Multiple sequence alignment - TraesCS5D01G316500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G316500 chr5D 100.000 3122 0 0 1 3122 410345707 410348828 0.000000e+00 5766.0
1 TraesCS5D01G316500 chr5D 88.383 1076 106 10 1037 2097 410302764 410303835 0.000000e+00 1277.0
2 TraesCS5D01G316500 chr5D 78.571 518 93 12 1405 1913 410382347 410382855 3.000000e-85 326.0
3 TraesCS5D01G316500 chr5D 87.778 270 30 3 2851 3119 141425388 141425655 2.340000e-81 313.0
4 TraesCS5D01G316500 chr5D 73.778 839 179 30 1265 2080 410373194 410374014 3.050000e-75 292.0
5 TraesCS5D01G316500 chr5D 84.091 176 17 2 2643 2807 564008904 564009079 3.220000e-35 159.0
6 TraesCS5D01G316500 chr5D 84.024 169 21 3 2649 2814 548534306 548534141 1.160000e-34 158.0
7 TraesCS5D01G316500 chr5D 86.441 118 16 0 2647 2764 40186788 40186671 2.530000e-26 130.0
8 TraesCS5D01G316500 chr5D 89.831 59 6 0 2561 2619 210283494 210283552 3.340000e-10 76.8
9 TraesCS5D01G316500 chr5D 95.745 47 2 0 1264 1310 551093910 551093956 3.340000e-10 76.8
10 TraesCS5D01G316500 chr5D 90.566 53 5 0 2764 2816 487466437 487466385 1.550000e-08 71.3
11 TraesCS5D01G316500 chr5D 78.512 121 13 9 2700 2809 233721272 233721390 2.010000e-07 67.6
12 TraesCS5D01G316500 chr5B 92.919 2655 174 11 1 2649 492261894 492264540 0.000000e+00 3849.0
13 TraesCS5D01G316500 chr5B 86.267 1085 121 11 1037 2097 492256798 492257878 0.000000e+00 1153.0
14 TraesCS5D01G316500 chr5B 81.000 300 47 3 16 314 653810126 653810416 2.420000e-56 230.0
15 TraesCS5D01G316500 chr5B 75.146 515 107 16 18 518 669448936 669449443 4.050000e-54 222.0
16 TraesCS5D01G316500 chr5B 86.022 186 26 0 1034 1219 492373327 492373512 1.900000e-47 200.0
17 TraesCS5D01G316500 chr5B 72.334 694 135 33 1038 1684 492092750 492093433 6.930000e-37 165.0
18 TraesCS5D01G316500 chr5B 80.435 138 21 6 2099 2236 492258185 492258316 1.980000e-17 100.0
19 TraesCS5D01G316500 chr5B 95.745 47 2 0 1264 1310 699394661 699394707 3.340000e-10 76.8
20 TraesCS5D01G316500 chr5B 95.745 47 2 0 1264 1310 703507056 703507102 3.340000e-10 76.8
21 TraesCS5D01G316500 chr5B 90.385 52 5 0 2765 2816 395988416 395988365 5.590000e-08 69.4
22 TraesCS5D01G316500 chr5A 92.881 1784 97 15 621 2393 521768186 521769950 0.000000e+00 2564.0
23 TraesCS5D01G316500 chr5A 83.987 612 90 4 18 624 521767509 521768117 5.800000e-162 580.0
24 TraesCS5D01G316500 chr5A 86.347 271 34 3 2853 3122 222610291 222610023 3.050000e-75 292.0
25 TraesCS5D01G316500 chr5A 87.166 187 23 1 1033 1219 521797855 521798040 8.770000e-51 211.0
26 TraesCS5D01G316500 chr5A 73.554 242 54 9 303 541 413406312 413406546 2.000000e-12 84.2
27 TraesCS5D01G316500 chr5A 82.022 89 10 5 2561 2647 616144692 616144608 1.550000e-08 71.3
28 TraesCS5D01G316500 chr2D 79.427 593 115 7 16 605 14521839 14521251 2.240000e-111 412.0
29 TraesCS5D01G316500 chr2D 73.913 529 101 25 1037 1542 613237835 613237321 8.900000e-41 178.0
30 TraesCS5D01G316500 chr2D 85.311 177 13 10 2649 2816 589689733 589689905 1.490000e-38 171.0
31 TraesCS5D01G316500 chr2D 84.409 186 16 3 2643 2816 638404348 638404164 1.490000e-38 171.0
32 TraesCS5D01G316500 chr2D 87.395 119 15 0 2646 2764 599793428 599793546 1.510000e-28 137.0
33 TraesCS5D01G316500 chr2D 83.721 86 13 1 2562 2647 7839422 7839338 2.580000e-11 80.5
34 TraesCS5D01G316500 chr1D 88.476 269 29 2 2850 3117 481663541 481663808 1.080000e-84 324.0
35 TraesCS5D01G316500 chrUn 87.591 274 32 2 2850 3122 129566774 129566502 1.810000e-82 316.0
36 TraesCS5D01G316500 chr7D 87.546 273 33 1 2851 3122 446366341 446366069 6.500000e-82 315.0
37 TraesCS5D01G316500 chr7D 86.121 281 31 7 2848 3122 589451777 589451499 2.350000e-76 296.0
38 TraesCS5D01G316500 chr7D 74.091 440 109 4 24 462 173210575 173211010 3.200000e-40 176.0
39 TraesCS5D01G316500 chr7D 77.717 184 26 11 2644 2814 573381100 573380919 7.130000e-17 99.0
40 TraesCS5D01G316500 chr7D 74.074 162 29 11 2652 2806 2245829 2245674 2.000000e-03 54.7
41 TraesCS5D01G316500 chr3D 86.716 271 35 1 2850 3119 495217268 495217538 1.820000e-77 300.0
42 TraesCS5D01G316500 chr3B 86.397 272 34 3 2850 3119 187453847 187454117 8.470000e-76 294.0
43 TraesCS5D01G316500 chr3B 82.927 82 11 3 2550 2628 35063011 35062930 1.550000e-08 71.3
44 TraesCS5D01G316500 chr3B 82.927 82 11 3 2550 2628 35147361 35147280 1.550000e-08 71.3
45 TraesCS5D01G316500 chr3B 80.220 91 12 5 2560 2647 571887460 571887547 2.600000e-06 63.9
46 TraesCS5D01G316500 chr1A 78.261 460 95 4 14 472 460677669 460678124 1.100000e-74 291.0
47 TraesCS5D01G316500 chr1A 94.643 56 1 2 19 73 568530835 568530781 5.550000e-13 86.1
48 TraesCS5D01G316500 chr4D 86.029 272 35 3 2850 3119 8133295 8133565 3.940000e-74 289.0
49 TraesCS5D01G316500 chr3A 79.404 403 75 6 234 630 14685624 14685224 8.530000e-71 278.0
50 TraesCS5D01G316500 chr3A 77.745 337 67 5 216 546 689779243 689779577 1.900000e-47 200.0
51 TraesCS5D01G316500 chr2B 78.553 387 68 9 16 398 216712659 216713034 1.120000e-59 241.0
52 TraesCS5D01G316500 chr2B 88.276 145 15 2 1034 1177 748703398 748703541 4.140000e-39 172.0
53 TraesCS5D01G316500 chr4A 78.142 366 76 2 109 473 710173726 710174088 2.420000e-56 230.0
54 TraesCS5D01G316500 chr4A 79.167 96 18 2 447 541 732800320 732800414 7.230000e-07 65.8
55 TraesCS5D01G316500 chr7B 82.063 223 30 7 1034 1254 538050850 538050636 6.880000e-42 182.0
56 TraesCS5D01G316500 chr7B 84.393 173 16 7 2646 2807 723961973 723961801 3.220000e-35 159.0
57 TraesCS5D01G316500 chr6D 81.714 175 22 4 2642 2806 386895112 386895286 1.510000e-28 137.0
58 TraesCS5D01G316500 chr6D 86.441 118 15 1 2647 2764 412011137 412011253 9.090000e-26 128.0
59 TraesCS5D01G316500 chr6D 91.781 73 4 2 565 637 448631940 448632010 1.980000e-17 100.0
60 TraesCS5D01G316500 chr6D 81.111 90 12 4 2560 2647 12677226 12677140 2.010000e-07 67.6
61 TraesCS5D01G316500 chr6B 81.503 173 21 3 2646 2807 671017974 671018146 7.030000e-27 132.0
62 TraesCS5D01G316500 chr1B 92.308 65 2 3 19 81 659543418 659543355 4.290000e-14 89.8
63 TraesCS5D01G316500 chr1B 76.744 172 29 5 2646 2806 52895968 52896139 5.550000e-13 86.1
64 TraesCS5D01G316500 chr4B 82.500 80 13 1 2562 2640 576165978 576166057 5.590000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G316500 chr5D 410345707 410348828 3121 False 5766.000000 5766 100.000000 1 3122 1 chr5D.!!$F5 3121
1 TraesCS5D01G316500 chr5D 410302764 410303835 1071 False 1277.000000 1277 88.383000 1037 2097 1 chr5D.!!$F4 1060
2 TraesCS5D01G316500 chr5D 410382347 410382855 508 False 326.000000 326 78.571000 1405 1913 1 chr5D.!!$F7 508
3 TraesCS5D01G316500 chr5D 410373194 410374014 820 False 292.000000 292 73.778000 1265 2080 1 chr5D.!!$F6 815
4 TraesCS5D01G316500 chr5B 492256798 492264540 7742 False 1700.666667 3849 86.540333 1 2649 3 chr5B.!!$F7 2648
5 TraesCS5D01G316500 chr5B 669448936 669449443 507 False 222.000000 222 75.146000 18 518 1 chr5B.!!$F4 500
6 TraesCS5D01G316500 chr5A 521767509 521769950 2441 False 1572.000000 2564 88.434000 18 2393 2 chr5A.!!$F3 2375
