Multiple sequence alignment - TraesCS5D01G318400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G318400
chr5D
100.000
2720
0
0
1
2720
411195748
411198467
0.000000e+00
5024.0
1
TraesCS5D01G318400
chr5D
80.216
925
136
29
804
1718
411627439
411628326
0.000000e+00
651.0
2
TraesCS5D01G318400
chr5D
85.429
350
48
3
1066
1414
410444225
410444572
7.160000e-96
361.0
3
TraesCS5D01G318400
chr5D
84.241
349
53
2
1067
1414
411785487
411785140
3.350000e-89
339.0
4
TraesCS5D01G318400
chr5D
79.577
142
29
0
1544
1685
411699521
411699380
4.790000e-18
102.0
5
TraesCS5D01G318400
chr5D
89.062
64
5
2
268
329
446741151
446741214
8.070000e-11
78.7
6
TraesCS5D01G318400
chr5B
92.660
2643
126
22
46
2644
493673112
493675730
0.000000e+00
3744.0
7
TraesCS5D01G318400
chr5B
79.807
931
139
24
798
1718
493931210
493932101
1.370000e-177
632.0
8
TraesCS5D01G318400
chr5B
84.857
350
51
2
1066
1414
492619520
492619868
4.310000e-93
351.0
9
TraesCS5D01G318400
chr5B
97.959
49
0
1
2672
2720
493675732
493675779
1.740000e-12
84.2
10
TraesCS5D01G318400
chr5A
90.692
2471
165
30
74
2493
523135780
523138236
0.000000e+00
3229.0
11
TraesCS5D01G318400
chr5A
81.102
926
126
33
804
1718
523449896
523450783
0.000000e+00
695.0
12
TraesCS5D01G318400
chr5A
84.551
356
47
7
1066
1414
522066673
522067027
2.000000e-91
346.0
13
TraesCS5D01G318400
chr5A
85.556
90
10
1
1568
1654
522067295
522067384
1.040000e-14
91.6
14
TraesCS5D01G318400
chr5A
81.319
91
16
1
1568
1657
522074389
522074479
3.760000e-09
73.1
15
TraesCS5D01G318400
chr7D
100.000
51
0
0
1
51
173494147
173494197
8.020000e-16
95.3
16
TraesCS5D01G318400
chr7D
100.000
51
0
0
1
51
187885925
187885975
8.020000e-16
95.3
17
TraesCS5D01G318400
chr7D
98.113
53
1
0
1
53
365152468
365152416
2.880000e-15
93.5
18
TraesCS5D01G318400
chr3D
100.000
51
0
0
1
51
201210865
201210815
8.020000e-16
95.3
19
TraesCS5D01G318400
chr3D
100.000
51
0
0
1
51
570357889
570357839
8.020000e-16
95.3
20
TraesCS5D01G318400
chr3D
97.959
49
1
0
1
49
500419362
500419410
4.830000e-13
86.1
21
TraesCS5D01G318400
chr2D
100.000
51
0
0
1
51
180222249
180222199
8.020000e-16
95.3
22
TraesCS5D01G318400
chr2D
100.000
51
0
0
1
51
634082798
634082748
8.020000e-16
95.3
23
TraesCS5D01G318400
chr2D
93.443
61
3
1
270
329
2724957
2725017
3.730000e-14
89.8
24
TraesCS5D01G318400
chrUn
100.000
50
0
0
1
50
11502329
11502280
2.880000e-15
93.5
25
TraesCS5D01G318400
chr7A
87.500
64
6
1
268
329
40531657
40531594
3.760000e-09
73.1
26
TraesCS5D01G318400
chr6B
97.222
36
