Multiple sequence alignment - TraesCS5D01G317300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G317300 chr5D 100.000 2938 0 0 1 2938 410608218 410605281 0.000000e+00 5426.0
1 TraesCS5D01G317300 chr5D 83.361 1214 112 41 958 2126 410638366 410637198 0.000000e+00 1040.0
2 TraesCS5D01G317300 chr5D 83.520 892 79 29 1073 1937 410874226 410873376 0.000000e+00 771.0
3 TraesCS5D01G317300 chr5D 94.569 313 16 1 157 468 508581357 508581669 1.580000e-132 483.0
4 TraesCS5D01G317300 chr5D 89.636 357 36 1 160 515 544784751 544785107 1.240000e-123 453.0
5 TraesCS5D01G317300 chr5D 82.738 168 24 5 1599 1765 410620974 410621137 8.490000e-31 145.0
6 TraesCS5D01G317300 chr5A 93.996 1549 44 22 534 2050 522125154 522123623 0.000000e+00 2300.0
7 TraesCS5D01G317300 chr5A 84.801 1079 101 33 1078 2126 522357654 522356609 0.000000e+00 1026.0
8 TraesCS5D01G317300 chr5A 82.735 892 85 31 1073 1936 522868831 522867981 0.000000e+00 730.0
9 TraesCS5D01G317300 chr5A 83.306 611 52 21 2266 2856 522113693 522113113 4.340000e-143 518.0
10 TraesCS5D01G317300 chr5A 80.992 242 22 10 2043 2279 522114219 522113997 1.400000e-38 171.0
11 TraesCS5D01G317300 chr5B 95.824 886 26 3 1044 1929 492820222 492819348 0.000000e+00 1421.0
12 TraesCS5D01G317300 chr5B 82.420 1223 119 44 958 2126 493125524 493124344 0.000000e+00 979.0
13 TraesCS5D01G317300 chr5B 92.872 491 19 7 534 1010 492820838 492820350 0.000000e+00 699.0
14 TraesCS5D01G317300 chr5B 84.979 719 58 16 1073 1781 493286629 493285951 0.000000e+00 684.0
15 TraesCS5D01G317300 chr5B 88.750 560 43 12 1960 2513 492818914 492818369 0.000000e+00 667.0
16 TraesCS5D01G317300 chr5B 91.395 337 28 1 178 513 677810310 677810646 7.420000e-126 460.0
17 TraesCS5D01G317300 chr5B 92.727 275 11 3 2500 2771 492818354 492818086 3.550000e-104 388.0
18 TraesCS5D01G317300 chr5B 81.365 381 48 10 1152 1528 493086666 493086305 3.700000e-74 289.0
19 TraesCS5D01G317300 chr5B 100.000 29 0 0 1909 1937 492819348 492819320 1.000000e-03 54.7
20 TraesCS5D01G317300 chr2B 92.500 360 26 1 156 515 779848086 779847728 5.610000e-142 514.0
21 TraesCS5D01G317300 chr2B 90.833 360 30 3 156 515 40774 41130 2.050000e-131 479.0
22 TraesCS5D01G317300 chr4B 89.356 357 36 2 160 515 127093133 127093488 5.780000e-122 448.0
23 TraesCS5D01G317300 chr4B 88.493 365 41 1 154 518 16215402 16215765 9.670000e-120 440.0
24 TraesCS5D01G317300 chr4D 88.251 366 40 3 157 521 6688829 6689192 4.500000e-118 435.0
25 TraesCS5D01G317300 chr1B 86.579 380 50 1 160 538 659568030 659567651 4.530000e-113 418.0
26 TraesCS5D01G317300 chr1B 78.413 630 88 25 1138 1752 562433800 562433204 1.660000e-97 366.0
27 TraesCS5D01G317300 chr7D 75.601 291 49 11 1134 1423 27453185 27453454 1.110000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G317300 chr5D 410605281 410608218 2937 True 5426.00 5426 100.0000 1 2938 1 chr5D.!!$R1 2937
1 TraesCS5D01G317300 chr5D 410637198 410638366 1168 True 1040.00 1040 83.3610 958 2126 1 chr5D.!!$R2 1168
2 TraesCS5D01G317300 chr5D 410873376 410874226 850 True 771.00 771 83.5200 1073 1937 1 chr5D.!!$R3 864
3 TraesCS5D01G317300 chr5A 522123623 522125154 1531 True 2300.00 2300 93.9960 534 2050 1 chr5A.!!$R1 1516
4 TraesCS5D01G317300 chr5A 522356609 522357654 1045 True 1026.00 1026 84.8010 1078 2126 1 chr5A.!!$R2 1048
5 TraesCS5D01G317300 chr5A 522867981 522868831 850 True 730.00 730 82.7350 1073 1936 1 chr5A.!!$R3 863
6 TraesCS5D01G317300 chr5A 522113113 522114219 1106 True 344.50 518 82.1490 2043 2856 2 chr5A.!!$R4 813
7 TraesCS5D01G317300 chr5B 493124344 493125524 1180 True 979.00 979 82.4200 958 2126 1 chr5B.!!$R2 1168
8 TraesCS5D01G317300 chr5B 493285951 493286629 678 True 684.00 684 84.9790 1073 1781 1 chr5B.!!$R3 708
9 TraesCS5D01G317300 chr5B 492818086 492820838 2752 True 645.94 1421 94.0346 534 2771 5 chr5B.!!$R4 2237
10 TraesCS5D01G317300 chr1B 562433204 562433800 596 True 366.00 366 78.4130 1138 1752 1 chr1B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.035056 CATCTTCCCAGTCACACCCC 60.035 60.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2597 1.135373 CGAGCTGTGTCGTCCATTACT 60.135 52.381 0.0 0.0 35.14 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.637663 GAGGAGAGGGGGAGGATG 57.362 66.667 0.00 0.00 0.00 3.51
18 19 1.942271 GAGGAGAGGGGGAGGATGA 59.058 63.158 0.00 0.00 0.00 2.92
19 20 0.266152 GAGGAGAGGGGGAGGATGAA 59.734 60.000 0.00 0.00 0.00 2.57
20 21 0.267356 AGGAGAGGGGGAGGATGAAG 59.733 60.000 0.00 0.00 0.00 3.02
21 22 0.266152 GGAGAGGGGGAGGATGAAGA 59.734 60.000 0.00 0.00 0.00 2.87
22 23 1.715785 GAGAGGGGGAGGATGAAGAG 58.284 60.000 0.00 0.00 0.00 2.85
23 24 0.267356 AGAGGGGGAGGATGAAGAGG 59.733 60.000 0.00 0.00 0.00 3.69
24 25 0.266152 GAGGGGGAGGATGAAGAGGA 59.734 60.000 0.00 0.00 0.00 3.71
25 26 0.725133 AGGGGGAGGATGAAGAGGAA 59.275 55.000 0.00 0.00 0.00 3.36
26 27 1.135960 GGGGGAGGATGAAGAGGAAG 58.864 60.000 0.00 0.00 0.00 3.46
27 28 1.344496 GGGGGAGGATGAAGAGGAAGA 60.344 57.143 0.00 0.00 0.00 2.87
28 29 2.698653 GGGGGAGGATGAAGAGGAAGAT 60.699 54.545 0.00 0.00 0.00 2.40
29 30 2.371510 GGGGAGGATGAAGAGGAAGATG 59.628 54.545 0.00 0.00 0.00 2.90
30 31 3.044894 GGGAGGATGAAGAGGAAGATGT 58.955 50.000 0.00 0.00 0.00 3.06
31 32 3.070878 GGGAGGATGAAGAGGAAGATGTC 59.929 52.174 0.00 0.00 0.00 3.06
32 33 3.708631 GGAGGATGAAGAGGAAGATGTCA 59.291 47.826 0.00 0.00 0.00 3.58
33 34 4.202243 GGAGGATGAAGAGGAAGATGTCAG 60.202 50.000 0.00 0.00 0.00 3.51
34 35 4.360889 AGGATGAAGAGGAAGATGTCAGT 58.639 43.478 0.00 0.00 0.00 3.41
35 36 5.523588 AGGATGAAGAGGAAGATGTCAGTA 58.476 41.667 0.00 0.00 0.00 2.74
36 37 5.598005 AGGATGAAGAGGAAGATGTCAGTAG 59.402 44.000 0.00 0.00 0.00 2.57
37 38 5.362430 GGATGAAGAGGAAGATGTCAGTAGT 59.638 44.000 0.00 0.00 0.00 2.73
38 39 5.651387 TGAAGAGGAAGATGTCAGTAGTG 57.349 43.478 0.00 0.00 0.00 2.74
39 40 4.464244 TGAAGAGGAAGATGTCAGTAGTGG 59.536 45.833 0.00 0.00 0.00 4.00
40 41 4.323569 AGAGGAAGATGTCAGTAGTGGA 57.676 45.455 0.00 0.00 0.00 4.02
41 42 4.277476 AGAGGAAGATGTCAGTAGTGGAG 58.723 47.826 0.00 0.00 0.00 3.86
42 43 4.017958 AGAGGAAGATGTCAGTAGTGGAGA 60.018 45.833 0.00 0.00 0.00 3.71
43 44 4.678256 AGGAAGATGTCAGTAGTGGAGAA 58.322 43.478 0.00 0.00 0.00 2.87
44 45 4.709397 AGGAAGATGTCAGTAGTGGAGAAG 59.291 45.833 0.00 0.00 0.00 2.85
45 46 4.464597 GGAAGATGTCAGTAGTGGAGAAGT 59.535 45.833 0.00 0.00 0.00 3.01
46 47 5.046950 GGAAGATGTCAGTAGTGGAGAAGTT 60.047 44.000 0.00 0.00 0.00 2.66
47 48 5.652994 AGATGTCAGTAGTGGAGAAGTTC 57.347 43.478 0.00 0.00 0.00 3.01
48 49 5.329399 AGATGTCAGTAGTGGAGAAGTTCT 58.671 41.667 4.68 4.68 0.00 3.01
49 50 4.855715 TGTCAGTAGTGGAGAAGTTCTG 57.144 45.455 10.90 0.00 0.00 3.02
50 51 3.005897 TGTCAGTAGTGGAGAAGTTCTGC 59.994 47.826 16.85 16.85 35.21 4.26
51 52 2.563179 TCAGTAGTGGAGAAGTTCTGCC 59.437 50.000 20.29 15.69 33.54 4.85
52 53 1.546476 AGTAGTGGAGAAGTTCTGCCG 59.454 52.381 20.29 0.00 33.54 5.69
53 54 0.246635 TAGTGGAGAAGTTCTGCCGC 59.753 55.000 20.29 19.65 33.54 6.53
54 55 2.035442 GTGGAGAAGTTCTGCCGCC 61.035 63.158 20.29 11.05 33.54 6.13
55 56 2.217038 TGGAGAAGTTCTGCCGCCT 61.217 57.895 20.29 0.00 33.54 5.52
56 57 1.003233 GGAGAAGTTCTGCCGCCTT 60.003 57.895 10.90 0.00 0.00 4.35
57 58 1.301677 GGAGAAGTTCTGCCGCCTTG 61.302 60.000 10.90 0.00 0.00 3.61
58 59 0.603975 GAGAAGTTCTGCCGCCTTGT 60.604 55.000 10.90 0.00 0.00 3.16
59 60 0.603975 AGAAGTTCTGCCGCCTTGTC 60.604 55.000 4.10 0.00 0.00 3.18
60 61 1.901650 GAAGTTCTGCCGCCTTGTCG 61.902 60.000 0.00 0.00 0.00 4.35
68 69 4.351938 CGCCTTGTCGGACGGTCA 62.352 66.667 10.76 0.00 33.16 4.02
69 70 2.737376 GCCTTGTCGGACGGTCAC 60.737 66.667 10.76 0.98 33.16 3.67
70 71 3.048602 CCTTGTCGGACGGTCACT 58.951 61.111 10.76 0.00 33.16 3.41
71 72 1.372997 CCTTGTCGGACGGTCACTG 60.373 63.158 10.76 0.00 33.16 3.66
72 73 1.372997 CTTGTCGGACGGTCACTGG 60.373 63.158 10.76 0.00 0.00 4.00
73 74 3.509137 TTGTCGGACGGTCACTGGC 62.509 63.158 10.76 1.32 0.00 4.85
94 95 3.217743 GGCGACGAGGAGTAGGGG 61.218 72.222 0.00 0.00 0.00 4.79
95 96 3.902086 GCGACGAGGAGTAGGGGC 61.902 72.222 0.00 0.00 0.00 5.80
96 97 3.584052 CGACGAGGAGTAGGGGCG 61.584 72.222 0.00 0.00 0.00 6.13
97 98 3.217743 GACGAGGAGTAGGGGCGG 61.218 72.222 0.00 0.00 0.00 6.13
98 99 3.711059 GACGAGGAGTAGGGGCGGA 62.711 68.421 0.00 0.00 0.00 5.54
99 100 2.907917 CGAGGAGTAGGGGCGGAG 60.908 72.222 0.00 0.00 0.00 4.63
100 101 2.522193 GAGGAGTAGGGGCGGAGG 60.522 72.222 0.00 0.00 0.00 4.30
101 102 3.028098 AGGAGTAGGGGCGGAGGA 61.028 66.667 0.00 0.00 0.00 3.71
102 103 2.042230 GGAGTAGGGGCGGAGGAA 60.042 66.667 0.00 0.00 0.00 3.36
103 104 2.134933 GGAGTAGGGGCGGAGGAAG 61.135 68.421 0.00 0.00 0.00 3.46
104 105 1.076192 GAGTAGGGGCGGAGGAAGA 60.076 63.158 0.00 0.00 0.00 2.87
105 106 1.381463 AGTAGGGGCGGAGGAAGAC 60.381 63.158 0.00 0.00 0.00 3.01
106 107 1.381463 GTAGGGGCGGAGGAAGACT 60.381 63.158 0.00 0.00 0.00 3.24
107 108 1.076192 TAGGGGCGGAGGAAGACTC 60.076 63.158 0.00 0.00 45.84 3.36