7 TraesCS5D01G316500 chr2D 14521251 14521839 588 True 412.000000 412 79.427000 16 605 1 chr2D.!!$R2 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 5593 0.109723 ACTAACCAAAGCGGAGGCAA 59.890 50.0 0.0 0.0 43.41 4.52 F
758 5948 0.179163 GCCGTTCTTGCCATGTAAGC 60.179 55.0 0.0 0.0 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 6514 0.322546 GGTTGACCAGGGTGATGTCC 60.323 60.0 0.00 0.0 35.64 4.02 R
2733 7960 0.041312 CCGTTTGAGGCGTCTGTTTG 60.041 55.0 8.06 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 5188 1.608055 TCTTAGACCACCGAACGACA 58.392 50.000 0.00 0.00 0.00 4.35
174 5272 1.152525 ACCCCGTCGATGATAGCCT 60.153 57.895 6.11 0.00 0.00 4.58
215 5313 1.621814 CCCTAAGGACCAACGTTCTGA 59.378 52.381 0.00 0.00 33.47 3.27
226 5324 1.664649 CGTTCTGAAGCCGCAGTCA 60.665 57.895 3.66 0.00 37.20 3.41
285 5392 6.179040 TGACACCAAATATCATCACATGACA 58.821 36.000 0.00 0.00 43.01 3.58
304 5411 4.597507 TGACAAGAAATCCTAACCTCACCT 59.402 41.667 0.00 0.00 0.00 4.00
351 5458 2.109126 GGAGCTCCGTCAACCATGC 61.109 63.158 19.06 0.00 0.00 4.06
354 5461 2.819595 CTCCGTCAACCATGCCCG 60.820 66.667 0.00 0.00 0.00 6.13
367 5474 2.511600 GCCCGGATGGACGAACTG 60.512 66.667 0.73 0.00 37.49 3.16
417 5524 5.440610 ACTCAAAGAAGAAGTGTCACCATT 58.559 37.500 0.00 0.00 0.00 3.16
484 5593 0.109723 ACTAACCAAAGCGGAGGCAA 59.890 50.000 0.00 0.00 43.41 4.52
506 5615 2.285368 ATTCCCCTCCTCGCCACA 60.285 61.111 0.00 0.00 0.00 4.17
544 5653 1.767759 CAAAGGGGAGGCGAATTCAT 58.232 50.000 6.22 0.00 0.00 2.57
546 5655 0.918983 AAGGGGAGGCGAATTCATGA 59.081 50.000 6.22 0.00 0.00 3.07
551 5660 2.224378 GGGAGGCGAATTCATGATCTCA 60.224 50.000 6.22 0.00 0.00 3.27
559 5668 2.299993 TTCATGATCTCACCAGCGAC 57.700 50.000 0.00 0.00 0.00 5.19
645 5832 2.423538 GGTTCTCAACTTTGTGCACTGT 59.576 45.455 19.41 11.31 0.00 3.55
714 5903 3.737559 AAGAACATGTTATGCCTCCCA 57.262 42.857 11.95 0.00 0.00 4.37
756 5946 1.832883 ATGCCGTTCTTGCCATGTAA 58.167 45.000 0.00 0.00 0.00 2.41
757 5947 1.164411 TGCCGTTCTTGCCATGTAAG 58.836 50.000 0.00 0.00 0.00 2.34
758 5948 0.179163 GCCGTTCTTGCCATGTAAGC 60.179 55.000 0.00 0.00 0.00 3.09
759 5949 1.453155 CCGTTCTTGCCATGTAAGCT 58.547 50.000 0.00 0.00 0.00 3.74
760 5950 1.131126 CCGTTCTTGCCATGTAAGCTG 59.869 52.381 0.00 0.00 0.00 4.24
763 5953 1.167851 TCTTGCCATGTAAGCTGTGC 58.832 50.000 0.00 0.00 0.00 4.57
764 5954 0.883153 CTTGCCATGTAAGCTGTGCA 59.117 50.000 0.00 0.00 0.00 4.57
829 6019 2.713770 GCGCGTCGATCTGGACTA 59.286 61.111 8.43 0.00 34.75 2.59
830 6020 1.369448 GCGCGTCGATCTGGACTAG 60.369 63.158 8.43 0.00 34.75 2.57
958 6148 1.032794 CAGTAGGGCTCGTATCTGCA 58.967 55.000 0.00 0.00 0.00 4.41
1344 6546 0.257328 TGGTCAACCCAGCAACAAGA 59.743 50.000 0.00 0.00 38.72 3.02
1440 6651 0.390735 ACAACTTCGCGTACCATCCC 60.391 55.000 5.77 0.00 0.00 3.85
1492 6703 3.056328 GCAGCTTCAACCGGGTCC 61.056 66.667 6.32 0.00 0.00 4.46
1524 6741 2.045926 GTGCTCACGCTTGGGGAT 60.046 61.111 0.00 0.00 36.97 3.85
1690 6910 2.105128 CCGTCTCCGCCACATCTC 59.895 66.667 0.00 0.00 0.00 2.75
1858 7078 0.617935 TCCCATGCACGAGATTCCAA 59.382 50.000 0.00 0.00 0.00 3.53
2056 7276 4.713854 TTTAACTACCGAACGTTTGCTC 57.286 40.909 10.22 0.00 0.00 4.26
2177 7397 2.767566 GCGCATGCAATTTGTTGTAC 57.232 45.000 19.57 0.00 42.15 2.90
2178 7398 2.057316 GCGCATGCAATTTGTTGTACA 58.943 42.857 19.57 0.00 42.15 2.90
2179 7399 2.474359 GCGCATGCAATTTGTTGTACAA 59.526 40.909 19.57 3.59 42.15 2.41
2180 7400 3.060003 GCGCATGCAATTTGTTGTACAAA 60.060 39.130 19.57 7.37 45.54 2.83
2421 7646 4.964593 ACAGGCTTTGCTCAAATTTTGAT 58.035 34.783 12.04 0.00 39.30 2.57
2432 7657 9.874205 TTGCTCAAATTTTGATAATTCCCTTAG 57.126 29.630 12.04 0.00 39.30 2.18
2451 7676 6.860023 CCCTTAGTTTAACTATACATCGTCCG 59.140 42.308 5.60 0.00 29.64 4.79
2459 7684 9.445878 TTTAACTATACATCGTCCGATATCTCT 57.554 33.333 1.31 0.00 32.93 3.10
2472 7697 7.308049 CGTCCGATATCTCTCTCTTGTATTCAA 60.308 40.741 0.34 0.00 0.00 2.69
2489 7714 8.203937 TGTATTCAATATACCAAAGTCAACCG 57.796 34.615 0.00 0.00 0.00 4.44
2497 7722 6.920569 ATACCAAAGTCAACCGATATGAAC 57.079 37.500 0.00 0.00 0.00 3.18
2499 7724 4.261801 CCAAAGTCAACCGATATGAACCT 58.738 43.478 0.00 0.00 0.00 3.50
2509 7734 7.234782 TCAACCGATATGAACCTTATACCAGAT 59.765 37.037 0.00 0.00 0.00 2.90
2534 7759 4.385358 TTGAACCTTGAAGGAAGCAAAC 57.615 40.909 19.83 1.78 37.67 2.93
2535 7760 3.360867 TGAACCTTGAAGGAAGCAAACA 58.639 40.909 19.83 4.26 37.67 2.83
2538 7763 4.123497 ACCTTGAAGGAAGCAAACAAAC 57.877 40.909 19.83 0.00 37.67 2.93
2539 7764 3.513515 ACCTTGAAGGAAGCAAACAAACA 59.486 39.130 19.83 0.00 37.67 2.83
2540 7765 4.114794 CCTTGAAGGAAGCAAACAAACAG 58.885 43.478 4.95 0.00 37.67 3.16
2541 7766 4.381932 CCTTGAAGGAAGCAAACAAACAGT 60.382 41.667 4.95 0.00 37.67 3.55
2542 7767 5.163561 CCTTGAAGGAAGCAAACAAACAGTA 60.164 40.000 4.95 0.00 37.67 2.74
2564 7790 9.764363 CAGTAGCACTTTACATAATCCATAGAA 57.236 33.333 0.00 0.00 0.00 2.10
2589 7815 5.941948 AAGTATGTTTTTCGTCCCTCAAG 57.058 39.130 0.00 0.00 0.00 3.02
2596 7822 1.034356 TTCGTCCCTCAAGTTCACGA 58.966 50.000 0.00 0.00 37.69 4.35
2611 7837 4.686554 AGTTCACGAGAAGTAGACATTTGC 59.313 41.667 0.68 0.00 35.67 3.68
2649 7876 6.897259 TTTCGTCGACATTTTATCCCTTAG 57.103 37.500 17.16 0.00 0.00 2.18
2650 7877 5.840243 TCGTCGACATTTTATCCCTTAGA 57.160 39.130 17.16 0.00 0.00 2.10
2651 7878 5.828747 TCGTCGACATTTTATCCCTTAGAG 58.171 41.667 17.16 0.00 0.00 2.43
2652 7879 4.444720 CGTCGACATTTTATCCCTTAGAGC 59.555 45.833 17.16 0.00 0.00 4.09
2653 7880 5.357257 GTCGACATTTTATCCCTTAGAGCA 58.643 41.667 11.55 0.00 0.00 4.26
2654 7881 5.992217 GTCGACATTTTATCCCTTAGAGCAT 59.008 40.000 11.55 0.00 0.00 3.79
2655 7882 6.146347 GTCGACATTTTATCCCTTAGAGCATC 59.854 42.308 11.55 0.00 0.00 3.91
2666 7893 2.280457 GAGCATCTACAGCCGGGC 60.280 66.667 12.11 12.11 0.00 6.13
2667 7894 4.227134 AGCATCTACAGCCGGGCG 62.227 66.667 14.39 11.21 0.00 6.13
2683 7910 4.778143 CGCCCCAAACCCTCCTCG 62.778 72.222 0.00 0.00 0.00 4.63
2684 7911 3.327404 GCCCCAAACCCTCCTCGA 61.327 66.667 0.00 0.00 0.00 4.04
2685 7912 2.902457 GCCCCAAACCCTCCTCGAA 61.902 63.158 0.00 0.00 0.00 3.71
2686 7913 1.002502 CCCCAAACCCTCCTCGAAC 60.003 63.158 0.00 0.00 0.00 3.95
2687 7914 1.375523 CCCAAACCCTCCTCGAACG 60.376 63.158 0.00 0.00 0.00 3.95
2688 7915 2.033194 CCAAACCCTCCTCGAACGC 61.033 63.158 0.00 0.00 0.00 4.84
2689 7916 2.033194 CAAACCCTCCTCGAACGCC 61.033 63.158 0.00 0.00 0.00 5.68
2690 7917 3.249837 AAACCCTCCTCGAACGCCC 62.250 63.158 0.00 0.00 0.00 6.13
2713 7940 4.736896 GTCCGCCCGGTCACTGAC 62.737 72.222 6.61 0.00 36.47 3.51
2721 7948 4.598257 GGTCACTGACCGGTCATG 57.402 61.111 36.21 30.88 43.14 3.07
2722 7949 1.972198 GGTCACTGACCGGTCATGA 59.028 57.895 36.21 32.31 43.14 3.07
2723 7950 0.537188 GGTCACTGACCGGTCATGAT 59.463 55.000 36.21 22.06 43.14 2.45
2724 7951 1.066143 GGTCACTGACCGGTCATGATT 60.066 52.381 36.21 18.51 43.14 2.57
2725 7952 2.615493 GGTCACTGACCGGTCATGATTT 60.615 50.000 36.21 16.05 43.14 2.17
2726 7953 3.074412 GTCACTGACCGGTCATGATTTT 58.926 45.455 36.21 14.32 39.13 1.82
2727 7954 3.502211 GTCACTGACCGGTCATGATTTTT 59.498 43.478 36.21 12.62 39.13 1.94
2728 7955 3.751175 TCACTGACCGGTCATGATTTTTC 59.249 43.478 36.21 6.70 39.13 2.29
2729 7956 3.501828 CACTGACCGGTCATGATTTTTCA 59.498 43.478 36.21 11.36 39.13 2.69
