Multiple sequence alignment - TraesCS5D01G318000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G318000 chr5D 100.000 2663 0 0 1 2663 410875220 410872558 0.000000e+00 4918.0
1 TraesCS5D01G318000 chr5D 84.962 911 90 26 966 1845 410638272 410637378 0.000000e+00 880.0
2 TraesCS5D01G318000 chr5D 83.520 892 79 29 995 1845 410607146 410606282 0.000000e+00 771.0
3 TraesCS5D01G318000 chr5D 93.077 260 15 3 2238 2496 165643778 165644035 6.960000e-101 377.0
4 TraesCS5D01G318000 chr5D 85.321 218 29 2 6 220 388792442 388792659 3.450000e-54 222.0
5 TraesCS5D01G318000 chr5D 90.909 132 9 1 1 132 281217242 281217370 9.800000e-40 174.0
6 TraesCS5D01G318000 chr5D 91.667 84 7 0 1511 1594 410842794 410842711 1.670000e-22 117.0
7 TraesCS5D01G318000 chr5D 79.747 158 29 3 1485 1642 410620974 410621128 7.790000e-21 111.0
8 TraesCS5D01G318000 chr5D 80.282 142 25 3 1501 1642 410491456 410491594 1.300000e-18 104.0
9 TraesCS5D01G318000 chr5D 93.103 58 4 0 588 645 88339416 88339359 4.720000e-13 86.1
10 TraesCS5D01G318000 chr5D 78.947 133 17 2 521 642 281218288 281218420 2.200000e-11 80.5
11 TraesCS5D01G318000 chr5A 97.602 1001 23 1 845 1844 522868981 522867981 0.000000e+00 1714.0
12 TraesCS5D01G318000 chr5A 90.802 848 38 13 1843 2663 522867925 522867091 0.000000e+00 1098.0
13 TraesCS5D01G318000 chr5A 84.692 908 95 23 966 1845 522357688 522356797 0.000000e+00 867.0
14 TraesCS5D01G318000 chr5A 82.979 893 86 26 995 1845 522124624 522123756 0.000000e+00 747.0
15 TraesCS5D01G318000 chr5A 92.667 150 11 0 660 809 522869772 522869623 1.610000e-52 217.0
16 TraesCS5D01G318000 chr5A 79.487 156 29 3 1487 1642 522224376 522224528 1.010000e-19 108.0
17 TraesCS5D01G318000 chr5A 94.444 54 2 1 805 857 522869577 522869524 6.110000e-12 82.4
18 TraesCS5D01G318000 chr5A 97.727 44 1 0 599 642 472922632 472922675 2.840000e-10 76.8
19 TraesCS5D01G318000 chr5B 97.120 868 24 1 851 1717 493286773 493285906 0.000000e+00 1463.0
20 TraesCS5D01G318000 chr5B 84.199 905 87 29 981 1845 493125415 493124527 0.000000e+00 828.0
21 TraesCS5D01G318000 chr5B 84.460 843 71 27 995 1805 492820193 492819379 0.000000e+00 776.0
22 TraesCS5D01G318000 chr5B 90.578 329 6 8 1711 2038 493285508 493285204 1.910000e-111 412.0
23 TraesCS5D01G318000 chr5B 84.635 384 55 2 1050 1432 492782523 492782903 1.930000e-101 379.0
24 TraesCS5D01G318000 chr5B 95.146 206 8 2 2021 2225 493284880 493284676 9.190000e-85 324.0
25 TraesCS5D01G318000 chr5B 79.798 297 44 10 297 578 568186700 568186405 4.490000e-48 202.0
26 TraesCS5D01G318000 chr5B 87.861 173 14 2 644 809 493290091 493289919 2.090000e-46 196.0
27 TraesCS5D01G318000 chr5B 86.413 184 12 1 2493 2663 493284683 493284500 3.500000e-44 189.0
28 TraesCS5D01G318000 chr5B 82.963 135 17 5 1511 1642 493159576 493159445 1.670000e-22 117.0
29 TraesCS5D01G318000 chr5B 87.640 89 11 0 1501 1589 492783146 492783234 1.300000e-18 104.0
30 TraesCS5D01G318000 chr5B 76.500 200 37 8 1493 1691 493086029 493085839 1.690000e-17 100.0
31 TraesCS5D01G318000 chr3D 93.511 262 14 3 2234 2493 296989448 296989708 1.160000e-103 387.0
32 TraesCS5D01G318000 chr3D 91.139 79 7 0 2493 2571 138076315 138076237 1.010000e-19 108.0
33 TraesCS5D01G318000 chr3D 100.000 33 0 0 610 642 378114461 378114493 7.960000e-06 62.1
34 TraesCS5D01G318000 chr4A 92.565 269 16 4 2231 2496 632249895 632250162 1.500000e-102 383.0
35 TraesCS5D01G318000 chr4A 75.879 398 59 20 233 596 568901182 568900788 4.560000e-38 169.0
36 TraesCS5D01G318000 chr4A 80.576 139 18 7 1 130 542474854 542474716 6.070000e-17 99.0
37 TraesCS5D01G318000 chr4A 86.747 83 10 1 8 90 568912704 568912623 1.020000e-14 91.6
38 TraesCS5D01G318000 chr2B 92.251 271 18 3 2234 2502 256846338 256846069 5.380000e-102 381.0
39 TraesCS5D01G318000 chr2B 77.017 409 55 17 233 604 654353923 654353517 5.810000e-47 198.0
40 TraesCS5D01G318000 chr2B 91.111 90 8 0 1 90 158003075 158003164 3.600000e-24 122.0
41 TraesCS5D01G318000 chr2B 97.674 43 1 0 600 642 214840266 214840308 1.020000e-09 75.0
42 TraesCS5D01G318000 chr2B 94.444 36 0 2 2190 2224 514348610 514348576 1.000000e-03 54.7
43 TraesCS5D01G318000 chr7B 91.398 279 20 3 2234 2508 17330496 17330218 1.930000e-101 379.0
44 TraesCS5D01G318000 chr2D 92.481 266 16 4 2234 2496 409042355 409042619 6.960000e-101 377.0
45 TraesCS5D01G318000 chr2D 79.828 233 30 7 7 229 451299083 451299308 1.280000e-33 154.0
46 TraesCS5D01G318000 chr1D 92.453 265 18 2 2234 2496 317683707 317683971 6.960000e-101 377.0
47 TraesCS5D01G318000 chr1D 92.593 54 2 1 594 647 53167748 53167697 2.840000e-10 76.8
48 TraesCS5D01G318000 chr6D 90.288 278 24 3 2221 2496 328108474 328108750 7.010000e-96 361.0
49 TraesCS5D01G318000 chr6D 86.861 137 15 1 23 159 291741634 291741501 1.650000e-32 150.0
50 TraesCS5D01G318000 chr6D 91.954 87 7 0 1 87 407576819 407576733 3.600000e-24 122.0
51 TraesCS5D01G318000 chr6D 74.892 231 34 15 433 642 447287579 447287352 1.700000e-12 84.2
52 TraesCS5D01G318000 chr6D 94.595 37 0 2 2189 2224 452122062 452122027 3.700000e-04 56.5
53 TraesCS5D01G318000 chr4B 82.716 243 28 9 1 229 546299581 546299339 1.250000e-48 204.0
54 TraesCS5D01G318000 chr4B 89.873 79 8 0 2493 2571 664775639 664775717 4.690000e-18 102.0
55 TraesCS5D01G318000 chr4B 92.857 56 3 1 594 649 661308332 661308278 2.200000e-11 80.5
56 TraesCS5D01G318000 chr7D 81.328 241 33 3 1 229 140880023 140879783 4.530000e-43 185.0
57 TraesCS5D01G318000 chr7D 77.926 299 38 16 296 566 613888223 613887925 7.630000e-36 161.0
58 TraesCS5D01G318000 chr7D 74.151 383 61 17 297 642 383391668 383392049 1.000000e-24 124.0
59 TraesCS5D01G318000 chr7D 97.727 44 1 0 599 642 495156405 495156362 2.840000e-10 76.8
60 TraesCS5D01G318000 chr6A 87.919 149 15 1 8 156 276297606 276297751 3.520000e-39 172.0
61 TraesCS5D01G318000 chr6A 91.489 47 4 0 599 645 531449306 531449260 6.150000e-07 65.8
62 TraesCS5D01G318000 chr2A 86.232 138 10 1 1 129 104381053 104381190 9.940000e-30 141.0
63 TraesCS5D01G318000 chr2A 77.232 224 36 5 6 214 53987581 53987804 1.670000e-22 117.0
64 TraesCS5D01G318000 chr3B 79.703 202 29 6 40 229 717042640 717042841 4.620000e-28 135.0
65 TraesCS5D01G318000 chr3B 92.683 41 1 2 2186 2224 291303172 291303132 1.030000e-04 58.4
66 TraesCS5D01G318000 chr3B 97.059 34 0 1 2193 2225 226622141 226622108 3.700000e-04 56.5
67 TraesCS5D01G318000 chr3B 89.130 46 3 2 2178 2221 448755532 448755577 3.700000e-04 56.5
68 TraesCS5D01G318000 chr6B 82.581 155 16 6 6 159 320427502 320427358 2.780000e-25 126.0
69 TraesCS5D01G318000 chr6B 90.000 80 8 0 2493 2572 200777250 200777329 1.300000e-18 104.0
70 TraesCS5D01G318000 chr6B 96.875 32 0 1 2195 2225 576209866 576209835 5.000000e-03 52.8
71 TraesCS5D01G318000 chr7A 80.000 170 32 2 437 604 690920897 690920728 1.000000e-24 124.0
72 TraesCS5D01G318000 chr7A 92.308 78 6 0 2493 2570 112776899 112776976 7.790000e-21 111.0
73 TraesCS5D01G318000 chr7A 92.308 78 6 0 2493 2570 112799780 112799857 7.790000e-21 111.0
74 TraesCS5D01G318000 chr7A 91.026 78 7 0 2493 2570 112786327 112786250 3.630000e-19 106.0