117 118 1.673920 GAGGAAGACTCGACTGCTAGG 59.326 57.143 0.00 0.00 36.29 3.02
118 119 1.004979 AGGAAGACTCGACTGCTAGGT 59.995 52.381 0.00 0.00 0.00 3.08
119 120 1.819903 GGAAGACTCGACTGCTAGGTT 59.180 52.381 0.00 0.00 0.00 3.50
120 121 2.231721 GGAAGACTCGACTGCTAGGTTT 59.768 50.000 0.00 0.00 0.00 3.27
121 122 3.306156 GGAAGACTCGACTGCTAGGTTTT 60.306 47.826 0.00 0.00 0.00 2.43
122 123 4.082354 GGAAGACTCGACTGCTAGGTTTTA 60.082 45.833 0.00 0.00 0.00 1.52
123 124 5.394333 GGAAGACTCGACTGCTAGGTTTTAT 60.394 44.000 0.00 0.00 0.00 1.40
124 125 5.000012 AGACTCGACTGCTAGGTTTTATG 58.000 43.478 0.00 0.00 0.00 1.90
125 126 4.113354 GACTCGACTGCTAGGTTTTATGG 58.887 47.826 0.00 0.00 0.00 2.74
126 127 3.514309 ACTCGACTGCTAGGTTTTATGGT 59.486 43.478 0.00 0.00 0.00 3.55
127 128 4.113354 CTCGACTGCTAGGTTTTATGGTC 58.887 47.826 0.00 0.00 0.00 4.02
128 129 3.118884 TCGACTGCTAGGTTTTATGGTCC 60.119 47.826 0.00 0.00 0.00 4.46
129 130 3.118738 CGACTGCTAGGTTTTATGGTCCT 60.119 47.826 0.00 0.00 35.60 3.85
130 131 4.443621 GACTGCTAGGTTTTATGGTCCTC 58.556 47.826 0.00 0.00 33.34 3.71
131 132 3.118738 ACTGCTAGGTTTTATGGTCCTCG 60.119 47.826 0.00 0.00 33.34 4.63
132 133 2.835764 TGCTAGGTTTTATGGTCCTCGT 59.164 45.455 0.00 0.00 33.34 4.18
133 134 3.262405 TGCTAGGTTTTATGGTCCTCGTT 59.738 43.478 0.00 0.00 33.34 3.85
134 135 4.259356 GCTAGGTTTTATGGTCCTCGTTT 58.741 43.478 0.00 0.00 33.34 3.60
135 136 4.698780 GCTAGGTTTTATGGTCCTCGTTTT 59.301 41.667 0.00 0.00 33.34 2.43
136 137 5.163784 GCTAGGTTTTATGGTCCTCGTTTTC 60.164 44.000 0.00 0.00 33.34 2.29
137 138 4.721132 AGGTTTTATGGTCCTCGTTTTCA 58.279 39.130 0.00 0.00 0.00 2.69
138 139 4.517832 AGGTTTTATGGTCCTCGTTTTCAC 59.482 41.667 0.00 0.00 0.00 3.18
139 140 4.320714 GGTTTTATGGTCCTCGTTTTCACC 60.321 45.833 0.00 0.00 0.00 4.02
140 141 3.773418 TTATGGTCCTCGTTTTCACCA 57.227 42.857 0.00 0.00 43.10 4.17
141 142 2.879103 ATGGTCCTCGTTTTCACCAT 57.121 45.000 0.00 0.00 43.53 3.55
142 143 2.649531 TGGTCCTCGTTTTCACCATT 57.350 45.000 0.00 0.00 33.83 3.16
143 144 2.938838 TGGTCCTCGTTTTCACCATTT 58.061 42.857 0.00 0.00 33.83 2.32
144 145 3.292460 TGGTCCTCGTTTTCACCATTTT 58.708 40.909 0.00 0.00 33.83 1.82
145 146 3.702045 TGGTCCTCGTTTTCACCATTTTT 59.298 39.130 0.00 0.00 33.83 1.94
146 147 4.048504 GGTCCTCGTTTTCACCATTTTTG 58.951 43.478 0.00 0.00 0.00 2.44
147 148 4.440940 GGTCCTCGTTTTCACCATTTTTGT 60.441 41.667 0.00 0.00 0.00 2.83
148 149 5.106442 GTCCTCGTTTTCACCATTTTTGTT 58.894 37.500 0.00 0.00 0.00 2.83
149 150 5.579119 GTCCTCGTTTTCACCATTTTTGTTT 59.421 36.000 0.00 0.00 0.00 2.83
150 151 5.578727 TCCTCGTTTTCACCATTTTTGTTTG 59.421 36.000 0.00 0.00 0.00 2.93
151 152 5.209944 TCGTTTTCACCATTTTTGTTTGC 57.790 34.783 0.00 0.00 0.00 3.68
152 153 4.932200 TCGTTTTCACCATTTTTGTTTGCT 59.068 33.333 0.00 0.00 0.00 3.91
153 154 6.100004 TCGTTTTCACCATTTTTGTTTGCTA 58.900 32.000 0.00 0.00 0.00 3.49
154 155 6.254589 TCGTTTTCACCATTTTTGTTTGCTAG 59.745 34.615 0.00 0.00 0.00 3.42
155 156 6.509358 CGTTTTCACCATTTTTGTTTGCTAGG 60.509 38.462 0.00 0.00 0.00 3.02
156 157 3.988819 TCACCATTTTTGTTTGCTAGGC 58.011 40.909 0.00 0.00 0.00 3.93
157 158 3.640967 TCACCATTTTTGTTTGCTAGGCT 59.359 39.130 0.00 0.00 0.00 4.58
158 159 4.100808 TCACCATTTTTGTTTGCTAGGCTT 59.899 37.500 0.00 0.00 0.00 4.35
159 160 5.303078 TCACCATTTTTGTTTGCTAGGCTTA 59.697 36.000 0.00 0.00 0.00 3.09
160 161 5.634859 CACCATTTTTGTTTGCTAGGCTTAG 59.365 40.000 0.00 0.00 0.00 2.18
161 162 5.538433 ACCATTTTTGTTTGCTAGGCTTAGA 59.462 36.000 7.11 0.00 0.00 2.10
162 163 6.095377 CCATTTTTGTTTGCTAGGCTTAGAG 58.905 40.000 7.11 0.00 0.00 2.43
163 164 4.766404 TTTTGTTTGCTAGGCTTAGAGC 57.234 40.909 7.11 0.00 41.46 4.09
164 165 3.417069 TTGTTTGCTAGGCTTAGAGCA 57.583 42.857 7.11 6.35 46.74 4.26
177 178 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
193 194 2.843545 TGGAGCCCCCAAGAACAC 59.156 61.111 0.00 0.00 43.29 3.32
194 195 2.035783 GGAGCCCCCAAGAACACC 59.964 66.667 0.00 0.00 34.14 4.16
195 196 2.840753 GGAGCCCCCAAGAACACCA 61.841 63.158 0.00 0.00 34.14 4.17
196 197 1.603739 GAGCCCCCAAGAACACCAC 60.604 63.158 0.00 0.00 0.00 4.16
197 198 2.600470 GCCCCCAAGAACACCACC 60.600 66.667 0.00 0.00 0.00 4.61
198 199 2.282180 CCCCCAAGAACACCACCG 60.282 66.667 0.00 0.00 0.00 4.94
199 200 2.824880 CCCCCAAGAACACCACCGA 61.825 63.158 0.00 0.00 0.00 4.69
200 201 1.149627 CCCCAAGAACACCACCGAA 59.850 57.895 0.00 0.00 0.00 4.30
201 202 1.170290 CCCCAAGAACACCACCGAAC 61.170 60.000 0.00 0.00 0.00 3.95
202 203 1.170290 CCCAAGAACACCACCGAACC 61.170 60.000 0.00 0.00 0.00 3.62
203 204 0.464735 CCAAGAACACCACCGAACCA 60.465 55.000 0.00 0.00 0.00 3.67
204 205 1.384525 CAAGAACACCACCGAACCAA 58.615 50.000 0.00 0.00 0.00 3.67
205 206 1.746220 CAAGAACACCACCGAACCAAA 59.254 47.619 0.00 0.00 0.00 3.28
206 207 2.131776 AGAACACCACCGAACCAAAA 57.868 45.000 0.00 0.00 0.00 2.44
207 208 2.448453 AGAACACCACCGAACCAAAAA 58.552 42.857 0.00 0.00 0.00 1.94
224 225 3.358111 AAAAAGTTGGTGTTTTGGGGG 57.642 42.857 0.00 0.00 0.00 5.40
225 226 1.959710 AAAGTTGGTGTTTTGGGGGT 58.040 45.000 0.00 0.00 0.00 4.95
226 227 1.491668 AAGTTGGTGTTTTGGGGGTC 58.508 50.000 0.00 0.00 0.00 4.46
227 228 0.336737 AGTTGGTGTTTTGGGGGTCA 59.663 50.000 0.00 0.00 0.00 4.02
228 229 1.062505 AGTTGGTGTTTTGGGGGTCAT 60.063 47.619 0.00 0.00 0.00 3.06
229 230 1.343142 GTTGGTGTTTTGGGGGTCATC 59.657 52.381 0.00 0.00 0.00 2.92
230 231 0.178947 TGGTGTTTTGGGGGTCATCC 60.179 55.000 0.00 0.00 0.00 3.51
231 232 1.248101 GGTGTTTTGGGGGTCATCCG 61.248 60.000 0.00 0.00 36.01 4.18
232 233 1.075836 TGTTTTGGGGGTCATCCGG 59.924 57.895 0.00 0.00 36.01 5.14
233 234 2.036572 TTTTGGGGGTCATCCGGC 59.963 61.111 0.00 0.00 36.01 6.13
234 235 3.929334 TTTTGGGGGTCATCCGGCG 62.929 63.158 0.00 0.00 36.01 6.46
237 238 4.104183 GGGGGTCATCCGGCGAAA 62.104 66.667 9.30 0.00 36.01 3.46
238 239 2.192175 GGGGTCATCCGGCGAAAT 59.808 61.111 9.30 0.00 36.01 2.17
239 240 1.448497 GGGGTCATCCGGCGAAATA 59.552 57.895 9.30 0.00 36.01 1.40
240 241 0.036306 GGGGTCATCCGGCGAAATAT 59.964 55.000 9.30 0.00 36.01 1.28
241 242 1.156736 GGGTCATCCGGCGAAATATG 58.843 55.000 9.30 6.81 33.83 1.78
242 243 1.156736 GGTCATCCGGCGAAATATGG 58.843 55.000 9.30 0.00 0.00 2.74
243 244 1.156736 GTCATCCGGCGAAATATGGG 58.843 55.000 9.30 0.00 0.00 4.00
244 245 0.036164 TCATCCGGCGAAATATGGGG 59.964 55.000 9.30 0.00 0.00 4.96
245 246 0.960364 CATCCGGCGAAATATGGGGG 60.960 60.000 9.30 0.00 0.00 5.40
246 247 2.764637 ATCCGGCGAAATATGGGGGC 62.765 60.000 9.30 0.00 0.00 5.80
247 248 2.203280 CGGCGAAATATGGGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
248 249 1.603455 CGGCGAAATATGGGGGCAT 60.603 57.895 0.00 0.00 0.00 4.40
249 250 1.865788 CGGCGAAATATGGGGGCATG 61.866 60.000 0.00 0.00 0.00 4.06
250 251 0.539438 GGCGAAATATGGGGGCATGA 60.539 55.000 0.00 0.00 0.00 3.07
251 252 0.883833 GCGAAATATGGGGGCATGAG 59.116 55.000 0.00 0.00 0.00 2.90
252 253 1.538047 CGAAATATGGGGGCATGAGG 58.462 55.000 0.00 0.00 0.00 3.86
253 254 1.073763 CGAAATATGGGGGCATGAGGA 59.926 52.381 0.00 0.00 0.00 3.71
254 255 2.800250 GAAATATGGGGGCATGAGGAG 58.200 52.381 0.00 0.00 0.00 3.69
255 256 1.078955 AATATGGGGGCATGAGGAGG 58.921 55.000 0.00 0.00 0.00 4.30
256 257 0.848203 ATATGGGGGCATGAGGAGGG 60.848 60.000 0.00 0.00 0.00 4.30
259 260 3.505773 GGGGCATGAGGAGGGCAT 61.506 66.667 0.00 0.00 0.00 4.40
260 261 2.114838 GGGCATGAGGAGGGCATC 59.885 66.667 0.00 0.00 0.00 3.91
261 262 2.459086 GGGCATGAGGAGGGCATCT 61.459 63.158 0.00 0.00 0.00 2.90
262 263 1.535685 GGCATGAGGAGGGCATCTT 59.464 57.895 0.00 0.00 0.00 2.40
263 264 0.536915 GGCATGAGGAGGGCATCTTC 60.537 60.000 4.16 4.16 34.65 2.87
264 265 0.536915 GCATGAGGAGGGCATCTTCC 60.537 60.000 8.84 0.00 33.12 3.46
265 266 0.110104 CATGAGGAGGGCATCTTCCC 59.890 60.000 8.84 0.00 46.93 3.97
271 272 4.645809 GGGCATCTTCCCAGTCAC 57.354 61.111 0.00 0.00 45.82 3.67
272 273 1.685224 GGGCATCTTCCCAGTCACA 59.315 57.895 0.00 0.00 45.82 3.58
273 274 0.678048 GGGCATCTTCCCAGTCACAC 60.678 60.000 0.00 0.00 45.82 3.82
274 275 0.678048 GGCATCTTCCCAGTCACACC 60.678 60.000 0.00 0.00 0.00 4.16
275 276 0.678048 GCATCTTCCCAGTCACACCC 60.678 60.000 0.00 0.00 0.00 4.61
276 277 0.035056 CATCTTCCCAGTCACACCCC 60.035 60.000 0.00 0.00 0.00 4.95
277 278 0.475632 ATCTTCCCAGTCACACCCCA 60.476 55.000 0.00 0.00 0.00 4.96
278 279 1.073199 CTTCCCAGTCACACCCCAC 59.927 63.158 0.00 0.00 0.00 4.61
279 280 2.411765 CTTCCCAGTCACACCCCACC 62.412 65.000 0.00 0.00 0.00 4.61
280 281 3.966543 CCCAGTCACACCCCACCC 61.967 72.222 0.00 0.00 0.00 4.61
281 282 3.966543 CCAGTCACACCCCACCCC 61.967 72.222 0.00 0.00 0.00 4.95
282 283 3.174987 CAGTCACACCCCACCCCA 61.175 66.667 0.00 0.00 0.00 4.96
283 284 2.369015 AGTCACACCCCACCCCAA 60.369 61.111 0.00 0.00 0.00 4.12
284 285 2.115266 GTCACACCCCACCCCAAG 59.885 66.667 0.00 0.00 0.00 3.61
285 286 3.897122 TCACACCCCACCCCAAGC 61.897 66.667 0.00 0.00 0.00 4.01
286 287 4.217210 CACACCCCACCCCAAGCA 62.217 66.667 0.00 0.00 0.00 3.91