2730 7957 4.023279 CACTGACCGGTCATGATTTTTCAA 60.023 41.667 36.21 10.15 39.13 2.69
2731 7958 4.023193 ACTGACCGGTCATGATTTTTCAAC 60.023 41.667 36.21 5.42 39.13 3.18
2732 7959 4.141287 TGACCGGTCATGATTTTTCAACT 58.859 39.130 33.23 0.00 34.14 3.16
2733 7960 4.215399 TGACCGGTCATGATTTTTCAACTC 59.785 41.667 33.23 1.77 34.14 3.01
2734 7961 4.141287 ACCGGTCATGATTTTTCAACTCA 58.859 39.130 0.00 0.00 0.00 3.41
2735 7962 4.582656 ACCGGTCATGATTTTTCAACTCAA 59.417 37.500 0.00 0.00 0.00 3.02
2736 7963 5.068460 ACCGGTCATGATTTTTCAACTCAAA 59.932 36.000 0.00 0.00 0.00 2.69
2737 7964 5.402270 CCGGTCATGATTTTTCAACTCAAAC 59.598 40.000 0.00 0.00 0.00 2.93
2738 7965 5.976534 CGGTCATGATTTTTCAACTCAAACA 59.023 36.000 0.00 0.00 0.00 2.83
2739 7966 6.142798 CGGTCATGATTTTTCAACTCAAACAG 59.857 38.462 0.00 0.00 0.00 3.16
2740 7967 7.202526 GGTCATGATTTTTCAACTCAAACAGA 58.797 34.615 0.00 0.00 0.00 3.41
2741 7968 7.168135 GGTCATGATTTTTCAACTCAAACAGAC 59.832 37.037 0.00 0.00 0.00 3.51
2742 7969 6.912051 TCATGATTTTTCAACTCAAACAGACG 59.088 34.615 0.00 0.00 0.00 4.18
2743 7970 5.034152 TGATTTTTCAACTCAAACAGACGC 58.966 37.500 0.00 0.00 0.00 5.19
2744 7971 3.414549 TTTTCAACTCAAACAGACGCC 57.585 42.857 0.00 0.00 0.00 5.68
2745 7972 2.325583 TTCAACTCAAACAGACGCCT 57.674 45.000 0.00 0.00 0.00 5.52
2746 7973 1.865865 TCAACTCAAACAGACGCCTC 58.134 50.000 0.00 0.00 0.00 4.70
2747 7974 1.138069 TCAACTCAAACAGACGCCTCA 59.862 47.619 0.00 0.00 0.00 3.86
2748 7975 1.939934 CAACTCAAACAGACGCCTCAA 59.060 47.619 0.00 0.00 0.00 3.02
2749 7976 2.325583 ACTCAAACAGACGCCTCAAA 57.674 45.000 0.00 0.00 0.00 2.69
2750 7977 1.940613 ACTCAAACAGACGCCTCAAAC 59.059 47.619 0.00 0.00 0.00 2.93
2751 7978 0.934496 TCAAACAGACGCCTCAAACG 59.066 50.000 0.00 0.00 0.00 3.60
2752 7979 0.041312 CAAACAGACGCCTCAAACGG 60.041 55.000 0.00 0.00 34.00 4.44
2753 7980 1.164041 AAACAGACGCCTCAAACGGG 61.164 55.000 0.00 0.00 34.00 5.28
2754 7981 2.030562 CAGACGCCTCAAACGGGT 59.969 61.111 0.00 0.00 34.00 5.28
2755 7982 2.027625 CAGACGCCTCAAACGGGTC 61.028 63.158 0.00 0.00 41.98 4.46
2756 7983 2.207924 AGACGCCTCAAACGGGTCT 61.208 57.895 2.08 2.08 45.58 3.85
2757 7984 1.737008 GACGCCTCAAACGGGTCTC 60.737 63.158 0.00 0.00 39.41 3.36
2758 7985 2.342279 CGCCTCAAACGGGTCTCA 59.658 61.111 0.00 0.00 0.00 3.27
2759 7986 1.301401 CGCCTCAAACGGGTCTCAA 60.301 57.895 0.00 0.00 0.00 3.02
2760 7987 0.882927 CGCCTCAAACGGGTCTCAAA 60.883 55.000 0.00 0.00 0.00 2.69
2761 7988 0.591659 GCCTCAAACGGGTCTCAAAC 59.408 55.000 0.00 0.00 0.00 2.93
2762 7989 0.865769 CCTCAAACGGGTCTCAAACG 59.134 55.000 0.00 0.00 0.00 3.60
2763 7990 0.234884 CTCAAACGGGTCTCAAACGC 59.765 55.000 0.00 0.00 37.46 4.84
2768 7995 3.723348 GGGTCTCAAACGCGGCAC 61.723 66.667 12.47 0.00 0.00 5.01
2769 7996 3.723348 GGTCTCAAACGCGGCACC 61.723 66.667 12.47 2.70 0.00 5.01
2770 7997 3.723348 GTCTCAAACGCGGCACCC 61.723 66.667 12.47 0.00 0.00 4.61
2775 8002 4.344865 AAACGCGGCACCCCTCAT 62.345 61.111 12.47 0.00 0.00 2.90
2776 8003 4.778143 AACGCGGCACCCCTCATC 62.778 66.667 12.47 0.00 0.00 2.92
2778 8005 4.899239 CGCGGCACCCCTCATCTC 62.899 72.222 0.00 0.00 0.00 2.75
2779 8006 3.474570 GCGGCACCCCTCATCTCT 61.475 66.667 0.00 0.00 0.00 3.10
2780 8007 2.134287 GCGGCACCCCTCATCTCTA 61.134 63.158 0.00 0.00 0.00 2.43
2781 8008 2.045280 CGGCACCCCTCATCTCTAG 58.955 63.158 0.00 0.00 0.00 2.43
2782 8009 1.751563 GGCACCCCTCATCTCTAGC 59.248 63.158 0.00 0.00 0.00 3.42
2783 8010 1.751563 GCACCCCTCATCTCTAGCC 59.248 63.158 0.00 0.00 0.00 3.93
2784 8011 1.763546 GCACCCCTCATCTCTAGCCC 61.764 65.000 0.00 0.00 0.00 5.19
2785 8012 0.399091 CACCCCTCATCTCTAGCCCA 60.399 60.000 0.00 0.00 0.00 5.36
2786 8013 0.343372 ACCCCTCATCTCTAGCCCAA 59.657 55.000 0.00 0.00 0.00 4.12
2787 8014 1.274416 ACCCCTCATCTCTAGCCCAAA 60.274 52.381 0.00 0.00 0.00 3.28
2788 8015 2.061061 CCCCTCATCTCTAGCCCAAAT 58.939 52.381 0.00 0.00 0.00 2.32
2789 8016 3.251484 CCCCTCATCTCTAGCCCAAATA 58.749 50.000 0.00 0.00 0.00 1.40
2790 8017 3.848975 CCCCTCATCTCTAGCCCAAATAT 59.151 47.826 0.00 0.00 0.00 1.28
2791 8018 4.324099 CCCCTCATCTCTAGCCCAAATATG 60.324 50.000 0.00 0.00 0.00 1.78
2792 8019 4.533707 CCCTCATCTCTAGCCCAAATATGA 59.466 45.833 0.00 0.00 0.00 2.15
2793 8020 5.338219 CCCTCATCTCTAGCCCAAATATGAG 60.338 48.000 0.00 0.00 38.90 2.90
2794 8021 5.732633 CTCATCTCTAGCCCAAATATGAGG 58.267 45.833 0.00 0.00 36.70 3.86
2795 8022 4.019860 TCATCTCTAGCCCAAATATGAGGC 60.020 45.833 3.28 3.28 40.91 4.70
2796 8023 2.300152 TCTCTAGCCCAAATATGAGGCG 59.700 50.000 5.52 0.00 43.56 5.52
2797 8024 1.347707 TCTAGCCCAAATATGAGGCGG 59.652 52.381 5.52 3.96 43.56 6.13
2798 8025 1.347707 CTAGCCCAAATATGAGGCGGA 59.652 52.381 5.52 0.00 43.56 5.54
2799 8026 0.773644 AGCCCAAATATGAGGCGGAT 59.226 50.000 5.52 0.00 43.56 4.18
2800 8027 1.985159 AGCCCAAATATGAGGCGGATA 59.015 47.619 5.52 0.00 43.56 2.59
2801 8028 2.578021 AGCCCAAATATGAGGCGGATAT 59.422 45.455 5.52 0.00 43.56 1.63
2802 8029 2.684881 GCCCAAATATGAGGCGGATATG 59.315 50.000 0.00 0.00 34.59 1.78
2803 8030 3.282021 CCCAAATATGAGGCGGATATGG 58.718 50.000 0.00 0.00 0.00 2.74
2804 8031 3.282021 CCAAATATGAGGCGGATATGGG 58.718 50.000 0.00 0.00 0.00 4.00
2805 8032 3.282021 CAAATATGAGGCGGATATGGGG 58.718 50.000 0.00 0.00 0.00 4.96
2806 8033 1.511613 ATATGAGGCGGATATGGGGG 58.488 55.000 0.00 0.00 0.00 5.40
2807 8034 0.415830 TATGAGGCGGATATGGGGGA 59.584 55.000 0.00 0.00 0.00 4.81
2808 8035 0.475632 ATGAGGCGGATATGGGGGAA 60.476 55.000 0.00 0.00 0.00 3.97
2809 8036 1.375326 GAGGCGGATATGGGGGAAC 59.625 63.158 0.00 0.00 0.00 3.62
2822 8049 2.361230 GGAACCCGGGCTTTGAGG 60.361 66.667 24.08 0.00 0.00 3.86
2826 8053 4.740822 CCCGGGCTTTGAGGGTGG 62.741 72.222 8.08 0.00 40.27 4.61
2827 8054 3.966543 CCGGGCTTTGAGGGTGGT 61.967 66.667 0.00 0.00 0.00 4.16
2828 8055 2.359975 CGGGCTTTGAGGGTGGTC 60.360 66.667 0.00 0.00 0.00 4.02
2829 8056 2.035783 GGGCTTTGAGGGTGGTCC 59.964 66.667 0.00 0.00 0.00 4.46
2839 8066 3.916184 GGTGGTCCCCCTTTCTCA 58.084 61.111 0.00 0.00 0.00 3.27
2840 8067 2.160646 GGTGGTCCCCCTTTCTCAA 58.839 57.895 0.00 0.00 0.00 3.02
2841 8068 0.038310 GGTGGTCCCCCTTTCTCAAG 59.962 60.000 0.00 0.00 0.00 3.02
2842 8069 0.771755 GTGGTCCCCCTTTCTCAAGT 59.228 55.000 0.00 0.00 0.00 3.16
2843 8070 1.982958 GTGGTCCCCCTTTCTCAAGTA 59.017 52.381 0.00 0.00 0.00 2.24
2844 8071 2.374170 GTGGTCCCCCTTTCTCAAGTAA 59.626 50.000 0.00 0.00 0.00 2.24
2845 8072 3.057586 TGGTCCCCCTTTCTCAAGTAAA 58.942 45.455 0.00 0.00 0.00 2.01
2846 8073 3.464080 TGGTCCCCCTTTCTCAAGTAAAA 59.536 43.478 0.00 0.00 0.00 1.52
2847 8074 4.079970 GGTCCCCCTTTCTCAAGTAAAAG 58.920 47.826 0.00 0.00 33.26 2.27
2848 8075 3.506455 GTCCCCCTTTCTCAAGTAAAAGC 59.494 47.826 0.00 0.00 32.34 3.51
2849 8076 2.488153 CCCCCTTTCTCAAGTAAAAGCG 59.512 50.000 0.00 0.00 32.34 4.68
2850 8077 2.095212 CCCCTTTCTCAAGTAAAAGCGC 60.095 50.000 0.00 0.00 32.34 5.92
2851 8078 2.412847 CCCTTTCTCAAGTAAAAGCGCG 60.413 50.000 0.00 0.00 32.34 6.86
2852 8079 2.234187 CTTTCTCAAGTAAAAGCGCGC 58.766 47.619 26.66 26.66 0.00 6.86
2853 8080 0.515564 TTCTCAAGTAAAAGCGCGCC 59.484 50.000 30.33 12.43 0.00 6.53
2854 8081 1.134694 CTCAAGTAAAAGCGCGCCC 59.865 57.895 30.33 10.90 0.00 6.13