75 TraesCS5D01G318000 chr7A 95.455 44 2 0 599 642 443176640 443176683 1.320000e-08 71.3
76 TraesCS5D01G318000 chr3A 89.655 87 8 1 2493 2578 156232059 156231973 2.800000e-20 110.0
77 TraesCS5D01G318000 chr3A 93.478 46 3 0 597 642 502263264 502263309 4.760000e-08 69.4
78 TraesCS5D01G318000 chr4D 90.123 81 6 2 2493 2572 323929648 323929569 1.300000e-18 104.0
79 TraesCS5D01G318000 chr1A 94.737 38 0 2 2189 2224 36269390 36269427 1.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G318000 chr5D 410872558 410875220 2662 True 4918.00 4918 100.00000 1 2663 1 chr5D.!!$R5 2662
1 TraesCS5D01G318000 chr5D 410637378 410638272 894 True 880.00 880 84.96200 966 1845 1 chr5D.!!$R3 879
2 TraesCS5D01G318000 chr5D 410606282 410607146 864 True 771.00 771 83.52000 995 1845 1 chr5D.!!$R2 850
3 TraesCS5D01G318000 chr5A 522356797 522357688 891 True 867.00 867 84.69200 966 1845 1 chr5A.!!$R2 879
4 TraesCS5D01G318000 chr5A 522867091 522869772 2681 True 777.85 1714 93.87875 660 2663 4 chr5A.!!$R3 2003
5 TraesCS5D01G318000 chr5A 522123756 522124624 868 True 747.00 747 82.97900 995 1845 1 chr5A.!!$R1 850
6 TraesCS5D01G318000 chr5B 493124527 493125415 888 True 828.00 828 84.19900 981 1845 1 chr5B.!!$R3 864
7 TraesCS5D01G318000 chr5B 492819379 492820193 814 True 776.00 776 84.46000 995 1805 1 chr5B.!!$R1 810
8 TraesCS5D01G318000 chr5B 493284500 493290091 5591 True 516.80 1463 91.42360 644 2663 5 chr5B.!!$R6 2019
9 TraesCS5D01G318000 chr5B 492782523 492783234 711 False 241.50 379 86.13750 1050 1589 2 chr5B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 613 0.027586 AAACAGACAAAGCGTGCGTC 59.972 50.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 6540 0.249073 ATCGCGATGCACACCTAGAC 60.249 55.0 23.04 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.611119 GGAGTAGGAGGAGGAGGC 57.389 66.667 0.00 0.00 0.00 4.70
18 19 1.935191 GGAGTAGGAGGAGGAGGCT 59.065 63.158 0.00 0.00 0.00 4.58
19 20 1.150872 GGAGTAGGAGGAGGAGGCTA 58.849 60.000 0.00 0.00 0.00 3.93
20 21 1.202964 GGAGTAGGAGGAGGAGGCTAC 60.203 61.905 0.00 0.00 0.00 3.58
21 22 0.854908 AGTAGGAGGAGGAGGCTACC 59.145 60.000 0.00 0.00 0.00 3.18
22 23 0.854908 GTAGGAGGAGGAGGCTACCT 59.145 60.000 7.02 7.02 43.64 3.08
23 24 2.064215 GTAGGAGGAGGAGGCTACCTA 58.936 57.143 7.24 0.00 40.73 3.08
24 25 0.854908 AGGAGGAGGAGGCTACCTAC 59.145 60.000 8.49 8.49 40.73 3.18
25 26 0.178955 GGAGGAGGAGGCTACCTACC 60.179 65.000 10.52 10.53 41.58 3.18
26 27 0.556747 GAGGAGGAGGCTACCTACCA 59.443 60.000 10.52 0.00 41.58 3.25
27 28 0.558712 AGGAGGAGGCTACCTACCAG 59.441 60.000 10.52 0.00 41.58 4.00
28 29 0.470268 GGAGGAGGCTACCTACCAGG 60.470 65.000 5.63 0.00 40.73 4.45
29 30 1.075151 AGGAGGCTACCTACCAGGC 60.075 63.158 0.00 0.00 39.63 4.85
30 31 2.499827 GGAGGCTACCTACCAGGCG 61.500 68.421 0.00 0.00 43.04 5.52
31 32 2.444140 AGGCTACCTACCAGGCGG 60.444 66.667 0.00 0.00 43.04 6.13
32 33 4.237207 GGCTACCTACCAGGCGGC 62.237 72.222 0.00 0.00 39.63 6.53
33 34 4.587189 GCTACCTACCAGGCGGCG 62.587 72.222 0.51 0.51 39.63 6.46
34 35 4.587189 CTACCTACCAGGCGGCGC 62.587 72.222 26.17 26.17 39.63 6.53
56 57 4.475135 GGCGGCCTTGGAGACCTC 62.475 72.222 12.87 0.00 0.00 3.85
73 74 2.127839 TCCATCGAGGATGAGTGGC 58.872 57.895 0.00 0.00 43.07 5.01
74 75 0.397675 TCCATCGAGGATGAGTGGCT 60.398 55.000 0.00 0.00 43.07 4.75
75 76 0.033228 CCATCGAGGATGAGTGGCTC 59.967 60.000 0.00 0.00 42.09 4.70
76 77 0.749049 CATCGAGGATGAGTGGCTCA 59.251 55.000 0.00 1.06 44.99 4.26
77 78 1.137675 CATCGAGGATGAGTGGCTCAA 59.862 52.381 2.80 0.00 44.04 3.02
78 79 0.820226 TCGAGGATGAGTGGCTCAAG 59.180 55.000 2.80 0.00 44.04 3.02
79 80 0.179089 CGAGGATGAGTGGCTCAAGG 60.179 60.000 2.80 0.00 44.04 3.61
80 81 0.463474 GAGGATGAGTGGCTCAAGGC 60.463 60.000 2.80 0.00 44.04 4.35
81 82 1.817099 GGATGAGTGGCTCAAGGCG 60.817 63.158 2.80 0.00 44.04 5.52
82 83 1.817099 GATGAGTGGCTCAAGGCGG 60.817 63.158 2.80 0.00 44.04 6.13
83 84 2.244117 GATGAGTGGCTCAAGGCGGA 62.244 60.000 2.80 0.00 44.04 5.54
84 85 2.125350 GAGTGGCTCAAGGCGGAG 60.125 66.667 5.05 5.05 44.42 4.63
85 86 3.672295 GAGTGGCTCAAGGCGGAGG 62.672 68.421 10.50 0.00 44.42 4.30
96 97 4.208686 GCGGAGGCGGACTACCAG 62.209 72.222 0.00 0.00 35.59 4.00
97 98 3.528370 CGGAGGCGGACTACCAGG 61.528 72.222 0.00 0.00 35.59 4.45
98 99 3.851128 GGAGGCGGACTACCAGGC 61.851 72.222 0.00 0.00 36.28 4.85
99 100 3.075005 GAGGCGGACTACCAGGCA 61.075 66.667 0.00 0.00 37.57 4.75
100 101 2.606519 AGGCGGACTACCAGGCAA 60.607 61.111 0.00 0.00 37.57 4.52
101 102 2.125106 GGCGGACTACCAGGCAAG 60.125 66.667 0.00 0.00 36.16 4.01
102 103 2.125106 GCGGACTACCAGGCAAGG 60.125 66.667 0.00 0.00 35.59 3.61
103 104 2.125106 CGGACTACCAGGCAAGGC 60.125 66.667 0.00 0.00 35.59 4.35
104 105 2.660064 CGGACTACCAGGCAAGGCT 61.660 63.158 0.00 0.00 35.59 4.58
105 106 1.078143 GGACTACCAGGCAAGGCTG 60.078 63.158 15.90 15.90 35.97 4.85
106 107 1.078143 GACTACCAGGCAAGGCTGG 60.078 63.158 33.28 33.28 45.70 4.85
129 130 4.166888 GCCATCGCCCTCTCTGCA 62.167 66.667 0.00 0.00 0.00 4.41
130 131 2.108566 CCATCGCCCTCTCTGCAG 59.891 66.667 7.63 7.63 0.00 4.41
131 132 2.588314 CATCGCCCTCTCTGCAGC 60.588 66.667 9.47 0.00 0.00 5.25
132 133 2.763292 ATCGCCCTCTCTGCAGCT 60.763 61.111 9.47 0.00 0.00 4.24
133 134 3.091499 ATCGCCCTCTCTGCAGCTG 62.091 63.158 10.11 10.11 0.00 4.24
134 135 4.834453 CGCCCTCTCTGCAGCTGG 62.834 72.222 17.12 10.46 0.00 4.85
183 184 4.742201 CTCACCCCCGTGACGCAG 62.742 72.222 0.00 0.00 44.20 5.18
208 209 2.282674 TGGCCGACCAGTACGTCT 60.283 61.111 0.00 0.00 42.67 4.18
209 210 2.181021 GGCCGACCAGTACGTCTG 59.819 66.667 0.00 0.00 43.27 3.51
216 217 2.181021 CAGTACGTCTGGACCGGC 59.819 66.667 0.00 0.00 40.23 6.13
217 218 3.066814 AGTACGTCTGGACCGGCC 61.067 66.667 0.00 4.32 37.10 6.13
218 219 3.376078 GTACGTCTGGACCGGCCA 61.376 66.667 15.52 15.52 46.96 5.36
234 235 2.490217 CAGGTACGGGAGCGTGAG 59.510 66.667 0.00 0.00 0.00 3.51
235 236 2.754658 AGGTACGGGAGCGTGAGG 60.755 66.667 0.00 0.00 0.00 3.86
236 237 2.753043 GGTACGGGAGCGTGAGGA 60.753 66.667 0.00 0.00 0.00 3.71
237 238 2.772691 GGTACGGGAGCGTGAGGAG 61.773 68.421 0.00 0.00 0.00 3.69
238 239 2.439701 TACGGGAGCGTGAGGAGG 60.440 66.667 0.00 0.00 0.00 4.30
239 240 2.975265 TACGGGAGCGTGAGGAGGA 61.975 63.158 0.00 0.00 0.00 3.71
240 241 2.888464 TACGGGAGCGTGAGGAGGAG 62.888 65.000 0.00 0.00 0.00 3.69
241 242 3.151022 GGGAGCGTGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
242 243 2.043852 GGAGCGTGAGGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
243 244 2.124693 GGAGCGTGAGGAGGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
244 245 2.043450 AGCGTGAGGAGGAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
245 246 2.043852 GCGTGAGGAGGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
246 247 2.124693 GCGTGAGGAGGAGGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
247 248 2.124693 CGTGAGGAGGAGGAGGAGC 61.125 68.421 0.00 0.00 0.00 4.70
248 249 2.124693 GTGAGGAGGAGGAGGAGCG 61.125 68.421 0.00 0.00 0.00 5.03
249 250 3.223589 GAGGAGGAGGAGGAGCGC 61.224 72.222 0.00 0.00 0.00 5.92
250 251 4.851214 AGGAGGAGGAGGAGCGCC 62.851 72.222 2.29 0.00 0.00 6.53
267 268 2.492090 CGCCAGAAGGAGGACGAG 59.508 66.667 0.00 0.00 36.89 4.18