1
0
268
303
624775717
624775752
8.130000e-06
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G318400
chr5D
411195748
411198467
2719
False
5024.0
5024
100.0000
1
2720
1
chr5D.!!$F2
2719
1
TraesCS5D01G318400
chr5D
411627439
411628326
887
False
651.0
651
80.2160
804
1718
1
chr5D.!!$F3
914
2
TraesCS5D01G318400
chr5B
493673112
493675779
2667
False
1914.1
3744
95.3095
46
2720
2
chr5B.!!$F3
2674
3
TraesCS5D01G318400
chr5B
493931210
493932101
891
False
632.0
632
79.8070
798
1718
1
chr5B.!!$F2
920
4
TraesCS5D01G318400
chr5A
523135780
523138236
2456
False
3229.0
3229
90.6920
74
2493
1
chr5A.!!$F2
2419
5
TraesCS5D01G318400
chr5A
523449896
523450783
887
False
695.0
695
81.1020
804
1718
1
chr5A.!!$F3
914
6
TraesCS5D01G318400
chr5A
522066673
522067384
711
False
218.8
346
85.0535
1066
1654
2
chr5A.!!$F4
588
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
38
39
0.472471
TGGCCGAAACTTGACTTCCT
59.528
50.0
0.0
0.0
0.0
3.36
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1761
1939
0.3199
GCTGACGTGGAAGAGCTTCA
60.32
55.0
11.9
0.0
41.2
3.02
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
2.433004
ACCCCCGAAACTTTCCCG
59.567
61.111
0.00
0.00
0.00
5.14
18
19
2.360726
CCCCCGAAACTTTCCCGG
60.361
66.667
0.00
0.00
42.64
5.73
19
20
2.433004
CCCCGAAACTTTCCCGGT
59.567
61.111
0.00
0.00
41.53
5.28
20
21
1.969589
CCCCGAAACTTTCCCGGTG
60.970
63.158
0.00
0.00
41.53
4.94
21
22
1.969589
CCCGAAACTTTCCCGGTGG
60.970
63.158
0.00
0.00
41.53
4.61
22
23
2.622962
CCGAAACTTTCCCGGTGGC
61.623
63.158
0.00
0.00
38.55
5.01
23
24
2.622962
CGAAACTTTCCCGGTGGCC
61.623
63.158
0.00
0.00
0.00
5.36
34
35
4.475527
GGTGGCCGAAACTTGACT
57.524
55.556
0.00
0.00
0.00
3.41
35
36
2.715536
GGTGGCCGAAACTTGACTT
58.284
52.632
0.00
0.00
0.00
3.01
36
37
0.591659
GGTGGCCGAAACTTGACTTC
59.408
55.000
0.00
0.00
0.00
3.01
37
38
0.591659
GTGGCCGAAACTTGACTTCC
59.408
55.000
0.00
0.00
0.00
3.46
38
39
0.472471
TGGCCGAAACTTGACTTCCT
59.528
50.000
0.00
0.00
0.00
3.36
39
40
1.695242
TGGCCGAAACTTGACTTCCTA
59.305
47.619
0.00
0.00
0.00
2.94
40
41
2.304761
TGGCCGAAACTTGACTTCCTAT
59.695
45.455
0.00
0.00
0.00
2.57
41
42
3.516300
TGGCCGAAACTTGACTTCCTATA
59.484
43.478
0.00
0.00
0.00
1.31
42
43
4.163458
TGGCCGAAACTTGACTTCCTATAT
59.837
41.667
0.00
0.00
0.00
0.86
43
44
5.364446
TGGCCGAAACTTGACTTCCTATATA
59.636
40.000
0.00
0.00
0.00
0.86
44
45
6.042781
TGGCCGAAACTTGACTTCCTATATAT
59.957
38.462
0.00
0.00
0.00
0.86
66
67
3.992943
ATTCCATGGACAACGTAGGAA
57.007
42.857
15.91
0.00
39.24
3.36
80