2855 8082 2.202298 CAAGTAAAAGCGCGCCCG 60.202 61.111 30.33 3.20 37.57 6.13
2856 8083 3.428282 AAGTAAAAGCGCGCCCGG 61.428 61.111 30.33 0.00 34.32 5.73
2888 8115 2.605295 TCGGACCCGACCCATGTT 60.605 61.111 7.11 0.00 44.01 2.71
2889 8116 2.435938 CGGACCCGACCCATGTTG 60.436 66.667 1.54 0.00 42.83 3.33
2890 8117 2.045340 GGACCCGACCCATGTTGG 60.045 66.667 0.00 0.00 44.65 3.77
2891 8118 2.750237 GACCCGACCCATGTTGGC 60.750 66.667 0.00 0.00 43.82 4.52
2892 8119 4.360405 ACCCGACCCATGTTGGCC 62.360 66.667 0.00 0.00 43.82 5.36
2894 8121 4.358841 CCGACCCATGTTGGCCCA 62.359 66.667 0.00 0.00 39.21 5.36
2895 8122 3.061848 CGACCCATGTTGGCCCAC 61.062 66.667 0.00 0.00 35.79 4.61
2896 8123 2.679996 GACCCATGTTGGCCCACC 60.680 66.667 4.19 0.00 35.79 4.61
2897 8124 4.315264 ACCCATGTTGGCCCACCC 62.315 66.667 4.19 0.00 35.79 4.61
2899 8126 4.358841 CCATGTTGGCCCACCCGA 62.359 66.667 4.19 0.00 35.87 5.14
2900 8127 3.061848 CATGTTGGCCCACCCGAC 61.062 66.667 4.19 0.00 46.70 4.79
2901 8128 4.360405 ATGTTGGCCCACCCGACC 62.360 66.667 4.19 0.00 46.06 4.79
2908 8135 2.689402 CCCACCCGACCCCACATA 60.689 66.667 0.00 0.00 0.00 2.29
2909 8136 2.076184 CCCACCCGACCCCACATAT 61.076 63.158 0.00 0.00 0.00 1.78
2910 8137 0.765135 CCCACCCGACCCCACATATA 60.765 60.000 0.00 0.00 0.00 0.86
2911 8138 1.358152 CCACCCGACCCCACATATAT 58.642 55.000 0.00 0.00 0.00 0.86
2912 8139 1.278127 CCACCCGACCCCACATATATC 59.722 57.143 0.00 0.00 0.00 1.63
2913 8140 1.278127 CACCCGACCCCACATATATCC 59.722 57.143 0.00 0.00 0.00 2.59
2914 8141 1.132657 ACCCGACCCCACATATATCCA 60.133 52.381 0.00 0.00 0.00 3.41
2915 8142 2.196595 CCCGACCCCACATATATCCAT 58.803 52.381 0.00 0.00 0.00 3.41
2916 8143 2.170607 CCCGACCCCACATATATCCATC 59.829 54.545 0.00 0.00 0.00 3.51
2917 8144 2.170607 CCGACCCCACATATATCCATCC 59.829 54.545 0.00 0.00 0.00 3.51
2918 8145 2.170607 CGACCCCACATATATCCATCCC 59.829 54.545 0.00 0.00 0.00 3.85
2919 8146 2.509964 GACCCCACATATATCCATCCCC 59.490 54.545 0.00 0.00 0.00 4.81
2920 8147 2.157707 ACCCCACATATATCCATCCCCA 60.158 50.000 0.00 0.00 0.00 4.96
2921 8148 3.133665 CCCCACATATATCCATCCCCAT 58.866 50.000 0.00 0.00 0.00 4.00
2922 8149 3.139025 CCCCACATATATCCATCCCCATC 59.861 52.174 0.00 0.00 0.00 3.51
2923 8150 3.139025 CCCACATATATCCATCCCCATCC 59.861 52.174 0.00 0.00 0.00 3.51
2924 8151 3.181451 CCACATATATCCATCCCCATCCG 60.181 52.174 0.00 0.00 0.00 4.18
2925 8152 2.439507 ACATATATCCATCCCCATCCGC 59.560 50.000 0.00 0.00 0.00 5.54
2926 8153 2.568546 TATATCCATCCCCATCCGCT 57.431 50.000 0.00 0.00 0.00 5.52
2927 8154 1.207791 ATATCCATCCCCATCCGCTC 58.792 55.000 0.00 0.00 0.00 5.03
2928 8155 1.257750 TATCCATCCCCATCCGCTCG 61.258 60.000 0.00 0.00 0.00 5.03
2929 8156 3.550431 CCATCCCCATCCGCTCGT 61.550 66.667 0.00 0.00 0.00 4.18
2930 8157 2.029666 CATCCCCATCCGCTCGTC 59.970 66.667 0.00 0.00 0.00 4.20
2931 8158 3.606662 ATCCCCATCCGCTCGTCG 61.607 66.667 0.00 0.00 38.08 5.12
2940 8167 3.110178 CGCTCGTCGGACAAACCC 61.110 66.667 9.10 0.00 34.64 4.11
2948 8175 2.430367 GGACAAACCCGAGCCACT 59.570 61.111 0.00 0.00 0.00 4.00
2949 8176 1.228154 GGACAAACCCGAGCCACTT 60.228 57.895 0.00 0.00 0.00 3.16
2950 8177 1.235281 GGACAAACCCGAGCCACTTC 61.235 60.000 0.00 0.00 0.00 3.01
2951 8178 0.534203 GACAAACCCGAGCCACTTCA 60.534 55.000 0.00 0.00 0.00 3.02
2952 8179 0.818040 ACAAACCCGAGCCACTTCAC 60.818 55.000 0.00 0.00 0.00 3.18
2953 8180 0.535102 CAAACCCGAGCCACTTCACT 60.535 55.000 0.00 0.00 0.00 3.41
2954 8181 0.250338 AAACCCGAGCCACTTCACTC 60.250 55.000 0.00 0.00 0.00 3.51
2955 8182 2.113243 AACCCGAGCCACTTCACTCC 62.113 60.000 0.00 0.00 0.00 3.85
2956 8183 2.583441 CCCGAGCCACTTCACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
2957 8184 1.374758 CCGAGCCACTTCACTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
2958 8185 1.668294 CGAGCCACTTCACTCCACT 59.332 57.895 0.00 0.00 0.00 4.00
2959 8186 0.389166 CGAGCCACTTCACTCCACTC 60.389 60.000 0.00 0.00 0.00 3.51
2960 8187 0.036858 GAGCCACTTCACTCCACTCC 60.037 60.000 0.00 0.00 0.00 3.85
2961 8188 1.003233 GCCACTTCACTCCACTCCC 60.003 63.158 0.00 0.00 0.00 4.30
2962 8189 1.679898 CCACTTCACTCCACTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
2963 8190 0.838122 CCACTTCACTCCACTCCCCT 60.838 60.000 0.00 0.00 0.00 4.79
2964 8191 0.610687 CACTTCACTCCACTCCCCTC 59.389 60.000 0.00 0.00 0.00 4.30
2965 8192 0.545548 ACTTCACTCCACTCCCCTCC 60.546 60.000 0.00 0.00 0.00 4.30
2966 8193 1.608717 CTTCACTCCACTCCCCTCCG 61.609 65.000 0.00 0.00 0.00 4.63
2967 8194 3.775654 CACTCCACTCCCCTCCGC 61.776 72.222 0.00 0.00 0.00 5.54
2983 8210 4.459089 GCCACCCGAGCTCACCTC 62.459 72.222 15.40 0.00 37.22 3.85
2984 8211 3.775654 CCACCCGAGCTCACCTCC 61.776 72.222 15.40 0.00 37.27 4.30
2985 8212 4.135153 CACCCGAGCTCACCTCCG 62.135 72.222 15.40 0.00 37.27 4.63
3004 8231 2.442272 CGGGGTCCGGTCATCTCT 60.442 66.667 0.00 0.00 44.15 3.10
3005 8232 2.786495 CGGGGTCCGGTCATCTCTG 61.786 68.421 0.00 0.00 44.15 3.35
3006 8233 2.435693 GGGGTCCGGTCATCTCTGG 61.436 68.421 0.00 0.00 35.33 3.86
3007 8234 2.501610 GGTCCGGTCATCTCTGGC 59.498 66.667 0.00 0.00 34.12 4.85
3008 8235 2.359169 GGTCCGGTCATCTCTGGCA 61.359 63.158 0.00 0.00 34.12 4.92
3009 8236 1.690219 GGTCCGGTCATCTCTGGCAT 61.690 60.000 0.00 0.00 34.12 4.40
3010 8237 1.040646 GTCCGGTCATCTCTGGCATA 58.959 55.000 0.00 0.00 34.12 3.14
3011 8238 1.000283 GTCCGGTCATCTCTGGCATAG 60.000 57.143 0.00 0.00 34.12 2.23
3012 8239 0.320247 CCGGTCATCTCTGGCATAGC 60.320 60.000 0.00 0.00 0.00 2.97
3013 8240 0.390492 CGGTCATCTCTGGCATAGCA 59.610 55.000 0.00 0.00 0.00 3.49
3014 8241 1.604947 CGGTCATCTCTGGCATAGCAG 60.605 57.143 0.00 0.00 0.00 4.24
3015 8242 1.270732 GGTCATCTCTGGCATAGCAGG 60.271 57.143 0.00 0.00 0.00 4.85
3016 8243 0.395686 TCATCTCTGGCATAGCAGGC 59.604 55.000 0.00 0.00 0.00 4.85
3017 8244 0.108019 CATCTCTGGCATAGCAGGCA 59.892 55.000 0.00 0.56 42.25 4.75
3029 8256 3.071580 GCAGGCAGCGATTCTAACT 57.928 52.632 0.00 0.00 0.00 2.24
3030 8257 0.933796 GCAGGCAGCGATTCTAACTC 59.066 55.000 0.00 0.00 0.00 3.01
3031 8258 1.576356 CAGGCAGCGATTCTAACTCC 58.424 55.000 0.00 0.00 0.00 3.85
3032 8259 0.103208 AGGCAGCGATTCTAACTCCG 59.897 55.000 0.00 0.00 0.00 4.63
3033 8260 0.102481 GGCAGCGATTCTAACTCCGA 59.898 55.000 0.00 0.00 0.00 4.55
3034 8261 1.201343 GCAGCGATTCTAACTCCGAC 58.799 55.000 0.00 0.00 0.00 4.79
3035 8262 1.841450 CAGCGATTCTAACTCCGACC 58.159 55.000 0.00 0.00 0.00 4.79
3036 8263 1.134367 CAGCGATTCTAACTCCGACCA 59.866 52.381 0.00 0.00 0.00 4.02
3037 8264 1.134560 AGCGATTCTAACTCCGACCAC 59.865 52.381 0.00 0.00 0.00 4.16
3038 8265 1.134560 GCGATTCTAACTCCGACCACT 59.865 52.381 0.00 0.00 0.00 4.00
3039 8266 2.795331 GCGATTCTAACTCCGACCACTC 60.795 54.545 0.00 0.00 0.00 3.51
3040 8267 2.223525 CGATTCTAACTCCGACCACTCC 60.224 54.545 0.00 0.00 0.00 3.85
3041 8268 1.171308 TTCTAACTCCGACCACTCCG 58.829 55.000 0.00 0.00 0.00 4.63
3048 8275 3.138798 CGACCACTCCGGATCCGT 61.139 66.667 31.22 13.04 38.63 4.69
3049 8276 2.806237 GACCACTCCGGATCCGTC 59.194 66.667 31.22 17.82 38.63 4.79
3050 8277 2.036731 ACCACTCCGGATCCGTCA 59.963 61.111 31.22 17.14 38.63 4.35
3051 8278 1.601419 GACCACTCCGGATCCGTCAA 61.601 60.000 31.22 15.97 38.63 3.18
