0.00 0.00 36.45 2.57
326 332 6.265196 ACTCAGTGTTTTAATTGGCTCATCAA 59.735 34.615 0.00 0.00 0.00 2.57
362 368 2.559668 CACAAGCATGTTTGGATCCAGT 59.440 45.455 23.82 2.96 37.82 4.00
370 376 2.032117 TGAGCGTACACAAGCATGTTTG 60.032 45.455 19.42 19.42 37.82 2.93
401 694 5.527951 TCGTACCTACTTTTGCAATCACAAA 59.472 36.000 0.00 0.00 37.74 2.83
423 716 2.126307 CACCGCACCACTCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
428 721 3.659089 ATACGCCACCGCACCACTC 62.659 63.158 0.00 0.00 38.22 3.51
432 725 0.812412 ACATAATACGCCACCGCACC 60.812 55.000 0.00 0.00 38.22 5.01
436 729 3.088194 ACTGTACATAATACGCCACCG 57.912 47.619 0.00 0.00 41.14 4.94
485 778 2.040679 AGTATGTACCCCGCCAAAAAGT 59.959 45.455 0.00 0.00 0.00 2.66
486 779 2.422127 CAGTATGTACCCCGCCAAAAAG 59.578 50.000 0.00 0.00 0.00 2.27
501 794 5.798015 ACTACAGTCTCGTGTACAGTATG 57.202 43.478 0.00 0.00 35.14 2.39
524 821 7.811236 CGCCTTTACAAATCCTCTAATCGTATA 59.189 37.037 0.00 0.00 0.00 1.47
532 829 3.516300 TGGTCGCCTTTACAAATCCTCTA 59.484 43.478 0.00 0.00 0.00 2.43
546 843 5.067283 GGATAATTGTTAATGTTGGTCGCCT 59.933 40.000 0.00 0.00 0.00 5.52
551 848 8.477256 CCAAGATGGATAATTGTTAATGTTGGT 58.523 33.333 13.79 0.00 40.96 3.67
587 1214 1.334160 CGGTTTAAGCCCCAGGTTTT 58.666 50.000 2.36 0.00 34.89 2.43
725 1352 1.442526 GCGATGATTGGGCTCCACTG 61.443 60.000 0.00 0.00 30.78 3.66
806 1433 2.363018 TGAGGGGTCTGCGGAGAG 60.363 66.667 6.98 0.00 0.00 3.20
853 1480 1.024579 ATAGTTTTGCCTGACGCGGG 61.025 55.000 12.47 2.62 42.08 6.13
941 1572 1.145377 GTGGACGGTGTTCTGTGGT 59.855 57.895 0.00 0.00 32.75 4.16
996 1631 3.333189 CCGCTCATGTCCATCGCG 61.333 66.667 0.00 0.00 43.08 5.87
1534 2208 2.108514 CGAACATGTCGCTGCCCAT 61.109 57.895 0.00 0.00 44.14 4.00
1735 2410 3.683847 GCTGGAATCAACTGCCATAGAGT 60.684 47.826 0.00 0.00 0.00 3.24
1736 2411 2.877168 GCTGGAATCAACTGCCATAGAG 59.123 50.000 0.00 0.00 0.00 2.43
1742 2417 5.772825 TTATTATGCTGGAATCAACTGCC 57.227 39.130 0.00 0.00 32.59 4.85
1815 2490 5.822519 TCTGATTGCATGTATACCAAAGGAC 59.177 40.000 0.00 0.00 0.00 3.85
1885 2566 5.713389 TCATCCAGCAAATCATGTCTTCTTT 59.287 36.000 0.00 0.00 0.00 2.52
1886 2567 5.258841 TCATCCAGCAAATCATGTCTTCTT 58.741 37.500 0.00 0.00 0.00 2.52
1887 2568 4.851843 TCATCCAGCAAATCATGTCTTCT 58.148 39.130 0.00 0.00 0.00 2.85
1888 2569 5.571784 TTCATCCAGCAAATCATGTCTTC 57.428 39.130 0.00 0.00 0.00 2.87
1932 2613 0.672401 TTTGGAATCCTGTCGCCGTC 60.672 55.000 0.00 0.00 0.00 4.79
1956 2637 7.423844 TCACACATGAATTGATAGGAGTACT 57.576 36.000 0.00 0.00 0.00 2.73
2241 2922 1.202582 ACTACGTGACACATCAGCTCC 59.797 52.381 6.37 0.00 34.75 4.70
2301 2986 5.007626 TGCACAGTCACACTAAATCTGAAAC 59.992 40.000 0.00 0.00 0.00 2.78
2465 3153 1.995542 TGCCAAAGGAGGGAGAAGAAT 59.004 47.619 0.00 0.00 0.00 2.40
2513 3202 4.158025 AGGGAGTATGTACTGAGACGTTTG 59.842 45.833 0.00 0.00 36.50 2.93
2516 3205 3.543665 GAGGGAGTATGTACTGAGACGT 58.456 50.000 0.00 0.00 36.50 4.34
2526 3215 4.946160 TTTTGGAATGGAGGGAGTATGT 57.054 40.909 0.00 0.00 0.00 2.29