287 288 3.434179 ACACCCCACCCCAAGCAA 61.434 61.111 0.00 0.00 0.00 3.91
288 289 2.123077 CACCCCACCCCAAGCAAA 60.123 61.111 0.00 0.00 0.00 3.68
289 290 1.764054 CACCCCACCCCAAGCAAAA 60.764 57.895 0.00 0.00 0.00 2.44
290 291 1.459348 ACCCCACCCCAAGCAAAAG 60.459 57.895 0.00 0.00 0.00 2.27
291 292 1.459348 CCCCACCCCAAGCAAAAGT 60.459 57.895 0.00 0.00 0.00 2.66
292 293 1.053835 CCCCACCCCAAGCAAAAGTT 61.054 55.000 0.00 0.00 0.00 2.66
293 294 0.836606 CCCACCCCAAGCAAAAGTTT 59.163 50.000 0.00 0.00 0.00 2.66
294 295 1.474855 CCCACCCCAAGCAAAAGTTTG 60.475 52.381 0.00 0.00 41.03 2.93
295 296 1.209261 CCACCCCAAGCAAAAGTTTGT 59.791 47.619 5.71 0.00 40.24 2.83
296 297 2.278854 CACCCCAAGCAAAAGTTTGTG 58.721 47.619 5.71 0.00 40.24 3.33
297 298 2.093764 CACCCCAAGCAAAAGTTTGTGA 60.094 45.455 5.71 0.00 40.24 3.58
298 299 2.168313 ACCCCAAGCAAAAGTTTGTGAG 59.832 45.455 5.71 0.00 40.24 3.51
299 300 2.430332 CCCCAAGCAAAAGTTTGTGAGA 59.570 45.455 5.71 0.00 40.24 3.27
300 301 3.118811 CCCCAAGCAAAAGTTTGTGAGAA 60.119 43.478 5.71 0.00 40.24 2.87
301 302 4.502962 CCCAAGCAAAAGTTTGTGAGAAA 58.497 39.130 5.71 0.00 40.24 2.52
302 303 4.934602 CCCAAGCAAAAGTTTGTGAGAAAA 59.065 37.500 5.71 0.00 40.24 2.29
303 304 5.411053 CCCAAGCAAAAGTTTGTGAGAAAAA 59.589 36.000 5.71 0.00 40.24 1.94
304 305 6.093909 CCCAAGCAAAAGTTTGTGAGAAAAAT 59.906 34.615 5.71 0.00 40.24 1.82
305 306 6.962678 CCAAGCAAAAGTTTGTGAGAAAAATG 59.037 34.615 5.71 0.00 40.24 2.32
306 307 7.148440 CCAAGCAAAAGTTTGTGAGAAAAATGA 60.148 33.333 5.71 0.00 40.24 2.57
307 308 8.392612 CAAGCAAAAGTTTGTGAGAAAAATGAT 58.607 29.630 5.71 0.00 40.24 2.45
308 309 8.496707 AGCAAAAGTTTGTGAGAAAAATGATT 57.503 26.923 5.71 0.00 40.24 2.57
309 310 9.598517 AGCAAAAGTTTGTGAGAAAAATGATTA 57.401 25.926 5.71 0.00 40.24 1.75
314 315 9.533253 AAGTTTGTGAGAAAAATGATTAAGTGG 57.467 29.630 0.00 0.00 0.00 4.00
315 316 8.143835 AGTTTGTGAGAAAAATGATTAAGTGGG 58.856 33.333 0.00 0.00 0.00 4.61
316 317 6.024552 TGTGAGAAAAATGATTAAGTGGGC 57.975 37.500 0.00 0.00 0.00 5.36
317 318 5.047377 TGTGAGAAAAATGATTAAGTGGGCC 60.047 40.000 0.00 0.00 0.00 5.80
318 319 5.047377 GTGAGAAAAATGATTAAGTGGGCCA 60.047 40.000 0.00 0.00 0.00 5.36
319 320 5.541868 TGAGAAAAATGATTAAGTGGGCCAA 59.458 36.000 8.40 0.00 0.00 4.52
320 321 6.041423 AGAAAAATGATTAAGTGGGCCAAG 57.959 37.500 8.40 0.00 0.00 3.61
321 322 5.779771 AGAAAAATGATTAAGTGGGCCAAGA 59.220 36.000 8.40 0.00 0.00 3.02
322 323 5.665916 AAAATGATTAAGTGGGCCAAGAG 57.334 39.130 8.40 0.00 0.00 2.85
323 324 4.591321 AATGATTAAGTGGGCCAAGAGA 57.409 40.909 8.40 0.00 0.00 3.10
324 325 4.591321 ATGATTAAGTGGGCCAAGAGAA 57.409 40.909 8.40 0.08 0.00 2.87
325 326 4.380843 TGATTAAGTGGGCCAAGAGAAA 57.619 40.909 8.40 0.00 0.00 2.52
326 327 4.335416 TGATTAAGTGGGCCAAGAGAAAG 58.665 43.478 8.40 0.00 0.00 2.62
327 328 2.879103 TAAGTGGGCCAAGAGAAAGG 57.121 50.000 8.40 0.00 0.00 3.11
328 329 1.149101 AAGTGGGCCAAGAGAAAGGA 58.851 50.000 8.40 0.00 0.00 3.36
329 330 0.402121 AGTGGGCCAAGAGAAAGGAC 59.598 55.000 8.40 0.00 0.00 3.85
330 331 0.110486 GTGGGCCAAGAGAAAGGACA 59.890 55.000 8.40 0.00 33.29 4.02
331 332 0.110486 TGGGCCAAGAGAAAGGACAC 59.890 55.000 2.13 0.00 33.29 3.67
332 333 0.955919 GGGCCAAGAGAAAGGACACG 60.956 60.000 4.39 0.00 33.29 4.49
333 334 0.250338 GGCCAAGAGAAAGGACACGT 60.250 55.000 0.00 0.00 31.39 4.49
334 335 0.868406 GCCAAGAGAAAGGACACGTG 59.132 55.000 15.48 15.48 0.00 4.49
335 336 1.540363 GCCAAGAGAAAGGACACGTGA 60.540 52.381 25.01 0.00 0.00 4.35
336 337 2.408050 CCAAGAGAAAGGACACGTGAG 58.592 52.381 25.01 0.00 0.00 3.51
337 338 2.408050 CAAGAGAAAGGACACGTGAGG 58.592 52.381 25.01 0.00 0.00 3.86
338 339 1.705873 AGAGAAAGGACACGTGAGGT 58.294 50.000 25.01 0.00 0.00 3.85
350 351 2.070861 GTGAGGTGACACGATTCGC 58.929 57.895 5.86 0.83 0.00 4.70
351 352 1.080093 TGAGGTGACACGATTCGCC 60.080 57.895 5.86 11.27 45.25 5.54
353 354 2.126228 GGTGACACGATTCGCCGA 60.126 61.111 5.86 0.00 36.45 5.54
354 355 1.735198 GGTGACACGATTCGCCGAA 60.735 57.895 0.33 0.33 36.45 4.30
355 356 1.286354 GGTGACACGATTCGCCGAAA 61.286 55.000 2.60 0.00 36.45 3.46
356 357 0.179258 GTGACACGATTCGCCGAAAC 60.179 55.000 2.60 0.00 0.00 2.78
357 358 0.319211 TGACACGATTCGCCGAAACT 60.319 50.000 2.60 0.00 0.00 2.66
358 359 0.788391 GACACGATTCGCCGAAACTT 59.212 50.000 2.60 0.00 0.00 2.66
359 360 0.788391 ACACGATTCGCCGAAACTTC 59.212 50.000 2.60 0.00 0.00 3.01
360 361 0.094730 CACGATTCGCCGAAACTTCC 59.905 55.000 2.60 0.00 0.00 3.46
361 362 1.343821 CGATTCGCCGAAACTTCCG 59.656 57.895 2.60 0.00 0.00 4.30
362 363 1.060465 GATTCGCCGAAACTTCCGC 59.940 57.895 2.60 0.00 0.00 5.54
363 364 2.305826 GATTCGCCGAAACTTCCGCC 62.306 60.000 2.60 0.00 0.00 6.13
366 367 3.785499 GCCGAAACTTCCGCCGAC 61.785 66.667 0.00 0.00 0.00 4.79
367 368 3.475774 CCGAAACTTCCGCCGACG 61.476 66.667 0.00 0.00 39.67 5.12
368 369 4.130281 CGAAACTTCCGCCGACGC 62.130 66.667 0.00 0.00 38.22 5.19
369 370 3.785499 GAAACTTCCGCCGACGCC 61.785 66.667 0.00 0.00 38.22 5.68
386 387 4.426313 CCCCAAGAGGCCCCGAAC 62.426 72.222 0.00 0.00 0.00 3.95
387 388 4.778143 CCCAAGAGGCCCCGAACG 62.778 72.222 0.00 0.00 0.00 3.95
398 399 4.084888 CCGAACGCGCTGGGTTTC 62.085 66.667 5.73 0.00 38.76 2.78
399 400 4.424430 CGAACGCGCTGGGTTTCG 62.424 66.667 5.73 9.69 38.76 3.46
400 401 4.736631 GAACGCGCTGGGTTTCGC 62.737 66.667 5.73 0.00 46.98 4.70
406 407 4.699522 GCTGGGTTTCGCCTCGGT 62.700 66.667 0.00 0.00 37.43 4.69
407 408 2.032071 CTGGGTTTCGCCTCGGTT 59.968 61.111 0.00 0.00 37.43 4.44
408 409 1.599797 CTGGGTTTCGCCTCGGTTT 60.600 57.895 0.00 0.00 37.43 3.27
409 410 1.852067 CTGGGTTTCGCCTCGGTTTG 61.852 60.000 0.00 0.00 37.43 2.93
410 411 2.254350 GGTTTCGCCTCGGTTTGC 59.746 61.111 0.00 0.00 0.00 3.68
411 412 2.254350 GTTTCGCCTCGGTTTGCC 59.746 61.111 0.00 0.00 0.00 4.52
421 422 2.882132 GGTTTGCCGGCGCTATTT 59.118 55.556 23.90 0.00 35.36 1.40
422 423 1.226575 GGTTTGCCGGCGCTATTTC 60.227 57.895 23.90 7.45 35.36 2.17
423 424 1.582680 GTTTGCCGGCGCTATTTCG 60.583 57.895 23.90 0.73 35.36 3.46
424 425 1.742140 TTTGCCGGCGCTATTTCGA 60.742 52.632 23.90 0.00 35.36 3.71
425 426 1.973137 TTTGCCGGCGCTATTTCGAC 61.973 55.000 23.90 0.00 35.36 4.20
429 430 3.306634 GGCGCTATTTCGACGTCC 58.693 61.111 10.58 0.00 0.00 4.79
430 431 1.226888 GGCGCTATTTCGACGTCCT 60.227 57.895 10.58 0.00 0.00 3.85
431 432 1.480219 GGCGCTATTTCGACGTCCTG 61.480 60.000 10.58 0.00 0.00 3.86
432 433 0.524816 GCGCTATTTCGACGTCCTGA 60.525 55.000 10.58 0.00 0.00 3.86
433 434 1.467875 CGCTATTTCGACGTCCTGAG 58.532 55.000 10.58 1.78 0.00 3.35
434 435 1.841450 GCTATTTCGACGTCCTGAGG 58.159 55.000 10.58 0.00 0.00 3.86
435 436 1.536284 GCTATTTCGACGTCCTGAGGG 60.536 57.143 10.58 0.00 0.00 4.30
436 437 0.458669 TATTTCGACGTCCTGAGGGC 59.541 55.000 10.58 0.00 0.00 5.19
440 441 4.803426 GACGTCCTGAGGGCGCTG 62.803 72.222 27.24 0.00 36.24 5.18
461 462 3.284449 GCGTGACTGGGCCGTTTT 61.284 61.111 0.00 0.00 0.00 2.43
462 463 2.841160 GCGTGACTGGGCCGTTTTT 61.841 57.895 0.00 0.00 0.00 1.94
463 464 1.281656 CGTGACTGGGCCGTTTTTC 59.718 57.895 0.00 0.00 0.00 2.29
464 465 1.281656 GTGACTGGGCCGTTTTTCG 59.718 57.895 0.00 0.00 39.52 3.46
486 487 3.089788 AAAAACGCCGTCTGAACCT 57.910 47.368 0.00 0.00 0.00 3.50
487 488 2.243602 AAAAACGCCGTCTGAACCTA 57.756 45.000 0.00 0.00 0.00 3.08
488 489 2.243602 AAAACGCCGTCTGAACCTAA 57.756 45.000 0.00 0.00 0.00 2.69
489 490 2.243602 AAACGCCGTCTGAACCTAAA 57.756 45.000 0.00 0.00 0.00 1.85
490 491 2.243602 AACGCCGTCTGAACCTAAAA 57.756 45.000 0.00 0.00 0.00 1.52
491 492 1.505425 ACGCCGTCTGAACCTAAAAC 58.495 50.000 0.00 0.00 0.00 2.43
492 493 0.794473 CGCCGTCTGAACCTAAAACC 59.206 55.000 0.00 0.00 0.00 3.27
493 494 0.794473 GCCGTCTGAACCTAAAACCG 59.206 55.000 0.00 0.00 0.00 4.44
494 495 1.606224 GCCGTCTGAACCTAAAACCGA 60.606 52.381 0.00 0.00 0.00 4.69
495 496 2.334838 CCGTCTGAACCTAAAACCGAG 58.665 52.381 0.00 0.00 0.00 4.63
496 497 1.725164 CGTCTGAACCTAAAACCGAGC 59.275 52.381 0.00 0.00 0.00 5.03
497 498 2.074576 GTCTGAACCTAAAACCGAGCC 58.925 52.381 0.00 0.00 0.00 4.70
498 499 1.975680 TCTGAACCTAAAACCGAGCCT 59.024 47.619 0.00 0.00 0.00 4.58
499 500 3.056322 GTCTGAACCTAAAACCGAGCCTA 60.056 47.826 0.00 0.00 0.00 3.93
500 501 3.579586 TCTGAACCTAAAACCGAGCCTAA 59.420 43.478 0.00 0.00 0.00 2.69
501 502 4.040706 TCTGAACCTAAAACCGAGCCTAAA 59.959 41.667 0.00 0.00 0.00 1.85
502 503 4.716794 TGAACCTAAAACCGAGCCTAAAA 58.283 39.130 0.00 0.00 0.00 1.52
503 504 5.131784 TGAACCTAAAACCGAGCCTAAAAA 58.868 37.500 0.00 0.00 0.00 1.94
504 505 5.239963 TGAACCTAAAACCGAGCCTAAAAAG 59.760 40.000 0.00 0.00 0.00 2.27
505 506 4.077108 ACCTAAAACCGAGCCTAAAAAGG 58.923 43.478 0.00 0.00 0.00 3.11
506 507 4.077108 CCTAAAACCGAGCCTAAAAAGGT 58.923 43.478 0.00 0.00 36.66 3.50
507 508 4.082949 CCTAAAACCGAGCCTAAAAAGGTG 60.083 45.833 0.00 0.00 35.08 4.00
508 509 2.651382 AACCGAGCCTAAAAAGGTGT 57.349 45.000 0.00 0.00 35.08 4.16
509 510 2.180432 ACCGAGCCTAAAAAGGTGTC 57.820 50.000 0.00 0.00 33.37 3.67