3052 8279 1.153628 CCACTCCGGATCCGTCAAC 60.154 63.158 31.22 0.00 36.56 3.18
3053 8280 1.605058 CCACTCCGGATCCGTCAACT 61.605 60.000 31.22 7.27 36.56 3.16
3054 8281 0.458543 CACTCCGGATCCGTCAACTG 60.459 60.000 31.22 15.75 37.81 3.16
3055 8282 1.141881 CTCCGGATCCGTCAACTGG 59.858 63.158 31.22 15.02 37.81 4.00
3056 8283 2.186903 CCGGATCCGTCAACTGGG 59.813 66.667 31.22 10.74 37.81 4.45
3057 8284 2.186903 CGGATCCGTCAACTGGGG 59.813 66.667 26.35 0.00 34.35 4.96
3058 8285 2.656069 CGGATCCGTCAACTGGGGT 61.656 63.158 26.35 0.00 34.35 4.95
3059 8286 1.078426 GGATCCGTCAACTGGGGTG 60.078 63.158 0.00 0.00 0.00 4.61
3060 8287 1.677552 GATCCGTCAACTGGGGTGT 59.322 57.895 0.00 0.00 0.00 4.16
3061 8288 0.391263 GATCCGTCAACTGGGGTGTC 60.391 60.000 0.00 0.00 0.00 3.67
3062 8289 1.125093 ATCCGTCAACTGGGGTGTCA 61.125 55.000 0.00 0.00 0.00 3.58
3063 8290 1.125093 TCCGTCAACTGGGGTGTCAT 61.125 55.000 0.00 0.00 0.00 3.06
3064 8291 0.673644 CCGTCAACTGGGGTGTCATC 60.674 60.000 0.00 0.00 0.00 2.92
3065 8292 0.673644 CGTCAACTGGGGTGTCATCC 60.674 60.000 0.00 0.00 0.00 3.51
3066 8293 0.322546 GTCAACTGGGGTGTCATCCC 60.323 60.000 15.04 15.04 46.31 3.85
3072 8299 2.033448 GGGTGTCATCCCGTGCAA 59.967 61.111 0.00 0.00 37.93 4.08
3073 8300 2.040544 GGGTGTCATCCCGTGCAAG 61.041 63.158 0.00 0.00 37.93 4.01
3074 8301 1.302511 GGTGTCATCCCGTGCAAGT 60.303 57.895 0.00 0.00 0.00 3.16
3075 8302 0.889186 GGTGTCATCCCGTGCAAGTT 60.889 55.000 0.00 0.00 0.00 2.66
3076 8303 0.238289 GTGTCATCCCGTGCAAGTTG 59.762 55.000 0.00 0.00 0.00 3.16
3077 8304 0.888736 TGTCATCCCGTGCAAGTTGG 60.889 55.000 4.75 0.00 0.00 3.77
3078 8305 0.605319 GTCATCCCGTGCAAGTTGGA 60.605 55.000 4.75 0.00 0.00 3.53
3079 8306 0.321564 TCATCCCGTGCAAGTTGGAG 60.322 55.000 4.75 0.00 0.00 3.86
3080 8307 1.002134 ATCCCGTGCAAGTTGGAGG 60.002 57.895 9.82 9.82 0.00 4.30
3081 8308 1.488705 ATCCCGTGCAAGTTGGAGGA 61.489 55.000 17.38 12.42 0.00 3.71
3082 8309 1.672356 CCCGTGCAAGTTGGAGGAG 60.672 63.158 17.38 1.38 0.00 3.69
3083 8310 1.672356 CCGTGCAAGTTGGAGGAGG 60.672 63.158 17.38 8.55 0.00 4.30
3084 8311 2.328099 CGTGCAAGTTGGAGGAGGC 61.328 63.158 11.18 0.00 0.00 4.70
3085 8312 1.228245 GTGCAAGTTGGAGGAGGCA 60.228 57.895 4.75 0.00 0.00 4.75
3086 8313 0.823356 GTGCAAGTTGGAGGAGGCAA 60.823 55.000 4.75 0.00 32.50 4.52
3087 8314 0.112995 TGCAAGTTGGAGGAGGCAAT 59.887 50.000 4.75 0.00 0.00 3.56
3088 8315 0.529378 GCAAGTTGGAGGAGGCAATG 59.471 55.000 4.75 0.00 0.00 2.82
3089 8316 1.180029 CAAGTTGGAGGAGGCAATGG 58.820 55.000 0.00 0.00 0.00 3.16
3090 8317 0.613012 AAGTTGGAGGAGGCAATGGC 60.613 55.000 0.00 0.00 40.13 4.40
3091 8318 2.045045 TTGGAGGAGGCAATGGCG 60.045 61.111 0.00 0.00 42.47 5.69
3092 8319 2.601702 TTGGAGGAGGCAATGGCGA 61.602 57.895 0.00 0.00 42.47 5.54
3093 8320 1.925285 TTGGAGGAGGCAATGGCGAT 61.925 55.000 0.00 0.00 42.47 4.58
3094 8321 1.599240 GGAGGAGGCAATGGCGATC 60.599 63.158 0.00 0.89 42.47 3.69
3095 8322 1.599240 GAGGAGGCAATGGCGATCC 60.599 63.158 6.94 6.94 43.38 3.36
3096 8323 2.974698 GGAGGCAATGGCGATCCG 60.975 66.667 0.00 0.00 42.47 4.18
3108 8335 1.559814 CGATCCGCATTGCACTACG 59.440 57.895 9.69 5.32 0.00 3.51
3109 8336 1.276844 GATCCGCATTGCACTACGC 59.723 57.895 9.69 0.00 42.89 4.42
3110 8337 2.105960 GATCCGCATTGCACTACGCC 62.106 60.000 9.69 0.00 41.33 5.68
3111 8338 4.222589 CCGCATTGCACTACGCCG 62.223 66.667 9.69 0.00 41.33 6.46
3112 8339 4.868900 CGCATTGCACTACGCCGC 62.869 66.667 9.69 0.00 41.33 6.53
3113 8340 3.499737 GCATTGCACTACGCCGCT 61.500 61.111 3.15 0.00 41.33 5.52
3114 8341 2.703409 CATTGCACTACGCCGCTC 59.297 61.111 0.00 0.00 41.33 5.03
3115 8342 2.511600 ATTGCACTACGCCGCTCC 60.512 61.111 0.00 0.00 41.33 4.70
3116 8343 4.752879 TTGCACTACGCCGCTCCC 62.753 66.667 0.00 0.00 41.33 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 5188 2.743183 GCTCATTCTGATGGCCGTAGTT 60.743 50.000 0.00 0.00 33.93 2.24
125 5223 1.516365 CGATAGGGGAGCGACGACAT 61.516 60.000 0.00 0.00 40.14 3.06
160 5258 4.302455 AGATTTTCAGGCTATCATCGACG 58.698 43.478 0.00 0.00 0.00 5.12
174 5272 3.058293 GGACACGTGCATGAAGATTTTCA 60.058 43.478 17.22 0.54 46.67 2.69
210 5308 0.737367 CGATGACTGCGGCTTCAGAA 60.737 55.000 11.65 1.97 37.51 3.02
211 5309 1.153765 CGATGACTGCGGCTTCAGA 60.154 57.895 11.65 0.00 37.51 3.27
215 5313 0.391661 AATGACGATGACTGCGGCTT 60.392 50.000 0.00 0.00 37.73 4.35
226 5324 5.989477 TCTATTCAAGGGTTCAATGACGAT 58.011 37.500 0.00 0.00 0.00 3.73
285 5392 3.523972 GGGAGGTGAGGTTAGGATTTCTT 59.476 47.826 0.00 0.00 0.00 2.52
304 5411 1.015609 TCCTACTGTCTCCATGGGGA 58.984 55.000 11.36 11.36 42.29 4.81
317 5424 1.606903 CTCCGGCGTAGATTCCTACT 58.393 55.000 6.01 0.00 42.35 2.57
351 5458 2.186903 CCAGTTCGTCCATCCGGG 59.813 66.667 0.00 0.00 38.37 5.73
354 5461 1.134670 CCTTCTCCAGTTCGTCCATCC 60.135 57.143 0.00 0.00 0.00 3.51
367 5474 1.390565 TCGGACTTCGATCCTTCTCC 58.609 55.000 3.65 0.00 43.74 3.71
391 5498 4.876107 GGTGACACTTCTTCTTTGAGTTCA 59.124 41.667 5.39 0.00 0.00 3.18
392 5499 4.876107 TGGTGACACTTCTTCTTTGAGTTC 59.124 41.667 5.39 0.00 33.40 3.01
417 5524 1.600511 TAGATGCGGCGTTCAGGTGA 61.601 55.000 9.37 0.00 0.00 4.02
453 5562 7.930865 TCCGCTTTGGTTAGTAGTTTAGTTTAA 59.069 33.333 0.00 0.00 39.52 1.52
472 5581 0.321653 AATCTCGTTGCCTCCGCTTT 60.322 50.000 0.00 0.00 35.36 3.51
484 5593 4.261701 CGAGGAGGGGAATCTCGT 57.738 61.111 0.00 0.00 43.51 4.18
527 5636 0.918983 TCATGAATTCGCCTCCCCTT 59.081 50.000 0.04 0.00 0.00 3.95
544 5653 2.181777 GCGTCGCTGGTGAGATCA 59.818 61.111 10.68 0.00 0.00 2.92
546 5655 4.148825 GGGCGTCGCTGGTGAGAT 62.149 66.667 18.11 0.00 0.00 2.75
645 5832 8.449251 TCGGATTTATTCATCAAACATCATGA 57.551 30.769 0.00 0.00 0.00 3.07
690 5877 4.142160 GGGAGGCATAACATGTTCTTTTCC 60.142 45.833 15.85 15.53 0.00 3.13
695 5882 2.684927 GCTGGGAGGCATAACATGTTCT 60.685 50.000 15.85 5.73 0.00 3.01
696 5883 1.678101 GCTGGGAGGCATAACATGTTC 59.322 52.381 15.85 0.20 0.00 3.18
704 5893 2.300956 TGTTTTTGCTGGGAGGCATA 57.699 45.000 0.00 0.00 42.09 3.14
714 5903 7.484324 GCATACATGTTTTGTTTTGTTTTTGCT 59.516 29.630 2.30 0.00 39.87 3.91
759 5949 2.032528 GGGCTACACTGCTGCACA 59.967 61.111 0.00 0.00 0.00 4.57
760 5950 1.743252 GAGGGCTACACTGCTGCAC 60.743 63.158 0.00 0.00 0.00 4.57
763 5953 1.446792 CACGAGGGCTACACTGCTG 60.447 63.158 0.00 0.00 0.00 4.41
764 5954 0.611062 TACACGAGGGCTACACTGCT 60.611 55.000 0.00 0.00 0.00 4.24
827 6017 9.181061 GGCTCTCCTCCTAATAATTAGTACTAG 57.819 40.741 2.23 0.00 0.00 2.57
829 6019 7.536625 TGGCTCTCCTCCTAATAATTAGTACT 58.463 38.462 0.00 0.00 0.00 2.73
830 6020 7.452189 ACTGGCTCTCCTCCTAATAATTAGTAC 59.548 40.741 0.00 0.00 0.00 2.73
956 6146 3.780902 CCGTTCCTTTAATTGGGATTGC 58.219 45.455 0.00 0.00 0.00 3.56
958 6148 2.425668 CGCCGTTCCTTTAATTGGGATT 59.574 45.455 0.00 0.00 0.00 3.01
998 6189 1.858458 GCGATGTTCGTGCTAGCATTA 59.142 47.619 22.51 9.38 42.81 1.90
1224 6415 1.587933 GGCTATAGCTCCCCGTCGAG 61.588 65.000 23.53 0.00 41.70 4.04
1314 6514 0.322546 GGTTGACCAGGGTGATGTCC 60.323 60.000 0.00 0.00 35.64 4.02
1387 6589 0.962489 CTCCTGTCCTCGCCGAATAT 59.038 55.000 0.00 0.00 0.00 1.28
1440 6651 1.234615 CCTTGTACCGCCCTGTTGTG 61.235 60.000 0.00 0.00 0.00 3.33
1690 6910 4.093952 CGCAGGCAGAAACGGCAG 62.094 66.667 0.00 0.00 0.00 4.85