2527 3216 8.386264 ACTATATTTTGGAATGGAGGGAGTATG 58.614 37.037 0.00 0.00 0.00 2.39
2528 3217 8.386264 CACTATATTTTGGAATGGAGGGAGTAT 58.614 37.037 0.00 0.00 0.00 2.12
2529 3218 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
2530 3219 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
2531 3220 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2532 3221 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
2533 3222 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
2534 3223 4.821805 ACGCACTATATTTTGGAATGGAGG 59.178 41.667 0.00 0.00 0.00 4.30
2535 3224 5.049405 GGACGCACTATATTTTGGAATGGAG 60.049 44.000 0.00 0.00 0.00 3.86
2536 3225 4.819630 GGACGCACTATATTTTGGAATGGA 59.180 41.667 0.00 0.00 0.00 3.41
2537 3226 4.319477 CGGACGCACTATATTTTGGAATGG 60.319 45.833 0.00 0.00 0.00 3.16
2538 3227 4.772434 CGGACGCACTATATTTTGGAATG 58.228 43.478 0.00 0.00 0.00 2.67
2539 3228 3.250040 GCGGACGCACTATATTTTGGAAT 59.750 43.478 12.31 0.00 41.49 3.01
2540 3229 2.610374 GCGGACGCACTATATTTTGGAA 59.390 45.455 12.31 0.00 41.49 3.53
2541 3230 2.206750 GCGGACGCACTATATTTTGGA 58.793 47.619 12.31 0.00 41.49 3.53
2542 3231 2.663279 GCGGACGCACTATATTTTGG 57.337 50.000 12.31 0.00 41.49 3.28
2554 3243 3.479269 CTCGGAAAGTGCGGACGC 61.479 66.667 10.13 10.13 42.35 5.19
2555 3244 2.809601 CCTCGGAAAGTGCGGACG 60.810 66.667 0.00 0.00 0.00 4.79
2556 3245 1.737008 GACCTCGGAAAGTGCGGAC 60.737 63.158 0.00 0.00 0.00 4.79
2557 3246 2.654877 GACCTCGGAAAGTGCGGA 59.345 61.111 0.00 0.00 0.00 5.54
2558 3247 2.434359 GGACCTCGGAAAGTGCGG 60.434 66.667 0.00 0.00 0.00 5.69
2559 3248 1.301401 TTGGACCTCGGAAAGTGCG 60.301 57.895 0.00 0.00 0.00 5.34
2560 3249 0.250338 AGTTGGACCTCGGAAAGTGC 60.250 55.000 0.00 0.00 0.00 4.40
2561 3250 2.256117 AAGTTGGACCTCGGAAAGTG 57.744 50.000 0.00 0.00 0.00 3.16
2562 3251 2.171870 TCAAAGTTGGACCTCGGAAAGT 59.828 45.455 0.00 0.00 0.00 2.66
2563 3252 2.846193 TCAAAGTTGGACCTCGGAAAG 58.154 47.619 0.00 0.00 0.00 2.62
2564 3253 3.181449 TGATCAAAGTTGGACCTCGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
2565 3254 2.370519 TGATCAAAGTTGGACCTCGGAA 59.629 45.455 0.00 0.00 0.00 4.30
2566 3255 1.974957 TGATCAAAGTTGGACCTCGGA 59.025 47.619 0.00 0.00 0.00 4.55
2567 3256 2.472695 TGATCAAAGTTGGACCTCGG 57.527 50.000 0.00 0.00 0.00 4.63
2568 3257 6.683974 ATTTATGATCAAAGTTGGACCTCG 57.316 37.500 0.00 0.00 0.00 4.63
2571 3260 9.366216 GGTTAAATTTATGATCAAAGTTGGACC 57.634 33.333 0.00 5.86 31.86 4.46
2572 3261 9.921637 TGGTTAAATTTATGATCAAAGTTGGAC 57.078 29.630 0.00 0.67 29.44 4.02
2580 3269 9.413048 GGTTTCGTTGGTTAAATTTATGATCAA 57.587 29.630 0.00 0.00 0.00 2.57
2581 3270 7.751348 CGGTTTCGTTGGTTAAATTTATGATCA 59.249 33.333 0.00 0.00 0.00 2.92
2582 3271 7.964011 TCGGTTTCGTTGGTTAAATTTATGATC 59.036 33.333 0.00 0.00 37.69 2.92
2583 3272 7.751793 GTCGGTTTCGTTGGTTAAATTTATGAT 59.248 33.333 0.00 0.00 37.69 2.45
2584 3273 7.041235 AGTCGGTTTCGTTGGTTAAATTTATGA 60.041 33.333 0.00 0.00 37.69 2.15
2585 3274 7.060174 CAGTCGGTTTCGTTGGTTAAATTTATG 59.940 37.037 0.00 0.00 37.69 1.90