510 511 1.271217 ACCGAGCCTAAAAAGGTGTCC 60.271 52.381 0.00 0.00 33.37 4.02
511 512 1.003233 CCGAGCCTAAAAAGGTGTCCT 59.997 52.381 0.00 0.00 33.87 3.85
512 513 2.076863 CGAGCCTAAAAAGGTGTCCTG 58.923 52.381 0.00 0.00 32.13 3.86
513 514 2.437413 GAGCCTAAAAAGGTGTCCTGG 58.563 52.381 0.00 0.00 32.13 4.45
514 515 1.075536 AGCCTAAAAAGGTGTCCTGGG 59.924 52.381 0.00 0.00 32.13 4.45
515 516 1.203013 GCCTAAAAAGGTGTCCTGGGT 60.203 52.381 0.00 0.00 32.13 4.51
516 517 2.514803 CCTAAAAAGGTGTCCTGGGTG 58.485 52.381 0.00 0.00 32.13 4.61
517 518 2.514803 CTAAAAAGGTGTCCTGGGTGG 58.485 52.381 0.00 0.00 32.13 4.61
518 519 0.930726 AAAAAGGTGTCCTGGGTGGA 59.069 50.000 0.00 0.00 43.86 4.02
527 528 3.706373 CTGGGTGGACGGGTGGAG 61.706 72.222 0.00 0.00 0.00 3.86
530 531 4.016706 GGTGGACGGGTGGAGGTG 62.017 72.222 0.00 0.00 0.00 4.00
531 532 4.699522 GTGGACGGGTGGAGGTGC 62.700 72.222 0.00 0.00 0.00 5.01
532 533 4.954118 TGGACGGGTGGAGGTGCT 62.954 66.667 0.00 0.00 0.00 4.40
549 550 6.539103 GGAGGTGCTCTTAACTATTCGATTTT 59.461 38.462 0.00 0.00 0.00 1.82
621 622 6.582636 TGTATCAAGCTAGAAATGTGGTAGG 58.417 40.000 0.00 0.00 0.00 3.18
805 813 9.141400 GTCTTTGATTTAAGTGAGATTAGACGT 57.859 33.333 0.00 0.00 0.00 4.34
914 928 1.202568 TGATAATGGACGCAGCTCCAG 60.203 52.381 15.96 0.00 40.03 3.86
937 951 2.233431 GCACCTTGCCATTGGTTCATTA 59.767 45.455 4.26 0.00 37.42 1.90
955 969 0.321210 TAACATGCGGGTCACTGGTG 60.321 55.000 0.00 0.00 0.00 4.17
1030 1050 3.633573 GCTCACTAGCTCCGAAGTC 57.366 57.895 0.00 0.00 45.85 3.01
1032 1052 0.378962 CTCACTAGCTCCGAAGTCCG 59.621 60.000 0.00 0.00 38.18 4.79
1033 1053 0.035725 TCACTAGCTCCGAAGTCCGA 60.036 55.000 0.00 0.00 41.76 4.55
1125 1254 0.324943 TTGAGGGGCAAGAGTACAGC 59.675 55.000 0.00 0.00 31.55 4.40
1793 1947 4.022413 TGGACGGATTTGGATGTGTAAA 57.978 40.909 0.00 0.00 0.00 2.01
1990 2591 2.495155 TGGACATGGACCAATGACAG 57.505 50.000 10.70 0.00 34.25 3.51
1991 2592 1.984424 TGGACATGGACCAATGACAGA 59.016 47.619 10.70 0.00 34.25 3.41
1992 2593 2.374839 TGGACATGGACCAATGACAGAA 59.625 45.455 10.70 0.00 34.25 3.02
1994 2595 4.019174 GGACATGGACCAATGACAGAAAT 58.981 43.478 0.00 0.00 0.00 2.17
1995 2596 4.463891 GGACATGGACCAATGACAGAAATT 59.536 41.667 0.00 0.00 0.00 1.82
1996 2597 5.652014 GGACATGGACCAATGACAGAAATTA 59.348 40.000 0.00 0.00 0.00 1.40
1997 2598 6.183360 GGACATGGACCAATGACAGAAATTAG 60.183 42.308 0.00 0.00 0.00 1.73
2161 2772 0.389037 GTAACTTCCGTCGGGACCAC 60.389 60.000 12.29 0.00 43.74 4.16
2182 2793 5.444613 CCACGTGTTCATATTCACTTTCTCG 60.445 44.000 15.65 0.00 33.07 4.04
2183 2794 4.091509 ACGTGTTCATATTCACTTTCTCGC 59.908 41.667 0.00 0.00 33.07 5.03
2192 2803 1.199327 TCACTTTCTCGCCTAGACACG 59.801 52.381 0.00 0.00 32.51 4.49
2193 2804 0.109226 ACTTTCTCGCCTAGACACGC 60.109 55.000 0.00 0.00 32.51 5.34
2199 2810 2.103736 GCCTAGACACGCCCGTAC 59.896 66.667 0.00 0.00 0.00 3.67
2200 2811 2.803479 CCTAGACACGCCCGTACC 59.197 66.667 0.00 0.00 0.00 3.34
2201 2812 2.779033 CCTAGACACGCCCGTACCC 61.779 68.421 0.00 0.00 0.00 3.69
2208 2819 2.357275 CGCCCGTACCCGTTTGAA 60.357 61.111 0.00 0.00 0.00 2.69
2224 2835 4.319190 CGTTTGAACGCCAAGTAATTCTGA 60.319 41.667 3.12 0.00 46.06 3.27
2276 3207 7.497909 ACGGAAAAACATACCCTATGACTATTG 59.502 37.037 0.00 0.00 39.45 1.90
2295 3226 8.451908 ACTATTGTGCTAAGTTGAAGAAAACT 57.548 30.769 0.00 0.00 42.21 2.66
2387 3319 3.237628 GCGATGTCTTCTTTTGGCTTTC 58.762 45.455 0.00 0.00 0.00 2.62
2430 3362 0.912486 GATGTAACCTGCTCACCCCT 59.088 55.000 0.00 0.00 0.00 4.79
2457 3389 4.599041 ACCCTGCAGCTGATTTTTGTATA 58.401 39.130 20.43 0.00 0.00 1.47
2521 3483 5.335897 GCTTCTTGATTATTGTGCTGGTTCA 60.336 40.000 0.00 0.00 0.00 3.18
2533 3495 4.202141 TGTGCTGGTTCAAAATTCTGAAGG 60.202 41.667 0.00 0.00 36.01 3.46
2635 3599 9.753674 TTTTGAGGAATAAAACTGTGGAGATAT 57.246 29.630 0.00 0.00 0.00 1.63
2638 3602 8.651389 TGAGGAATAAAACTGTGGAGATATAGG 58.349 37.037 0.00 0.00 0.00 2.57
2639 3603 8.798975 AGGAATAAAACTGTGGAGATATAGGA 57.201 34.615 0.00 0.00 0.00 2.94
2640 3604 8.875168 AGGAATAAAACTGTGGAGATATAGGAG 58.125 37.037 0.00 0.00 0.00 3.69
2665 3629 8.293157 AGTATTACTTTTGCTTGAAGCTCTTTC 58.707 33.333 18.94 0.00 42.97 2.62
2773 3742 9.777297 ATGGTGAGCAAATAGTTTTTGTTTTAT 57.223 25.926 7.71 0.00 0.00 1.40
2774 3743 9.039870 TGGTGAGCAAATAGTTTTTGTTTTATG 57.960 29.630 7.71 0.00 0.00 1.90
2775 3744 8.009409 GGTGAGCAAATAGTTTTTGTTTTATGC 58.991 33.333 7.71 0.00 0.00 3.14
2776 3745 8.547069 GTGAGCAAATAGTTTTTGTTTTATGCA 58.453 29.630 7.71 0.00 32.76 3.96
2778 3747 9.584839 GAGCAAATAGTTTTTGTTTTATGCAAG 57.415 29.630 7.71 0.00 32.76 4.01
2779 3748 9.108284 AGCAAATAGTTTTTGTTTTATGCAAGT 57.892 25.926 7.71 0.00 32.76 3.16
2813 3782 3.817084 TCTCTGACCATGCAACTTTTCTG 59.183 43.478 0.00 0.00 0.00 3.02
2821 3790 5.984926 ACCATGCAACTTTTCTGTTGTTATG 59.015 36.000 8.78 11.87 46.33 1.90
2834 3803 2.127271 TGTTATGGGTGTGCTCATGG 57.873 50.000 0.00 0.00 36.31 3.66
2877 3846 2.859165 TTTGAAAGATCCAGCTCGGT 57.141 45.000 0.00 0.00 35.57 4.69
2878 3847 2.859165 TTGAAAGATCCAGCTCGGTT 57.141 45.000 0.00 0.00 35.57 4.44
2879 3848 2.099141 TGAAAGATCCAGCTCGGTTG 57.901 50.000 0.00 0.00 35.57 3.77
2880 3849 1.339055 TGAAAGATCCAGCTCGGTTGG 60.339 52.381 1.22 1.22 35.19 3.77
2881 3850 0.678048 AAAGATCCAGCTCGGTTGGC 60.678 55.000 2.58 0.00 33.87 4.52
2882 3851 1.841302 AAGATCCAGCTCGGTTGGCA 61.841 55.000 2.58 0.00 33.87 4.92
2883 3852 1.153086 GATCCAGCTCGGTTGGCAT 60.153 57.895 0.00 0.00 33.87 4.40
2884 3853 0.749454 GATCCAGCTCGGTTGGCATT 60.749 55.000 0.00 0.00 33.87 3.56
2885 3854 0.749454 ATCCAGCTCGGTTGGCATTC 60.749 55.000 0.00 0.00 33.87 2.67
2886 3855 1.675310 CCAGCTCGGTTGGCATTCA 60.675 57.895 0.00 0.00 0.00 2.57
2887 3856 1.033746 CCAGCTCGGTTGGCATTCAT 61.034 55.000 0.00 0.00 0.00 2.57
2888 3857 0.813184 CAGCTCGGTTGGCATTCATT 59.187 50.000 0.00 0.00 0.00 2.57
2889 3858 1.098050 AGCTCGGTTGGCATTCATTC 58.902 50.000 0.00 0.00 0.00 2.67
2890 3859 0.810648 GCTCGGTTGGCATTCATTCA 59.189 50.000 0.00 0.00 0.00 2.57
2891 3860 1.406539 GCTCGGTTGGCATTCATTCAT 59.593 47.619 0.00 0.00 0.00 2.57
2892 3861 2.159198 GCTCGGTTGGCATTCATTCATT 60.159 45.455 0.00 0.00 0.00 2.57
2893 3862 3.676873 GCTCGGTTGGCATTCATTCATTT 60.677 43.478 0.00 0.00 0.00 2.32
2894 3863 4.439974 GCTCGGTTGGCATTCATTCATTTA 60.440 41.667 0.00 0.00 0.00 1.40
2895 3864 5.247507 TCGGTTGGCATTCATTCATTTAG 57.752 39.130 0.00 0.00 0.00 1.85
2896 3865 3.798337 CGGTTGGCATTCATTCATTTAGC 59.202 43.478 0.00 0.00 0.00 3.09
2897 3866 4.677514 CGGTTGGCATTCATTCATTTAGCA 60.678 41.667 0.00 0.00 0.00 3.49
2898 3867 4.807304 GGTTGGCATTCATTCATTTAGCAG 59.193 41.667 0.00 0.00 0.00 4.24
2899 3868 5.394443 GGTTGGCATTCATTCATTTAGCAGA 60.394 40.000 0.00 0.00 0.00 4.26
2900 3869 5.509716 TGGCATTCATTCATTTAGCAGAG 57.490 39.130 0.00 0.00 0.00 3.35
2901 3870 5.195185 TGGCATTCATTCATTTAGCAGAGA 58.805 37.500 0.00 0.00 0.00 3.10
2902 3871 5.298527 TGGCATTCATTCATTTAGCAGAGAG 59.701 40.000 0.00 0.00 0.00 3.20
2903 3872 5.530171 GGCATTCATTCATTTAGCAGAGAGA 59.470 40.000 0.00 0.00 0.00 3.10
2904 3873 6.039047 GGCATTCATTCATTTAGCAGAGAGAA 59.961 38.462 0.00 0.00 0.00 2.87
2905 3874 7.133513 GCATTCATTCATTTAGCAGAGAGAAG 58.866 38.462 0.00 0.00 0.00 2.85
2906 3875 7.640852 CATTCATTCATTTAGCAGAGAGAAGG 58.359 38.462 0.00 0.00 0.00 3.46
2907 3876 5.121811 TCATTCATTTAGCAGAGAGAAGGC 58.878 41.667 0.00 0.00 0.00 4.35
2908 3877 3.170791 TCATTTAGCAGAGAGAAGGCG 57.829 47.619 0.00 0.00 0.00 5.52
2909 3878 2.159043 TCATTTAGCAGAGAGAAGGCGG 60.159 50.000 0.00 0.00 0.00 6.13
2910 3879 1.557099 TTTAGCAGAGAGAAGGCGGA 58.443 50.000 0.00 0.00 0.00 5.54
2911 3880 1.557099 TTAGCAGAGAGAAGGCGGAA 58.443 50.000 0.00 0.00 0.00 4.30
2912 3881 1.557099 TAGCAGAGAGAAGGCGGAAA 58.443 50.000 0.00 0.00 0.00 3.13
2913 3882 0.687354 AGCAGAGAGAAGGCGGAAAA 59.313 50.000 0.00 0.00 0.00 2.29
2914 3883 1.072331 AGCAGAGAGAAGGCGGAAAAA 59.928 47.619 0.00 0.00 0.00 1.94
2915 3884 1.197949 GCAGAGAGAAGGCGGAAAAAC 59.802 52.381 0.00 0.00 0.00 2.43
2916 3885 2.494059 CAGAGAGAAGGCGGAAAAACA 58.506 47.619 0.00 0.00 0.00 2.83
2917 3886 2.878406 CAGAGAGAAGGCGGAAAAACAA 59.122 45.455 0.00 0.00 0.00 2.83
2918 3887 3.058639 CAGAGAGAAGGCGGAAAAACAAG 60.059 47.826 0.00 0.00 0.00 3.16
2919 3888 2.879026 GAGAGAAGGCGGAAAAACAAGT 59.121 45.455 0.00 0.00 0.00 3.16
2920 3889 2.618709 AGAGAAGGCGGAAAAACAAGTG 59.381 45.455 0.00 0.00 0.00 3.16
2921 3890 2.357952 GAGAAGGCGGAAAAACAAGTGT 59.642 45.455 0.00 0.00 0.00 3.55
2922 3891 2.758423 AGAAGGCGGAAAAACAAGTGTT 59.242 40.909 0.00 0.00 40.50 3.32
2923 3892 2.577449 AGGCGGAAAAACAAGTGTTG 57.423 45.000 0.00 0.00 38.44 3.33
2924 3893 2.096248 AGGCGGAAAAACAAGTGTTGA 58.904 42.857 0.00 0.00 38.44 3.18
2925 3894 2.693074 AGGCGGAAAAACAAGTGTTGAT 59.307 40.909 0.00 0.00 38.44 2.57
2926 3895 3.049912 GGCGGAAAAACAAGTGTTGATC 58.950 45.455 0.00 0.00 38.44 2.92
2927 3896 3.490078 GGCGGAAAAACAAGTGTTGATCA 60.490 43.478 0.00 0.00 38.44 2.92
2928 3897 4.109050 GCGGAAAAACAAGTGTTGATCAA 58.891 39.130 3.38 3.38 38.44 2.57