86
6.427547
ACAACGTAGGAATTTCCGAATAAACA
59.572
34.615
9.77
0.00
42.75
2.83
106
112
5.439721
TCCATTTTGTATGTCAGGGATCTG
58.560
41.667
0.00
0.00
42.21
2.90
131
137
3.009253
TGTTTCCTTTTAGGTATCCGCCA
59.991
43.478
0.00
0.00
36.53
5.69
167
173
8.230472
AGTCAGATGAAACACTCTTTGATTTT
57.770
30.769
0.00
0.00
0.00
1.82
169
175
8.348507
GTCAGATGAAACACTCTTTGATTTTCT
58.651
33.333
0.00
0.00
0.00
2.52
255
262
6.490381
ACATCATTCATTTGCATAGAGCTCAT
59.510
34.615
17.77
4.64
45.94
2.90
329
336
0.687354
ACGAGCACCAGGACTTGAAT
59.313
50.000
0.00
0.00
0.00
2.57
330
337
1.072331
ACGAGCACCAGGACTTGAATT
59.928
47.619
0.00
0.00
0.00
2.17
339
346
4.105697
ACCAGGACTTGAATTTTAGTGGGA
59.894
41.667
0.00
0.00
0.00
4.37
353
360
6.645884
TTTAGTGGGATGGGTATAACACTT
57.354
37.500
0.00
0.00
39.59
3.16
364
371
4.628766
GGGTATAACACTTTTCTCGACCAC
59.371
45.833
0.00
0.00
0.00
4.16
416
424
3.864003
GCGGTACTTGTCTTGGATAGAAC
59.136
47.826
0.00
0.00
33.81
3.01
438
446
4.634443
ACTACATAACACGAGGAAAATGCC
59.366
41.667
0.00
0.00
0.00
4.40
488
496
1.681264
GGGCCCCATTTATCAGTTTCG
59.319
52.381
12.23
0.00
0.00
3.46
697
706
2.542595
GGAGAACAACATATAACGCGGG
59.457
50.000
12.47
0.00
0.00
6.13
773
782
1.677217
GCCCCAACTGTCAGTCTCATC
60.677
57.143
5.82
0.00
0.00
2.92
982
994
1.216710
GTAAGCTCGAGCCAGCACT
59.783
57.895
32.94
11.52
42.40
4.40
988
1000
2.236223
CTCGAGCCAGCACTGACCAT
62.236
60.000
0.00
0.00
0.00
3.55
1027
1039
4.598894
CCGGCTCCGATCAGCAGG
62.599
72.222
10.28
9.30
46.48
4.85
1047
1059
3.296737
AGCTCCCCTTCCTCCCCT
61.297
66.667
0.00
0.00
0.00
4.79
1218
1233
4.996434
GGCACGCACCTCACTGCT
62.996
66.667
0.00
0.00
34.77
4.24
1345
1366
0.319900
GCTCTCCGACTTTGCAGACA
60.320
55.000
0.00
0.00
0.00
3.41
1635
1812
4.082523
TTCGCGGAGGGGCTTCTG
62.083
66.667
6.13
0.00
42.39
3.02
1761
1939
6.569226
GCTTTGACTCTATGCATGAACAAACT
60.569
38.462
10.16
0.00
0.00
2.66
1768
1946
3.631145
TGCATGAACAAACTGAAGCTC
57.369
42.857
0.00
0.00
0.00
4.09
1773
1951
3.884895
TGAACAAACTGAAGCTCTTCCA
58.115
40.909
7.12
0.00
38.77
3.53
1774
1952
3.627577
TGAACAAACTGAAGCTCTTCCAC
59.372
43.478
7.12
0.00
38.77
4.02
1818
1996
5.405935
AACTTAAACCCATCAAATCCTGC
57.594
39.130
0.00
0.00
0.00
4.85
1825
2003
3.181440
ACCCATCAAATCCTGCGACATAT
60.181
43.478
0.00
0.00
0.00
1.78
1826
2004
4.041567
ACCCATCAAATCCTGCGACATATA
59.958
41.667
0.00
0.00
0.00
0.86
1827
2005
4.393062
CCCATCAAATCCTGCGACATATAC
59.607
45.833
0.00
0.00
0.00
1.47
1828
2006
4.996758
CCATCAAATCCTGCGACATATACA
59.003
41.667
0.00
0.00
0.00
2.29
1841
2019
5.555552