268 269 2.896443 GCCAGAAGGAGGACGAGG 59.104 66.667 0.00 0.00 36.89 4.63
269 270 1.682684 GCCAGAAGGAGGACGAGGA 60.683 63.158 0.00 0.00 36.89 3.71
270 271 1.671901 GCCAGAAGGAGGACGAGGAG 61.672 65.000 0.00 0.00 36.89 3.69
271 272 0.323908 CCAGAAGGAGGACGAGGAGT 60.324 60.000 0.00 0.00 36.89 3.85
272 273 0.814457 CAGAAGGAGGACGAGGAGTG 59.186 60.000 0.00 0.00 0.00 3.51
273 274 0.968393 AGAAGGAGGACGAGGAGTGC 60.968 60.000 0.00 0.00 41.95 4.40
274 275 2.272918 GAAGGAGGACGAGGAGTGCG 62.273 65.000 0.00 0.00 46.56 5.34
275 276 4.500116 GGAGGACGAGGAGTGCGC 62.500 72.222 0.00 0.00 46.56 6.09
276 277 4.500116 GAGGACGAGGAGTGCGCC 62.500 72.222 4.18 0.00 46.56 6.53
291 292 4.054825 GCCCACCACGCCACATTG 62.055 66.667 0.00 0.00 0.00 2.82
292 293 4.054825 CCCACCACGCCACATTGC 62.055 66.667 0.00 0.00 0.00 3.56
293 294 4.054825 CCACCACGCCACATTGCC 62.055 66.667 0.00 0.00 0.00 4.52
294 295 3.293714 CACCACGCCACATTGCCA 61.294 61.111 0.00 0.00 0.00 4.92
295 296 3.294493 ACCACGCCACATTGCCAC 61.294 61.111 0.00 0.00 0.00 5.01
296 297 4.054825 CCACGCCACATTGCCACC 62.055 66.667 0.00 0.00 0.00 4.61
297 298 4.403137 CACGCCACATTGCCACCG 62.403 66.667 0.00 0.00 0.00 4.94
323 324 3.712907 GGCAACCCTGTCGGCCTA 61.713 66.667 0.00 0.00 43.09 3.93
324 325 2.590092 GCAACCCTGTCGGCCTAT 59.410 61.111 0.00 0.00 33.26 2.57
325 326 1.523938 GCAACCCTGTCGGCCTATC 60.524 63.158 0.00 0.00 33.26 2.08
326 327 1.904771 CAACCCTGTCGGCCTATCA 59.095 57.895 0.00 0.00 33.26 2.15
327 328 0.251916 CAACCCTGTCGGCCTATCAA 59.748 55.000 0.00 0.00 33.26 2.57
328 329 0.541863 AACCCTGTCGGCCTATCAAG 59.458 55.000 0.00 0.00 33.26 3.02
329 330 1.227674 CCCTGTCGGCCTATCAAGC 60.228 63.158 0.00 0.00 0.00 4.01
335 336 2.967615 GGCCTATCAAGCCGCGTC 60.968 66.667 4.92 0.00 41.41 5.19
336 337 2.967615 GCCTATCAAGCCGCGTCC 60.968 66.667 4.92 0.00 0.00 4.79
337 338 2.499205 CCTATCAAGCCGCGTCCA 59.501 61.111 4.92 0.00 0.00 4.02
338 339 1.592669 CCTATCAAGCCGCGTCCAG 60.593 63.158 4.92 0.00 0.00 3.86
339 340 2.202878 TATCAAGCCGCGTCCAGC 60.203 61.111 4.92 0.00 43.95 4.85
340 341 2.635229 CTATCAAGCCGCGTCCAGCT 62.635 60.000 4.92 3.00 45.59 4.24
341 342 2.906182 TATCAAGCCGCGTCCAGCTG 62.906 60.000 6.78 6.78 45.59 4.24
347 348 4.880537 CGCGTCCAGCTGGGCTAG 62.881 72.222 33.40 22.92 45.59 3.42
348 349 4.537433 GCGTCCAGCTGGGCTAGG 62.537 72.222 33.40 20.01 44.04 3.02
349 350 4.537433 CGTCCAGCTGGGCTAGGC 62.537 72.222 33.40 15.04 36.40 3.93
360 361 4.228567 GCTAGGCCGCCTCCTGTC 62.229 72.222 17.40 0.00 37.01 3.51
361 362 2.443016 CTAGGCCGCCTCCTGTCT 60.443 66.667 17.40 0.00 37.01 3.41
362 363 2.038975 TAGGCCGCCTCCTGTCTT 59.961 61.111 17.40 0.00 37.01 3.01
363 364 1.612442 TAGGCCGCCTCCTGTCTTT 60.612 57.895 17.40 0.00 37.01 2.52
364 365 0.324923 TAGGCCGCCTCCTGTCTTTA 60.325 55.000 17.40 0.00 37.01 1.85
365 366 0.983378 AGGCCGCCTCCTGTCTTTAT 60.983 55.000 5.94 0.00 34.56 1.40
366 367 0.533085 GGCCGCCTCCTGTCTTTATC 60.533 60.000 0.71 0.00 0.00 1.75
367 368 0.876342 GCCGCCTCCTGTCTTTATCG 60.876 60.000 0.00 0.00 0.00 2.92
368 369 0.744874 CCGCCTCCTGTCTTTATCGA 59.255 55.000 0.00 0.00 0.00 3.59
369 370 1.536284 CCGCCTCCTGTCTTTATCGAC 60.536 57.143 0.00 0.00 34.52 4.20
370 371 1.536284 CGCCTCCTGTCTTTATCGACC 60.536 57.143 0.00 0.00 32.97 4.79
371 372 1.757699 GCCTCCTGTCTTTATCGACCT 59.242 52.381 0.00 0.00 32.97 3.85
372 373 2.168728 GCCTCCTGTCTTTATCGACCTT 59.831 50.000 0.00 0.00 32.97 3.50
373 374 3.383825 GCCTCCTGTCTTTATCGACCTTA 59.616 47.826 0.00 0.00 32.97 2.69
374 375 4.737055 GCCTCCTGTCTTTATCGACCTTAC 60.737 50.000 0.00 0.00 32.97 2.34
375 376 4.202131 CCTCCTGTCTTTATCGACCTTACC 60.202 50.000 0.00 0.00 32.97 2.85
376 377 3.379372 TCCTGTCTTTATCGACCTTACCG 59.621 47.826 0.00 0.00 32.97 4.02
377 378 3.490419 CCTGTCTTTATCGACCTTACCGG 60.490 52.174 0.00 0.00 39.35 5.28
385 386 2.582436 ACCTTACCGGTGGCGATG 59.418 61.111 19.93 0.00 46.80 3.84
386 387 1.985662 ACCTTACCGGTGGCGATGA 60.986 57.895 19.93 0.00 46.80 2.92
387 388 1.520787 CCTTACCGGTGGCGATGAC 60.521 63.158 19.93 0.00 0.00 3.06
388 389 1.876714 CTTACCGGTGGCGATGACG 60.877 63.158 19.93 0.00 42.93 4.35
389 390 2.274232 CTTACCGGTGGCGATGACGA 62.274 60.000 19.93 0.00 42.66 4.20
397 398 3.549467 GCGATGACGACAAGTGCA 58.451 55.556 0.00 0.00 42.66 4.57
398 399 1.859398 GCGATGACGACAAGTGCAA 59.141 52.632 0.00 0.00 42.66 4.08
399 400 0.179240 GCGATGACGACAAGTGCAAG 60.179 55.000 0.00 0.00 42.66 4.01
400 401 0.439985 CGATGACGACAAGTGCAAGG 59.560 55.000 0.00 0.00 42.66 3.61
401 402 0.166814 GATGACGACAAGTGCAAGGC 59.833 55.000 0.00 0.00 0.00 4.35
402 403 1.568612 ATGACGACAAGTGCAAGGCG 61.569 55.000 8.57 8.57 0.00 5.52
403 404 2.954753 GACGACAAGTGCAAGGCGG 61.955 63.158 13.86 0.00 0.00 6.13
404 405 2.664851 CGACAAGTGCAAGGCGGA 60.665 61.111 2.60 0.00 0.00 5.54
405 406 2.034879 CGACAAGTGCAAGGCGGAT 61.035 57.895 2.60 0.00 0.00 4.18
406 407 1.503542 GACAAGTGCAAGGCGGATG 59.496 57.895 0.00 0.00 0.00 3.51
407 408 0.955428 GACAAGTGCAAGGCGGATGA 60.955 55.000 0.00 0.00 0.00 2.92
408 409 1.237285 ACAAGTGCAAGGCGGATGAC 61.237 55.000 0.00 0.00 0.00 3.06
409 410 0.957395 CAAGTGCAAGGCGGATGACT 60.957 55.000 0.00 0.00 31.31 3.41
410 411 0.613260 AAGTGCAAGGCGGATGACTA 59.387 50.000 0.00 0.00 28.27 2.59
411 412 0.176680 AGTGCAAGGCGGATGACTAG 59.823 55.000 0.00 0.00 28.27 2.57
412 413 0.811616 GTGCAAGGCGGATGACTAGG 60.812 60.000 0.00 0.00 28.27 3.02
413 414 1.227674 GCAAGGCGGATGACTAGGG 60.228 63.158 0.00 0.00 28.27 3.53
414 415 1.227674 CAAGGCGGATGACTAGGGC 60.228 63.158 0.00 0.00 28.27 5.19
415 416 1.689233 AAGGCGGATGACTAGGGCA 60.689 57.895 0.00 0.00 28.27 5.36
416 417 1.690219 AAGGCGGATGACTAGGGCAG 61.690 60.000 0.00 0.00 28.27 4.85
417 418 2.435693 GGCGGATGACTAGGGCAGT 61.436 63.158 0.00 0.00 41.47 4.40
418 419 1.227380 GCGGATGACTAGGGCAGTG 60.227 63.158 0.00 0.00 37.72 3.66
419 420 1.961180 GCGGATGACTAGGGCAGTGT 61.961 60.000 0.00 0.00 37.72 3.55
420 421 0.179100 CGGATGACTAGGGCAGTGTG 60.179 60.000 0.00 0.00 37.72 3.82
421 422 0.462759 GGATGACTAGGGCAGTGTGC 60.463 60.000 0.00 0.00 44.08 4.57
422 423 0.807667 GATGACTAGGGCAGTGTGCG 60.808 60.000 0.00 0.00 46.21 5.34
423 424 2.125512 GACTAGGGCAGTGTGCGG 60.126 66.667 0.00 0.00 46.21 5.69
424 425 3.665675 GACTAGGGCAGTGTGCGGG 62.666 68.421 0.00 0.00 46.21 6.13
430 431 4.264638 GCAGTGTGCGGGCGTTTT 62.265 61.111 0.00 0.00 31.71 2.43
431 432 2.411290 CAGTGTGCGGGCGTTTTT 59.589 55.556 0.00 0.00 0.00 1.94
453 454 6.644248 TTTTAGGTTTAAGAGGACTTTGGC 57.356 37.500 0.00 0.00 37.53 4.52
454 455 2.779506 AGGTTTAAGAGGACTTTGGCG 58.220 47.619 0.00 0.00 37.53 5.69
455 456 1.810755 GGTTTAAGAGGACTTTGGCGG 59.189 52.381 0.00 0.00 37.53 6.13
456 457 1.810755 GTTTAAGAGGACTTTGGCGGG 59.189 52.381 0.00 0.00 37.53 6.13
457 458 0.322187 TTAAGAGGACTTTGGCGGGC 60.322 55.000 0.00 0.00 37.53 6.13
458 459 2.515996 TAAGAGGACTTTGGCGGGCG 62.516 60.000 0.00 0.00 37.53 6.13
459 460 4.699522 GAGGACTTTGGCGGGCGT 62.700 66.667 0.00 0.00 0.00 5.68
460 461 4.265056 AGGACTTTGGCGGGCGTT 62.265 61.111 0.00 0.00 0.00 4.84
461 462 4.038080 GGACTTTGGCGGGCGTTG 62.038 66.667 0.00 0.00 0.00 4.10