2929 3898 4.207019 GCGGAAAAACAAGTGTTGATCAAG 59.793 41.667 8.80 0.00 38.44 3.02
2930 3899 5.339990 CGGAAAAACAAGTGTTGATCAAGT 58.660 37.500 8.80 0.00 38.44 3.16
2931 3900 5.229887 CGGAAAAACAAGTGTTGATCAAGTG 59.770 40.000 8.80 7.51 38.44 3.16
2932 3901 6.329496 GGAAAAACAAGTGTTGATCAAGTGA 58.671 36.000 8.80 0.00 38.44 3.41
2933 3902 6.980397 GGAAAAACAAGTGTTGATCAAGTGAT 59.020 34.615 8.80 0.00 38.44 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.267356 CTTCATCCTCCCCCTCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
2 3 0.266152 TCTTCATCCTCCCCCTCTCC 59.734 60.000 0.00 0.00 0.00 3.71
4 5 0.267356 CCTCTTCATCCTCCCCCTCT 59.733 60.000 0.00 0.00 0.00 3.69
5 6 0.266152 TCCTCTTCATCCTCCCCCTC 59.734 60.000 0.00 0.00 0.00 4.30
6 7 0.725133 TTCCTCTTCATCCTCCCCCT 59.275 55.000 0.00 0.00 0.00 4.79
7 8 1.135960 CTTCCTCTTCATCCTCCCCC 58.864 60.000 0.00 0.00 0.00 5.40
8 9 2.182516 TCTTCCTCTTCATCCTCCCC 57.817 55.000 0.00 0.00 0.00 4.81
9 10 3.044894 ACATCTTCCTCTTCATCCTCCC 58.955 50.000 0.00 0.00 0.00 4.30
10 11 3.708631 TGACATCTTCCTCTTCATCCTCC 59.291 47.826 0.00 0.00 0.00 4.30
11 12 4.405358 ACTGACATCTTCCTCTTCATCCTC 59.595 45.833 0.00 0.00 0.00 3.71
12 13 4.360889 ACTGACATCTTCCTCTTCATCCT 58.639 43.478 0.00 0.00 0.00 3.24
13 14 4.751767 ACTGACATCTTCCTCTTCATCC 57.248 45.455 0.00 0.00 0.00 3.51
14 15 6.272318 CACTACTGACATCTTCCTCTTCATC 58.728 44.000 0.00 0.00 0.00 2.92
15 16 5.128499 CCACTACTGACATCTTCCTCTTCAT 59.872 44.000 0.00 0.00 0.00 2.57
16 17 4.464244 CCACTACTGACATCTTCCTCTTCA 59.536 45.833 0.00 0.00 0.00 3.02
17 18 4.707448 TCCACTACTGACATCTTCCTCTTC 59.293 45.833 0.00 0.00 0.00 2.87
18 19 4.678256 TCCACTACTGACATCTTCCTCTT 58.322 43.478 0.00 0.00 0.00 2.85
19 20 4.017958 TCTCCACTACTGACATCTTCCTCT 60.018 45.833 0.00 0.00 0.00 3.69
20 21 4.274147 TCTCCACTACTGACATCTTCCTC 58.726 47.826 0.00 0.00 0.00 3.71
21 22 4.323569 TCTCCACTACTGACATCTTCCT 57.676 45.455 0.00 0.00 0.00 3.36
22 23 4.464597 ACTTCTCCACTACTGACATCTTCC 59.535 45.833 0.00 0.00 0.00 3.46
23 24 5.652994 ACTTCTCCACTACTGACATCTTC 57.347 43.478 0.00 0.00 0.00 2.87
24 25 5.777732 AGAACTTCTCCACTACTGACATCTT 59.222 40.000 0.00 0.00 0.00 2.40
25 26 5.184864 CAGAACTTCTCCACTACTGACATCT 59.815 44.000 0.00 0.00 0.00 2.90
26 27 5.406649 CAGAACTTCTCCACTACTGACATC 58.593 45.833 0.00 0.00 0.00 3.06
27 28 4.322349 GCAGAACTTCTCCACTACTGACAT 60.322 45.833 0.00 0.00 0.00 3.06
28 29 3.005897 GCAGAACTTCTCCACTACTGACA 59.994 47.826 0.00 0.00 0.00 3.58
29 30 3.580731 GCAGAACTTCTCCACTACTGAC 58.419 50.000 0.00 0.00 0.00 3.51
30 31 2.563179 GGCAGAACTTCTCCACTACTGA 59.437 50.000 0.00 0.00 0.00 3.41
31 32 2.672478 CGGCAGAACTTCTCCACTACTG 60.672 54.545 0.00 0.00 0.00 2.74
32 33 1.546476 CGGCAGAACTTCTCCACTACT 59.454 52.381 0.00 0.00 0.00 2.57
33 34 1.997669 CGGCAGAACTTCTCCACTAC 58.002 55.000 0.00 0.00 0.00 2.73
34 35 0.246635 GCGGCAGAACTTCTCCACTA 59.753 55.000 0.00 0.00 0.00 2.74
35 36 1.004440 GCGGCAGAACTTCTCCACT 60.004 57.895 0.00 0.00 0.00 4.00
36 37 2.035442 GGCGGCAGAACTTCTCCAC 61.035 63.158 3.07 0.00 0.00 4.02
37 38 1.768684 AAGGCGGCAGAACTTCTCCA 61.769 55.000 13.08 0.00 0.00 3.86
38 39 1.003233 AAGGCGGCAGAACTTCTCC 60.003 57.895 13.08 0.00 0.00 3.71
39 40 0.603975 ACAAGGCGGCAGAACTTCTC 60.604 55.000 13.08 0.00 0.00 2.87
40 41 0.603975 GACAAGGCGGCAGAACTTCT 60.604 55.000 13.08 0.00 0.00 2.85
41 42 1.869690 GACAAGGCGGCAGAACTTC 59.130 57.895 13.08 0.00 0.00 3.01
42 43 1.961277 CGACAAGGCGGCAGAACTT 60.961 57.895 13.08 0.00 0.00 2.66
43 44 2.357517 CGACAAGGCGGCAGAACT 60.358 61.111 13.08 0.00 0.00 3.01
44 45 3.423154 CCGACAAGGCGGCAGAAC 61.423 66.667 13.08 0.00 45.38 3.01
51 52 4.351938 TGACCGTCCGACAAGGCG 62.352 66.667 0.00 0.00 40.77 5.52
52 53 2.737376 GTGACCGTCCGACAAGGC 60.737 66.667 0.00 0.00 40.77 4.35
53 54 1.372997 CAGTGACCGTCCGACAAGG 60.373 63.158 0.00 0.00 42.97 3.61
54 55 1.372997 CCAGTGACCGTCCGACAAG 60.373 63.158 0.00 0.00 0.00 3.16
55 56 2.732016 CCAGTGACCGTCCGACAA 59.268 61.111 0.00 0.00 0.00 3.18
56 57 3.986006 GCCAGTGACCGTCCGACA 61.986 66.667 0.00 0.00 0.00 4.35
73 74 3.152937 CTACTCCTCGTCGCCGTCG 62.153 68.421 0.00 0.00 35.01 5.12
74 75 2.708255 CTACTCCTCGTCGCCGTC 59.292 66.667 0.00 0.00 35.01 4.79
75 76 2.823147 CCTACTCCTCGTCGCCGT 60.823 66.667 0.00 0.00 35.01 5.68
76 77 3.584052 CCCTACTCCTCGTCGCCG 61.584 72.222 0.00 0.00 0.00 6.46
77 78 3.217743 CCCCTACTCCTCGTCGCC 61.218 72.222 0.00 0.00 0.00 5.54
78 79 3.902086 GCCCCTACTCCTCGTCGC 61.902 72.222 0.00 0.00 0.00 5.19
79 80 3.584052 CGCCCCTACTCCTCGTCG 61.584 72.222 0.00 0.00 0.00 5.12
80 81 3.217743 CCGCCCCTACTCCTCGTC 61.218 72.222 0.00 0.00 0.00 4.20
81 82 3.717924 CTCCGCCCCTACTCCTCGT 62.718 68.421 0.00 0.00 0.00 4.18
82 83 2.907917 CTCCGCCCCTACTCCTCG 60.908 72.222 0.00 0.00 0.00 4.63
83 84 2.522193 CCTCCGCCCCTACTCCTC 60.522 72.222 0.00 0.00 0.00 3.71
84 85 2.591193 CTTCCTCCGCCCCTACTCCT 62.591 65.000 0.00 0.00 0.00 3.69
85 86 2.042230 TTCCTCCGCCCCTACTCC 60.042 66.667 0.00 0.00 0.00 3.85
86 87 1.076192 TCTTCCTCCGCCCCTACTC 60.076 63.158 0.00 0.00 0.00 2.59
87 88 1.381463 GTCTTCCTCCGCCCCTACT 60.381 63.158 0.00 0.00 0.00 2.57
88 89 1.381463 AGTCTTCCTCCGCCCCTAC 60.381 63.158 0.00 0.00 0.00 3.18
89 90 1.076192 GAGTCTTCCTCCGCCCCTA 60.076 63.158 0.00 0.00 33.79 3.53
90 91 2.364448 GAGTCTTCCTCCGCCCCT 60.364 66.667 0.00 0.00 33.79 4.79
91 92 3.839432 CGAGTCTTCCTCCGCCCC 61.839 72.222 0.00 0.00 36.82 5.80
92 93 2.754658 TCGAGTCTTCCTCCGCCC 60.755 66.667 0.00 0.00 36.82 6.13
93 94 2.047443 AGTCGAGTCTTCCTCCGCC 61.047 63.158 0.00 0.00 36.82 6.13
94 95 1.137825 CAGTCGAGTCTTCCTCCGC 59.862 63.158 0.00 0.00 36.82 5.54
95 96 1.137825 GCAGTCGAGTCTTCCTCCG 59.862 63.158 0.00 0.00 36.82 4.63
96 97 1.673920 CTAGCAGTCGAGTCTTCCTCC 59.326 57.143 0.00 0.00 36.82 4.30
97 98 1.673920 CCTAGCAGTCGAGTCTTCCTC 59.326 57.143 0.00 0.00 36.80 3.71
98 99 1.004979 ACCTAGCAGTCGAGTCTTCCT 59.995 52.381 0.00 0.00 0.00 3.36
99 100 1.465794 ACCTAGCAGTCGAGTCTTCC 58.534 55.000 0.00 0.00 0.00 3.46
100 101 3.579335 AAACCTAGCAGTCGAGTCTTC 57.421 47.619 0.00 0.00 0.00 2.87
101 102 5.411781 CATAAAACCTAGCAGTCGAGTCTT 58.588 41.667 0.00 0.00 0.00 3.01
102 103 4.142138 CCATAAAACCTAGCAGTCGAGTCT 60.142 45.833 0.00 0.00 0.00 3.24
103 104 4.113354 CCATAAAACCTAGCAGTCGAGTC 58.887 47.826 0.00 0.00 0.00 3.36
104 105 3.514309 ACCATAAAACCTAGCAGTCGAGT 59.486 43.478 0.00 0.00 0.00 4.18
105 106 4.113354 GACCATAAAACCTAGCAGTCGAG 58.887 47.826 0.00 0.00 0.00 4.04
106 107 3.118884 GGACCATAAAACCTAGCAGTCGA 60.119 47.826 0.00 0.00 0.00 4.20
107 108 3.118738 AGGACCATAAAACCTAGCAGTCG 60.119 47.826 0.00 0.00 31.78 4.18
108 109 4.443621 GAGGACCATAAAACCTAGCAGTC 58.556 47.826 0.00 0.00 33.89 3.51
109 110 3.118738 CGAGGACCATAAAACCTAGCAGT 60.119 47.826 0.00 0.00 33.89 4.40
110 111 3.118738 ACGAGGACCATAAAACCTAGCAG 60.119 47.826 0.00 0.00 33.89 4.24
111 112 2.835764 ACGAGGACCATAAAACCTAGCA 59.164 45.455 0.00 0.00 33.89 3.49
112 113 3.538634 ACGAGGACCATAAAACCTAGC 57.461 47.619 0.00 0.00 33.89 3.42
113 114 5.935789 TGAAAACGAGGACCATAAAACCTAG 59.064 40.000 0.00 0.00 33.89 3.02
114 115 5.702209 GTGAAAACGAGGACCATAAAACCTA 59.298 40.000 0.00 0.00 33.89 3.08
115 116 4.517832 GTGAAAACGAGGACCATAAAACCT 59.482 41.667 0.00 0.00 36.68 3.50
116 117 4.320714 GGTGAAAACGAGGACCATAAAACC 60.321 45.833 0.00 0.00 0.00 3.27
117 118 4.276431 TGGTGAAAACGAGGACCATAAAAC 59.724 41.667 0.00 0.00 33.44 2.43
118 119 4.462133 TGGTGAAAACGAGGACCATAAAA 58.538 39.130 0.00 0.00 33.44 1.52
119 120 4.088056 TGGTGAAAACGAGGACCATAAA 57.912 40.909 0.00 0.00 33.44 1.40
120 121 3.773418 TGGTGAAAACGAGGACCATAA 57.227 42.857 0.00 0.00 33.44 1.90
121 122 3.992943 ATGGTGAAAACGAGGACCATA 57.007 42.857 0.00 0.00 45.47 2.74
122 123 2.879103 ATGGTGAAAACGAGGACCAT 57.121 45.000 0.00 0.00 43.09 3.55
123 124 2.649531 AATGGTGAAAACGAGGACCA 57.350 45.000 0.00 0.00 42.60 4.02
124 125 4.048504 CAAAAATGGTGAAAACGAGGACC 58.951 43.478 0.00 0.00 0.00 4.46
125 126 4.678622 ACAAAAATGGTGAAAACGAGGAC 58.321 39.130 0.00 0.00 0.00 3.85
126 127 4.993029 ACAAAAATGGTGAAAACGAGGA 57.007 36.364 0.00 0.00 0.00 3.71
127 128 5.726413 GCAAACAAAAATGGTGAAAACGAGG 60.726 40.000 0.00 0.00 0.00 4.63
128 129 5.063312 AGCAAACAAAAATGGTGAAAACGAG 59.937 36.000 0.00 0.00 0.00 4.18
129 130 4.932200 AGCAAACAAAAATGGTGAAAACGA 59.068 33.333 0.00 0.00 0.00 3.85
130 131 5.215239 AGCAAACAAAAATGGTGAAAACG 57.785 34.783 0.00 0.00 0.00 3.60
131 132 6.714492 CCTAGCAAACAAAAATGGTGAAAAC 58.286 36.000 0.00 0.00 0.00 2.43
132 133 5.295540 GCCTAGCAAACAAAAATGGTGAAAA 59.704 36.000 0.00 0.00 0.00 2.29
133 134 4.813697 GCCTAGCAAACAAAAATGGTGAAA 59.186 37.500 0.00 0.00 0.00 2.69
134 135 4.100808 AGCCTAGCAAACAAAAATGGTGAA 59.899 37.500 0.00 0.00 0.00 3.18
135 136 3.640967 AGCCTAGCAAACAAAAATGGTGA 59.359 39.130 0.00 0.00 0.00 4.02
136 137 3.993920 AGCCTAGCAAACAAAAATGGTG 58.006 40.909 0.00 0.00 0.00 4.17
137 138 4.687901 AAGCCTAGCAAACAAAAATGGT 57.312 36.364 0.00 0.00 0.00 3.55