CGACATATACATGCAAACAAACGA
58.444
37.500
0.00
0.00
35.39
3.85
1858
2036
1.135460
ACGAAGTTCTAGGCTACGCAC
60.135
52.381
0.56
0.00
37.78
5.34
1860
2038
2.531206
GAAGTTCTAGGCTACGCACAG
58.469
52.381
0.00
0.00
0.00
3.66
1863
2041
1.103803
TTCTAGGCTACGCACAGGAG
58.896
55.000
0.00
0.00
0.00
3.69
1872
2062
1.609208
ACGCACAGGAGCAAGAAAAT
58.391
45.000
0.00
0.00
0.00
1.82
1879
2069
4.216902
CACAGGAGCAAGAAAATGACATCA
59.783
41.667
0.00
0.00
0.00
3.07
1885
2075
4.082895
AGCAAGAAAATGACATCACTGCTC
60.083
41.667
0.00
0.00
34.05
4.26
1895
2085
5.604565
TGACATCACTGCTCGATGAATAAT
58.395
37.500
14.75
0.00
42.39
1.28
1897
2087
6.642540
TGACATCACTGCTCGATGAATAATAC
59.357
38.462
14.75
0.00
42.39
1.89
1899
2089
6.865726
ACATCACTGCTCGATGAATAATACTC
59.134
38.462
14.75
0.00
42.39
2.59
1923
2113
2.102252
CAGAAGATCCTAGACTGGTGGC
59.898
54.545
0.00
0.00
0.00
5.01
1926
2116
2.114616
AGATCCTAGACTGGTGGCAAG
58.885
52.381
0.00
0.00
0.00
4.01
1930
2120
0.107945
CTAGACTGGTGGCAAGAGGC
60.108
60.000
0.00
0.00
43.74
4.70
1959
2150
6.759497
AAAAAGGGTACTATCACTTGATGC
57.241
37.500
1.77
0.00
36.05
3.91
1963
2154
3.181479
GGGTACTATCACTTGATGCGTCA
60.181
47.826
3.97
3.97
36.05
4.35
1985
2176
8.300286
CGTCATGACTATAACTGGTAATCAGAT
58.700
37.037
22.95
0.00
46.18
2.90
1999
2190
7.751732
TGGTAATCAGATGAGAAAAATCAACG
58.248
34.615
0.00
0.00
31.76
4.10
2000
2191
7.148255
TGGTAATCAGATGAGAAAAATCAACGG
60.148
37.037
0.00
0.00
31.76
4.44
2014
2205
7.924103
AAAATCAACGGTTTGTTAATCAGAC
57.076
32.000
0.00
0.00
39.29
3.51
2035
2230
2.510691
CGTGGTCCATGTACGCCC
60.511
66.667
2.56
0.00
0.00
6.13
2083
2278
0.321919
CAGGTCAGCTGGCTAAAGCA
60.322
55.000
19.48
0.00
46.08
3.91
2110
2305
4.797912
ATCCCTGGGATCTTTTTCTACC
57.202
45.455
22.79
0.00
38.09
3.18
2238
2433
5.183522
TGTGTCACGTACCTTTTTCCTTTTT
59.816
36.000
0.00
0.00
0.00
1.94
2291
2486
1.063806
GAAGTGACTAGTGTGCTGCG
58.936
55.000
0.00
0.00
0.00
5.18
2399
2618
4.992319
TCGTTACGAGGTTGATGTCAAAAT
59.008
37.500
2.33
0.00
37.63
1.82
2432
2651
9.625747
AAAACAAAACATATTTCATGGGTTTCT
57.374
25.926
0.00
0.00
31.80
2.52
2453
2672
1.417517
TGATGCCTGTGTGAAGACTGT
59.582
47.619
0.00
0.00
0.00
3.55
2526
2749
2.290641
TGTGTGGATATTGGTGGTGGTC
60.291
50.000
0.00
0.00
0.00
4.02
2648
2872
8.512966
TCAACGACAAATTAATATGGATTGGA
57.487
30.769
0.00
0.00
0.00
3.53
2649
2873
8.620416
TCAACGACAAATTAATATGGATTGGAG
58.380
33.333
0.00
0.00
0.00
3.86
2650
2874
7.510549
ACGACAAATTAATATGGATTGGAGG
57.489
36.000
0.00
0.00
0.00
4.30
2651
2875
6.016276
ACGACAAATTAATATGGATTGGAGGC