2056 7276 0.798776 GGCTCCAATGTCTTGACGTG 59.201 55.000 0.00 0.00 34.04 4.49
2220 7441 7.883311 ACAATACAAAGTAGAAGCACCTTGTAT 59.117 33.333 5.00 5.00 43.20 2.29
2223 7444 6.560253 ACAATACAAAGTAGAAGCACCTTG 57.440 37.500 0.00 0.00 0.00 3.61
2387 7612 4.891756 AGCAAAGCCTGTTGATATAATGCT 59.108 37.500 0.00 0.00 35.73 3.79
2402 7627 7.414429 GGGAATTATCAAAATTTGAGCAAAGCC 60.414 37.037 14.10 13.48 43.98 4.35
2432 7657 9.488124 GAGATATCGGACGATGTATAGTTAAAC 57.512 37.037 16.70 0.00 36.17 2.01
2472 7697 7.660208 GGTTCATATCGGTTGACTTTGGTATAT 59.340 37.037 0.00 0.00 0.00 0.86
2483 7708 6.551975 TCTGGTATAAGGTTCATATCGGTTGA 59.448 38.462 0.00 0.00 0.00 3.18
2497 7722 9.627123 TCAAGGTTCAAAATATCTGGTATAAGG 57.373 33.333 0.00 0.00 0.00 2.69
2509 7734 6.723298 TTGCTTCCTTCAAGGTTCAAAATA 57.277 33.333 2.50 0.00 36.53 1.40
2534 7759 8.039603 TGGATTATGTAAAGTGCTACTGTTTG 57.960 34.615 0.00 0.00 0.00 2.93
2535 7760 8.807948 ATGGATTATGTAAAGTGCTACTGTTT 57.192 30.769 0.00 0.00 0.00 2.83
2538 7763 9.764363 TTCTATGGATTATGTAAAGTGCTACTG 57.236 33.333 0.00 0.00 0.00 2.74
2564 7790 6.702716 TGAGGGACGAAAAACATACTTTTT 57.297 33.333 0.00 0.00 34.64 1.94
2569 7795 5.237779 TGAACTTGAGGGACGAAAAACATAC 59.762 40.000 0.00 0.00 0.00 2.39
2572 7798 3.375922 GTGAACTTGAGGGACGAAAAACA 59.624 43.478 0.00 0.00 0.00 2.83
2582 7808 2.821991 ACTTCTCGTGAACTTGAGGG 57.178 50.000 0.00 0.00 33.00 4.30
2589 7815 4.686554 AGCAAATGTCTACTTCTCGTGAAC 59.313 41.667 0.00 0.00 0.00 3.18
2596 7822 3.840666 TGAGGGAGCAAATGTCTACTTCT 59.159 43.478 0.00 0.00 0.00 2.85
2640 7867 4.090090 GGCTGTAGATGCTCTAAGGGATA 58.910 47.826 0.00 0.00 29.58 2.59
2649 7876 2.280457 GCCCGGCTGTAGATGCTC 60.280 66.667 0.71 0.00 0.00 4.26
2650 7877 4.227134 CGCCCGGCTGTAGATGCT 62.227 66.667 8.05 0.00 0.00 3.79
2666 7893 4.778143 CGAGGAGGGTTTGGGGCG 62.778 72.222 0.00 0.00 0.00 6.13
2667 7894 2.902457 TTCGAGGAGGGTTTGGGGC 61.902 63.158 0.00 0.00 0.00 5.80
2668 7895 1.002502 GTTCGAGGAGGGTTTGGGG 60.003 63.158 0.00 0.00 0.00 4.96
2669 7896 1.375523 CGTTCGAGGAGGGTTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
2670 7897 2.033194 GCGTTCGAGGAGGGTTTGG 61.033 63.158 0.00 0.00 0.00 3.28
2671 7898 2.033194 GGCGTTCGAGGAGGGTTTG 61.033 63.158 0.00 0.00 0.00 2.93
2672 7899 2.346365 GGCGTTCGAGGAGGGTTT 59.654 61.111 0.00 0.00 0.00 3.27
2673 7900 3.703127 GGGCGTTCGAGGAGGGTT 61.703 66.667 0.00 0.00 0.00 4.11
2696 7923 4.736896 GTCAGTGACCGGGCGGAC 62.737 72.222 12.54 8.79 38.96 4.79
2705 7932 2.386661 AATCATGACCGGTCAGTGAC 57.613 50.000 37.98 15.24 43.61 3.67
2706 7933 3.417069 AAAATCATGACCGGTCAGTGA 57.583 42.857 37.98 34.86 43.61 3.41
2707 7934 3.501828 TGAAAAATCATGACCGGTCAGTG 59.498 43.478 37.98 31.85 43.61 3.66
2708 7935 3.750371 TGAAAAATCATGACCGGTCAGT 58.250 40.909 37.98 24.91 43.61 3.41
2709 7936 4.216257 AGTTGAAAAATCATGACCGGTCAG 59.784 41.667 37.98 28.75 43.61 3.51
2710 7937 4.141287 AGTTGAAAAATCATGACCGGTCA 58.859 39.130 37.79 37.79 44.59 4.02
2711 7938 4.215399 TGAGTTGAAAAATCATGACCGGTC 59.785 41.667 28.17 28.17 46.99 4.79
2712 7939 4.141287 TGAGTTGAAAAATCATGACCGGT 58.859 39.130 6.92 6.92 46.99 5.28
2713 7940 4.764679 TGAGTTGAAAAATCATGACCGG 57.235 40.909 0.00 0.00 46.99 5.28
2721 7948 4.441087 GGCGTCTGTTTGAGTTGAAAAATC 59.559 41.667 0.00 0.00 42.13 2.17
2722 7949 4.097892 AGGCGTCTGTTTGAGTTGAAAAAT 59.902 37.500 0.00 0.00 0.00 1.82
2723 7950 3.442273 AGGCGTCTGTTTGAGTTGAAAAA 59.558 39.130 0.00 0.00 0.00 1.94
2724 7951 3.013921 AGGCGTCTGTTTGAGTTGAAAA 58.986 40.909 0.00 0.00 0.00 2.29
2725 7952 2.612212 GAGGCGTCTGTTTGAGTTGAAA 59.388 45.455 0.00 0.00 0.00 2.69
2726 7953 2.210116 GAGGCGTCTGTTTGAGTTGAA 58.790 47.619 0.00 0.00 0.00 2.69
2727 7954 1.138069 TGAGGCGTCTGTTTGAGTTGA 59.862 47.619 8.06 0.00 0.00 3.18
2728 7955 1.581934 TGAGGCGTCTGTTTGAGTTG 58.418 50.000 8.06 0.00 0.00 3.16
2729 7956 2.325583 TTGAGGCGTCTGTTTGAGTT 57.674 45.000 8.06 0.00 0.00 3.01
2730 7957 1.940613 GTTTGAGGCGTCTGTTTGAGT 59.059 47.619 8.06 0.00 0.00 3.41
2731 7958 1.070577 CGTTTGAGGCGTCTGTTTGAG 60.071 52.381 8.06 0.00 0.00 3.02
2732 7959 0.934496 CGTTTGAGGCGTCTGTTTGA 59.066 50.000 8.06 0.00 0.00 2.69
2733 7960 0.041312 CCGTTTGAGGCGTCTGTTTG 60.041 55.000 8.06 0.00 0.00 2.93
2734 7961 1.164041 CCCGTTTGAGGCGTCTGTTT 61.164 55.000 8.06 0.00 0.00 2.83
2735 7962 1.597027 CCCGTTTGAGGCGTCTGTT 60.597 57.895 8.06 0.00 0.00 3.16
2736 7963 2.030562 CCCGTTTGAGGCGTCTGT 59.969 61.111 8.06 0.00 0.00 3.41
2737 7964 2.027625 GACCCGTTTGAGGCGTCTG 61.028 63.158 8.06 0.00 32.41 3.51
2738 7965 2.156051 GAGACCCGTTTGAGGCGTCT 62.156 60.000 8.06 0.00 41.34 4.18
2739 7966 1.737008 GAGACCCGTTTGAGGCGTC 60.737 63.158 0.00 0.00 34.09 5.19
2740 7967 2.035237 TTGAGACCCGTTTGAGGCGT 62.035 55.000 0.00 0.00 0.00 5.68
2741 7968 0.882927 TTTGAGACCCGTTTGAGGCG 60.883 55.000 0.00 0.00 0.00 5.52
2742 7969 0.591659 GTTTGAGACCCGTTTGAGGC 59.408 55.000 0.00 0.00 0.00 4.70
2743 7970 0.865769 CGTTTGAGACCCGTTTGAGG 59.134 55.000 0.00 0.00 0.00 3.86
2744 7971 0.234884 GCGTTTGAGACCCGTTTGAG 59.765 55.000 0.00 0.00 0.00 3.02
2745 7972 1.492319 CGCGTTTGAGACCCGTTTGA 61.492 55.000 0.00 0.00 0.00 2.69
2746 7973 1.083015 CGCGTTTGAGACCCGTTTG 60.083 57.895 0.00 0.00 0.00 2.93
2747 7974 2.248835 CCGCGTTTGAGACCCGTTT 61.249 57.895 4.92 0.00 0.00 3.60
2748 7975 2.663852 CCGCGTTTGAGACCCGTT 60.664 61.111 4.92 0.00 0.00 4.44
2751 7978 3.723348 GTGCCGCGTTTGAGACCC 61.723 66.667 4.92 0.00 0.00 4.46
2752 7979 3.723348 GGTGCCGCGTTTGAGACC 61.723 66.667 4.92 0.00 0.00 3.85
2753 7980 3.723348 GGGTGCCGCGTTTGAGAC 61.723 66.667 4.92 0.00 0.00 3.36
2758 7985 4.344865 ATGAGGGGTGCCGCGTTT 62.345 61.111 4.92 0.00 0.00 3.60
2759 7986 4.778143 GATGAGGGGTGCCGCGTT 62.778 66.667 4.92 0.00 0.00 4.84
2761 7988 4.899239 GAGATGAGGGGTGCCGCG 62.899 72.222 0.00 0.00 0.00 6.46
2762 7989 2.093537 CTAGAGATGAGGGGTGCCGC 62.094 65.000 0.00 0.00 0.00 6.53
2763 7990 2.045280 CTAGAGATGAGGGGTGCCG 58.955 63.158 0.00 0.00 0.00 5.69
2764 7991 1.751563 GCTAGAGATGAGGGGTGCC 59.248 63.158 0.00 0.00 0.00 5.01
2765 7992 1.751563 GGCTAGAGATGAGGGGTGC 59.248 63.158 0.00 0.00 0.00 5.01
2766 7993 0.399091 TGGGCTAGAGATGAGGGGTG 60.399 60.000 0.00 0.00 0.00 4.61
2767 7994 0.343372 TTGGGCTAGAGATGAGGGGT 59.657 55.000 0.00 0.00 0.00 4.95
2768 7995 1.511613 TTTGGGCTAGAGATGAGGGG 58.488 55.000 0.00 0.00 0.00 4.79
2769 7996 4.533707 TCATATTTGGGCTAGAGATGAGGG 59.466 45.833 0.00 0.00 0.00 4.30
2770 7997 5.732633 CTCATATTTGGGCTAGAGATGAGG 58.267 45.833 15.38 1.30 36.67 3.86
2771 7998 5.732633 CCTCATATTTGGGCTAGAGATGAG 58.267 45.833 15.99 15.99 38.90 2.90
2772 7999 4.019860 GCCTCATATTTGGGCTAGAGATGA 60.020 45.833 0.00 0.00 42.31 2.92
2773 8000 4.260170 GCCTCATATTTGGGCTAGAGATG 58.740 47.826 0.00 0.00 42.31 2.90
2774 8001 3.055530 CGCCTCATATTTGGGCTAGAGAT 60.056 47.826 11.69 0.00 43.29 2.75
2775 8002 2.300152 CGCCTCATATTTGGGCTAGAGA 59.700 50.000 11.69 0.00 43.29 3.10
2776 8003 2.613977 CCGCCTCATATTTGGGCTAGAG 60.614 54.545 11.69 0.00 43.29 2.43
2777 8004 1.347707 CCGCCTCATATTTGGGCTAGA 59.652 52.381 11.69 0.00 43.29 2.43
2778 8005 1.347707 TCCGCCTCATATTTGGGCTAG 59.652 52.381 11.69 0.00 43.29 3.42