138 139 6.024552 TCTAAGCCTAGCAAACAAAAATGG 57.975 37.500 0.00 0.00 0.00 3.16
139 140 5.574443 GCTCTAAGCCTAGCAAACAAAAATG 59.426 40.000 0.00 0.00 38.63 2.32
140 141 5.243730 TGCTCTAAGCCTAGCAAACAAAAAT 59.756 36.000 0.00 0.00 45.36 1.82
141 142 4.582656 TGCTCTAAGCCTAGCAAACAAAAA 59.417 37.500 0.00 0.00 45.36 1.94
142 143 4.141287 TGCTCTAAGCCTAGCAAACAAAA 58.859 39.130 0.00 0.00 45.36 2.44
143 144 3.750371 TGCTCTAAGCCTAGCAAACAAA 58.250 40.909 0.00 0.00 45.36 2.83
144 145 3.417069 TGCTCTAAGCCTAGCAAACAA 57.583 42.857 0.00 0.00 45.36 2.83
150 151 1.967066 TGGAGATGCTCTAAGCCTAGC 59.033 52.381 0.00 0.00 41.51 3.42
151 152 2.029110 GCTGGAGATGCTCTAAGCCTAG 60.029 54.545 0.00 0.00 41.51 3.02
152 153 1.967066 GCTGGAGATGCTCTAAGCCTA 59.033 52.381 0.00 0.00 41.51 3.93
153 154 0.758123 GCTGGAGATGCTCTAAGCCT 59.242 55.000 0.00 0.00 41.51 4.58
154 155 0.250252 GGCTGGAGATGCTCTAAGCC 60.250 60.000 18.77 18.77 45.32 4.35
155 156 0.599728 CGGCTGGAGATGCTCTAAGC 60.600 60.000 11.59 11.59 42.82 3.09
156 157 0.749649 ACGGCTGGAGATGCTCTAAG 59.250 55.000 0.00 0.00 0.00 2.18
157 158 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
158 159 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
159 160 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
160 161 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
176 177 2.840753 GGTGTTCTTGGGGGCTCCA 61.841 63.158 0.00 0.00 45.43 3.86
177 178 2.035783 GGTGTTCTTGGGGGCTCC 59.964 66.667 0.00 0.00 0.00 4.70
178 179 1.603739 GTGGTGTTCTTGGGGGCTC 60.604 63.158 0.00 0.00 0.00 4.70
179 180 2.520968 GTGGTGTTCTTGGGGGCT 59.479 61.111 0.00 0.00 0.00 5.19
180 181 2.600470 GGTGGTGTTCTTGGGGGC 60.600 66.667 0.00 0.00 0.00 5.80
181 182 2.282180 CGGTGGTGTTCTTGGGGG 60.282 66.667 0.00 0.00 0.00 5.40
182 183 1.149627 TTCGGTGGTGTTCTTGGGG 59.850 57.895 0.00 0.00 0.00 4.96
183 184 1.170290 GGTTCGGTGGTGTTCTTGGG 61.170 60.000 0.00 0.00 0.00 4.12
184 185 0.464735 TGGTTCGGTGGTGTTCTTGG 60.465 55.000 0.00 0.00 0.00 3.61
185 186 1.384525 TTGGTTCGGTGGTGTTCTTG 58.615 50.000 0.00 0.00 0.00 3.02
186 187 2.131776 TTTGGTTCGGTGGTGTTCTT 57.868 45.000 0.00 0.00 0.00 2.52
187 188 2.131776 TTTTGGTTCGGTGGTGTTCT 57.868 45.000 0.00 0.00 0.00 3.01
188 189 2.943449 TTTTTGGTTCGGTGGTGTTC 57.057 45.000 0.00 0.00 0.00 3.18
204 205 2.645297 ACCCCCAAAACACCAACTTTTT 59.355 40.909 0.00 0.00 0.00 1.94
205 206 2.237643 GACCCCCAAAACACCAACTTTT 59.762 45.455 0.00 0.00 0.00 2.27
206 207 1.834896 GACCCCCAAAACACCAACTTT 59.165 47.619 0.00 0.00 0.00 2.66
207 208 1.273324 TGACCCCCAAAACACCAACTT 60.273 47.619 0.00 0.00 0.00 2.66
208 209 0.336737 TGACCCCCAAAACACCAACT 59.663 50.000 0.00 0.00 0.00 3.16
209 210 1.343142 GATGACCCCCAAAACACCAAC 59.657 52.381 0.00 0.00 0.00 3.77
210 211 1.710816 GATGACCCCCAAAACACCAA 58.289 50.000 0.00 0.00 0.00 3.67
211 212 0.178947 GGATGACCCCCAAAACACCA 60.179 55.000 0.00 0.00 0.00 4.17
212 213 1.248101 CGGATGACCCCCAAAACACC 61.248 60.000 0.00 0.00 0.00 4.16
213 214 1.248101 CCGGATGACCCCCAAAACAC 61.248 60.000 0.00 0.00 0.00 3.32
214 215 1.075836 CCGGATGACCCCCAAAACA 59.924 57.895 0.00 0.00 0.00 2.83
215 216 2.348104 GCCGGATGACCCCCAAAAC 61.348 63.158 5.05 0.00 0.00 2.43
216 217 2.036572 GCCGGATGACCCCCAAAA 59.963 61.111 5.05 0.00 0.00 2.44
217 218 4.418328 CGCCGGATGACCCCCAAA 62.418 66.667 5.05 0.00 0.00 3.28
220 221 2.047213 TATTTCGCCGGATGACCCCC 62.047 60.000 5.05 0.00 0.00 5.40
221 222 0.036306 ATATTTCGCCGGATGACCCC 59.964 55.000 5.05 0.00 0.00 4.95
222 223 1.156736 CATATTTCGCCGGATGACCC 58.843 55.000 5.05 0.00 0.00 4.46
223 224 1.156736 CCATATTTCGCCGGATGACC 58.843 55.000 5.05 0.00 0.00 4.02
224 225 1.156736 CCCATATTTCGCCGGATGAC 58.843 55.000 5.05 0.00 0.00 3.06
225 226 0.036164 CCCCATATTTCGCCGGATGA 59.964 55.000 5.05 0.00 0.00 2.92
226 227 0.960364 CCCCCATATTTCGCCGGATG 60.960 60.000 5.05 0.00 0.00 3.51
227 228 1.378762 CCCCCATATTTCGCCGGAT 59.621 57.895 5.05 0.00 0.00 4.18
228 229 2.833227 CCCCCATATTTCGCCGGA 59.167 61.111 5.05 0.00 0.00 5.14
229 230 2.983592 GCCCCCATATTTCGCCGG 60.984 66.667 0.00 0.00 0.00 6.13
230 231 1.603455 ATGCCCCCATATTTCGCCG 60.603 57.895 0.00 0.00 0.00 6.46
231 232 0.539438 TCATGCCCCCATATTTCGCC 60.539 55.000 0.00 0.00 0.00 5.54
232 233 0.883833 CTCATGCCCCCATATTTCGC 59.116 55.000 0.00 0.00 0.00 4.70
233 234 1.073763 TCCTCATGCCCCCATATTTCG 59.926 52.381 0.00 0.00 0.00 3.46
234 235 2.556114 CCTCCTCATGCCCCCATATTTC 60.556 54.545 0.00 0.00 0.00 2.17
235 236 1.430464 CCTCCTCATGCCCCCATATTT 59.570 52.381 0.00 0.00 0.00 1.40
236 237 1.078955 CCTCCTCATGCCCCCATATT 58.921 55.000 0.00 0.00 0.00 1.28
237 238 0.848203 CCCTCCTCATGCCCCCATAT 60.848 60.000 0.00 0.00 0.00 1.78
238 239 1.464001 CCCTCCTCATGCCCCCATA 60.464 63.158 0.00 0.00 0.00 2.74
239 240 2.780040 CCCTCCTCATGCCCCCAT 60.780 66.667 0.00 0.00 0.00 4.00
242 243 3.504204 GATGCCCTCCTCATGCCCC 62.504 68.421 0.00 0.00 0.00 5.80
243 244 2.004408 AAGATGCCCTCCTCATGCCC 62.004 60.000 0.00 0.00 0.00 5.36
244 245 0.536915 GAAGATGCCCTCCTCATGCC 60.537 60.000 0.00 0.00 0.00 4.40
245 246 0.536915 GGAAGATGCCCTCCTCATGC 60.537 60.000 0.00 0.00 0.00 4.06
246 247 0.110104 GGGAAGATGCCCTCCTCATG 59.890 60.000 0.00 0.00 45.12 3.07
247 248 2.549580 GGGAAGATGCCCTCCTCAT 58.450 57.895 0.00 0.00 45.12 2.90
248 249 4.073201 GGGAAGATGCCCTCCTCA 57.927 61.111 0.00 0.00 45.12 3.86
255 256 0.678048 GGTGTGACTGGGAAGATGCC 60.678 60.000 0.00 0.00 0.00 4.40
256 257 0.678048 GGGTGTGACTGGGAAGATGC 60.678 60.000 0.00 0.00 0.00 3.91
257 258 0.035056 GGGGTGTGACTGGGAAGATG 60.035 60.000 0.00 0.00 0.00 2.90
258 259 0.475632 TGGGGTGTGACTGGGAAGAT 60.476 55.000 0.00 0.00 0.00 2.40
259 260 1.074090 TGGGGTGTGACTGGGAAGA 60.074 57.895 0.00 0.00 0.00 2.87
260 261 1.073199 GTGGGGTGTGACTGGGAAG 59.927 63.158 0.00 0.00 0.00 3.46
261 262 2.457323 GGTGGGGTGTGACTGGGAA 61.457 63.158 0.00 0.00 0.00 3.97
262 263 2.852075 GGTGGGGTGTGACTGGGA 60.852 66.667 0.00 0.00 0.00 4.37
263 264 3.966543 GGGTGGGGTGTGACTGGG 61.967 72.222 0.00 0.00 0.00 4.45
264 265 3.966543 GGGGTGGGGTGTGACTGG 61.967 72.222 0.00 0.00 0.00 4.00
265 266 2.697147 CTTGGGGTGGGGTGTGACTG 62.697 65.000 0.00 0.00 0.00 3.51
266 267 2.369015 TTGGGGTGGGGTGTGACT 60.369 61.111 0.00 0.00 0.00 3.41
267 268 2.115266 CTTGGGGTGGGGTGTGAC 59.885 66.667 0.00 0.00 0.00 3.67
268 269 3.897122 GCTTGGGGTGGGGTGTGA 61.897 66.667 0.00 0.00 0.00 3.58
269 270 3.747521 TTGCTTGGGGTGGGGTGTG 62.748 63.158 0.00 0.00 0.00 3.82
270 271 2.537714 TTTTGCTTGGGGTGGGGTGT 62.538 55.000 0.00 0.00 0.00 4.16
271 272 1.757423 CTTTTGCTTGGGGTGGGGTG 61.757 60.000 0.00 0.00 0.00 4.61
272 273 1.459348 CTTTTGCTTGGGGTGGGGT 60.459 57.895 0.00 0.00 0.00 4.95
273 274 1.053835 AACTTTTGCTTGGGGTGGGG 61.054 55.000 0.00 0.00 0.00 4.96
274 275 0.836606 AAACTTTTGCTTGGGGTGGG 59.163 50.000 0.00 0.00 0.00 4.61
275 276 1.209261 ACAAACTTTTGCTTGGGGTGG 59.791 47.619 1.49 0.00 41.79 4.61
276 277 2.093764 TCACAAACTTTTGCTTGGGGTG 60.094 45.455 1.49 0.00 41.79 4.61
277 278 2.168313 CTCACAAACTTTTGCTTGGGGT 59.832 45.455 1.49 0.00 41.79 4.95
278 279 2.430332 TCTCACAAACTTTTGCTTGGGG 59.570 45.455 1.49 0.00 41.79 4.96
279 280 3.799281 TCTCACAAACTTTTGCTTGGG 57.201 42.857 1.49 0.00 41.79 4.12
280 281 6.479095 TTTTTCTCACAAACTTTTGCTTGG 57.521 33.333 1.49 0.00 41.79 3.61
281 282 7.741198 TCATTTTTCTCACAAACTTTTGCTTG 58.259 30.769 1.49 0.00 41.79 4.01
282 283 7.903995 TCATTTTTCTCACAAACTTTTGCTT 57.096 28.000 1.49 0.00 41.79 3.91
283 284 8.496707 AATCATTTTTCTCACAAACTTTTGCT 57.503 26.923 1.49 0.00 41.79 3.91
288 289 9.533253 CCACTTAATCATTTTTCTCACAAACTT 57.467 29.630 0.00 0.00 0.00 2.66
289 290 8.143835 CCCACTTAATCATTTTTCTCACAAACT 58.856 33.333 0.00 0.00 0.00 2.66
290 291 7.095649 GCCCACTTAATCATTTTTCTCACAAAC 60.096 37.037 0.00 0.00 0.00 2.93
291 292 6.928492 GCCCACTTAATCATTTTTCTCACAAA 59.072 34.615 0.00 0.00 0.00 2.83
292 293 6.454795 GCCCACTTAATCATTTTTCTCACAA 58.545 36.000 0.00 0.00 0.00 3.33
293 294 5.047377 GGCCCACTTAATCATTTTTCTCACA 60.047 40.000 0.00 0.00 0.00 3.58
294 295 5.047377 TGGCCCACTTAATCATTTTTCTCAC 60.047 40.000 0.00 0.00 0.00 3.51
295 296 5.083122 TGGCCCACTTAATCATTTTTCTCA 58.917 37.500 0.00 0.00 0.00 3.27
296 297 5.659440 TGGCCCACTTAATCATTTTTCTC 57.341 39.130 0.00 0.00 0.00 2.87
297 298 5.779771 TCTTGGCCCACTTAATCATTTTTCT 59.220 36.000 0.00 0.00 0.00 2.52
298 299 6.036577 TCTTGGCCCACTTAATCATTTTTC 57.963 37.500 0.00 0.00 0.00 2.29
299 300 5.779771 TCTCTTGGCCCACTTAATCATTTTT 59.220 36.000 0.00 0.00 0.00 1.94
300 301 5.332743 TCTCTTGGCCCACTTAATCATTTT 58.667 37.500 0.00 0.00 0.00 1.82
301 302 4.934356 TCTCTTGGCCCACTTAATCATTT 58.066 39.130 0.00 0.00 0.00 2.32
302 303 4.591321 TCTCTTGGCCCACTTAATCATT 57.409 40.909 0.00 0.00 0.00 2.57
303 304 4.591321 TTCTCTTGGCCCACTTAATCAT 57.409 40.909 0.00 0.00 0.00 2.45
304 305 4.335416 CTTTCTCTTGGCCCACTTAATCA 58.665 43.478 0.00 0.00 0.00 2.57
305 306 3.696548 CCTTTCTCTTGGCCCACTTAATC 59.303 47.826 0.00 0.00 0.00 1.75