60.016
38.462
0.00
0.00
0.00
4.70
2652
2876
6.016360
CGACAAATTAATATGGATTGGAGGCA
60.016
38.462
0.00
0.00
0.00
4.75
2653
2877
7.294017
ACAAATTAATATGGATTGGAGGCAG
57.706
36.000
0.00
0.00
0.00
4.85
2654
2878
6.840705
ACAAATTAATATGGATTGGAGGCAGT
59.159
34.615
0.00
0.00
0.00
4.40
2655
2879
8.004215
ACAAATTAATATGGATTGGAGGCAGTA
58.996
33.333
0.00
0.00
0.00
2.74
2656
2880
8.517878
CAAATTAATATGGATTGGAGGCAGTAG
58.482
37.037
0.00
0.00
0.00
2.57
2657
2881
6.763715
TTAATATGGATTGGAGGCAGTAGT
57.236
37.500
0.00
0.00
0.00
2.73
2658
2882
5.653255
AATATGGATTGGAGGCAGTAGTT
57.347
39.130
0.00
0.00
0.00
2.24
2659
2883
5.653255
ATATGGATTGGAGGCAGTAGTTT
57.347
39.130
0.00
0.00
0.00
2.66
2660
2884
3.806949
TGGATTGGAGGCAGTAGTTTT
57.193
42.857
0.00
0.00
0.00
2.43
2661
2885
4.112634
TGGATTGGAGGCAGTAGTTTTT
57.887
40.909
0.00
0.00
0.00
1.94
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
2.433004
CGGGAAAGTTTCGGGGGT
59.567
61.111
9.46
0.00
0.00
4.95
1
2
2.360726
CCGGGAAAGTTTCGGGGG
60.361
66.667
9.46
6.66
40.07
5.40
5
6
2.622962
GGCCACCGGGAAAGTTTCG
61.623
63.158
6.32
0.00
35.59
3.46
6
7
2.622962
CGGCCACCGGGAAAGTTTC
61.623
63.158
6.32
7.09
44.15
2.78
7
8
2.596338
CGGCCACCGGGAAAGTTT
60.596
61.111
6.32
0.00
44.15
2.66
17
18
0.591659
GAAGTCAAGTTTCGGCCACC
59.408
55.000
2.24
0.00
0.00
4.61
18
19
0.591659
GGAAGTCAAGTTTCGGCCAC
59.408
55.000
2.24
0.00
0.00
5.01
19
20
0.472471
AGGAAGTCAAGTTTCGGCCA
59.528
50.000
2.24
0.00
0.00
5.36
20
21
2.467566
TAGGAAGTCAAGTTTCGGCC
57.532
50.000
0.00
0.00
0.00
6.13
21
22
9.654663
ATTATATATAGGAAGTCAAGTTTCGGC
57.345
33.333
0.00
0.00
0.00
5.54
34
35
9.884636
CGTTGTCCATGGAATTATATATAGGAA
57.115
33.333
18.20
0.00
0.00
3.36
35
36
9.042450
ACGTTGTCCATGGAATTATATATAGGA
57.958
33.333
18.20
0.00
0.00
2.94
39
40
9.042450
TCCTACGTTGTCCATGGAATTATATAT
57.958
33.333
18.20
0.11
0.00
0.86
40
41
8.425237
TCCTACGTTGTCCATGGAATTATATA
57.575
34.615
18.20
4.47
0.00
0.86
41
42
7.311092
TCCTACGTTGTCCATGGAATTATAT
57.689
36.000
18.20
3.42
0.00
0.86
42
43
6.734502
TCCTACGTTGTCCATGGAATTATA
57.265
37.500
18.20
5.00
0.00
0.98
43
44
5.623956
TCCTACGTTGTCCATGGAATTAT
57.376
39.130
18.20
3.98
0.00
1.28
44
45
5.423704
TTCCTACGTTGTCCATGGAATTA
57.576
39.130
18.20
2.96
0.00
1.40
48
49
3.992943
AATTCCTACGTTGTCCATGGA
57.007
42.857
11.44
11.44
0.00
3.41
59
60
5.583457
AGGTGTTTATTCGGAAATTCCTACG
59.417
40.000
10.64
0.00
33.30
3.51
66
67
6.850752
AAATGGAGGTGTTTATTCGGAAAT
57.149
33.333
0.00
0.00
0.00
2.17
80
86
3.591527
TCCCTGACATACAAAATGGAGGT
59.408
43.478