462 463 2.975799 GACTTTGGCGGGCGTTGA 60.976 61.111 0.00 0.00 0.00 3.18
463 464 3.249973 GACTTTGGCGGGCGTTGAC 62.250 63.158 0.00 0.00 0.00 3.18
464 465 4.038080 CTTTGGCGGGCGTTGACC 62.038 66.667 0.00 0.00 0.00 4.02
473 474 2.263540 GCGTTGACCGGCCTCTTA 59.736 61.111 0.00 0.00 36.94 2.10
474 475 1.153429 GCGTTGACCGGCCTCTTAT 60.153 57.895 0.00 0.00 36.94 1.73
475 476 1.429148 GCGTTGACCGGCCTCTTATG 61.429 60.000 0.00 0.00 36.94 1.90
476 477 0.108329 CGTTGACCGGCCTCTTATGT 60.108 55.000 0.00 0.00 0.00 2.29
477 478 1.674817 CGTTGACCGGCCTCTTATGTT 60.675 52.381 0.00 0.00 0.00 2.71
478 479 2.433436 GTTGACCGGCCTCTTATGTTT 58.567 47.619 0.00 0.00 0.00 2.83
479 480 2.107950 TGACCGGCCTCTTATGTTTG 57.892 50.000 0.00 0.00 0.00 2.93
480 481 1.349688 TGACCGGCCTCTTATGTTTGT 59.650 47.619 0.00 0.00 0.00 2.83
481 482 2.568062 TGACCGGCCTCTTATGTTTGTA 59.432 45.455 0.00 0.00 0.00 2.41
482 483 3.199071 TGACCGGCCTCTTATGTTTGTAT 59.801 43.478 0.00 0.00 0.00 2.29
483 484 4.406326 TGACCGGCCTCTTATGTTTGTATA 59.594 41.667 0.00 0.00 0.00 1.47
484 485 5.071250 TGACCGGCCTCTTATGTTTGTATAT 59.929 40.000 0.00 0.00 0.00 0.86
485 486 5.937111 ACCGGCCTCTTATGTTTGTATATT 58.063 37.500 0.00 0.00 0.00 1.28
486 487 6.362248 ACCGGCCTCTTATGTTTGTATATTT 58.638 36.000 0.00 0.00 0.00 1.40
487 488 6.831868 ACCGGCCTCTTATGTTTGTATATTTT 59.168 34.615 0.00 0.00 0.00 1.82
488 489 7.340999 ACCGGCCTCTTATGTTTGTATATTTTT 59.659 33.333 0.00 0.00 0.00 1.94
489 490 7.860872 CCGGCCTCTTATGTTTGTATATTTTTC 59.139 37.037 0.00 0.00 0.00 2.29
490 491 8.621286 CGGCCTCTTATGTTTGTATATTTTTCT 58.379 33.333 0.00 0.00 0.00 2.52
508 509 7.569677 TTTTTCTAAATTTATTTCGGCCACG 57.430 32.000 2.24 0.00 42.74 4.94
509 510 4.281525 TCTAAATTTATTTCGGCCACGC 57.718 40.909 2.24 0.00 40.69 5.34
510 511 1.902840 AAATTTATTTCGGCCACGCG 58.097 45.000 3.53 3.53 40.69 6.01
511 512 0.099791 AATTTATTTCGGCCACGCGG 59.900 50.000 12.47 0.00 40.69 6.46
512 513 1.720694 ATTTATTTCGGCCACGCGGG 61.721 55.000 12.47 6.05 40.69 6.13
513 514 3.608993 TTATTTCGGCCACGCGGGT 62.609 57.895 12.47 0.00 40.69 5.28
519 520 3.597728 GGCCACGCGGGTCAAAAA 61.598 61.111 12.47 0.00 42.53 1.94
520 521 2.050442 GCCACGCGGGTCAAAAAG 60.050 61.111 12.47 0.00 39.65 2.27
521 522 2.642700 CCACGCGGGTCAAAAAGG 59.357 61.111 12.47 0.00 0.00 3.11
522 523 2.642700 CACGCGGGTCAAAAAGGG 59.357 61.111 12.47 0.00 0.00 3.95
523 524 2.190841 CACGCGGGTCAAAAAGGGT 61.191 57.895 12.47 0.00 0.00 4.34
524 525 0.885596 CACGCGGGTCAAAAAGGGTA 60.886 55.000 12.47 0.00 0.00 3.69
525 526 0.037160 ACGCGGGTCAAAAAGGGTAT 59.963 50.000 12.47 0.00 0.00 2.73
526 527 0.450184 CGCGGGTCAAAAAGGGTATG 59.550 55.000 0.00 0.00 0.00 2.39
527 528 0.172578 GCGGGTCAAAAAGGGTATGC 59.827 55.000 0.00 0.00 0.00 3.14
528 529 0.815095 CGGGTCAAAAAGGGTATGCC 59.185 55.000 0.00 0.00 0.00 4.40
529 530 1.615919 CGGGTCAAAAAGGGTATGCCT 60.616 52.381 0.00 0.00 34.45 4.75
530 531 2.536066 GGGTCAAAAAGGGTATGCCTT 58.464 47.619 0.00 0.00 34.45 4.35
531 532 2.496070 GGGTCAAAAAGGGTATGCCTTC 59.504 50.000 0.00 0.00 34.45 3.46
532 533 3.431415 GGTCAAAAAGGGTATGCCTTCT 58.569 45.455 0.00 0.00 34.45 2.85
533 534 3.193479 GGTCAAAAAGGGTATGCCTTCTG 59.807 47.826 0.00 0.00 34.45 3.02
534 535 3.826729 GTCAAAAAGGGTATGCCTTCTGT 59.173 43.478 0.00 0.00 34.45 3.41
535 536 4.280929 GTCAAAAAGGGTATGCCTTCTGTT 59.719 41.667 0.00 0.00 34.45 3.16
536 537 4.280677 TCAAAAAGGGTATGCCTTCTGTTG 59.719 41.667 0.00 0.00 34.45 3.33
537 538 2.514458 AAGGGTATGCCTTCTGTTGG 57.486 50.000 0.00 0.00 34.45 3.77
538 539 0.625849 AGGGTATGCCTTCTGTTGGG 59.374 55.000 0.00 0.00 34.45 4.12
543 544 3.042560 GCCTTCTGTTGGGCACAC 58.957 61.111 0.00 0.00 46.84 3.82
544 545 2.564721 GCCTTCTGTTGGGCACACC 61.565 63.158 0.00 0.00 46.84 4.16
545 546 1.151450 CCTTCTGTTGGGCACACCT 59.849 57.895 0.00 0.00 41.11 4.00
546 547 1.174712 CCTTCTGTTGGGCACACCTG 61.175 60.000 0.00 0.00 41.11 4.00
547 548 1.799258 CTTCTGTTGGGCACACCTGC 61.799 60.000 0.00 0.00 43.41 4.85
555 556 4.947147 GCACACCTGCCGACCCAA 62.947 66.667 0.00 0.00 37.45 4.12
556 557 2.203280 CACACCTGCCGACCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
557 558 1.826054 CACACCTGCCGACCCAAAA 60.826 57.895 0.00 0.00 0.00 2.44
558 559 1.826487 ACACCTGCCGACCCAAAAC 60.826 57.895 0.00 0.00 0.00 2.43
559 560 2.593436 ACCTGCCGACCCAAAACG 60.593 61.111 0.00 0.00 0.00 3.60
560 561 2.281208 CCTGCCGACCCAAAACGA 60.281 61.111 0.00 0.00 0.00 3.85
561 562 1.894756 CCTGCCGACCCAAAACGAA 60.895 57.895 0.00 0.00 0.00 3.85
562 563 1.448922 CCTGCCGACCCAAAACGAAA 61.449 55.000 0.00 0.00 0.00 3.46
563 564 0.382515 CTGCCGACCCAAAACGAAAA 59.617 50.000 0.00 0.00 0.00 2.29
564 565 0.382515 TGCCGACCCAAAACGAAAAG 59.617 50.000 0.00 0.00 0.00 2.27
565 566 0.937699 GCCGACCCAAAACGAAAAGC 60.938 55.000 0.00 0.00 0.00 3.51
567 568 0.659123 CGACCCAAAACGAAAAGCGG 60.659 55.000 0.00 0.00 46.49 5.52
568 569 0.664224 GACCCAAAACGAAAAGCGGA 59.336 50.000 0.00 0.00 46.49 5.54
569 570 1.268625 GACCCAAAACGAAAAGCGGAT 59.731 47.619 0.00 0.00 46.49 4.18
570 571 1.000717 ACCCAAAACGAAAAGCGGATG 60.001 47.619 0.00 0.00 46.49 3.51
571 572 1.059942 CCAAAACGAAAAGCGGATGC 58.940 50.000 0.00 0.00 46.49 3.91
589 590 4.492160 GCACGTCCGCCTGATCGA 62.492 66.667 0.00 0.00 0.00 3.59
590 591 2.579787 CACGTCCGCCTGATCGAC 60.580 66.667 0.00 0.00 0.00 4.20
591 592 3.823330 ACGTCCGCCTGATCGACC 61.823 66.667 0.00 0.00 0.00 4.79
592 593 4.570663 CGTCCGCCTGATCGACCC 62.571 72.222 0.00 0.00 0.00 4.46
593 594 3.458163 GTCCGCCTGATCGACCCA 61.458 66.667 0.00 0.00 0.00 4.51
594 595 2.682136 TCCGCCTGATCGACCCAA 60.682 61.111 0.00 0.00 0.00 4.12
595 596 2.267642 CCGCCTGATCGACCCAAA 59.732 61.111 0.00 0.00 0.00 3.28
596 597 2.106683 CCGCCTGATCGACCCAAAC 61.107 63.158 0.00 0.00 0.00 2.93
597 598 1.375396 CGCCTGATCGACCCAAACA 60.375 57.895 0.00 0.00 0.00 2.83
598 599 1.361668 CGCCTGATCGACCCAAACAG 61.362 60.000 0.00 0.00 0.00 3.16
599 600 0.036388 GCCTGATCGACCCAAACAGA 60.036 55.000 0.00 0.00 0.00 3.41
600 601 1.726853 CCTGATCGACCCAAACAGAC 58.273 55.000 0.00 0.00 0.00 3.51
601 602 1.001974 CCTGATCGACCCAAACAGACA 59.998 52.381 0.00 0.00 0.00 3.41
602 603 2.549992 CCTGATCGACCCAAACAGACAA 60.550 50.000 0.00 0.00 0.00 3.18
603 604 3.138304 CTGATCGACCCAAACAGACAAA 58.862 45.455 0.00 0.00 0.00 2.83
604 605 3.138304 TGATCGACCCAAACAGACAAAG 58.862 45.455 0.00 0.00 0.00 2.77
605 606 1.305201 TCGACCCAAACAGACAAAGC 58.695 50.000 0.00 0.00 0.00 3.51
606 607 0.041312 CGACCCAAACAGACAAAGCG 60.041 55.000 0.00 0.00 0.00 4.68
607 608 1.021968 GACCCAAACAGACAAAGCGT 58.978 50.000 0.00 0.00 0.00 5.07
608 609 0.738389 ACCCAAACAGACAAAGCGTG 59.262 50.000 0.00 0.00 0.00 5.34
609 610 0.594796 CCCAAACAGACAAAGCGTGC 60.595 55.000 0.00 0.00 0.00 5.34
610 611 0.929824 CCAAACAGACAAAGCGTGCG 60.930 55.000 0.00 0.00 0.00 5.34
611 612 0.248054 CAAACAGACAAAGCGTGCGT 60.248 50.000 0.00 0.00 0.00 5.24
612 613 0.027586 AAACAGACAAAGCGTGCGTC 59.972 50.000 0.00 0.00 0.00 5.19
613 614 1.772063 AACAGACAAAGCGTGCGTCC 61.772 55.000 0.00 0.00 0.00 4.79
614 615 3.036084 AGACAAAGCGTGCGTCCG 61.036 61.111 0.00 0.00 0.00 4.79
615 616 3.335534 GACAAAGCGTGCGTCCGT 61.336 61.111 0.00 0.00 0.00 4.69