306 307 3.333680 TCCTTTCTCTTGGCCCACTTAAT 59.666 43.478 0.00 0.00 0.00 1.40
307 308 2.714250 TCCTTTCTCTTGGCCCACTTAA 59.286 45.455 0.00 0.00 0.00 1.85
308 309 2.039879 GTCCTTTCTCTTGGCCCACTTA 59.960 50.000 0.00 0.00 0.00 2.24
309 310 1.149101 TCCTTTCTCTTGGCCCACTT 58.851 50.000 0.00 0.00 0.00 3.16
310 311 0.402121 GTCCTTTCTCTTGGCCCACT 59.598 55.000 0.00 0.00 0.00 4.00
311 312 0.110486 TGTCCTTTCTCTTGGCCCAC 59.890 55.000 0.00 0.00 0.00 4.61
312 313 0.110486 GTGTCCTTTCTCTTGGCCCA 59.890 55.000 0.00 0.00 0.00 5.36
313 314 0.955919 CGTGTCCTTTCTCTTGGCCC 60.956 60.000 0.00 0.00 0.00 5.80
314 315 0.250338 ACGTGTCCTTTCTCTTGGCC 60.250 55.000 0.00 0.00 0.00 5.36
315 316 0.868406 CACGTGTCCTTTCTCTTGGC 59.132 55.000 7.58 0.00 0.00 4.52
316 317 2.408050 CTCACGTGTCCTTTCTCTTGG 58.592 52.381 16.51 0.00 0.00 3.61
317 318 2.224066 ACCTCACGTGTCCTTTCTCTTG 60.224 50.000 16.51 0.00 0.00 3.02
318 319 2.040178 ACCTCACGTGTCCTTTCTCTT 58.960 47.619 16.51 0.00 0.00 2.85
319 320 1.341531 CACCTCACGTGTCCTTTCTCT 59.658 52.381 16.51 0.00 37.73 3.10
320 321 1.340248 TCACCTCACGTGTCCTTTCTC 59.660 52.381 16.51 0.00 43.51 2.87
321 322 1.068741 GTCACCTCACGTGTCCTTTCT 59.931 52.381 16.51 0.00 43.51 2.52
322 323 1.202486 TGTCACCTCACGTGTCCTTTC 60.202 52.381 16.51 4.70 43.51 2.62
323 324 0.828022 TGTCACCTCACGTGTCCTTT 59.172 50.000 16.51 0.00 43.51 3.11
324 325 0.104304 GTGTCACCTCACGTGTCCTT 59.896 55.000 16.51 0.00 43.51 3.36
325 326 1.740285 GTGTCACCTCACGTGTCCT 59.260 57.895 16.51 0.00 43.51 3.85
326 327 4.338327 GTGTCACCTCACGTGTCC 57.662 61.111 16.51 0.00 43.51 4.02
332 333 1.352156 GGCGAATCGTGTCACCTCAC 61.352 60.000 4.07 0.00 35.28 3.51
333 334 1.080093 GGCGAATCGTGTCACCTCA 60.080 57.895 4.07 0.00 0.00 3.86
334 335 2.158959 CGGCGAATCGTGTCACCTC 61.159 63.158 0.00 0.00 0.00 3.85
335 336 2.126071 CGGCGAATCGTGTCACCT 60.126 61.111 0.00 0.00 0.00 4.00
336 337 1.286354 TTTCGGCGAATCGTGTCACC 61.286 55.000 24.33 0.00 0.00 4.02
337 338 0.179258 GTTTCGGCGAATCGTGTCAC 60.179 55.000 24.33 12.71 0.00 3.67
338 339 0.319211 AGTTTCGGCGAATCGTGTCA 60.319 50.000 24.33 3.16 0.00 3.58
339 340 0.788391 AAGTTTCGGCGAATCGTGTC 59.212 50.000 24.33 9.69 0.00 3.67
340 341 0.788391 GAAGTTTCGGCGAATCGTGT 59.212 50.000 24.33 12.84 0.00 4.49
341 342 0.094730 GGAAGTTTCGGCGAATCGTG 59.905 55.000 24.33 0.00 0.00 4.35
342 343 1.349259 CGGAAGTTTCGGCGAATCGT 61.349 55.000 24.33 20.11 0.00 3.73
343 344 1.343821 CGGAAGTTTCGGCGAATCG 59.656 57.895 24.33 16.95 0.00 3.34
344 345 1.060465 GCGGAAGTTTCGGCGAATC 59.940 57.895 24.33 21.92 42.30 2.52
345 346 3.174788 GCGGAAGTTTCGGCGAAT 58.825 55.556 24.33 8.76 42.30 3.34
350 351 3.475774 CGTCGGCGGAAGTTTCGG 61.476 66.667 7.21 0.00 0.00 4.30
351 352 4.130281 GCGTCGGCGGAAGTTTCG 62.130 66.667 13.05 0.00 38.78 3.46
352 353 3.785499 GGCGTCGGCGGAAGTTTC 61.785 66.667 13.05 0.00 41.24 2.78
369 370 4.426313 GTTCGGGGCCTCTTGGGG 62.426 72.222 0.00 0.00 35.12 4.96
370 371 4.778143 CGTTCGGGGCCTCTTGGG 62.778 72.222 0.00 0.00 38.36 4.12
381 382 4.084888 GAAACCCAGCGCGTTCGG 62.085 66.667 8.43 6.50 35.95 4.30
382 383 4.424430 CGAAACCCAGCGCGTTCG 62.424 66.667 8.43 10.56 39.07 3.95
383 384 4.736631 GCGAAACCCAGCGCGTTC 62.737 66.667 8.43 0.81 43.96 3.95
389 390 4.699522 ACCGAGGCGAAACCCAGC 62.700 66.667 0.00 0.00 40.58 4.85
390 391 1.599797 AAACCGAGGCGAAACCCAG 60.600 57.895 0.00 0.00 40.58 4.45
391 392 1.894756 CAAACCGAGGCGAAACCCA 60.895 57.895 0.00 0.00 40.58 4.51
392 393 2.951458 CAAACCGAGGCGAAACCC 59.049 61.111 0.00 0.00 40.58 4.11
393 394 2.254350 GCAAACCGAGGCGAAACC 59.746 61.111 0.00 0.00 39.61 3.27
394 395 2.254350 GGCAAACCGAGGCGAAAC 59.746 61.111 0.00 0.00 0.00 2.78
404 405 1.226575 GAAATAGCGCCGGCAAACC 60.227 57.895 28.98 11.34 43.41 3.27
405 406 1.582680 CGAAATAGCGCCGGCAAAC 60.583 57.895 28.98 15.48 43.41 2.93
406 407 1.742140 TCGAAATAGCGCCGGCAAA 60.742 52.632 28.98 11.43 43.41 3.68
407 408 2.125472 TCGAAATAGCGCCGGCAA 60.125 55.556 28.98 11.85 43.41 4.52
408 409 2.888534 GTCGAAATAGCGCCGGCA 60.889 61.111 28.98 7.49 43.41 5.69
409 410 3.984765 CGTCGAAATAGCGCCGGC 61.985 66.667 19.07 19.07 40.37 6.13
410 411 2.574222 GACGTCGAAATAGCGCCGG 61.574 63.158 2.29 0.00 36.92 6.13
411 412 2.574222 GGACGTCGAAATAGCGCCG 61.574 63.158 9.92 0.00 38.70 6.46
412 413 1.226888 AGGACGTCGAAATAGCGCC 60.227 57.895 9.92 0.00 0.00 6.53
413 414 0.524816 TCAGGACGTCGAAATAGCGC 60.525 55.000 9.92 0.00 0.00 5.92
414 415 1.467875 CTCAGGACGTCGAAATAGCG 58.532 55.000 9.92 0.00 0.00 4.26
415 416 1.536284 CCCTCAGGACGTCGAAATAGC 60.536 57.143 9.92 0.00 33.47 2.97
416 417 1.536284 GCCCTCAGGACGTCGAAATAG 60.536 57.143 9.92 2.52 33.47 1.73
417 418 0.458669 GCCCTCAGGACGTCGAAATA 59.541 55.000 9.92 0.00 33.47 1.40
418 419 1.218316 GCCCTCAGGACGTCGAAAT 59.782 57.895 9.92 0.00 33.47 2.17
419 420 2.654877 GCCCTCAGGACGTCGAAA 59.345 61.111 9.92 0.00 33.47 3.46
420 421 3.744719 CGCCCTCAGGACGTCGAA 61.745 66.667 9.92 0.00 33.47 3.71
423 424 4.803426 CAGCGCCCTCAGGACGTC 62.803 72.222 7.13 7.13 35.78 4.34
444 445 2.726850 GAAAAACGGCCCAGTCACGC 62.727 60.000 0.00 0.00 0.00 5.34
445 446 1.281656 GAAAAACGGCCCAGTCACG 59.718 57.895 0.00 0.00 0.00 4.35
446 447 1.281656 CGAAAAACGGCCCAGTCAC 59.718 57.895 0.00 0.00 38.46 3.67
447 448 3.739167 CGAAAAACGGCCCAGTCA 58.261 55.556 0.00 0.00 38.46 3.41
468 469 2.243602 TAGGTTCAGACGGCGTTTTT 57.756 45.000 16.19 0.00 0.00 1.94
469 470 2.243602 TTAGGTTCAGACGGCGTTTT 57.756 45.000 16.19 2.50 0.00 2.43
470 471 2.243602 TTTAGGTTCAGACGGCGTTT 57.756 45.000 16.19 5.29 0.00 3.60
471 472 1.869132 GTTTTAGGTTCAGACGGCGTT 59.131 47.619 16.19 0.74 0.00 4.84
472 473 1.505425 GTTTTAGGTTCAGACGGCGT 58.495 50.000 14.65 14.65 0.00 5.68
473 474 0.794473 GGTTTTAGGTTCAGACGGCG 59.206 55.000 4.80 4.80 0.00 6.46
474 475 0.794473 CGGTTTTAGGTTCAGACGGC 59.206 55.000 0.00 0.00 0.00 5.68
475 476 2.334838 CTCGGTTTTAGGTTCAGACGG 58.665 52.381 0.00 0.00 0.00 4.79
476 477 1.725164 GCTCGGTTTTAGGTTCAGACG 59.275 52.381 0.00 0.00 0.00 4.18
477 478 2.074576 GGCTCGGTTTTAGGTTCAGAC 58.925 52.381 0.00 0.00 0.00 3.51
478 479 1.975680 AGGCTCGGTTTTAGGTTCAGA 59.024 47.619 0.00 0.00 0.00 3.27
479 480 2.474410 AGGCTCGGTTTTAGGTTCAG 57.526 50.000 0.00 0.00 0.00 3.02
480 481 4.354893 TTTAGGCTCGGTTTTAGGTTCA 57.645 40.909 0.00 0.00 0.00 3.18
481 482 5.335426 CCTTTTTAGGCTCGGTTTTAGGTTC 60.335 44.000 0.00 0.00 0.00 3.62
482 483 4.521639 CCTTTTTAGGCTCGGTTTTAGGTT 59.478 41.667 0.00 0.00 0.00 3.50
483 484 4.077108 CCTTTTTAGGCTCGGTTTTAGGT 58.923 43.478 0.00 0.00 0.00 3.08
484 485 4.077108 ACCTTTTTAGGCTCGGTTTTAGG 58.923 43.478 0.00 0.00 0.00 2.69
485 486 4.517832 ACACCTTTTTAGGCTCGGTTTTAG 59.482 41.667 0.00 0.00 0.00 1.85
486 487 4.463070 ACACCTTTTTAGGCTCGGTTTTA 58.537 39.130 0.00 0.00 0.00 1.52
487 488 3.293337 ACACCTTTTTAGGCTCGGTTTT 58.707 40.909 0.00 0.00 0.00 2.43
488 489 2.882761 GACACCTTTTTAGGCTCGGTTT 59.117 45.455 0.00 0.00 0.00 3.27
489 490 2.501261 GACACCTTTTTAGGCTCGGTT 58.499 47.619 0.00 0.00 0.00 4.44
490 491 1.271217 GGACACCTTTTTAGGCTCGGT 60.271 52.381 0.00 0.00 0.00 4.69
491 492 1.003233 AGGACACCTTTTTAGGCTCGG 59.997 52.381 0.00 0.00 0.00 4.63
492 493 2.076863 CAGGACACCTTTTTAGGCTCG 58.923 52.381 0.00 0.00 0.00 5.03
493 494 2.437413 CCAGGACACCTTTTTAGGCTC 58.563 52.381 0.00 0.00 0.00 4.70
494 495 1.075536 CCCAGGACACCTTTTTAGGCT 59.924 52.381 0.00 0.00 0.00 4.58
495 496 1.203013 ACCCAGGACACCTTTTTAGGC 60.203 52.381 0.00 0.00 0.00 3.93
496 497 2.514803 CACCCAGGACACCTTTTTAGG 58.485 52.381 0.00 0.00 0.00 2.69
497 498 2.107552 TCCACCCAGGACACCTTTTTAG 59.892 50.000 0.00 0.00 43.07 1.85
498 499 2.136863 TCCACCCAGGACACCTTTTTA 58.863 47.619 0.00 0.00 43.07 1.52
499 500 0.930726 TCCACCCAGGACACCTTTTT 59.069 50.000 0.00 0.00 43.07 1.94
500 501 2.640473 TCCACCCAGGACACCTTTT 58.360 52.632 0.00 0.00 43.07 2.27
501 502 4.430388 TCCACCCAGGACACCTTT 57.570 55.556 0.00 0.00 43.07 3.11
510 511 3.706373 CTCCACCCGTCCACCCAG 61.706 72.222 0.00 0.00 0.00 4.45
513 514 4.016706 CACCTCCACCCGTCCACC 62.017 72.222 0.00 0.00 0.00 4.61
514 515 4.699522 GCACCTCCACCCGTCCAC 62.700 72.222 0.00 0.00 0.00 4.02
515 516 4.954118 AGCACCTCCACCCGTCCA 62.954 66.667 0.00 0.00 0.00 4.02
516 517 4.083862 GAGCACCTCCACCCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
517 518 1.255667 TAAGAGCACCTCCACCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
518 519 0.834687 TTAAGAGCACCTCCACCCGT 60.835 55.000 0.00 0.00 0.00 5.28
519 520 0.391263 GTTAAGAGCACCTCCACCCG 60.391 60.000 0.00 0.00 0.00 5.28
520 521 0.984995 AGTTAAGAGCACCTCCACCC 59.015 55.000 0.00 0.00 0.00 4.61
521 522 4.443621 GAATAGTTAAGAGCACCTCCACC 58.556 47.826 0.00 0.00 0.00 4.61
522 523 4.113354 CGAATAGTTAAGAGCACCTCCAC 58.887 47.826 0.00 0.00 0.00 4.02
523 524 4.021229 TCGAATAGTTAAGAGCACCTCCA 58.979 43.478 0.00 0.00 0.00 3.86
524 525 4.650754 TCGAATAGTTAAGAGCACCTCC 57.349 45.455 0.00 0.00 0.00 4.30
525 526 7.064728 ACAAAATCGAATAGTTAAGAGCACCTC 59.935 37.037 0.00 0.00 0.00 3.85