0.00
0.00
0.00
3.85
106
112
5.220989
GGCGGATACCTAAAAGGAAACATTC
60.221
44.000
0.00
0.00
37.67
2.67
131
137
8.209584
AGTGTTTCATCTGACTATCATTAGCAT
58.790
33.333
0.00
0.00
0.00
3.79
167
173
5.355071
TCGCGTGACTAGTTAAGGAATAAGA
59.645
40.000
5.77
0.00
0.00
2.10
169
175
5.565592
TCGCGTGACTAGTTAAGGAATAA
57.434
39.130
5.77
0.00
0.00
1.40
176
182
6.366604
TCATTTTCATTCGCGTGACTAGTTAA
59.633
34.615
5.77
0.00
0.00
2.01
182
188
4.024048
ACTTTCATTTTCATTCGCGTGACT
60.024
37.500
5.77
0.00
0.00
3.41
255
262
0.671796
TGCGTTCACTTCCGAGAGAA
59.328
50.000
0.00
0.00
31.32
2.87
310
317
0.687354
ATTCAAGTCCTGGTGCTCGT
59.313
50.000
0.00
0.00
0.00
4.18
329
336
6.645884
AGTGTTATACCCATCCCACTAAAA
57.354
37.500
0.00
0.00
31.80
1.52
330
337
6.645884
AAGTGTTATACCCATCCCACTAAA
57.354
37.500
0.00
0.00
33.14
1.85
339
346
5.046159
TGGTCGAGAAAAGTGTTATACCCAT
60.046
40.000
0.00
0.00
0.00
4.00
395
402
5.326200
AGTTCTATCCAAGACAAGTACCG
57.674
43.478
0.00
0.00
32.51
4.02
408
415
6.630444
TCCTCGTGTTATGTAGTTCTATCC
57.370
41.667
0.00
0.00
0.00
2.59
416
424
4.876107
AGGCATTTTCCTCGTGTTATGTAG
59.124
41.667
0.00
0.00
0.00
2.74
488
496
1.394917
CAGCGTGATAAGGTGTTGCTC
59.605
52.381
0.00
0.00
32.96
4.26
697
706
2.721090
GCACAAGTGACGCATTTTTCTC
59.279
45.455
4.04
0.00
0.00
2.87
1044
1056
3.068691
TGCGAGGAGGACGAAGGG
61.069
66.667
0.00
0.00
0.00
3.95
1047
1059
2.282958
AGGTGCGAGGAGGACGAA
60.283
61.111
0.00
0.00
42.62
3.85
1761
1939
0.319900
GCTGACGTGGAAGAGCTTCA
60.320
55.000
11.90
0.00
41.20
3.02
1768
1946
7.218773
CACAATTTTATTATGCTGACGTGGAAG
59.781
37.037
0.00
0.00
0.00
3.46
1773
1951
6.751514
TCCACAATTTTATTATGCTGACGT
57.248
33.333
0.00
0.00
0.00
4.34
1774
1952
7.250569
AGTTCCACAATTTTATTATGCTGACG
58.749
34.615
0.00
0.00
0.00
4.35
1818
1996
5.555552
TCGTTTGTTTGCATGTATATGTCG
58.444
37.500
1.14
0.00
36.65
4.35
1825
2003
5.493133
AGAACTTCGTTTGTTTGCATGTA
57.507
34.783
0.00
0.00
0.00
2.29
1826
2004
4.370364
AGAACTTCGTTTGTTTGCATGT
57.630
36.364
0.00
0.00
0.00
3.21
1827
2005
4.911610
CCTAGAACTTCGTTTGTTTGCATG
59.088
41.667
0.00
0.00
0.00
4.06
1828
2006
4.556699
GCCTAGAACTTCGTTTGTTTGCAT
60.557
41.667
0.00
0.00
0.00
3.96
1853
2031
1.267806
CATTTTCTTGCTCCTGTGCGT
59.732
47.619
0.00
0.00
35.36
5.24
1858
2036
4.458295
AGTGATGTCATTTTCTTGCTCCTG
59.542
41.667
0.00
0.00
0.00
3.86
1860
2038
4.730657
CAGTGATGTCATTTTCTTGCTCC
58.269
43.478
0.00
0.00
0.00
4.70
1863
2041
4.164294
GAGCAGTGATGTCATTTTCTTGC
58.836
43.478
0.00
0.00
0.00
4.01
1867
2045
4.330894
TCATCGAGCAGTGATGTCATTTTC
59.669