616 617 2.877974 GACAAAGCGTGCGTCCGTT 61.878 57.895 0.00 0.00 0.00 4.44
617 618 2.326550 CAAAGCGTGCGTCCGTTT 59.673 55.556 0.00 0.00 32.47 3.60
618 619 2.003443 CAAAGCGTGCGTCCGTTTG 61.003 57.895 0.00 4.86 31.51 2.93
619 620 3.175976 AAAGCGTGCGTCCGTTTGG 62.176 57.895 0.00 0.00 31.51 3.28
622 623 3.708734 CGTGCGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
636 637 4.324991 GGTCGCCCGGTTGGAGTT 62.325 66.667 0.00 0.00 37.49 3.01
637 638 3.047877 GTCGCCCGGTTGGAGTTG 61.048 66.667 0.00 0.00 37.49 3.16
640 641 3.056328 GCCCGGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 37.49 4.26
641 642 2.750350 CCCGGTTGGAGTTGCTCT 59.250 61.111 0.00 0.00 37.49 4.09
642 643 1.672356 CCCGGTTGGAGTTGCTCTG 60.672 63.158 0.00 0.00 37.49 3.35
724 732 2.092753 TCTGAAATGTGGGCTCCTGATC 60.093 50.000 0.00 0.00 0.00 2.92
729 737 0.904865 TGTGGGCTCCTGATCGAACT 60.905 55.000 0.00 0.00 0.00 3.01
732 740 0.827368 GGGCTCCTGATCGAACTTCT 59.173 55.000 0.00 0.00 0.00 2.85
754 762 3.373226 CTTGCATGCAAGCACCCT 58.627 55.556 39.24 0.00 45.61 4.34
768 776 1.348036 GCACCCTGGGGCTAGTTATAG 59.652 57.143 18.88 0.00 39.32 1.31
789 797 3.551496 TTGCACAAGGCCTCGGGAG 62.551 63.158 5.23 0.00 43.89 4.30
867 4136 6.650427 TCAAGTTATAGATACGTGCCATCT 57.350 37.500 0.00 0.74 36.68 2.90
973 4242 1.066257 GGCTGCAACAACACCACAG 59.934 57.895 0.50 0.00 0.00 3.66
1227 4508 1.229400 AAGCCGGGGTTACTCCAGA 60.229 57.895 10.24 0.00 38.11 3.86
1931 5900 0.178767 CATTCGCTCCATGGAGACCA 59.821 55.000 40.29 24.12 44.53 4.02
1932 5901 0.911769 ATTCGCTCCATGGAGACCAA 59.088 50.000 40.29 27.91 44.53 3.67
1933 5902 0.036388 TTCGCTCCATGGAGACCAAC 60.036 55.000 40.29 22.98 44.53 3.77
1934 5903 1.450312 CGCTCCATGGAGACCAACC 60.450 63.158 40.29 22.31 44.53 3.77
1935 5904 1.685224 GCTCCATGGAGACCAACCA 59.315 57.895 40.29 4.80 44.53 3.67
1936 5905 0.038166 GCTCCATGGAGACCAACCAA 59.962 55.000 40.29 4.01 44.53 3.67
1937 5906 1.341383 GCTCCATGGAGACCAACCAAT 60.341 52.381 40.29 0.00 44.53 3.16
1938 5907 2.885554 GCTCCATGGAGACCAACCAATT 60.886 50.000 40.29 0.00 44.53 2.32
1939 5908 2.756760 CTCCATGGAGACCAACCAATTG 59.243 50.000 34.54 5.12 44.53 2.32
1950 5919 7.123547 GGAGACCAACCAATTGAACCAAATATA 59.876 37.037 7.12 0.00 38.15 0.86
1970 5939 2.123409 TGGCAACAGAAACCAAGGC 58.877 52.632 0.00 0.00 46.17 4.35
2050 6360 1.950909 CTGTTTTTGGACGGCCTAACA 59.049 47.619 9.82 15.36 33.17 2.41
2064 6374 6.735130 ACGGCCTAACAAATATGATAAAAGC 58.265 36.000 0.00 0.00 0.00 3.51
2224 6534 4.324022 CCCTCCGTCCCAAAATAAGTACTT 60.324 45.833 13.68 13.68 0.00 2.24
2230 6540 5.063060 CGTCCCAAAATAAGTACTTCCTTCG 59.937 44.000 12.39 2.93 0.00 3.79
2236 6546 7.491696 CCAAAATAAGTACTTCCTTCGTCTAGG 59.508 40.741 12.39 0.00 36.59 3.02
2240 6550 3.757493 AGTACTTCCTTCGTCTAGGTGTG 59.243 47.826 0.00 0.00 36.63 3.82
2249 6578 0.249073 GTCTAGGTGTGCATCGCGAT 60.249 55.000 17.62 17.62 0.00 4.58
2254 6583 1.349627 GTGTGCATCGCGATCAAGG 59.650 57.895 20.85 9.36 0.00 3.61
2272 6601 0.464554 GGCGGAGGGGAAAATGAGAG 60.465 60.000 0.00 0.00 0.00 3.20
2281 6610 6.319911 GGAGGGGAAAATGAGAGAACTTAATG 59.680 42.308 0.00 0.00 0.00 1.90
2347 6679 7.293745 CACTGTATGTCATGTTTGAAAGTCTC 58.706 38.462 0.00 0.00 32.48 3.36
2367 6699 5.061808 GTCTCAAATCATTGAAAGCATGCAC 59.938 40.000 21.98 11.31 44.64 4.57
2376 6708 0.895100 AAAGCATGCACGACCCACAT 60.895 50.000 21.98 0.00 0.00 3.21
2406 6738 6.378710 TTGGTTGATATGTCACGAAACAAA 57.621 33.333 0.00 0.00 33.11 2.83
2429 6761 2.087646 ACGAGGAGGGAGTTAACGTAC 58.912 52.381 0.00 0.00 0.00 3.67
2451 6784 3.186817 CCGTGCGTAAGTGTTTTGGATTA 59.813 43.478 0.00 0.00 41.68 1.75
2485 6818 4.373348 AAGATGACTTACGCACCTAGAC 57.627 45.455 0.00 0.00 34.28 2.59
2545 6878 7.636326 ACAAAGTTATACTACAGTTGCAACAC 58.364 34.615 30.11 16.12 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.150872 TAGCCTCCTCCTCCTACTCC 58.849 60.000 0.00 0.00 0.00 3.85
2 3 0.854908 GGTAGCCTCCTCCTCCTACT 59.145 60.000 0.00 0.00 32.73 2.57
3 4 0.854908 AGGTAGCCTCCTCCTCCTAC 59.145 60.000 0.00 0.00 31.32 3.18
4 5 2.064215 GTAGGTAGCCTCCTCCTCCTA 58.936 57.143 0.31 0.00 38.86 2.94
5 6 0.854908 GTAGGTAGCCTCCTCCTCCT 59.145 60.000 0.31 0.00 38.86 3.69
8 9 0.558712 CTGGTAGGTAGCCTCCTCCT 59.441 60.000 0.31 0.00 38.86 3.69
9 10 0.470268 CCTGGTAGGTAGCCTCCTCC 60.470 65.000 0.31 4.10 38.86 4.30
10 11 1.116536 GCCTGGTAGGTAGCCTCCTC 61.117 65.000 0.31 0.00 37.80 3.71
11 12 1.075151 GCCTGGTAGGTAGCCTCCT 60.075 63.158 0.00 2.85 37.80 3.69
12 13 2.499827 CGCCTGGTAGGTAGCCTCC 61.500 68.421 0.00 0.00 37.80 4.30
13 14 2.499827 CCGCCTGGTAGGTAGCCTC 61.500 68.421 0.00 0.00 37.80 4.70
14 15 2.444140 CCGCCTGGTAGGTAGCCT 60.444 66.667 0.00 0.00 37.80 4.58
15 16 4.237207 GCCGCCTGGTAGGTAGCC 62.237 72.222 11.05 0.00 37.80 3.93
16 17 4.587189 CGCCGCCTGGTAGGTAGC 62.587 72.222 11.05 0.00 37.80 3.58
17 18 4.587189 GCGCCGCCTGGTAGGTAG 62.587 72.222 0.00 7.54 37.80 3.18
39 40 4.475135 GAGGTCTCCAAGGCCGCC 62.475 72.222 0.00 0.00 46.90 6.13
40 41 4.475135 GGAGGTCTCCAAGGCCGC 62.475 72.222 11.85 0.00 46.90 6.53
56 57 0.033228 GAGCCACTCATCCTCGATGG 59.967 60.000 1.98 0.00 40.15 3.51
57 58 0.749049 TGAGCCACTCATCCTCGATG 59.251 55.000 0.00 0.00 41.00 3.84
58 59 1.411977 CTTGAGCCACTCATCCTCGAT 59.588 52.381 0.00 0.00 40.39 3.59
59 60 0.820226 CTTGAGCCACTCATCCTCGA 59.180 55.000 0.00 0.00 40.39 4.04
60 61 0.179089 CCTTGAGCCACTCATCCTCG 60.179 60.000 0.00 0.00 40.39 4.63
61 62 0.463474 GCCTTGAGCCACTCATCCTC 60.463 60.000 0.00 0.00 40.39 3.71
62 63 1.606531 GCCTTGAGCCACTCATCCT 59.393 57.895 0.00 0.00 40.39 3.24
63 64 1.817099 CGCCTTGAGCCACTCATCC 60.817 63.158 0.00 0.00 40.39 3.51
64 65 1.817099 CCGCCTTGAGCCACTCATC 60.817 63.158 0.00 0.00 40.39 2.92
65 66 2.249413 CTCCGCCTTGAGCCACTCAT 62.249 60.000 0.00 0.00 40.39 2.90
66 67 2.922503 TCCGCCTTGAGCCACTCA 60.923 61.111 0.00 0.00 38.87 3.41
67 68 2.125350 CTCCGCCTTGAGCCACTC 60.125 66.667 0.00 0.00 38.78 3.51
68 69 3.710722 CCTCCGCCTTGAGCCACT 61.711 66.667 0.00 0.00 38.78 4.00
73 74 4.821589 GTCCGCCTCCGCCTTGAG 62.822 72.222 0.00 0.00 0.00 3.02
74 75 3.949885 TAGTCCGCCTCCGCCTTGA 62.950 63.158 0.00 0.00 0.00 3.02
75 76 3.458163 TAGTCCGCCTCCGCCTTG 61.458 66.667 0.00 0.00 0.00 3.61
76 77 3.459063 GTAGTCCGCCTCCGCCTT 61.459 66.667 0.00 0.00 0.00 4.35
79 80 4.208686 CTGGTAGTCCGCCTCCGC 62.209 72.222 0.00 0.00 36.30 5.54
80 81 3.528370 CCTGGTAGTCCGCCTCCG 61.528 72.222 0.00 0.00 36.30 4.63
81 82 3.851128 GCCTGGTAGTCCGCCTCC 61.851 72.222 0.00 0.00 36.30 4.30
82 83 2.579684 CTTGCCTGGTAGTCCGCCTC 62.580 65.000 0.00 0.00 36.30 4.70
83 84 2.606519 TTGCCTGGTAGTCCGCCT 60.607 61.111 0.00 0.00 36.30 5.52
84 85 2.125106 CTTGCCTGGTAGTCCGCC 60.125 66.667 0.00 0.00 36.30 6.13
85 86 2.125106 CCTTGCCTGGTAGTCCGC 60.125 66.667 0.00 0.00 36.30 5.54
86 87 2.125106 GCCTTGCCTGGTAGTCCG 60.125 66.667 0.00 0.00 36.30 4.79
87 88 1.078143 CAGCCTTGCCTGGTAGTCC 60.078 63.158 0.00 0.00 0.00 3.85
88 89 1.078143 CCAGCCTTGCCTGGTAGTC 60.078 63.158 0.00 0.00 45.87 2.59
89 90 3.081554 CCAGCCTTGCCTGGTAGT 58.918 61.111 0.00 0.00 45.87 2.73
112 113 4.166888 TGCAGAGAGGGCGATGGC 62.167 66.667 0.00 0.00 38.90 4.40
113 114 2.108566 CTGCAGAGAGGGCGATGG 59.891 66.667 8.42 0.00 0.00 3.51