2779 8006 1.429930 TCCGCCTCATATTTGGGCTA 58.570 50.000 11.69 1.22 43.29 3.93
2780 8007 0.773644 ATCCGCCTCATATTTGGGCT 59.226 50.000 11.69 0.00 43.29 5.19
2781 8008 2.489938 TATCCGCCTCATATTTGGGC 57.510 50.000 5.85 5.85 42.18 5.36
2782 8009 3.282021 CCATATCCGCCTCATATTTGGG 58.718 50.000 0.00 0.00 0.00 4.12
2783 8010 3.282021 CCCATATCCGCCTCATATTTGG 58.718 50.000 0.00 0.00 0.00 3.28
2784 8011 3.282021 CCCCATATCCGCCTCATATTTG 58.718 50.000 0.00 0.00 0.00 2.32
2785 8012 2.242196 CCCCCATATCCGCCTCATATTT 59.758 50.000 0.00 0.00 0.00 1.40
2786 8013 1.846439 CCCCCATATCCGCCTCATATT 59.154 52.381 0.00 0.00 0.00 1.28
2787 8014 1.009552 TCCCCCATATCCGCCTCATAT 59.990 52.381 0.00 0.00 0.00 1.78
2788 8015 0.415830 TCCCCCATATCCGCCTCATA 59.584 55.000 0.00 0.00 0.00 2.15
2789 8016 0.475632 TTCCCCCATATCCGCCTCAT 60.476 55.000 0.00 0.00 0.00 2.90
2790 8017 1.074090 TTCCCCCATATCCGCCTCA 60.074 57.895 0.00 0.00 0.00 3.86
2791 8018 1.375326 GTTCCCCCATATCCGCCTC 59.625 63.158 0.00 0.00 0.00 4.70
2792 8019 2.154074 GGTTCCCCCATATCCGCCT 61.154 63.158 0.00 0.00 0.00 5.52
2793 8020 2.434774 GGTTCCCCCATATCCGCC 59.565 66.667 0.00 0.00 0.00 6.13
2803 8030 3.938637 CTCAAAGCCCGGGTTCCCC 62.939 68.421 24.63 4.30 41.09 4.81
2804 8031 2.361230 CTCAAAGCCCGGGTTCCC 60.361 66.667 24.63 4.76 0.00 3.97
2805 8032 2.361230 CCTCAAAGCCCGGGTTCC 60.361 66.667 24.63 5.20 0.00 3.62
2806 8033 2.361230 CCCTCAAAGCCCGGGTTC 60.361 66.667 24.63 6.10 33.16 3.62
2809 8036 4.740822 CCACCCTCAAAGCCCGGG 62.741 72.222 19.09 19.09 43.79 5.73
2810 8037 3.920093 GACCACCCTCAAAGCCCGG 62.920 68.421 0.00 0.00 0.00 5.73
2811 8038 2.359975 GACCACCCTCAAAGCCCG 60.360 66.667 0.00 0.00 0.00 6.13
2812 8039 2.035783 GGACCACCCTCAAAGCCC 59.964 66.667 0.00 0.00 0.00 5.19
2826 8053 3.506455 GCTTTTACTTGAGAAAGGGGGAC 59.494 47.826 0.00 0.00 34.30 4.46
2827 8054 3.763057 GCTTTTACTTGAGAAAGGGGGA 58.237 45.455 0.00 0.00 34.30 4.81
2828 8055 2.488153 CGCTTTTACTTGAGAAAGGGGG 59.512 50.000 5.35 0.00 40.23 5.40
2829 8056 2.095212 GCGCTTTTACTTGAGAAAGGGG 60.095 50.000 0.00 2.44 42.59 4.79
2830 8057 2.412847 CGCGCTTTTACTTGAGAAAGGG 60.413 50.000 5.56 8.09 44.13 3.95
2831 8058 2.839474 CGCGCTTTTACTTGAGAAAGG 58.161 47.619 5.56 0.00 34.30 3.11
2832 8059 2.234187 GCGCGCTTTTACTTGAGAAAG 58.766 47.619 26.67 0.00 36.26 2.62
2833 8060 1.069500 GGCGCGCTTTTACTTGAGAAA 60.069 47.619 32.29 0.00 0.00 2.52
2834 8061 0.515564 GGCGCGCTTTTACTTGAGAA 59.484 50.000 32.29 0.00 0.00 2.87
2835 8062 1.296056 GGGCGCGCTTTTACTTGAGA 61.296 55.000 32.29 0.00 0.00 3.27
2836 8063 1.134694 GGGCGCGCTTTTACTTGAG 59.865 57.895 32.29 0.00 0.00 3.02
2837 8064 2.673114 CGGGCGCGCTTTTACTTGA 61.673 57.895 32.29 0.00 0.00 3.02
2838 8065 2.202298 CGGGCGCGCTTTTACTTG 60.202 61.111 32.29 7.97 0.00 3.16
2839 8066 3.428282 CCGGGCGCGCTTTTACTT 61.428 61.111 32.29 0.00 0.00 2.24
2871 8098 2.605295 AACATGGGTCGGGTCCGA 60.605 61.111 8.14 8.14 46.87 4.55
2872 8099 2.435938 CAACATGGGTCGGGTCCG 60.436 66.667 2.52 2.52 41.35 4.79
2873 8100 2.045340 CCAACATGGGTCGGGTCC 60.045 66.667 0.00 0.00 32.67 4.46
2874 8101 2.750237 GCCAACATGGGTCGGGTC 60.750 66.667 0.00 0.00 38.19 4.46
2875 8102 4.360405 GGCCAACATGGGTCGGGT 62.360 66.667 0.00 0.00 38.19 5.28
2877 8104 4.358841 TGGGCCAACATGGGTCGG 62.359 66.667 2.13 0.00 38.19 4.79
2878 8105 3.061848 GTGGGCCAACATGGGTCG 61.062 66.667 8.40 0.00 38.19 4.79
2879 8106 2.679996 GGTGGGCCAACATGGGTC 60.680 66.667 18.85 0.00 38.19 4.46
2880 8107 4.315264 GGGTGGGCCAACATGGGT 62.315 66.667 25.48 0.00 38.19 4.51
2882 8109 4.358841 TCGGGTGGGCCAACATGG 62.359 66.667 25.48 12.11 41.55 3.66
2883 8110 3.061848 GTCGGGTGGGCCAACATG 61.062 66.667 25.48 15.52 36.17 3.21
2884 8111 4.360405 GGTCGGGTGGGCCAACAT 62.360 66.667 25.48 0.00 36.17 2.71
2891 8118 0.765135 TATATGTGGGGTCGGGTGGG 60.765 60.000 0.00 0.00 0.00 4.61
2892 8119 1.278127 GATATATGTGGGGTCGGGTGG 59.722 57.143 0.00 0.00 0.00 4.61
2893 8120 1.278127 GGATATATGTGGGGTCGGGTG 59.722 57.143 0.00 0.00 0.00 4.61
2894 8121 1.132657 TGGATATATGTGGGGTCGGGT 60.133 52.381 0.00 0.00 0.00 5.28
2895 8122 1.651737 TGGATATATGTGGGGTCGGG 58.348 55.000 0.00 0.00 0.00 5.14
2896 8123 2.170607 GGATGGATATATGTGGGGTCGG 59.829 54.545 0.00 0.00 0.00 4.79
2897 8124 2.170607 GGGATGGATATATGTGGGGTCG 59.829 54.545 0.00 0.00 0.00 4.79
2898 8125 2.509964 GGGGATGGATATATGTGGGGTC 59.490 54.545 0.00 0.00 0.00 4.46
2899 8126 2.157707 TGGGGATGGATATATGTGGGGT 60.158 50.000 0.00 0.00 0.00 4.95
2900 8127 2.572340 TGGGGATGGATATATGTGGGG 58.428 52.381 0.00 0.00 0.00 4.96
2901 8128 3.139025 GGATGGGGATGGATATATGTGGG 59.861 52.174 0.00 0.00 0.00 4.61
2902 8129 3.181451 CGGATGGGGATGGATATATGTGG 60.181 52.174 0.00 0.00 0.00 4.17
2903 8130 3.745480 GCGGATGGGGATGGATATATGTG 60.745 52.174 0.00 0.00 0.00 3.21
2904 8131 2.439507 GCGGATGGGGATGGATATATGT 59.560 50.000 0.00 0.00 0.00 2.29
2905 8132 2.707791 AGCGGATGGGGATGGATATATG 59.292 50.000 0.00 0.00 0.00 1.78
2906 8133 2.975489 GAGCGGATGGGGATGGATATAT 59.025 50.000 0.00 0.00 0.00 0.86
2907 8134 2.398588 GAGCGGATGGGGATGGATATA 58.601 52.381 0.00 0.00 0.00 0.86
2908 8135 1.207791 GAGCGGATGGGGATGGATAT 58.792 55.000 0.00 0.00 0.00 1.63
2909 8136 1.257750 CGAGCGGATGGGGATGGATA 61.258 60.000 0.00 0.00 0.00 2.59
2910 8137 2.587247 CGAGCGGATGGGGATGGAT 61.587 63.158 0.00 0.00 0.00 3.41
2911 8138 3.233980 CGAGCGGATGGGGATGGA 61.234 66.667 0.00 0.00 0.00 3.41
2912 8139 3.521529 GACGAGCGGATGGGGATGG 62.522 68.421 0.00 0.00 0.00 3.51
2913 8140 2.029666 GACGAGCGGATGGGGATG 59.970 66.667 0.00 0.00 0.00 3.51
2914 8141 3.606662 CGACGAGCGGATGGGGAT 61.607 66.667 0.00 0.00 36.03 3.85
2923 8150 3.110178 GGGTTTGTCCGACGAGCG 61.110 66.667 0.00 0.00 40.47 5.03
2931 8158 1.228154 AAGTGGCTCGGGTTTGTCC 60.228 57.895 0.00 0.00 0.00 4.02
2932 8159 0.534203 TGAAGTGGCTCGGGTTTGTC 60.534 55.000 0.00 0.00 0.00 3.18
2933 8160 0.818040 GTGAAGTGGCTCGGGTTTGT 60.818 55.000 0.00 0.00 0.00 2.83
2934 8161 0.535102 AGTGAAGTGGCTCGGGTTTG 60.535 55.000 0.00 0.00 0.00 2.93
2935 8162 0.250338 GAGTGAAGTGGCTCGGGTTT 60.250 55.000 0.00 0.00 0.00 3.27
2936 8163 1.371558 GAGTGAAGTGGCTCGGGTT 59.628 57.895 0.00 0.00 0.00 4.11
2937 8164 2.584391 GGAGTGAAGTGGCTCGGGT 61.584 63.158 0.00 0.00 32.83 5.28
2938 8165 2.266055 GGAGTGAAGTGGCTCGGG 59.734 66.667 0.00 0.00 32.83 5.14
2939 8166 1.374758 GTGGAGTGAAGTGGCTCGG 60.375 63.158 0.00 0.00 32.83 4.63
2940 8167 0.389166 GAGTGGAGTGAAGTGGCTCG 60.389 60.000 0.00 0.00 32.83 5.03
2941 8168 0.036858 GGAGTGGAGTGAAGTGGCTC 60.037 60.000 0.00 0.00 0.00 4.70
2942 8169 1.484444 GGGAGTGGAGTGAAGTGGCT 61.484 60.000 0.00 0.00 0.00 4.75
2943 8170 1.003233 GGGAGTGGAGTGAAGTGGC 60.003 63.158 0.00 0.00 0.00 5.01
2944 8171 0.838122 AGGGGAGTGGAGTGAAGTGG 60.838 60.000 0.00 0.00 0.00 4.00
2945 8172 0.610687 GAGGGGAGTGGAGTGAAGTG 59.389 60.000 0.00 0.00 0.00 3.16
2946 8173 0.545548 GGAGGGGAGTGGAGTGAAGT 60.546 60.000 0.00 0.00 0.00 3.01
2947 8174 1.608717 CGGAGGGGAGTGGAGTGAAG 61.609 65.000 0.00 0.00 0.00 3.02
2948 8175 1.609501 CGGAGGGGAGTGGAGTGAA 60.610 63.158 0.00 0.00 0.00 3.18
2949 8176 2.037367 CGGAGGGGAGTGGAGTGA 59.963 66.667 0.00 0.00 0.00 3.41