41.667
11.16
0.00
42.96
2.29
1872
2062
3.531934
ATTCATCGAGCAGTGATGTCA
57.468
42.857
11.16
2.83
42.96
3.58
1879
2069
5.069119
TGTGGAGTATTATTCATCGAGCAGT
59.931
40.000
0.00
0.00
0.00
4.40
1885
2075
7.543868
GGATCTTCTGTGGAGTATTATTCATCG
59.456
40.741
0.00
0.00
0.00
3.84
1895
2085
5.441500
CAGTCTAGGATCTTCTGTGGAGTA
58.558
45.833
0.00
0.00
0.00
2.59
1897
2087
3.636300
CCAGTCTAGGATCTTCTGTGGAG
59.364
52.174
0.00
0.00
0.00
3.86
1899
2089
3.131933
CACCAGTCTAGGATCTTCTGTGG
59.868
52.174
0.00
0.00
0.00
4.17
1951
2142
5.750547
CAGTTATAGTCATGACGCATCAAGT
59.249
40.000
19.85
10.67
38.69
3.16
1959
2150
7.649057
TCTGATTACCAGTTATAGTCATGACG
58.351
38.462
19.85
5.93
43.38
4.35
1963
2154
9.593565
TCTCATCTGATTACCAGTTATAGTCAT
57.406
33.333
0.00
0.00
43.38
3.06
1983
2174
8.568732
TTAACAAACCGTTGATTTTTCTCATC
57.431
30.769
0.00
0.00
38.63
2.92
1985
2176
8.191446
TGATTAACAAACCGTTGATTTTTCTCA
58.809
29.630
0.00
0.00
38.63
3.27
1999
2190
4.084013
CCACGTCTGTCTGATTAACAAACC
60.084
45.833
0.00
0.00
0.00
3.27
2000
2191
4.510340
ACCACGTCTGTCTGATTAACAAAC
59.490
41.667
0.00
0.00
0.00
2.93
2014
2205
1.076533
GCGTACATGGACCACGTCTG
61.077
60.000
1.43
0.00
37.95
3.51
2035
2230
2.487934
CTAGGCCACATCTTCCGAATG
58.512
52.381
5.01
0.00
0.00
2.67
2076
2271
1.476471
CCAGGGATCCAGCTGCTTTAG
60.476
57.143
15.23
0.00
0.00
1.85
2164
2359
1.095807
GCGATTCGGAAAGGAAGGGG
61.096
60.000
8.34
0.00
0.00
4.79
2261
2456
2.898729
AGTCACTTCCACAGTCACAG
57.101
50.000
0.00
0.00
25.81
3.66
2410
2629
8.830201
TCAAGAAACCCATGAAATATGTTTTG
57.170
30.769
0.00
0.00
31.78
2.44
2412
2631
7.550196
GCATCAAGAAACCCATGAAATATGTTT
59.450
33.333
0.00
0.00
33.55
2.83
2413
2632
7.043565
GCATCAAGAAACCCATGAAATATGTT
58.956
34.615
0.00
0.00
0.00
2.71
2414
2633
6.407299
GGCATCAAGAAACCCATGAAATATGT
60.407
38.462
0.00
0.00
0.00
2.29
2417
2636
5.127519
CAGGCATCAAGAAACCCATGAAATA
59.872
40.000
0.00
0.00
0.00
1.40
2432
2651
2.158769
ACAGTCTTCACACAGGCATCAA
60.159
45.455
0.00
0.00
0.00
2.57
2453
2672
4.100479
CCATGAAGGTGCCTGCAA
57.900
55.556
2.54
0.00
34.86
4.08
2526
2749
9.974980
GGATAGGAGAGAGTAAGTATTTTTCAG
57.025
37.037
0.00
0.00
0.00
3.02
2606
2830
8.094798
TGTCGTTGATTTAGCATACTTTTTCT
57.905
30.769
0.00
0.00
0.00
2.52
2662
2886
9.328845
ACTAGGAATTGTTAACTAAACGTCAAA
57.671
29.630
7.22
0.00
41.30
2.69
2663
2887
8.891671
ACTAGGAATTGTTAACTAAACGTCAA
57.108
30.769
7.22
0.00
41.30
3.18
2664
2888
8.891671
AACTAGGAATTGTTAACTAAACGTCA
57.108
30.769
7.22
0.00
41.30
4.35
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.