114 115 2.588314 GCTGCAGAGAGGGCGATG 60.588 66.667 20.43 0.00 0.00 3.84
115 116 2.763292 AGCTGCAGAGAGGGCGAT 60.763 61.111 20.43 0.00 0.00 4.58
116 117 3.767806 CAGCTGCAGAGAGGGCGA 61.768 66.667 20.43 0.00 0.00 5.54
117 118 4.834453 CCAGCTGCAGAGAGGGCG 62.834 72.222 20.43 0.00 0.00 6.13
119 120 4.834453 CGCCAGCTGCAGAGAGGG 62.834 72.222 20.43 13.16 41.33 4.30
120 121 3.767806 TCGCCAGCTGCAGAGAGG 61.768 66.667 20.43 16.13 41.33 3.69
121 122 2.508887 GTCGCCAGCTGCAGAGAG 60.509 66.667 20.43 7.08 41.33 3.20
122 123 2.993840 AGTCGCCAGCTGCAGAGA 60.994 61.111 20.43 5.04 41.33 3.10
123 124 2.814341 CAGTCGCCAGCTGCAGAG 60.814 66.667 20.43 8.91 41.33 3.35
128 129 3.561213 CGATGCAGTCGCCAGCTG 61.561 66.667 6.78 6.78 44.33 4.24
166 167 4.742201 CTGCGTCACGGGGGTGAG 62.742 72.222 0.00 0.00 33.58 3.51
191 192 2.282674 AGACGTACTGGTCGGCCA 60.283 61.111 9.26 9.26 43.73 5.36
192 193 2.181021 CAGACGTACTGGTCGGCC 59.819 66.667 0.00 0.00 42.39 6.13
199 200 2.181021 GCCGGTCCAGACGTACTG 59.819 66.667 1.90 7.72 45.36 2.74
200 201 3.066814 GGCCGGTCCAGACGTACT 61.067 66.667 1.90 0.00 34.01 2.73
201 202 3.376078 TGGCCGGTCCAGACGTAC 61.376 66.667 12.86 0.00 40.72 3.67
223 224 3.522731 CTCCTCCTCACGCTCCCG 61.523 72.222 0.00 0.00 41.14 5.14
224 225 3.151022 CCTCCTCCTCACGCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
225 226 2.043852 TCCTCCTCCTCACGCTCC 60.044 66.667 0.00 0.00 0.00 4.70
226 227 2.124693 CCTCCTCCTCCTCACGCTC 61.125 68.421 0.00 0.00 0.00 5.03
227 228 2.043450 CCTCCTCCTCCTCACGCT 60.043 66.667 0.00 0.00 0.00 5.07
228 229 2.043852 TCCTCCTCCTCCTCACGC 60.044 66.667 0.00 0.00 0.00 5.34
229 230 2.124693 GCTCCTCCTCCTCCTCACG 61.125 68.421 0.00 0.00 0.00 4.35
230 231 2.124693 CGCTCCTCCTCCTCCTCAC 61.125 68.421 0.00 0.00 0.00 3.51
231 232 2.277072 CGCTCCTCCTCCTCCTCA 59.723 66.667 0.00 0.00 0.00 3.86
232 233 3.223589 GCGCTCCTCCTCCTCCTC 61.224 72.222 0.00 0.00 0.00 3.71
233 234 4.851214 GGCGCTCCTCCTCCTCCT 62.851 72.222 7.64 0.00 0.00 3.69
247 248 4.821589 GTCCTCCTTCTGGCGGCG 62.822 72.222 0.51 0.51 38.10 6.46
248 249 4.821589 CGTCCTCCTTCTGGCGGC 62.822 72.222 0.00 0.00 38.10 6.53
249 250 3.068691 TCGTCCTCCTTCTGGCGG 61.069 66.667 0.00 0.00 39.54 6.13
250 251 2.492090 CTCGTCCTCCTTCTGGCG 59.508 66.667 0.00 0.00 0.00 5.69
251 252 1.671901 CTCCTCGTCCTCCTTCTGGC 61.672 65.000 0.00 0.00 0.00 4.85
252 253 0.323908 ACTCCTCGTCCTCCTTCTGG 60.324 60.000 0.00 0.00 0.00 3.86
253 254 0.814457 CACTCCTCGTCCTCCTTCTG 59.186 60.000 0.00 0.00 0.00 3.02
254 255 0.968393 GCACTCCTCGTCCTCCTTCT 60.968 60.000 0.00 0.00 0.00 2.85
255 256 1.513622 GCACTCCTCGTCCTCCTTC 59.486 63.158 0.00 0.00 0.00 3.46
256 257 2.344203 CGCACTCCTCGTCCTCCTT 61.344 63.158 0.00 0.00 0.00 3.36
257 258 2.752238 CGCACTCCTCGTCCTCCT 60.752 66.667 0.00 0.00 0.00 3.69
258 259 4.500116 GCGCACTCCTCGTCCTCC 62.500 72.222 0.30 0.00 0.00 4.30
259 260 4.500116 GGCGCACTCCTCGTCCTC 62.500 72.222 10.83 0.00 0.00 3.71
274 275 4.054825 CAATGTGGCGTGGTGGGC 62.055 66.667 0.00 0.00 0.00 5.36
275 276 4.054825 GCAATGTGGCGTGGTGGG 62.055 66.667 0.00 0.00 0.00 4.61
276 277 4.054825 GGCAATGTGGCGTGGTGG 62.055 66.667 0.00 0.00 31.79 4.61
300 301 3.368571 GACAGGGTTGCCTGCTGC 61.369 66.667 0.00 0.00 41.12 5.25
301 302 3.052082 CGACAGGGTTGCCTGCTG 61.052 66.667 0.00 0.00 41.12 4.41
302 303 4.335647 CCGACAGGGTTGCCTGCT 62.336 66.667 0.00 0.00 41.12 4.24
306 307 2.942648 GATAGGCCGACAGGGTTGCC 62.943 65.000 0.00 0.00 44.35 4.52
307 308 1.523938 GATAGGCCGACAGGGTTGC 60.524 63.158 0.00 0.00 38.44 4.17
308 309 0.251916 TTGATAGGCCGACAGGGTTG 59.748 55.000 0.00 0.00 38.44 3.77
309 310 0.541863 CTTGATAGGCCGACAGGGTT 59.458 55.000 0.00 0.00 38.44 4.11
310 311 1.972660 GCTTGATAGGCCGACAGGGT 61.973 60.000 0.00 0.00 38.44 4.34
311 312 1.227674 GCTTGATAGGCCGACAGGG 60.228 63.158 0.00 0.00 38.20 4.45
312 313 1.227674 GGCTTGATAGGCCGACAGG 60.228 63.158 0.00 0.61 40.92 4.00
313 314 4.445699 GGCTTGATAGGCCGACAG 57.554 61.111 0.00 0.00 40.92 3.51
318 319 2.967615 GACGCGGCTTGATAGGCC 60.968 66.667 12.47 0.00 43.72 5.19
319 320 2.967615 GGACGCGGCTTGATAGGC 60.968 66.667 13.91 0.00 43.21 3.93
320 321 1.592669 CTGGACGCGGCTTGATAGG 60.593 63.158 13.91 0.00 0.00 2.57
321 322 2.240500 GCTGGACGCGGCTTGATAG 61.241 63.158 13.91 4.06 0.00 2.08
322 323 2.202878 GCTGGACGCGGCTTGATA 60.203 61.111 13.91 0.00 0.00 2.15
323 324 4.087892 AGCTGGACGCGGCTTGAT 62.088 61.111 13.91 0.00 45.59 2.57
330 331 4.880537 CTAGCCCAGCTGGACGCG 62.881 72.222 34.91 18.17 45.59 6.01
331 332 4.537433 CCTAGCCCAGCTGGACGC 62.537 72.222 34.91 27.96 39.54 5.19
332 333 4.537433 GCCTAGCCCAGCTGGACG 62.537 72.222 34.91 19.34 39.54 4.79
333 334 4.182433 GGCCTAGCCCAGCTGGAC 62.182 72.222 34.91 24.22 44.06 4.02
343 344 4.228567 GACAGGAGGCGGCCTAGC 62.229 72.222 23.92 10.63 36.22 3.42
344 345 1.617947 AAAGACAGGAGGCGGCCTAG 61.618 60.000 23.92 17.07 36.22 3.02
345 346 0.324923 TAAAGACAGGAGGCGGCCTA 60.325 55.000 23.92 0.00 36.22 3.93
346 347 0.983378 ATAAAGACAGGAGGCGGCCT 60.983 55.000 24.13 24.13 39.37 5.19
347 348 0.533085 GATAAAGACAGGAGGCGGCC 60.533 60.000 12.11 12.11 0.00 6.13
348 349 0.876342 CGATAAAGACAGGAGGCGGC 60.876 60.000 0.00 0.00 0.00 6.53
349 350 0.744874 TCGATAAAGACAGGAGGCGG 59.255 55.000 0.00 0.00 0.00 6.13
350 351 1.536284 GGTCGATAAAGACAGGAGGCG 60.536 57.143 0.00 0.00 42.62 5.52
351 352 1.757699 AGGTCGATAAAGACAGGAGGC 59.242 52.381 0.00 0.00 42.62 4.70
352 353 4.202131 GGTAAGGTCGATAAAGACAGGAGG 60.202 50.000 0.00 0.00 42.62 4.30
353 354 4.497674 CGGTAAGGTCGATAAAGACAGGAG 60.498 50.000 0.00 0.00 42.62 3.69
354 355 3.379372 CGGTAAGGTCGATAAAGACAGGA 59.621 47.826 0.00 0.00 42.62 3.86
355 356 3.490419 CCGGTAAGGTCGATAAAGACAGG 60.490 52.174 0.00 0.00 42.62 4.00
356 357 3.703420 CCGGTAAGGTCGATAAAGACAG 58.297 50.000 0.00 0.00 42.62 3.51
357 358 3.788333 CCGGTAAGGTCGATAAAGACA 57.212 47.619 0.00 0.00 42.62 3.41
370 371 1.876714 CGTCATCGCCACCGGTAAG 60.877 63.158 6.87 2.34 34.56 2.34
371 372 2.182284 CGTCATCGCCACCGGTAA 59.818 61.111 6.87 0.00 34.56 2.85
372 373 2.751036 TCGTCATCGCCACCGGTA 60.751 61.111 6.87 0.00 36.96 4.02
373 374 4.430765 GTCGTCATCGCCACCGGT 62.431 66.667 0.00 0.00 36.96 5.28
374 375 3.925362 TTGTCGTCATCGCCACCGG 62.925 63.158 0.00 0.00 36.96 5.28
375 376 2.431771 TTGTCGTCATCGCCACCG 60.432 61.111 0.00 0.00 36.96 4.94
376 377 1.374252 ACTTGTCGTCATCGCCACC 60.374 57.895 0.00 0.00 36.96 4.61
377 378 1.781555 CACTTGTCGTCATCGCCAC 59.218 57.895 0.00 0.00 36.96 5.01
378 379 2.027073 GCACTTGTCGTCATCGCCA 61.027 57.895 0.00 0.00 36.96 5.69
379 380 1.565156 TTGCACTTGTCGTCATCGCC 61.565 55.000 0.00 0.00 36.96 5.54
380 381 0.179240 CTTGCACTTGTCGTCATCGC 60.179 55.000 0.00 0.00 36.96 4.58
381 382 0.439985 CCTTGCACTTGTCGTCATCG 59.560 55.000 0.00 0.00 38.55 3.84
382 383 0.166814 GCCTTGCACTTGTCGTCATC 59.833 55.000 0.00 0.00 0.00 2.92
383 384 1.568612 CGCCTTGCACTTGTCGTCAT 61.569 55.000 0.00 0.00 0.00 3.06
384 385 2.243957 CGCCTTGCACTTGTCGTCA 61.244 57.895 0.00 0.00 0.00 4.35
385 386 2.551270 CGCCTTGCACTTGTCGTC 59.449 61.111 0.00 0.00 0.00 4.20
386 387 2.731691 ATCCGCCTTGCACTTGTCGT 62.732 55.000 0.00 0.00 0.00 4.34