2950 8177 3.775654 GCGGAGGGGAGTGGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
2966 8193 4.459089 GAGGTGAGCTCGGGTGGC 62.459 72.222 9.64 0.00 0.00 5.01
2967 8194 3.775654 GGAGGTGAGCTCGGGTGG 61.776 72.222 9.64 0.00 0.00 4.61
2968 8195 4.135153 CGGAGGTGAGCTCGGGTG 62.135 72.222 9.64 0.00 0.00 4.61
2986 8213 4.222847 GAGATGACCGGACCCCGC 62.223 72.222 9.46 0.00 46.86 6.13
2988 8215 2.435693 CCAGAGATGACCGGACCCC 61.436 68.421 9.46 0.00 0.00 4.95
2989 8216 3.095347 GCCAGAGATGACCGGACCC 62.095 68.421 9.46 0.00 0.00 4.46
2990 8217 1.690219 ATGCCAGAGATGACCGGACC 61.690 60.000 9.46 0.00 0.00 4.46
2991 8218 1.000283 CTATGCCAGAGATGACCGGAC 60.000 57.143 9.46 1.07 0.00 4.79
2992 8219 1.332195 CTATGCCAGAGATGACCGGA 58.668 55.000 9.46 0.00 0.00 5.14
2993 8220 0.320247 GCTATGCCAGAGATGACCGG 60.320 60.000 0.00 0.00 0.00 5.28
2994 8221 0.390492 TGCTATGCCAGAGATGACCG 59.610 55.000 0.00 0.00 0.00 4.79
2995 8222 1.270732 CCTGCTATGCCAGAGATGACC 60.271 57.143 0.00 0.00 34.77 4.02
2996 8223 1.877258 GCCTGCTATGCCAGAGATGAC 60.877 57.143 0.00 0.00 34.77 3.06
2997 8224 0.395686 GCCTGCTATGCCAGAGATGA 59.604 55.000 0.00 0.00 34.77 2.92
2998 8225 0.108019 TGCCTGCTATGCCAGAGATG 59.892 55.000 0.00 0.00 34.77 2.90
2999 8226 0.397187 CTGCCTGCTATGCCAGAGAT 59.603 55.000 0.00 0.00 34.77 2.75
3000 8227 1.828081 CTGCCTGCTATGCCAGAGA 59.172 57.895 0.00 0.00 34.77 3.10
3001 8228 1.892862 GCTGCCTGCTATGCCAGAG 60.893 63.158 0.00 0.00 38.95 3.35
3002 8229 2.191375 GCTGCCTGCTATGCCAGA 59.809 61.111 0.00 0.00 38.95 3.86
3003 8230 3.277602 CGCTGCCTGCTATGCCAG 61.278 66.667 0.00 0.00 40.11 4.85
3004 8231 2.613660 AATCGCTGCCTGCTATGCCA 62.614 55.000 0.00 0.00 40.11 4.92
3005 8232 1.849976 GAATCGCTGCCTGCTATGCC 61.850 60.000 0.00 0.00 40.11 4.40
3006 8233 0.883814 AGAATCGCTGCCTGCTATGC 60.884 55.000 0.00 0.00 40.11 3.14
3007 8234 2.445565 TAGAATCGCTGCCTGCTATG 57.554 50.000 0.00 0.00 40.11 2.23
3008 8235 2.366916 AGTTAGAATCGCTGCCTGCTAT 59.633 45.455 0.00 0.00 40.11 2.97
3009 8236 1.757118 AGTTAGAATCGCTGCCTGCTA 59.243 47.619 0.00 0.00 40.11 3.49
3010 8237 0.539051 AGTTAGAATCGCTGCCTGCT 59.461 50.000 0.00 0.00 40.11 4.24
3011 8238 0.933796 GAGTTAGAATCGCTGCCTGC 59.066 55.000 0.00 0.00 38.57 4.85
3012 8239 1.576356 GGAGTTAGAATCGCTGCCTG 58.424 55.000 0.00 0.00 0.00 4.85
3013 8240 0.103208 CGGAGTTAGAATCGCTGCCT 59.897 55.000 0.00 0.00 0.00 4.75
3014 8241 0.102481 TCGGAGTTAGAATCGCTGCC 59.898 55.000 0.00 0.00 0.00 4.85
3015 8242 1.201343 GTCGGAGTTAGAATCGCTGC 58.799 55.000 0.00 0.00 0.00 5.25
3016 8243 1.134367 TGGTCGGAGTTAGAATCGCTG 59.866 52.381 0.00 0.00 0.00 5.18
3017 8244 1.134560 GTGGTCGGAGTTAGAATCGCT 59.865 52.381 0.00 0.00 0.00 4.93
3018 8245 1.134560 AGTGGTCGGAGTTAGAATCGC 59.865 52.381 0.00 0.00 0.00 4.58
3019 8246 2.223525 GGAGTGGTCGGAGTTAGAATCG 60.224 54.545 0.00 0.00 0.00 3.34
3020 8247 2.223525 CGGAGTGGTCGGAGTTAGAATC 60.224 54.545 0.00 0.00 0.00 2.52
3021 8248 1.749634 CGGAGTGGTCGGAGTTAGAAT 59.250 52.381 0.00 0.00 0.00 2.40
3022 8249 1.171308 CGGAGTGGTCGGAGTTAGAA 58.829 55.000 0.00 0.00 0.00 2.10
3023 8250 2.864114 CGGAGTGGTCGGAGTTAGA 58.136 57.895 0.00 0.00 0.00 2.10
3031 8258 3.122250 GACGGATCCGGAGTGGTCG 62.122 68.421 35.87 11.33 44.69 4.79
3032 8259 1.601419 TTGACGGATCCGGAGTGGTC 61.601 60.000 35.87 23.37 44.69 4.02
3033 8260 1.608336 TTGACGGATCCGGAGTGGT 60.608 57.895 35.87 15.85 44.69 4.16
3034 8261 1.153628 GTTGACGGATCCGGAGTGG 60.154 63.158 35.87 9.83 44.69 4.00
3035 8262 0.458543 CAGTTGACGGATCCGGAGTG 60.459 60.000 35.87 26.93 44.69 3.51
3036 8263 1.605058 CCAGTTGACGGATCCGGAGT 61.605 60.000 35.87 21.19 44.69 3.85
3037 8264 1.141881 CCAGTTGACGGATCCGGAG 59.858 63.158 35.87 18.33 44.69 4.63
3038 8265 2.355986 CCCAGTTGACGGATCCGGA 61.356 63.158 35.87 20.57 44.69 5.14
3039 8266 2.186903 CCCAGTTGACGGATCCGG 59.813 66.667 35.87 19.10 44.69 5.14
3040 8267 2.186903 CCCCAGTTGACGGATCCG 59.813 66.667 32.20 32.20 46.03 4.18
3041 8268 1.078426 CACCCCAGTTGACGGATCC 60.078 63.158 0.00 0.00 0.00 3.36
3042 8269 0.391263 GACACCCCAGTTGACGGATC 60.391 60.000 0.00 0.00 0.00 3.36
3043 8270 1.125093 TGACACCCCAGTTGACGGAT 61.125 55.000 0.00 0.00 0.00 4.18
3044 8271 1.125093 ATGACACCCCAGTTGACGGA 61.125 55.000 0.00 0.00 0.00 4.69
3045 8272 0.673644 GATGACACCCCAGTTGACGG 60.674 60.000 0.00 0.00 0.00 4.79
3046 8273 0.673644 GGATGACACCCCAGTTGACG 60.674 60.000 0.00 0.00 0.00 4.35
3047 8274 0.322546 GGGATGACACCCCAGTTGAC 60.323 60.000 0.00 0.00 43.81 3.18
3048 8275 1.836999 CGGGATGACACCCCAGTTGA 61.837 60.000 5.48 0.00 46.62 3.18
3049 8276 1.377202 CGGGATGACACCCCAGTTG 60.377 63.158 5.48 0.00 46.62 3.16
3050 8277 1.846124 ACGGGATGACACCCCAGTT 60.846 57.895 5.48 0.00 46.62 3.16
3051 8278 2.203938 ACGGGATGACACCCCAGT 60.204 61.111 5.48 0.72 46.62 4.00
3052 8279 2.268920 CACGGGATGACACCCCAG 59.731 66.667 5.48 0.02 46.62 4.45
3053 8280 4.028490 GCACGGGATGACACCCCA 62.028 66.667 5.48 0.00 46.62 4.96
3054 8281 3.561120 TTGCACGGGATGACACCCC 62.561 63.158 0.00 0.00 46.62 4.95
3055 8282 2.033448 TTGCACGGGATGACACCC 59.967 61.111 0.00 0.00 45.92 4.61
3056 8283 0.889186 AACTTGCACGGGATGACACC 60.889 55.000 0.00 0.00 0.00 4.16
3057 8284 0.238289 CAACTTGCACGGGATGACAC 59.762 55.000 0.00 0.00 0.00 3.67
3058 8285 0.888736 CCAACTTGCACGGGATGACA 60.889 55.000 0.00 0.00 0.00 3.58
3059 8286 0.605319 TCCAACTTGCACGGGATGAC 60.605 55.000 0.00 0.00 0.00 3.06
3060 8287 0.321564 CTCCAACTTGCACGGGATGA 60.322 55.000 0.00 0.00 0.00 2.92
3061 8288 1.308069 CCTCCAACTTGCACGGGATG 61.308 60.000 0.00 0.00 0.00 3.51
3062 8289 1.002134 CCTCCAACTTGCACGGGAT 60.002 57.895 0.00 0.00 0.00 3.85
3063 8290 2.111999 CTCCTCCAACTTGCACGGGA 62.112 60.000 0.00 0.00 0.00 5.14
3064 8291 1.672356 CTCCTCCAACTTGCACGGG 60.672 63.158 0.00 0.00 0.00 5.28
3065 8292 1.672356 CCTCCTCCAACTTGCACGG 60.672 63.158 0.00 0.00 0.00 4.94
3066 8293 2.328099 GCCTCCTCCAACTTGCACG 61.328 63.158 0.00 0.00 0.00 5.34
3067 8294 0.823356 TTGCCTCCTCCAACTTGCAC 60.823 55.000 0.00 0.00 0.00 4.57
3068 8295 0.112995 ATTGCCTCCTCCAACTTGCA 59.887 50.000 0.00 0.00 0.00 4.08
3069 8296 0.529378 CATTGCCTCCTCCAACTTGC 59.471 55.000 0.00 0.00 0.00 4.01
3070 8297 1.180029 CCATTGCCTCCTCCAACTTG 58.820 55.000 0.00 0.00 0.00 3.16
3071 8298 0.613012 GCCATTGCCTCCTCCAACTT 60.613 55.000 0.00 0.00 0.00 2.66
3072 8299 1.000396 GCCATTGCCTCCTCCAACT 60.000 57.895 0.00 0.00 0.00 3.16
3073 8300 2.409870 CGCCATTGCCTCCTCCAAC 61.410 63.158 0.00 0.00 0.00 3.77
3074 8301 1.925285 ATCGCCATTGCCTCCTCCAA 61.925 55.000 0.00 0.00 0.00 3.53
3075 8302 2.329539 GATCGCCATTGCCTCCTCCA 62.330 60.000 0.00 0.00 0.00 3.86
3076 8303 1.599240 GATCGCCATTGCCTCCTCC 60.599 63.158 0.00 0.00 0.00 4.30
3077 8304 1.599240 GGATCGCCATTGCCTCCTC 60.599 63.158 0.00 0.00 34.49 3.71
3078 8305 2.512896 GGATCGCCATTGCCTCCT 59.487 61.111 0.00 0.00 34.49 3.69
3079 8306 2.974698 CGGATCGCCATTGCCTCC 60.975 66.667 0.00 0.00 34.15 4.30
3090 8317 1.559814 CGTAGTGCAATGCGGATCG 59.440 57.895 16.94 0.00 0.00 3.69
3091 8318 1.276844 GCGTAGTGCAATGCGGATC 59.723 57.895 24.94 5.91 45.45 3.36
3092 8319 3.409856 GCGTAGTGCAATGCGGAT 58.590 55.556 24.94 0.00 45.45 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.