526 527 6.879458 ACAAAATCGAATAGTTAAGAGCACCT 59.121 34.615 0.00 0.00 0.00 4.00
527 528 7.073342 ACAAAATCGAATAGTTAAGAGCACC 57.927 36.000 0.00 0.00 0.00 5.01
528 529 7.739295 TGACAAAATCGAATAGTTAAGAGCAC 58.261 34.615 0.00 0.00 0.00 4.40
529 530 7.899178 TGACAAAATCGAATAGTTAAGAGCA 57.101 32.000 0.00 0.00 0.00 4.26
549 550 4.880886 CAATTCACTTGCCGATATGACA 57.119 40.909 0.00 0.00 0.00 3.58
621 622 4.900635 AGATTTTGTGTTGGAGTGTGAC 57.099 40.909 0.00 0.00 0.00 3.67
805 813 2.367202 GGCCCCTCGATTGGTCTGA 61.367 63.158 0.00 0.00 0.00 3.27
914 928 4.245038 ATGAACCAATGGCAAGGTGCAC 62.245 50.000 21.41 8.80 45.99 4.57
937 951 1.600636 CACCAGTGACCCGCATGTT 60.601 57.895 0.00 0.00 0.00 2.71
1028 1048 2.401351 GAGGTAGTTGTGTGTTCGGAC 58.599 52.381 0.00 0.00 0.00 4.79
1030 1050 1.415374 CGAGGTAGTTGTGTGTTCGG 58.585 55.000 0.00 0.00 0.00 4.30
1032 1052 2.150397 AGCGAGGTAGTTGTGTGTTC 57.850 50.000 0.00 0.00 0.00 3.18
1033 1053 3.955650 ATAGCGAGGTAGTTGTGTGTT 57.044 42.857 0.00 0.00 0.00 3.32
1617 1758 2.626780 CCAGTGCTCGTCGTCCAGA 61.627 63.158 0.00 0.00 0.00 3.86
1793 1947 3.508012 CACAGTACTGCTCTCTACAACCT 59.492 47.826 22.90 0.00 0.00 3.50
1953 2531 2.499693 TCCATGGAGCGAATGACACTTA 59.500 45.455 11.44 0.00 0.00 2.24
1954 2532 1.278985 TCCATGGAGCGAATGACACTT 59.721 47.619 11.44 0.00 0.00 3.16
1958 2542 1.600957 CATGTCCATGGAGCGAATGAC 59.399 52.381 16.81 1.30 35.24 3.06
1990 2591 5.581085 AGCTGTGTCGTCCATTACTAATTTC 59.419 40.000 0.00 0.00 0.00 2.17
1991 2592 5.488341 AGCTGTGTCGTCCATTACTAATTT 58.512 37.500 0.00 0.00 0.00 1.82
1992 2593 5.086104 AGCTGTGTCGTCCATTACTAATT 57.914 39.130 0.00 0.00 0.00 1.40
1994 2595 3.427098 CGAGCTGTGTCGTCCATTACTAA 60.427 47.826 0.00 0.00 35.14 2.24
1995 2596 2.096980 CGAGCTGTGTCGTCCATTACTA 59.903 50.000 0.00 0.00 35.14 1.82
1996 2597 1.135373 CGAGCTGTGTCGTCCATTACT 60.135 52.381 0.00 0.00 35.14 2.24
1997 2598 1.135489 TCGAGCTGTGTCGTCCATTAC 60.135 52.381 0.00 0.00 40.93 1.89
2021 2622 2.481568 GCCGTCCAAAAACAGTACTACC 59.518 50.000 0.00 0.00 0.00 3.18
2161 2772 4.492570 GGCGAGAAAGTGAATATGAACACG 60.493 45.833 0.00 0.00 41.22 4.49
2182 2793 2.103736 GTACGGGCGTGTCTAGGC 59.896 66.667 0.00 0.00 36.98 3.93
2183 2794 2.779033 GGGTACGGGCGTGTCTAGG 61.779 68.421 0.00 0.00 0.00 3.02
2192 2803 3.256936 GTTCAAACGGGTACGGGC 58.743 61.111 0.00 0.00 46.48 6.13
2208 2819 3.034721 TCGTTCAGAATTACTTGGCGT 57.965 42.857 0.00 0.00 0.00 5.68
2211 2822 7.133891 ACTTCATTCGTTCAGAATTACTTGG 57.866 36.000 0.00 0.00 46.80 3.61
2264 2877 7.981789 TCTTCAACTTAGCACAATAGTCATAGG 59.018 37.037 0.00 0.00 0.00 2.57
2276 3207 6.604735 TCTCAGTTTTCTTCAACTTAGCAC 57.395 37.500 0.00 0.00 34.60 4.40
2295 3226 7.285172 TCATGTCTTTTTGTTCCTCATTTCTCA 59.715 33.333 0.00 0.00 0.00 3.27
2387 3319 2.127758 GACGTTGCTTTCACGGCG 60.128 61.111 4.80 4.80 0.00 6.46
2391 3323 3.701241 TCATTTTGGACGTTGCTTTCAC 58.299 40.909 0.00 0.00 0.00 3.18
2430 3362 1.999648 AATCAGCTGCAGGGTTCAAA 58.000 45.000 17.12 0.00 0.00 2.69
2498 3432 6.258230 TGAACCAGCACAATAATCAAGAAG 57.742 37.500 0.00 0.00 0.00 2.85
2509 3443 4.998671 TCAGAATTTTGAACCAGCACAA 57.001 36.364 0.00 0.00 0.00 3.33
2533 3495 5.832060 ACCATACATGTGACTACTAGGGTAC 59.168 44.000 9.11 0.00 0.00 3.34
2561 3524 7.175119 TCGGAATCACTACTTAGGTATGATCAG 59.825 40.741 0.09 0.00 31.52 2.90
2572 3535 9.715121 AACAAACTAAATCGGAATCACTACTTA 57.285 29.630 0.00 0.00 0.00 2.24
2635 3599 7.394816 AGCTTCAAGCAAAAGTAATACTCCTA 58.605 34.615 13.10 0.00 45.56 2.94
2636 3600 6.241645 AGCTTCAAGCAAAAGTAATACTCCT 58.758 36.000 13.10 0.00 45.56 3.69
2637 3601 6.372937 AGAGCTTCAAGCAAAAGTAATACTCC 59.627 38.462 13.10 0.00 45.56 3.85
2638 3602 7.371126 AGAGCTTCAAGCAAAAGTAATACTC 57.629 36.000 13.10 0.00 45.56 2.59
2639 3603 7.751768 AAGAGCTTCAAGCAAAAGTAATACT 57.248 32.000 13.10 0.00 45.56 2.12
2640 3604 8.076178 TGAAAGAGCTTCAAGCAAAAGTAATAC 58.924 33.333 13.10 0.00 45.56 1.89
2717 3686 7.484975 TGTTGTGAAATGTTAAAAGGGTACAG 58.515 34.615 0.00 0.00 0.00 2.74
2774 3743 3.005554 AGAGATGCACACATGTACTTGC 58.994 45.455 15.87 15.87 36.35 4.01
2775 3744 4.092529 GTCAGAGATGCACACATGTACTTG 59.907 45.833 0.00 7.18 36.35 3.16
2776 3745 4.248859 GTCAGAGATGCACACATGTACTT 58.751 43.478 0.00 0.00 36.35 2.24
2778 3747 2.932614 GGTCAGAGATGCACACATGTAC 59.067 50.000 0.00 0.00 36.35 2.90
2779 3748 2.566724 TGGTCAGAGATGCACACATGTA 59.433 45.455 0.00 0.00 36.35 2.29
2780 3749 1.348696 TGGTCAGAGATGCACACATGT 59.651 47.619 0.00 0.00 36.35 3.21
2813 3782 2.164219 CCATGAGCACACCCATAACAAC 59.836 50.000 0.00 0.00 0.00 3.32
2821 3790 3.661648 ACCCCCATGAGCACACCC 61.662 66.667 0.00 0.00 0.00 4.61
2856 3825 3.486383 ACCGAGCTGGATCTTTCAAAAA 58.514 40.909 8.91 0.00 42.00 1.94
2857 3826 3.140325 ACCGAGCTGGATCTTTCAAAA 57.860 42.857 8.91 0.00 42.00 2.44
2858 3827 2.813754 CAACCGAGCTGGATCTTTCAAA 59.186 45.455 8.91 0.00 42.00 2.69
2859 3828 2.426522 CAACCGAGCTGGATCTTTCAA 58.573 47.619 8.91 0.00 42.00 2.69
2860 3829 1.339055 CCAACCGAGCTGGATCTTTCA 60.339 52.381 8.91 0.00 42.00 2.69
2861 3830 1.373570 CCAACCGAGCTGGATCTTTC 58.626 55.000 8.91 0.00 42.00 2.62
2862 3831 0.678048 GCCAACCGAGCTGGATCTTT 60.678 55.000 8.91 0.00 42.00 2.52
2863 3832 1.078143 GCCAACCGAGCTGGATCTT 60.078 57.895 8.91 0.00 42.00 2.40
2864 3833 1.630126 ATGCCAACCGAGCTGGATCT 61.630 55.000 8.91 0.00 42.00 2.75
2865 3834 0.749454 AATGCCAACCGAGCTGGATC 60.749 55.000 8.91 0.00 42.00 3.36
2866 3835 0.749454 GAATGCCAACCGAGCTGGAT 60.749 55.000 8.91 0.00 42.00 3.41
2867 3836 1.377202 GAATGCCAACCGAGCTGGA 60.377 57.895 8.91 0.00 42.00 3.86
2868 3837 1.033746 ATGAATGCCAACCGAGCTGG 61.034 55.000 0.00 0.00 46.41 4.85
2869 3838 0.813184 AATGAATGCCAACCGAGCTG 59.187 50.000 0.00 0.00 0.00 4.24
2870 3839 1.098050 GAATGAATGCCAACCGAGCT 58.902 50.000 0.00 0.00 0.00 4.09
2871 3840 0.810648 TGAATGAATGCCAACCGAGC 59.189 50.000 0.00 0.00 0.00 5.03
2872 3841 3.788333 AATGAATGAATGCCAACCGAG 57.212 42.857 0.00 0.00 0.00 4.63
2873 3842 4.439974 GCTAAATGAATGAATGCCAACCGA 60.440 41.667 0.00 0.00 0.00 4.69
2874 3843 3.798337 GCTAAATGAATGAATGCCAACCG 59.202 43.478 0.00 0.00 0.00 4.44
2875 3844 4.757594 TGCTAAATGAATGAATGCCAACC 58.242 39.130 0.00 0.00 0.00 3.77
2876 3845 5.653507 TCTGCTAAATGAATGAATGCCAAC 58.346 37.500 0.00 0.00 0.00 3.77
2877 3846 5.653330 TCTCTGCTAAATGAATGAATGCCAA 59.347 36.000 0.00 0.00 0.00 4.52
2878 3847 5.195185 TCTCTGCTAAATGAATGAATGCCA 58.805 37.500 0.00 0.00 0.00 4.92
2879 3848 5.530171 TCTCTCTGCTAAATGAATGAATGCC 59.470 40.000 0.00 0.00 0.00 4.40
2880 3849 6.615264 TCTCTCTGCTAAATGAATGAATGC 57.385 37.500 0.00 0.00 0.00 3.56
2881 3850 7.640852 CCTTCTCTCTGCTAAATGAATGAATG 58.359 38.462 0.00 0.00 0.00 2.67
2882 3851 6.262720 GCCTTCTCTCTGCTAAATGAATGAAT 59.737 38.462 0.00 0.00 0.00 2.57
2883 3852 5.587844 GCCTTCTCTCTGCTAAATGAATGAA 59.412 40.000 0.00 0.00 0.00 2.57
2884 3853 5.121811 GCCTTCTCTCTGCTAAATGAATGA 58.878 41.667 0.00 0.00 0.00 2.57
2885 3854 4.025061 CGCCTTCTCTCTGCTAAATGAATG 60.025 45.833 0.00 0.00 0.00 2.67
2886 3855 4.125703 CGCCTTCTCTCTGCTAAATGAAT 58.874 43.478 0.00 0.00 0.00 2.57
2887 3856 3.525537 CGCCTTCTCTCTGCTAAATGAA 58.474 45.455 0.00 0.00 0.00 2.57
2888 3857 2.159043 CCGCCTTCTCTCTGCTAAATGA 60.159 50.000 0.00 0.00 0.00 2.57
2889 3858 2.159043 TCCGCCTTCTCTCTGCTAAATG 60.159 50.000 0.00 0.00 0.00 2.32
2890 3859 2.111384 TCCGCCTTCTCTCTGCTAAAT 58.889 47.619 0.00 0.00 0.00 1.40
2891 3860 1.557099 TCCGCCTTCTCTCTGCTAAA 58.443 50.000 0.00 0.00 0.00 1.85
2892 3861 1.557099 TTCCGCCTTCTCTCTGCTAA 58.443 50.000 0.00 0.00 0.00 3.09
2893 3862 1.557099 TTTCCGCCTTCTCTCTGCTA 58.443 50.000 0.00 0.00 0.00 3.49
2894 3863 0.687354 TTTTCCGCCTTCTCTCTGCT 59.313 50.000 0.00 0.00 0.00 4.24
2895 3864 1.197949 GTTTTTCCGCCTTCTCTCTGC 59.802 52.381 0.00 0.00 0.00 4.26
2896 3865 2.494059 TGTTTTTCCGCCTTCTCTCTG 58.506 47.619 0.00 0.00 0.00 3.35
2897 3866 2.930826 TGTTTTTCCGCCTTCTCTCT 57.069 45.000 0.00 0.00 0.00 3.10
2898 3867 2.879026 ACTTGTTTTTCCGCCTTCTCTC 59.121 45.455 0.00 0.00 0.00 3.20
2899 3868 2.618709 CACTTGTTTTTCCGCCTTCTCT 59.381 45.455 0.00 0.00 0.00 3.10
2900 3869 2.357952 ACACTTGTTTTTCCGCCTTCTC 59.642 45.455 0.00 0.00 0.00 2.87
2901 3870 2.375146 ACACTTGTTTTTCCGCCTTCT 58.625 42.857 0.00 0.00 0.00 2.85
2902 3871 2.857748 CAACACTTGTTTTTCCGCCTTC 59.142 45.455 0.00 0.00 35.83 3.46
2903 3872 2.494073 TCAACACTTGTTTTTCCGCCTT 59.506 40.909 0.00 0.00 35.83 4.35
2904 3873 2.096248 TCAACACTTGTTTTTCCGCCT 58.904 42.857 0.00 0.00 35.83 5.52
2905 3874 2.570442 TCAACACTTGTTTTTCCGCC 57.430 45.000 0.00 0.00 35.83 6.13
2906 3875 3.701241 TGATCAACACTTGTTTTTCCGC 58.299 40.909 0.00 0.00 35.83 5.54
2907 3876 5.229887 CACTTGATCAACACTTGTTTTTCCG 59.770 40.000 3.38 0.00 35.83 4.30
2908 3877 6.329496 TCACTTGATCAACACTTGTTTTTCC 58.671 36.000 3.38 0.00 35.83 3.13
2909 3878 7.992180 ATCACTTGATCAACACTTGTTTTTC 57.008 32.000 3.38 0.00 35.83 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.