387 388 2.034879 ATCCGCCTTGCACTTGTCG 61.035 57.895 0.00 0.00 0.00 4.35
388 389 0.955428 TCATCCGCCTTGCACTTGTC 60.955 55.000 0.00 0.00 0.00 3.18
389 390 1.073025 TCATCCGCCTTGCACTTGT 59.927 52.632 0.00 0.00 0.00 3.16
390 391 0.957395 AGTCATCCGCCTTGCACTTG 60.957 55.000 0.00 0.00 0.00 3.16
391 392 0.613260 TAGTCATCCGCCTTGCACTT 59.387 50.000 0.00 0.00 0.00 3.16
392 393 0.176680 CTAGTCATCCGCCTTGCACT 59.823 55.000 0.00 0.00 0.00 4.40
393 394 0.811616 CCTAGTCATCCGCCTTGCAC 60.812 60.000 0.00 0.00 0.00 4.57
394 395 1.522092 CCTAGTCATCCGCCTTGCA 59.478 57.895 0.00 0.00 0.00 4.08
395 396 1.227674 CCCTAGTCATCCGCCTTGC 60.228 63.158 0.00 0.00 0.00 4.01
396 397 1.227674 GCCCTAGTCATCCGCCTTG 60.228 63.158 0.00 0.00 0.00 3.61
397 398 1.689233 TGCCCTAGTCATCCGCCTT 60.689 57.895 0.00 0.00 0.00 4.35
398 399 2.041922 TGCCCTAGTCATCCGCCT 60.042 61.111 0.00 0.00 0.00 5.52
399 400 2.423446 CTGCCCTAGTCATCCGCC 59.577 66.667 0.00 0.00 0.00 6.13
400 401 1.227380 CACTGCCCTAGTCATCCGC 60.227 63.158 0.00 0.00 37.60 5.54
401 402 0.179100 CACACTGCCCTAGTCATCCG 60.179 60.000 0.00 0.00 37.60 4.18
402 403 0.462759 GCACACTGCCCTAGTCATCC 60.463 60.000 0.00 0.00 37.60 3.51
403 404 0.807667 CGCACACTGCCCTAGTCATC 60.808 60.000 0.00 0.00 41.12 2.92
404 405 1.219124 CGCACACTGCCCTAGTCAT 59.781 57.895 0.00 0.00 41.12 3.06
405 406 2.656646 CGCACACTGCCCTAGTCA 59.343 61.111 0.00 0.00 41.12 3.41
406 407 2.125512 CCGCACACTGCCCTAGTC 60.126 66.667 0.00 0.00 41.12 2.59
407 408 3.706373 CCCGCACACTGCCCTAGT 61.706 66.667 0.00 0.00 41.12 2.57
413 414 3.766496 AAAAACGCCCGCACACTGC 62.766 57.895 0.00 0.00 40.69 4.40
414 415 2.411290 AAAAACGCCCGCACACTG 59.589 55.556 0.00 0.00 0.00 3.66
429 430 6.238814 CGCCAAAGTCCTCTTAAACCTAAAAA 60.239 38.462 0.00 0.00 33.09 1.94
430 431 5.239963 CGCCAAAGTCCTCTTAAACCTAAAA 59.760 40.000 0.00 0.00 33.09 1.52
431 432 4.758165 CGCCAAAGTCCTCTTAAACCTAAA 59.242 41.667 0.00 0.00 33.09 1.85
432 433 4.320870 CGCCAAAGTCCTCTTAAACCTAA 58.679 43.478 0.00 0.00 33.09 2.69
433 434 3.307199 CCGCCAAAGTCCTCTTAAACCTA 60.307 47.826 0.00 0.00 33.09 3.08
434 435 2.552373 CCGCCAAAGTCCTCTTAAACCT 60.552 50.000 0.00 0.00 33.09 3.50
435 436 1.810755 CCGCCAAAGTCCTCTTAAACC 59.189 52.381 0.00 0.00 33.09 3.27
436 437 1.810755 CCCGCCAAAGTCCTCTTAAAC 59.189 52.381 0.00 0.00 33.09 2.01
437 438 1.884928 GCCCGCCAAAGTCCTCTTAAA 60.885 52.381 0.00 0.00 33.09 1.52
438 439 0.322187 GCCCGCCAAAGTCCTCTTAA 60.322 55.000 0.00 0.00 33.09 1.85
439 440 1.298667 GCCCGCCAAAGTCCTCTTA 59.701 57.895 0.00 0.00 33.09 2.10
440 441 2.034221 GCCCGCCAAAGTCCTCTT 59.966 61.111 0.00 0.00 35.14 2.85
441 442 4.394712 CGCCCGCCAAAGTCCTCT 62.395 66.667 0.00 0.00 0.00 3.69
442 443 4.699522 ACGCCCGCCAAAGTCCTC 62.700 66.667 0.00 0.00 0.00 3.71
443 444 4.265056 AACGCCCGCCAAAGTCCT 62.265 61.111 0.00 0.00 0.00 3.85
444 445 4.038080 CAACGCCCGCCAAAGTCC 62.038 66.667 0.00 0.00 0.00 3.85
445 446 2.975799 TCAACGCCCGCCAAAGTC 60.976 61.111 0.00 0.00 0.00 3.01
446 447 3.284449 GTCAACGCCCGCCAAAGT 61.284 61.111 0.00 0.00 0.00 2.66
447 448 4.038080 GGTCAACGCCCGCCAAAG 62.038 66.667 0.00 0.00 0.00 2.77
455 456 2.588856 ATAAGAGGCCGGTCAACGCC 62.589 60.000 9.71 0.00 42.52 5.68
456 457 1.153429 ATAAGAGGCCGGTCAACGC 60.153 57.895 9.71 0.00 42.52 4.84
457 458 0.108329 ACATAAGAGGCCGGTCAACG 60.108 55.000 9.71 0.00 43.80 4.10
458 459 2.109425 AACATAAGAGGCCGGTCAAC 57.891 50.000 9.71 1.10 0.00 3.18
459 460 2.224670 ACAAACATAAGAGGCCGGTCAA 60.225 45.455 9.71 0.00 0.00 3.18
460 461 1.349688 ACAAACATAAGAGGCCGGTCA 59.650 47.619 9.71 0.00 0.00 4.02
461 462 2.109425 ACAAACATAAGAGGCCGGTC 57.891 50.000 0.00 0.00 0.00 4.79
462 463 3.926058 ATACAAACATAAGAGGCCGGT 57.074 42.857 1.90 0.00 0.00 5.28
463 464 6.877611 AAATATACAAACATAAGAGGCCGG 57.122 37.500 0.00 0.00 0.00 6.13
464 465 8.621286 AGAAAAATATACAAACATAAGAGGCCG 58.379 33.333 0.00 0.00 0.00 6.13
482 483 9.291664 CGTGGCCGAAATAAATTTAGAAAAATA 57.708 29.630 3.94 0.00 33.11 1.40
483 484 7.201487 GCGTGGCCGAAATAAATTTAGAAAAAT 60.201 33.333 3.94 0.00 34.73 1.82
484 485 6.089685 GCGTGGCCGAAATAAATTTAGAAAAA 59.910 34.615 3.94 0.00 35.63 1.94
485 486 5.573669 GCGTGGCCGAAATAAATTTAGAAAA 59.426 36.000 3.94 0.00 35.63 2.29
486 487 5.096849 GCGTGGCCGAAATAAATTTAGAAA 58.903 37.500 3.94 0.00 35.63 2.52
487 488 4.664188 GCGTGGCCGAAATAAATTTAGAA 58.336 39.130 3.94 0.00 35.63 2.10
488 489 3.242478 CGCGTGGCCGAAATAAATTTAGA 60.242 43.478 0.00 0.00 35.63 2.10
489 490 3.033185 CGCGTGGCCGAAATAAATTTAG 58.967 45.455 0.00 0.00 35.63 1.85
490 491 2.223294 CCGCGTGGCCGAAATAAATTTA 60.223 45.455 0.00 0.00 35.63 1.40
491 492 1.468395 CCGCGTGGCCGAAATAAATTT 60.468 47.619 0.00 0.00 35.63 1.82
492 493 0.099791 CCGCGTGGCCGAAATAAATT 59.900 50.000 0.00 0.00 35.63 1.82
493 494 1.720694 CCCGCGTGGCCGAAATAAAT 61.721 55.000 10.27 0.00 35.63 1.40
494 495 2.400158 CCCGCGTGGCCGAAATAAA 61.400 57.895 10.27 0.00 35.63 1.40
495 496 2.820479 CCCGCGTGGCCGAAATAA 60.820 61.111 10.27 0.00 35.63 1.40
496 497 4.085204 ACCCGCGTGGCCGAAATA 62.085 61.111 10.27 0.00 37.83 1.40
502 503 3.551887 CTTTTTGACCCGCGTGGCC 62.552 63.158 10.27 0.00 37.83 5.36
503 504 2.050442 CTTTTTGACCCGCGTGGC 60.050 61.111 10.27 0.00 37.83 5.01
504 505 2.642700 CCTTTTTGACCCGCGTGG 59.357 61.111 8.42 8.42 41.37 4.94
505 506 0.885596 TACCCTTTTTGACCCGCGTG 60.886 55.000 4.92 0.00 0.00 5.34
506 507 0.037160 ATACCCTTTTTGACCCGCGT 59.963 50.000 4.92 0.00 0.00 6.01
507 508 0.450184 CATACCCTTTTTGACCCGCG 59.550 55.000 0.00 0.00 0.00 6.46
508 509 0.172578 GCATACCCTTTTTGACCCGC 59.827 55.000 0.00 0.00 0.00 6.13
509 510 0.815095 GGCATACCCTTTTTGACCCG 59.185 55.000 0.00 0.00 0.00 5.28
510 511 2.231716 AGGCATACCCTTTTTGACCC 57.768 50.000 0.00 0.00 43.06 4.46
520 521 3.191182 CCCAACAGAAGGCATACCC 57.809 57.895 0.00 0.00 36.11 3.69
527 528 1.151450 AGGTGTGCCCAACAGAAGG 59.849 57.895 0.00 0.00 40.26 3.46
528 529 1.799258 GCAGGTGTGCCCAACAGAAG 61.799 60.000 0.00 0.00 44.72 2.85
529 530 1.827789 GCAGGTGTGCCCAACAGAA 60.828 57.895 0.00 0.00 44.72 3.02
530 531 2.203337 GCAGGTGTGCCCAACAGA 60.203 61.111 0.00 0.00 44.72 3.41
539 540 1.826054 TTTTGGGTCGGCAGGTGTG 60.826 57.895 0.00 0.00 0.00 3.82
540 541 1.826487 GTTTTGGGTCGGCAGGTGT 60.826 57.895 0.00 0.00 0.00 4.16
541 542 2.903547 CGTTTTGGGTCGGCAGGTG 61.904 63.158 0.00 0.00 0.00 4.00
542 543 2.593436 CGTTTTGGGTCGGCAGGT 60.593 61.111 0.00 0.00 0.00 4.00
543 544 1.448922 TTTCGTTTTGGGTCGGCAGG 61.449 55.000 0.00 0.00 0.00 4.85
544 545 0.382515 TTTTCGTTTTGGGTCGGCAG 59.617 50.000 0.00 0.00 0.00 4.85
545 546 0.382515 CTTTTCGTTTTGGGTCGGCA 59.617 50.000 0.00 0.00 0.00 5.69
546 547 0.937699 GCTTTTCGTTTTGGGTCGGC 60.938 55.000 0.00 0.00 0.00 5.54
547 548 0.659123 CGCTTTTCGTTTTGGGTCGG 60.659 55.000 0.00 0.00 0.00 4.79
548 549 0.659123 CCGCTTTTCGTTTTGGGTCG 60.659 55.000 0.00 0.00 36.19 4.79
549 550 0.664224 TCCGCTTTTCGTTTTGGGTC 59.336 50.000 0.00 0.00 36.19 4.46
550 551 1.000717 CATCCGCTTTTCGTTTTGGGT 60.001 47.619 0.00 0.00 36.19 4.51
551 552 1.696988 CATCCGCTTTTCGTTTTGGG 58.303 50.000 0.00 0.00 36.19 4.12
552 553 1.059942 GCATCCGCTTTTCGTTTTGG 58.940 50.000 0.00 0.00 36.19 3.28