2586 3275 7.079475 CAGTCGGTTTCGTTGGTTAAATTTAT 58.921 34.615 0.00 0.00 37.69 1.40
2587 3276 6.038050 ACAGTCGGTTTCGTTGGTTAAATTTA 59.962 34.615 0.00 0.00 37.69 1.40
2588 3277 5.163632 ACAGTCGGTTTCGTTGGTTAAATTT 60.164 36.000 0.00 0.00 37.69 1.82
2589 3278 4.336153 ACAGTCGGTTTCGTTGGTTAAATT 59.664 37.500 0.00 0.00 37.69 1.82
2590 3279 3.878699 ACAGTCGGTTTCGTTGGTTAAAT 59.121 39.130 0.00 0.00 37.69 1.40
2591 3280 3.063725 CACAGTCGGTTTCGTTGGTTAAA 59.936 43.478 0.00 0.00 37.69 1.52
2592 3281 2.608546 CACAGTCGGTTTCGTTGGTTAA 59.391 45.455 0.00 0.00 37.69 2.01
2593 3282 2.203401 CACAGTCGGTTTCGTTGGTTA 58.797 47.619 0.00 0.00 37.69 2.85
2594 3283 1.011333 CACAGTCGGTTTCGTTGGTT 58.989 50.000 0.00 0.00 37.69 3.67
2595 3284 0.812412 CCACAGTCGGTTTCGTTGGT 60.812 55.000 0.00 0.00 37.69 3.67
2596 3285 1.938861 CCACAGTCGGTTTCGTTGG 59.061 57.895 0.00 0.00 37.69 3.77
2597 3286 1.278637 GCCACAGTCGGTTTCGTTG 59.721 57.895 0.00 0.00 37.69 4.10
2598 3287 2.241880 CGCCACAGTCGGTTTCGTT 61.242 57.895 0.00 0.00 37.69 3.85
2599 3288 2.660552 CGCCACAGTCGGTTTCGT 60.661 61.111 0.00 0.00 37.69 3.85
2600 3289 3.411351 CCGCCACAGTCGGTTTCG 61.411 66.667 0.00 0.00 41.85 3.46
2601 3290 3.047877 CCCGCCACAGTCGGTTTC 61.048 66.667 0.35 0.00 45.09 2.78
2602 3291 3.530910 CTCCCGCCACAGTCGGTTT 62.531 63.158 0.35 0.00 45.09 3.27
2603 3292 4.003788 CTCCCGCCACAGTCGGTT 62.004 66.667 0.35 0.00 45.09 4.44
2604 3293 4.988716 TCTCCCGCCACAGTCGGT 62.989 66.667 0.35 0.00 45.09 4.69
2605 3294 2.725203 TTTTCTCCCGCCACAGTCGG 62.725 60.000 0.00 0.00 46.05 4.79
2606 3295 0.882927 TTTTTCTCCCGCCACAGTCG 60.883 55.000 0.00 0.00 0.00 4.18
2607 3296 0.875059 CTTTTTCTCCCGCCACAGTC 59.125 55.000 0.00 0.00 0.00 3.51
2608 3297 0.182775 ACTTTTTCTCCCGCCACAGT 59.817 50.000 0.00 0.00 0.00 3.55
2609 3298 1.318576 AACTTTTTCTCCCGCCACAG 58.681 50.000 0.00 0.00 0.00 3.66
2610 3299 2.642154 TAACTTTTTCTCCCGCCACA 57.358 45.000 0.00 0.00 0.00 4.17
2611 3300 4.004982 TGTATAACTTTTTCTCCCGCCAC 58.995 43.478 0.00 0.00 0.00 5.01
2612 3301 4.289238 TGTATAACTTTTTCTCCCGCCA 57.711 40.909 0.00 0.00 0.00 5.69
2613 3302 5.830000 ATTGTATAACTTTTTCTCCCGCC 57.170 39.130 0.00 0.00 0.00 6.13
2614 3303 6.848451 TCAATTGTATAACTTTTTCTCCCGC 58.152 36.000 5.13 0.00 0.00 6.13
2615 3304 9.685828 TTTTCAATTGTATAACTTTTTCTCCCG 57.314 29.630 5.13 0.00 0.00 5.14
2654 3343 9.807649 GAGCAAAAGTTATACCAATGAATTCAT 57.192 29.630 15.36 15.36 38.41 2.57
2655 3344 8.250332 GGAGCAAAAGTTATACCAATGAATTCA 58.750 33.333 11.26 11.26 0.00 2.57
2656 3345 7.706607 GGGAGCAAAAGTTATACCAATGAATTC 59.293 37.037 0.00 0.00 0.00 2.17
2657 3346 7.555965 GGGAGCAAAAGTTATACCAATGAATT 58.444 34.615 0.00 0.00 0.00 2.17
2658 3347 6.183360 CGGGAGCAAAAGTTATACCAATGAAT 60.183 38.462 0.00 0.00 0.00 2.57
2659 3348 5.124776 CGGGAGCAAAAGTTATACCAATGAA 59.875 40.000 0.00 0.00 0.00 2.57
2660 3349 4.638421 CGGGAGCAAAAGTTATACCAATGA 59.362 41.667 0.00 0.00 0.00 2.57
2661 3350 4.920376 CGGGAGCAAAAGTTATACCAATG 58.080 43.478 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.