553 554 0.702383 CGCATCCGCTTTTCGTTTTG 59.298 50.000 0.00 0.00 36.19 2.44
554 555 3.086161 CGCATCCGCTTTTCGTTTT 57.914 47.368 0.00 0.00 36.19 2.43
555 556 4.838959 CGCATCCGCTTTTCGTTT 57.161 50.000 0.00 0.00 36.19 3.60
572 573 4.492160 TCGATCAGGCGGACGTGC 62.492 66.667 0.00 0.00 0.00 5.34
573 574 2.579787 GTCGATCAGGCGGACGTG 60.580 66.667 0.00 0.00 0.00 4.49
574 575 3.823330 GGTCGATCAGGCGGACGT 61.823 66.667 0.00 0.00 0.00 4.34
575 576 4.570663 GGGTCGATCAGGCGGACG 62.571 72.222 0.00 0.00 0.00 4.79
576 577 2.515996 TTTGGGTCGATCAGGCGGAC 62.516 60.000 0.00 0.00 0.00 4.79
577 578 2.287274 TTTGGGTCGATCAGGCGGA 61.287 57.895 0.00 0.00 0.00 5.54
578 579 2.106683 GTTTGGGTCGATCAGGCGG 61.107 63.158 0.00 0.00 0.00 6.13
579 580 1.361668 CTGTTTGGGTCGATCAGGCG 61.362 60.000 0.00 0.00 0.00 5.52
580 581 0.036388 TCTGTTTGGGTCGATCAGGC 60.036 55.000 0.00 0.00 0.00 4.85
581 582 1.001974 TGTCTGTTTGGGTCGATCAGG 59.998 52.381 0.00 0.00 0.00 3.86
582 583 2.455674 TGTCTGTTTGGGTCGATCAG 57.544 50.000 0.00 0.00 0.00 2.90
583 584 2.920724 TTGTCTGTTTGGGTCGATCA 57.079 45.000 0.00 0.00 0.00 2.92
584 585 2.095718 GCTTTGTCTGTTTGGGTCGATC 60.096 50.000 0.00 0.00 0.00 3.69
585 586 1.880027 GCTTTGTCTGTTTGGGTCGAT 59.120 47.619 0.00 0.00 0.00 3.59
586 587 1.305201 GCTTTGTCTGTTTGGGTCGA 58.695 50.000 0.00 0.00 0.00 4.20
587 588 0.041312 CGCTTTGTCTGTTTGGGTCG 60.041 55.000 0.00 0.00 0.00 4.79
588 589 1.021968 ACGCTTTGTCTGTTTGGGTC 58.978 50.000 0.00 0.00 0.00 4.46
589 590 0.738389 CACGCTTTGTCTGTTTGGGT 59.262 50.000 0.00 0.00 0.00 4.51
590 591 0.594796 GCACGCTTTGTCTGTTTGGG 60.595 55.000 0.00 0.00 0.00 4.12
591 592 0.929824 CGCACGCTTTGTCTGTTTGG 60.930 55.000 0.00 0.00 0.00 3.28
592 593 0.248054 ACGCACGCTTTGTCTGTTTG 60.248 50.000 0.00 0.00 0.00 2.93
593 594 0.027586 GACGCACGCTTTGTCTGTTT 59.972 50.000 0.00 0.00 0.00 2.83
594 595 1.641677 GACGCACGCTTTGTCTGTT 59.358 52.632 0.00 0.00 0.00 3.16
595 596 2.244651 GGACGCACGCTTTGTCTGT 61.245 57.895 0.00 0.00 33.21 3.41
596 597 2.551270 GGACGCACGCTTTGTCTG 59.449 61.111 0.00 0.00 33.21 3.51
597 598 3.036084 CGGACGCACGCTTTGTCT 61.036 61.111 0.00 0.00 33.21 3.41
598 599 2.369477 AAACGGACGCACGCTTTGTC 62.369 55.000 0.00 0.00 37.37 3.18
599 600 2.466140 AAACGGACGCACGCTTTGT 61.466 52.632 0.00 0.00 37.37 2.83
600 601 2.003443 CAAACGGACGCACGCTTTG 61.003 57.895 0.00 6.24 37.37 2.77
601 602 2.326550 CAAACGGACGCACGCTTT 59.673 55.556 0.00 0.00 37.37 3.51
602 603 3.645975 CCAAACGGACGCACGCTT 61.646 61.111 0.00 0.00 37.37 4.68
605 606 3.708734 GACCCAAACGGACGCACG 61.709 66.667 0.00 0.00 40.31 5.34
606 607 3.708734 CGACCCAAACGGACGCAC 61.709 66.667 0.00 0.00 42.69 5.34
620 621 3.047877 CAACTCCAACCGGGCGAC 61.048 66.667 6.32 0.00 36.21 5.19
623 624 3.056328 GAGCAACTCCAACCGGGC 61.056 66.667 6.32 0.00 36.21 6.13
624 625 1.672356 CAGAGCAACTCCAACCGGG 60.672 63.158 6.32 0.00 38.37 5.73
625 626 0.671781 CTCAGAGCAACTCCAACCGG 60.672 60.000 0.00 0.00 0.00 5.28
626 627 0.034059 ACTCAGAGCAACTCCAACCG 59.966 55.000 0.00 0.00 0.00 4.44
627 628 3.526534 GATACTCAGAGCAACTCCAACC 58.473 50.000 0.00 0.00 0.00 3.77
628 629 3.526534 GGATACTCAGAGCAACTCCAAC 58.473 50.000 0.00 0.00 0.00 3.77
629 630 2.501723 GGGATACTCAGAGCAACTCCAA 59.498 50.000 0.00 0.00 0.00 3.53
630 631 2.111384 GGGATACTCAGAGCAACTCCA 58.889 52.381 0.00 0.00 0.00 3.86
631 632 2.111384 TGGGATACTCAGAGCAACTCC 58.889 52.381 0.00 0.00 0.00 3.85
632 633 3.386078 TCATGGGATACTCAGAGCAACTC 59.614 47.826 0.00 0.00 0.00 3.01
633 634 3.378512 TCATGGGATACTCAGAGCAACT 58.621 45.455 0.00 0.00 0.00 3.16
634 635 3.827008 TCATGGGATACTCAGAGCAAC 57.173 47.619 0.00 0.00 0.00 4.17
635 636 4.033009 TCTTCATGGGATACTCAGAGCAA 58.967 43.478 0.00 0.00 0.00 3.91
636 637 3.386078 GTCTTCATGGGATACTCAGAGCA 59.614 47.826 0.00 0.00 0.00 4.26
637 638 3.244044 GGTCTTCATGGGATACTCAGAGC 60.244 52.174 0.00 0.00 0.00 4.09
638 639 4.222336 AGGTCTTCATGGGATACTCAGAG 58.778 47.826 0.00 0.00 0.00 3.35
639 640 4.271807 AGGTCTTCATGGGATACTCAGA 57.728 45.455 0.00 0.00 0.00 3.27
640 641 4.282195 GGTAGGTCTTCATGGGATACTCAG 59.718 50.000 0.00 0.00 0.00 3.35
641 642 4.223953 GGTAGGTCTTCATGGGATACTCA 58.776 47.826 0.00 0.00 0.00 3.41
642 643 4.039366 GTGGTAGGTCTTCATGGGATACTC 59.961 50.000 0.00 0.00 0.00 2.59
724 732 2.666619 GCATGCAAGGACAAGAAGTTCG 60.667 50.000 14.21 0.00 0.00 3.95
754 762 4.263550 TGTGCAAAACTATAACTAGCCCCA 60.264 41.667 0.00 0.00 0.00 4.96
768 776 1.007387 CCGAGGCCTTGTGCAAAAC 60.007 57.895 19.14 0.00 43.89 2.43
867 4136 2.163815 GGATGAGAACGAGACGAAGGAA 59.836 50.000 0.00 0.00 0.00 3.36
962 4231 1.152963 GAGTGGGCTGTGGTGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
973 4242 0.750182 AGCTAGAGTCGAGAGTGGGC 60.750 60.000 4.21 0.00 0.00 5.36
1227 4508 2.925170 AAGGTGCCGAGCCAGAGT 60.925 61.111 0.00 0.00 0.00 3.24
1931 5900 7.628234 TGCCAATATATTTGGTTCAATTGGTT 58.372 30.769 5.42 0.00 43.35 3.67
1932 5901 7.192852 TGCCAATATATTTGGTTCAATTGGT 57.807 32.000 5.42 0.00 43.35 3.67
1933 5902 7.551974 TGTTGCCAATATATTTGGTTCAATTGG 59.448 33.333 5.42 7.39 43.96 3.16
1934 5903 8.489990 TGTTGCCAATATATTTGGTTCAATTG 57.510 30.769 14.31 0.00 41.53 2.32
1935 5904 8.538701 TCTGTTGCCAATATATTTGGTTCAATT 58.461 29.630 14.31 0.00 41.53 2.32
1936 5905 8.076910 TCTGTTGCCAATATATTTGGTTCAAT 57.923 30.769 14.31 0.00 41.53 2.57
1937 5906 7.473735 TCTGTTGCCAATATATTTGGTTCAA 57.526 32.000 14.31 9.94 41.53 2.69
1938 5907 7.473735 TTCTGTTGCCAATATATTTGGTTCA 57.526 32.000 14.31 11.03 41.53 3.18
1939 5908 7.277760 GGTTTCTGTTGCCAATATATTTGGTTC 59.722 37.037 14.31 8.43 41.53 3.62
1950 5919 1.070601 GCCTTGGTTTCTGTTGCCAAT 59.929 47.619 0.00 0.00 40.91 3.16
1970 5939 4.976116 GTCCTTTCATTTGTCGTTTCCTTG 59.024 41.667 0.00 0.00 0.00 3.61
2064 6374 7.265673 AGTGCTAGTACAACAAGTATACCATG 58.734 38.462 13.75 2.00 34.67 3.66
2190 6500 2.302157 GGGACGGAGGGAGTATTATTGG 59.698 54.545 0.00 0.00 0.00 3.16
2224 6534 1.476891 GATGCACACCTAGACGAAGGA 59.523 52.381 9.64 0.00 39.15 3.36
2230 6540 0.249073 ATCGCGATGCACACCTAGAC 60.249 55.000 23.04 0.00 0.00 2.59
2236 6546 1.349627 CCTTGATCGCGATGCACAC 59.650 57.895 29.09 12.28 0.00 3.82
2249 6578 0.323360 CATTTTCCCCTCCGCCTTGA 60.323 55.000 0.00 0.00 0.00 3.02
2254 6583 0.541863 TCTCTCATTTTCCCCTCCGC 59.458 55.000 0.00 0.00 0.00 5.54
2260 6589 9.764363 AAAAACATTAAGTTCTCTCATTTTCCC 57.236 29.630 0.00 0.00 40.26 3.97
2347 6679 3.921630 TCGTGCATGCTTTCAATGATTTG 59.078 39.130 20.33 0.00 0.00 2.32
2350 6682 2.159338 GGTCGTGCATGCTTTCAATGAT 60.159 45.455 20.33 0.00 0.00 2.45
2356 6688 1.210155 GTGGGTCGTGCATGCTTTC 59.790 57.895 20.33 8.51 0.00 2.62
2367 6699 3.543680 ACCAATAAGAGATGTGGGTCG 57.456 47.619 0.00 0.00 35.32 4.79
2376 6708 7.107639 TCGTGACATATCAACCAATAAGAGA 57.892 36.000 0.00 0.00 36.31 3.10
2406 6738 2.366590 ACGTTAACTCCCTCCTCGTTTT 59.633 45.455 3.71 0.00 0.00 2.43
2429 6761 0.938713 TCCAAAACACTTACGCACGG 59.061 50.000 0.00 0.00 0.00 4.94
2485 6818 3.639094 ACAAAGATGAGATACTCCCTCCG 59.361 47.826 0.00 0.00 0.00 4.63
2528 6861 8.296713 CCAAAATAAGTGTTGCAACTGTAGTAT 58.703 33.333 28.61 15.72 0.00 2.12
2545 6878 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.